Multiple sequence alignment - TraesCS7A01G276400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G276400 chr7A 100.000 2783 0 0 1 2783 288927622 288930404 0.000000e+00 5140.0
1 TraesCS7A01G276400 chr7D 94.481 1504 64 6 601 2096 264752408 264753900 0.000000e+00 2300.0
2 TraesCS7A01G276400 chr7D 94.581 406 19 1 70 472 264751679 264752084 2.350000e-175 625.0
3 TraesCS7A01G276400 chr7D 79.705 271 30 19 2207 2465 264754257 264754514 3.690000e-39 172.0
4 TraesCS7A01G276400 chr7B 89.988 1698 80 21 601 2278 245070636 245072263 0.000000e+00 2111.0
5 TraesCS7A01G276400 chr7B 89.366 489 26 10 9 472 245069755 245070242 2.390000e-165 592.0
6 TraesCS7A01G276400 chr7B 87.593 403 39 6 2302 2702 245072333 245072726 9.090000e-125 457.0
7 TraesCS7A01G276400 chr1D 91.148 723 56 5 1068 1783 472561000 472561721 0.000000e+00 974.0
8 TraesCS7A01G276400 chr1A 91.010 723 57 5 1068 1783 566564257 566564978 0.000000e+00 968.0
9 TraesCS7A01G276400 chr5B 88.462 806 71 15 995 1781 532876655 532877457 0.000000e+00 953.0
10 TraesCS7A01G276400 chr5B 88.789 669 75 0 1115 1783 638336803 638336135 0.000000e+00 821.0
11 TraesCS7A01G276400 chr1B 90.318 723 62 5 1068 1783 657272149 657272870 0.000000e+00 941.0
12 TraesCS7A01G276400 chr5A 90.139 720 65 3 1068 1781 553420967 553421686 0.000000e+00 931.0
13 TraesCS7A01G276400 chr5D 89.607 712 68 3 1076 1781 438360064 438360775 0.000000e+00 900.0
14 TraesCS7A01G276400 chr5D 94.444 36 0 2 2236 2271 493426812 493426779 1.000000e-03 54.7
15 TraesCS7A01G276400 chr3A 95.714 70 3 0 2632 2701 46006479 46006410 2.270000e-21 113.0
16 TraesCS7A01G276400 chr3A 100.000 28 0 0 2236 2263 143021241 143021214 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G276400 chr7A 288927622 288930404 2782 False 5140.000000 5140 100.000000 1 2783 1 chr7A.!!$F1 2782
1 TraesCS7A01G276400 chr7D 264751679 264754514 2835 False 1032.333333 2300 89.589000 70 2465 3 chr7D.!!$F1 2395
2 TraesCS7A01G276400 chr7B 245069755 245072726 2971 False 1053.333333 2111 88.982333 9 2702 3 chr7B.!!$F1 2693
3 TraesCS7A01G276400 chr1D 472561000 472561721 721 False 974.000000 974 91.148000 1068 1783 1 chr1D.!!$F1 715
4 TraesCS7A01G276400 chr1A 566564257 566564978 721 False 968.000000 968 91.010000 1068 1783 1 chr1A.!!$F1 715
5 TraesCS7A01G276400 chr5B 532876655 532877457 802 False 953.000000 953 88.462000 995 1781 1 chr5B.!!$F1 786
6 TraesCS7A01G276400 chr5B 638336135 638336803 668 True 821.000000 821 88.789000 1115 1783 1 chr5B.!!$R1 668
7 TraesCS7A01G276400 chr1B 657272149 657272870 721 False 941.000000 941 90.318000 1068 1783 1 chr1B.!!$F1 715
8 TraesCS7A01G276400 chr5A 553420967 553421686 719 False 931.000000 931 90.139000 1068 1781 1 chr5A.!!$F1 713
9 TraesCS7A01G276400 chr5D 438360064 438360775 711 False 900.000000 900 89.607000 1076 1781 1 chr5D.!!$F1 705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 56 0.108662 TCGTTCGCTGATGCTCATGT 60.109 50.0 0.00 0.00 36.97 3.21 F
686 1041 0.179006 GGGGAGGGAGTCATGAATGC 60.179 60.0 6.07 6.07 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 1816 0.899720 CGTGGACCAAGCTAGGGTTA 59.100 55.0 11.01 2.21 39.19 2.85 R
2179 2580 0.036671 CAACTACGACCCTCCCAACC 60.037 60.0 0.00 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 52 0.246912 CGTTTCGTTCGCTGATGCTC 60.247 55.000 0.00 0.00 36.97 4.26
54 56 0.108662 TCGTTCGCTGATGCTCATGT 60.109 50.000 0.00 0.00 36.97 3.21
60 62 1.202110 CGCTGATGCTCATGTTGGTTC 60.202 52.381 0.00 0.00 36.97 3.62
61 63 2.089980 GCTGATGCTCATGTTGGTTCT 58.910 47.619 0.00 0.00 36.03 3.01
64 79 4.008330 CTGATGCTCATGTTGGTTCTCTT 58.992 43.478 0.00 0.00 0.00 2.85
74 89 8.272545 TCATGTTGGTTCTCTTTCTTATCATG 57.727 34.615 0.00 0.00 0.00 3.07
75 90 7.337689 TCATGTTGGTTCTCTTTCTTATCATGG 59.662 37.037 0.00 0.00 0.00 3.66
84 99 7.150640 TCTCTTTCTTATCATGGTCATCATCG 58.849 38.462 0.00 0.00 32.92 3.84
225 243 1.071471 CTGGCTCTTCAACGTGGGT 59.929 57.895 0.00 0.00 0.00 4.51
231 249 0.828022 TCTTCAACGTGGGTGTGAGT 59.172 50.000 0.00 0.00 0.00 3.41
234 252 1.145156 CAACGTGGGTGTGAGTGGA 59.855 57.895 0.00 0.00 0.00 4.02
249 267 3.706373 GGAGCCTGGCTTGTCCGA 61.706 66.667 24.26 0.00 39.88 4.55
361 379 2.103042 GTGCCTGCCGCTAACTCAG 61.103 63.158 0.00 0.00 38.78 3.35
384 402 6.703165 CAGGCCCAAAAGCTAATTGATTAATC 59.297 38.462 8.60 8.60 0.00 1.75
412 430 4.334203 TGCCTTAGCCGTATTGTATTTGTG 59.666 41.667 0.00 0.00 38.69 3.33
415 433 6.037391 GCCTTAGCCGTATTGTATTTGTGTAA 59.963 38.462 0.00 0.00 0.00 2.41
472 501 2.572290 TGATTCAGCAGAGCATCCATG 58.428 47.619 0.00 0.00 33.66 3.66
474 503 2.034104 TTCAGCAGAGCATCCATGTC 57.966 50.000 0.00 0.00 33.66 3.06
478 507 2.121948 AGCAGAGCATCCATGTCCTAA 58.878 47.619 0.00 0.00 33.66 2.69
480 509 3.137913 AGCAGAGCATCCATGTCCTAATT 59.862 43.478 0.00 0.00 33.66 1.40
481 510 4.349048 AGCAGAGCATCCATGTCCTAATTA 59.651 41.667 0.00 0.00 33.66 1.40
482 511 5.065914 GCAGAGCATCCATGTCCTAATTAA 58.934 41.667 0.00 0.00 33.66 1.40
484 513 6.881065 GCAGAGCATCCATGTCCTAATTAATA 59.119 38.462 0.00 0.00 33.66 0.98
486 515 7.335422 CAGAGCATCCATGTCCTAATTAATACC 59.665 40.741 0.00 0.00 33.66 2.73
489 703 6.128282 GCATCCATGTCCTAATTAATACCACG 60.128 42.308 0.00 0.00 0.00 4.94
503 717 5.929697 AATACCACGTCATGCATAATCTG 57.070 39.130 0.00 0.00 0.00 2.90
505 719 4.400529 ACCACGTCATGCATAATCTGTA 57.599 40.909 0.00 0.00 0.00 2.74
509 723 6.591448 ACCACGTCATGCATAATCTGTATATG 59.409 38.462 0.00 0.00 34.55 1.78
540 843 3.645884 TCAACTCTGTTTACTACCGTGC 58.354 45.455 0.00 0.00 0.00 5.34
542 845 3.572604 ACTCTGTTTACTACCGTGCTC 57.427 47.619 0.00 0.00 0.00 4.26
543 846 2.095364 ACTCTGTTTACTACCGTGCTCG 60.095 50.000 0.14 0.14 0.00 5.03
553 856 3.244105 CGTGCTCGGTTTCTGGTG 58.756 61.111 0.00 0.00 0.00 4.17
572 881 3.129638 GGTGAAGTGTTTTGGTGCTGTAA 59.870 43.478 0.00 0.00 0.00 2.41
573 882 4.202111 GGTGAAGTGTTTTGGTGCTGTAAT 60.202 41.667 0.00 0.00 0.00 1.89
593 902 5.999205 AATATGCCAAAATCTCACCACAA 57.001 34.783 0.00 0.00 0.00 3.33
599 908 3.191371 CCAAAATCTCACCACAACTAGCC 59.809 47.826 0.00 0.00 0.00 3.93
622 975 2.041620 ACAATCCAGGGTGCATGTTACT 59.958 45.455 0.00 0.00 0.00 2.24
630 983 4.021192 CAGGGTGCATGTTACTGGAAAAAT 60.021 41.667 0.00 0.00 0.00 1.82
631 984 4.021192 AGGGTGCATGTTACTGGAAAAATG 60.021 41.667 0.00 0.00 0.00 2.32
634 987 6.165577 GGTGCATGTTACTGGAAAAATGAAT 58.834 36.000 0.00 0.00 0.00 2.57
635 988 6.091169 GGTGCATGTTACTGGAAAAATGAATG 59.909 38.462 0.00 0.00 0.00 2.67
636 989 6.646240 GTGCATGTTACTGGAAAAATGAATGT 59.354 34.615 0.00 0.00 0.00 2.71
656 1011 7.611467 TGAATGTATTCTAGTTTTGGATGTGCT 59.389 33.333 6.21 0.00 37.67 4.40
686 1041 0.179006 GGGGAGGGAGTCATGAATGC 60.179 60.000 6.07 6.07 0.00 3.56
734 1089 3.593794 GCCGATCGTCCTAGCCGT 61.594 66.667 15.09 0.00 0.00 5.68
755 1119 1.004918 AGAAGGCCGTTTCAGGTCG 60.005 57.895 7.43 0.00 41.68 4.79
756 1120 1.301479 GAAGGCCGTTTCAGGTCGT 60.301 57.895 0.00 0.00 41.68 4.34
757 1121 1.289800 GAAGGCCGTTTCAGGTCGTC 61.290 60.000 0.00 0.00 41.68 4.20
758 1122 2.726822 AAGGCCGTTTCAGGTCGTCC 62.727 60.000 0.00 0.00 41.68 4.79
759 1123 3.110178 GCCGTTTCAGGTCGTCCG 61.110 66.667 0.00 0.00 39.05 4.79
760 1124 2.431942 CCGTTTCAGGTCGTCCGG 60.432 66.667 0.00 0.00 39.05 5.14
761 1125 2.431942 CGTTTCAGGTCGTCCGGG 60.432 66.667 0.00 0.00 39.05 5.73
762 1126 2.739132 GTTTCAGGTCGTCCGGGT 59.261 61.111 0.00 0.00 39.05 5.28
763 1127 1.373873 GTTTCAGGTCGTCCGGGTC 60.374 63.158 0.00 0.00 39.05 4.46
772 1136 2.920912 GTCCGGGTCCAGGTGTCA 60.921 66.667 8.03 0.00 0.00 3.58
815 1179 2.452937 GCCCCATCCACCCTACTCC 61.453 68.421 0.00 0.00 0.00 3.85
817 1181 1.056700 CCCCATCCACCCTACTCCAG 61.057 65.000 0.00 0.00 0.00 3.86
924 1290 0.702316 TTTAACCTCCCTCCCTTGCC 59.298 55.000 0.00 0.00 0.00 4.52
1425 1816 2.439883 GGCCTCGACTACCTCGGT 60.440 66.667 0.00 0.00 43.16 4.69
1590 1981 1.690219 CCCTTGGCCTAGCTGACGAT 61.690 60.000 8.91 0.00 0.00 3.73
1593 1984 0.975556 TTGGCCTAGCTGACGATCCA 60.976 55.000 3.32 0.00 0.00 3.41
1701 2092 2.605601 ACCGGTAAGGGTCCGCTT 60.606 61.111 4.49 2.08 46.96 4.68
1791 2182 1.468520 CCCGGCAAGTAAACACATGAG 59.531 52.381 0.00 0.00 0.00 2.90
1814 2205 7.447374 AGAATCGACTTCTCAGGAGTATATG 57.553 40.000 0.00 0.00 40.26 1.78
1965 2359 8.330466 TGAATACGAGTGGACATTAATTGTTT 57.670 30.769 0.00 0.00 39.18 2.83
2090 2491 2.397751 CAAGCCGTGGATAAGCAGG 58.602 57.895 0.00 0.00 0.00 4.85
2091 2492 0.107703 CAAGCCGTGGATAAGCAGGA 60.108 55.000 0.00 0.00 0.00 3.86
2092 2493 0.179000 AAGCCGTGGATAAGCAGGAG 59.821 55.000 0.00 0.00 0.00 3.69
2093 2494 0.978146 AGCCGTGGATAAGCAGGAGT 60.978 55.000 0.00 0.00 0.00 3.85
2120 2521 1.038130 AAGCAGGAGTCGGCGATAGT 61.038 55.000 14.79 0.00 39.08 2.12
2232 2896 2.690840 GGGTGGGGCTTAGAGAGATTA 58.309 52.381 0.00 0.00 0.00 1.75
2342 3053 7.134815 GTGATCTATTTTTGATCGTTGGATGG 58.865 38.462 0.00 0.00 42.18 3.51
2366 3077 6.374417 AGATCCAGTGGTTGTTAATAGTGT 57.626 37.500 9.54 0.00 0.00 3.55
2371 3082 5.639506 CCAGTGGTTGTTAATAGTGTCTGAG 59.360 44.000 0.00 0.00 0.00 3.35
2382 3093 8.396390 GTTAATAGTGTCTGAGTCGTAGATGAA 58.604 37.037 0.00 0.00 40.67 2.57
2409 3120 2.543777 GGTACTGAAACCTGACTGCA 57.456 50.000 0.00 0.00 36.53 4.41
2422 3133 3.012518 CTGACTGCACTCCCTTAATTGG 58.987 50.000 0.00 0.00 0.00 3.16
2426 3137 1.892474 TGCACTCCCTTAATTGGTTGC 59.108 47.619 10.75 10.75 35.12 4.17
2428 3139 2.164422 GCACTCCCTTAATTGGTTGCTC 59.836 50.000 10.55 0.00 33.16 4.26
2441 3152 1.467342 GGTTGCTCCGTTGGTTATCAC 59.533 52.381 0.00 0.00 0.00 3.06
2465 3176 7.224753 CACTTTCTCACTTTAGCTGTACTCAAA 59.775 37.037 0.00 0.00 0.00 2.69
2471 3182 5.182001 CACTTTAGCTGTACTCAAATTGGCT 59.818 40.000 0.00 0.00 0.00 4.75
2481 3192 6.939730 TGTACTCAAATTGGCTGATGAAGTTA 59.060 34.615 0.00 0.00 0.00 2.24
2483 3194 6.917533 ACTCAAATTGGCTGATGAAGTTAAG 58.082 36.000 0.00 0.00 0.00 1.85
2487 3198 8.246180 TCAAATTGGCTGATGAAGTTAAGAATC 58.754 33.333 0.00 0.00 0.00 2.52
2488 3199 7.951347 AATTGGCTGATGAAGTTAAGAATCT 57.049 32.000 0.00 0.00 0.00 2.40
2489 3200 9.466497 AAATTGGCTGATGAAGTTAAGAATCTA 57.534 29.630 0.00 0.00 0.00 1.98
2490 3201 8.674263 ATTGGCTGATGAAGTTAAGAATCTAG 57.326 34.615 0.00 0.00 0.00 2.43
2491 3202 7.187824 TGGCTGATGAAGTTAAGAATCTAGT 57.812 36.000 0.00 0.00 0.00 2.57
2492 3203 7.624549 TGGCTGATGAAGTTAAGAATCTAGTT 58.375 34.615 0.00 0.00 0.00 2.24
2493 3204 8.758829 TGGCTGATGAAGTTAAGAATCTAGTTA 58.241 33.333 0.00 0.00 0.00 2.24
2494 3205 9.036671 GGCTGATGAAGTTAAGAATCTAGTTAC 57.963 37.037 0.00 0.00 0.00 2.50
2520 3231 5.814705 CCTTTGTTACATTTTTGTGCCAAGA 59.185 36.000 0.00 0.00 0.00 3.02
2524 3235 5.105554 TGTTACATTTTTGTGCCAAGAGTGT 60.106 36.000 9.93 9.93 0.00 3.55
2533 3244 1.340502 TGCCAAGAGTGTGACAAACCA 60.341 47.619 0.00 0.00 0.00 3.67
2537 3248 2.951642 CAAGAGTGTGACAAACCACCAT 59.048 45.455 0.00 0.00 36.26 3.55
2574 3285 4.499696 GCACTTTTGTCAATGCTTGGTACT 60.500 41.667 2.95 0.00 35.16 2.73
2586 3297 2.285977 CTTGGTACTGCGGGAATTACC 58.714 52.381 0.00 0.00 35.47 2.85
2610 3321 4.400251 CCAACTCCACATATGATGCTTTGT 59.600 41.667 10.38 0.00 0.00 2.83
2613 3324 5.012239 ACTCCACATATGATGCTTTGTGTT 58.988 37.500 10.38 0.00 38.19 3.32
2616 3327 4.142622 CCACATATGATGCTTTGTGTTCGT 60.143 41.667 10.38 0.00 38.19 3.85
2619 3330 6.363088 CACATATGATGCTTTGTGTTCGTTTT 59.637 34.615 10.38 0.00 35.79 2.43
2620 3331 6.363088 ACATATGATGCTTTGTGTTCGTTTTG 59.637 34.615 10.38 0.00 0.00 2.44
2645 3358 1.261619 CGAAAGAACTGCTCCACACAC 59.738 52.381 0.00 0.00 0.00 3.82
2671 3384 3.720949 TTATGGACCGATCCTTGTACG 57.279 47.619 0.00 0.00 46.43 3.67
2690 3403 2.002586 CGACAAATCAATCCAGCGACT 58.997 47.619 0.00 0.00 0.00 4.18
2691 3404 2.222886 CGACAAATCAATCCAGCGACTG 60.223 50.000 0.00 0.00 0.00 3.51
2702 3415 1.000283 CCAGCGACTGTCAACTCTTCT 60.000 52.381 8.73 0.00 0.00 2.85
2703 3416 2.546795 CCAGCGACTGTCAACTCTTCTT 60.547 50.000 8.73 0.00 0.00 2.52
2704 3417 3.126831 CAGCGACTGTCAACTCTTCTTT 58.873 45.455 8.73 0.00 0.00 2.52
2705 3418 3.557595 CAGCGACTGTCAACTCTTCTTTT 59.442 43.478 8.73 0.00 0.00 2.27
2706 3419 4.034510 CAGCGACTGTCAACTCTTCTTTTT 59.965 41.667 8.73 0.00 0.00 1.94
2723 3436 2.679355 TTTTTGTCAATCCAGCGACG 57.321 45.000 0.00 0.00 34.78 5.12
2724 3437 0.871722 TTTTGTCAATCCAGCGACGG 59.128 50.000 0.00 0.00 34.78 4.79
2725 3438 0.250124 TTTGTCAATCCAGCGACGGT 60.250 50.000 0.00 0.00 34.78 4.83
2726 3439 0.250124 TTGTCAATCCAGCGACGGTT 60.250 50.000 0.00 0.00 34.78 4.44
2727 3440 0.250124 TGTCAATCCAGCGACGGTTT 60.250 50.000 0.00 0.00 34.78 3.27
2728 3441 0.872388 GTCAATCCAGCGACGGTTTT 59.128 50.000 0.00 0.00 0.00 2.43
2729 3442 1.136057 GTCAATCCAGCGACGGTTTTC 60.136 52.381 0.00 0.00 0.00 2.29
2730 3443 0.871722 CAATCCAGCGACGGTTTTCA 59.128 50.000 0.00 0.00 0.00 2.69
2731 3444 1.468520 CAATCCAGCGACGGTTTTCAT 59.531 47.619 0.00 0.00 0.00 2.57
2732 3445 1.369625 ATCCAGCGACGGTTTTCATC 58.630 50.000 0.00 0.00 0.00 2.92
2733 3446 0.320374 TCCAGCGACGGTTTTCATCT 59.680 50.000 0.00 0.00 0.00 2.90
2734 3447 1.156736 CCAGCGACGGTTTTCATCTT 58.843 50.000 0.00 0.00 0.00 2.40
2735 3448 1.135972 CCAGCGACGGTTTTCATCTTG 60.136 52.381 0.00 0.00 0.00 3.02
2736 3449 1.798223 CAGCGACGGTTTTCATCTTGA 59.202 47.619 0.00 0.00 0.00 3.02
2737 3450 2.069273 AGCGACGGTTTTCATCTTGAG 58.931 47.619 0.00 0.00 0.00 3.02
2738 3451 2.066262 GCGACGGTTTTCATCTTGAGA 58.934 47.619 0.00 0.00 0.00 3.27
2739 3452 2.092838 GCGACGGTTTTCATCTTGAGAG 59.907 50.000 0.00 0.00 0.00 3.20
2740 3453 3.318017 CGACGGTTTTCATCTTGAGAGT 58.682 45.455 0.00 0.00 0.00 3.24
2741 3454 3.365220 CGACGGTTTTCATCTTGAGAGTC 59.635 47.826 0.00 0.00 0.00 3.36
2742 3455 3.665190 ACGGTTTTCATCTTGAGAGTCC 58.335 45.455 0.00 0.00 0.00 3.85
2743 3456 3.071023 ACGGTTTTCATCTTGAGAGTCCA 59.929 43.478 0.00 0.00 0.00 4.02
2744 3457 4.065088 CGGTTTTCATCTTGAGAGTCCAA 58.935 43.478 0.00 0.00 0.00 3.53
2745 3458 4.083802 CGGTTTTCATCTTGAGAGTCCAAC 60.084 45.833 0.00 0.00 0.00 3.77
2746 3459 5.066593 GGTTTTCATCTTGAGAGTCCAACT 58.933 41.667 0.00 0.00 0.00 3.16
2747 3460 5.532779 GGTTTTCATCTTGAGAGTCCAACTT 59.467 40.000 0.00 0.00 0.00 2.66
2748 3461 6.293680 GGTTTTCATCTTGAGAGTCCAACTTC 60.294 42.308 0.00 0.00 0.00 3.01
2749 3462 4.543590 TCATCTTGAGAGTCCAACTTCC 57.456 45.455 0.00 0.00 0.00 3.46
2750 3463 3.903714 TCATCTTGAGAGTCCAACTTCCA 59.096 43.478 0.00 0.00 0.00 3.53
2751 3464 4.533707 TCATCTTGAGAGTCCAACTTCCAT 59.466 41.667 0.00 0.00 0.00 3.41
2752 3465 4.982241 TCTTGAGAGTCCAACTTCCATT 57.018 40.909 0.00 0.00 0.00 3.16
2753 3466 4.899502 TCTTGAGAGTCCAACTTCCATTC 58.100 43.478 0.00 0.00 0.00 2.67
2754 3467 4.347876 TCTTGAGAGTCCAACTTCCATTCA 59.652 41.667 0.00 0.00 0.00 2.57
2755 3468 4.705110 TGAGAGTCCAACTTCCATTCAA 57.295 40.909 0.00 0.00 0.00 2.69
2756 3469 5.047566 TGAGAGTCCAACTTCCATTCAAA 57.952 39.130 0.00 0.00 0.00 2.69
2757 3470 4.821805 TGAGAGTCCAACTTCCATTCAAAC 59.178 41.667 0.00 0.00 0.00 2.93
2758 3471 4.792068 AGAGTCCAACTTCCATTCAAACA 58.208 39.130 0.00 0.00 0.00 2.83
2759 3472 5.388654 AGAGTCCAACTTCCATTCAAACAT 58.611 37.500 0.00 0.00 0.00 2.71
2760 3473 5.835280 AGAGTCCAACTTCCATTCAAACATT 59.165 36.000 0.00 0.00 0.00 2.71
2761 3474 6.015940 AGAGTCCAACTTCCATTCAAACATTC 60.016 38.462 0.00 0.00 0.00 2.67
2762 3475 5.011023 AGTCCAACTTCCATTCAAACATTCC 59.989 40.000 0.00 0.00 0.00 3.01
2763 3476 4.898265 TCCAACTTCCATTCAAACATTCCA 59.102 37.500 0.00 0.00 0.00 3.53
2764 3477 4.990426 CCAACTTCCATTCAAACATTCCAC 59.010 41.667 0.00 0.00 0.00 4.02
2765 3478 5.221501 CCAACTTCCATTCAAACATTCCACT 60.222 40.000 0.00 0.00 0.00 4.00
2766 3479 6.015519 CCAACTTCCATTCAAACATTCCACTA 60.016 38.462 0.00 0.00 0.00 2.74
2767 3480 7.309990 CCAACTTCCATTCAAACATTCCACTAT 60.310 37.037 0.00 0.00 0.00 2.12
2768 3481 7.781324 ACTTCCATTCAAACATTCCACTATT 57.219 32.000 0.00 0.00 0.00 1.73
2769 3482 8.193953 ACTTCCATTCAAACATTCCACTATTT 57.806 30.769 0.00 0.00 0.00 1.40
2770 3483 8.650490 ACTTCCATTCAAACATTCCACTATTTT 58.350 29.630 0.00 0.00 0.00 1.82
2771 3484 9.492973 CTTCCATTCAAACATTCCACTATTTTT 57.507 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.287525 GGGTTGGTTCTGAAAATTCAATTCA 58.712 36.000 0.00 0.00 36.64 2.57
4 5 5.700832 GGGGTTGGTTCTGAAAATTCAATTC 59.299 40.000 0.00 0.00 36.64 2.17
5 6 5.131809 TGGGGTTGGTTCTGAAAATTCAATT 59.868 36.000 0.00 0.00 36.64 2.32
6 7 4.657969 TGGGGTTGGTTCTGAAAATTCAAT 59.342 37.500 0.00 0.00 36.64 2.57
7 8 4.033709 TGGGGTTGGTTCTGAAAATTCAA 58.966 39.130 0.00 0.00 36.64 2.69
13 14 1.341187 ACGTTGGGGTTGGTTCTGAAA 60.341 47.619 0.00 0.00 0.00 2.69
16 17 1.066454 GAAACGTTGGGGTTGGTTCTG 59.934 52.381 0.00 0.00 0.00 3.02
50 52 7.121759 ACCATGATAAGAAAGAGAACCAACATG 59.878 37.037 0.00 0.00 0.00 3.21
54 56 6.778821 TGACCATGATAAGAAAGAGAACCAA 58.221 36.000 0.00 0.00 0.00 3.67
60 62 6.128607 GCGATGATGACCATGATAAGAAAGAG 60.129 42.308 0.00 0.00 35.17 2.85
61 63 5.698089 GCGATGATGACCATGATAAGAAAGA 59.302 40.000 0.00 0.00 35.17 2.52
64 79 4.202346 TGGCGATGATGACCATGATAAGAA 60.202 41.667 0.00 0.00 35.17 2.52
74 89 0.107456 ACAGGATGGCGATGATGACC 59.893 55.000 0.00 0.00 43.62 4.02
75 90 1.600957 CAACAGGATGGCGATGATGAC 59.399 52.381 0.00 0.00 43.62 3.06
84 99 0.177141 AATGCATGCAACAGGATGGC 59.823 50.000 26.68 0.00 43.62 4.40
218 236 3.138625 CTCCACTCACACCCACGT 58.861 61.111 0.00 0.00 0.00 4.49
225 243 2.149383 AAGCCAGGCTCCACTCACA 61.149 57.895 16.53 0.00 38.25 3.58
231 249 4.020617 CGGACAAGCCAGGCTCCA 62.021 66.667 16.53 0.00 38.25 3.86
234 252 3.710722 CCTCGGACAAGCCAGGCT 61.711 66.667 8.70 8.70 42.56 4.58
249 267 4.560739 TCAGATAGATGGTGTTGATCCCT 58.439 43.478 0.00 0.00 0.00 4.20
361 379 6.581712 TGATTAATCAATTAGCTTTTGGGCC 58.418 36.000 15.82 0.00 33.08 5.80
412 430 5.427036 CTAGCTAGCTAGGTGTCACTTAC 57.573 47.826 34.95 7.53 41.58 2.34
472 501 5.756347 TGCATGACGTGGTATTAATTAGGAC 59.244 40.000 0.00 0.00 0.00 3.85
474 503 6.801539 ATGCATGACGTGGTATTAATTAGG 57.198 37.500 0.00 0.00 0.00 2.69
478 507 7.661437 ACAGATTATGCATGACGTGGTATTAAT 59.339 33.333 10.16 0.00 0.00 1.40
480 509 6.521162 ACAGATTATGCATGACGTGGTATTA 58.479 36.000 10.16 0.00 0.00 0.98
481 510 5.368145 ACAGATTATGCATGACGTGGTATT 58.632 37.500 10.16 0.00 0.00 1.89
482 511 4.960938 ACAGATTATGCATGACGTGGTAT 58.039 39.130 10.16 0.00 0.00 2.73
484 513 3.266510 ACAGATTATGCATGACGTGGT 57.733 42.857 10.16 0.00 0.00 4.16
486 515 6.456047 GGCATATACAGATTATGCATGACGTG 60.456 42.308 10.16 4.92 45.97 4.49
503 717 5.521735 CAGAGTTGAGAACACAGGCATATAC 59.478 44.000 0.00 0.00 0.00 1.47
505 719 4.019860 ACAGAGTTGAGAACACAGGCATAT 60.020 41.667 0.00 0.00 0.00 1.78
509 723 2.246719 ACAGAGTTGAGAACACAGGC 57.753 50.000 0.00 0.00 0.00 4.85
540 843 2.240493 ACACTTCACCAGAAACCGAG 57.760 50.000 0.00 0.00 32.35 4.63
542 845 3.434637 CAAAACACTTCACCAGAAACCG 58.565 45.455 0.00 0.00 32.35 4.44
543 846 3.194755 ACCAAAACACTTCACCAGAAACC 59.805 43.478 0.00 0.00 32.35 3.27
544 847 4.173256 CACCAAAACACTTCACCAGAAAC 58.827 43.478 0.00 0.00 32.35 2.78
548 851 1.750778 AGCACCAAAACACTTCACCAG 59.249 47.619 0.00 0.00 0.00 4.00
553 856 5.572896 GCATATTACAGCACCAAAACACTTC 59.427 40.000 0.00 0.00 0.00 3.01
572 881 5.018809 AGTTGTGGTGAGATTTTGGCATAT 58.981 37.500 0.00 0.00 0.00 1.78
573 882 4.406456 AGTTGTGGTGAGATTTTGGCATA 58.594 39.130 0.00 0.00 0.00 3.14
593 902 2.119495 CACCCTGGATTGTAGGCTAGT 58.881 52.381 0.00 0.00 33.86 2.57
599 908 2.425143 ACATGCACCCTGGATTGTAG 57.575 50.000 0.00 0.00 0.00 2.74
630 983 7.611467 AGCACATCCAAAACTAGAATACATTCA 59.389 33.333 0.00 0.00 39.23 2.57
631 984 7.989826 AGCACATCCAAAACTAGAATACATTC 58.010 34.615 0.00 0.00 37.06 2.67
634 987 7.168219 AGAAGCACATCCAAAACTAGAATACA 58.832 34.615 0.00 0.00 0.00 2.29
635 988 7.617041 AGAAGCACATCCAAAACTAGAATAC 57.383 36.000 0.00 0.00 0.00 1.89
636 989 7.336931 GGAAGAAGCACATCCAAAACTAGAATA 59.663 37.037 0.00 0.00 36.50 1.75
643 998 3.305608 CCAGGAAGAAGCACATCCAAAAC 60.306 47.826 7.66 0.00 38.67 2.43
656 1011 3.009115 CCTCCCCGCCAGGAAGAA 61.009 66.667 0.00 0.00 41.02 2.52
677 1032 1.992667 GTCGTCGAGTTGCATTCATGA 59.007 47.619 0.00 0.00 0.00 3.07
734 1089 1.549170 GACCTGAAACGGCCTTCTCTA 59.451 52.381 0.00 0.00 0.00 2.43
755 1119 2.920912 TGACACCTGGACCCGGAC 60.921 66.667 9.25 0.00 0.00 4.79
756 1120 2.603473 CTGACACCTGGACCCGGA 60.603 66.667 9.25 0.00 0.00 5.14
757 1121 3.706373 CCTGACACCTGGACCCGG 61.706 72.222 0.00 0.00 33.65 5.73
758 1122 4.394712 GCCTGACACCTGGACCCG 62.395 72.222 0.00 0.00 33.65 5.28
759 1123 4.035102 GGCCTGACACCTGGACCC 62.035 72.222 0.00 0.00 33.62 4.46
761 1125 4.035102 GGGGCCTGACACCTGGAC 62.035 72.222 0.84 0.00 38.59 4.02
797 1161 2.452937 GGAGTAGGGTGGATGGGGC 61.453 68.421 0.00 0.00 0.00 5.80
833 1197 3.083600 GAAATCACGGTCTGCGGCG 62.084 63.158 0.51 0.51 0.00 6.46
842 1208 3.381949 GTCCTTATCTCGGAAATCACGG 58.618 50.000 0.00 0.00 31.13 4.94
924 1290 1.515020 CTGCGTGAGGAAGAGAGGG 59.485 63.158 0.00 0.00 0.00 4.30
1017 1387 3.483869 GGGGAGGAGAGCGCCATT 61.484 66.667 2.29 0.00 38.18 3.16
1425 1816 0.899720 CGTGGACCAAGCTAGGGTTA 59.100 55.000 11.01 2.21 39.19 2.85
1701 2092 1.666011 GTGGTCAGCGAGGTTCTCA 59.334 57.895 0.00 0.00 0.00 3.27
1791 2182 7.081349 CACATATACTCCTGAGAAGTCGATTC 58.919 42.308 0.22 0.00 38.28 2.52
1814 2205 8.783833 ATATTAATCATACATCCAGAGCACAC 57.216 34.615 0.00 0.00 0.00 3.82
1883 2276 1.462616 TTTCATGTTCCAGATGGGCG 58.537 50.000 0.00 0.00 36.21 6.13
1965 2359 5.381757 AGTACTTGATGTTTAGCAAACCCA 58.618 37.500 8.60 5.23 40.67 4.51
2001 2402 3.684305 CACATAGCGGAAAGTGAATGACA 59.316 43.478 0.00 0.00 33.99 3.58
2077 2478 0.456221 ACGACTCCTGCTTATCCACG 59.544 55.000 0.00 0.00 0.00 4.94
2078 2479 1.471676 CCACGACTCCTGCTTATCCAC 60.472 57.143 0.00 0.00 0.00 4.02
2079 2480 0.824109 CCACGACTCCTGCTTATCCA 59.176 55.000 0.00 0.00 0.00 3.41
2080 2481 1.112113 TCCACGACTCCTGCTTATCC 58.888 55.000 0.00 0.00 0.00 2.59
2081 2482 4.551388 CTTATCCACGACTCCTGCTTATC 58.449 47.826 0.00 0.00 0.00 1.75
2082 2483 3.243907 GCTTATCCACGACTCCTGCTTAT 60.244 47.826 0.00 0.00 0.00 1.73
2083 2484 2.100916 GCTTATCCACGACTCCTGCTTA 59.899 50.000 0.00 0.00 0.00 3.09
2084 2485 1.134670 GCTTATCCACGACTCCTGCTT 60.135 52.381 0.00 0.00 0.00 3.91
2085 2486 0.461961 GCTTATCCACGACTCCTGCT 59.538 55.000 0.00 0.00 0.00 4.24
2086 2487 0.175760 TGCTTATCCACGACTCCTGC 59.824 55.000 0.00 0.00 0.00 4.85
2087 2488 1.202463 CCTGCTTATCCACGACTCCTG 60.202 57.143 0.00 0.00 0.00 3.86
2088 2489 1.115467 CCTGCTTATCCACGACTCCT 58.885 55.000 0.00 0.00 0.00 3.69
2089 2490 1.067821 CTCCTGCTTATCCACGACTCC 59.932 57.143 0.00 0.00 0.00 3.85
2090 2491 1.751924 ACTCCTGCTTATCCACGACTC 59.248 52.381 0.00 0.00 0.00 3.36
2091 2492 1.751924 GACTCCTGCTTATCCACGACT 59.248 52.381 0.00 0.00 0.00 4.18
2092 2493 1.534175 CGACTCCTGCTTATCCACGAC 60.534 57.143 0.00 0.00 0.00 4.34
2093 2494 0.738975 CGACTCCTGCTTATCCACGA 59.261 55.000 0.00 0.00 0.00 4.35
2120 2521 0.762418 TTCAAACTCTCTCCCGGCAA 59.238 50.000 0.00 0.00 0.00 4.52
2173 2574 4.695791 ACCCTCCCAACCCCTCCC 62.696 72.222 0.00 0.00 0.00 4.30
2174 2575 3.015753 GACCCTCCCAACCCCTCC 61.016 72.222 0.00 0.00 0.00 4.30
2175 2576 2.810488 TACGACCCTCCCAACCCCTC 62.810 65.000 0.00 0.00 0.00 4.30
2176 2577 2.817420 CTACGACCCTCCCAACCCCT 62.817 65.000 0.00 0.00 0.00 4.79
2177 2578 2.284847 TACGACCCTCCCAACCCC 60.285 66.667 0.00 0.00 0.00 4.95
2178 2579 1.196766 AACTACGACCCTCCCAACCC 61.197 60.000 0.00 0.00 0.00 4.11
2179 2580 0.036671 CAACTACGACCCTCCCAACC 60.037 60.000 0.00 0.00 0.00 3.77
2180 2581 0.036671 CCAACTACGACCCTCCCAAC 60.037 60.000 0.00 0.00 0.00 3.77
2181 2582 0.178926 TCCAACTACGACCCTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
2182 2583 0.613853 CTCCAACTACGACCCTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
2183 2584 1.957765 GCTCCAACTACGACCCTCCC 61.958 65.000 0.00 0.00 0.00 4.30
2184 2585 0.971447 AGCTCCAACTACGACCCTCC 60.971 60.000 0.00 0.00 0.00 4.30
2185 2586 0.173708 CAGCTCCAACTACGACCCTC 59.826 60.000 0.00 0.00 0.00 4.30
2186 2587 0.542232 ACAGCTCCAACTACGACCCT 60.542 55.000 0.00 0.00 0.00 4.34
2187 2588 0.320697 AACAGCTCCAACTACGACCC 59.679 55.000 0.00 0.00 0.00 4.46
2188 2589 1.000506 TGAACAGCTCCAACTACGACC 59.999 52.381 0.00 0.00 0.00 4.79
2271 2936 1.617018 TAGCTGTCTGCATCGGGCTT 61.617 55.000 0.00 0.00 45.94 4.35
2272 2937 2.025767 CTAGCTGTCTGCATCGGGCT 62.026 60.000 0.00 8.86 45.94 5.19
2342 3053 6.407202 ACACTATTAACAACCACTGGATCTC 58.593 40.000 0.71 0.00 0.00 2.75
2358 3069 8.502105 TTTCATCTACGACTCAGACACTATTA 57.498 34.615 0.00 0.00 0.00 0.98
2366 3077 6.813649 CCTGAAAATTTCATCTACGACTCAGA 59.186 38.462 9.02 0.00 39.30 3.27
2371 3082 7.544566 TCAGTACCTGAAAATTTCATCTACGAC 59.455 37.037 9.02 2.84 37.57 4.34
2406 3117 1.892474 GCAACCAATTAAGGGAGTGCA 59.108 47.619 16.84 0.00 38.76 4.57
2409 3120 2.618045 CGGAGCAACCAATTAAGGGAGT 60.618 50.000 3.13 0.00 38.90 3.85
2422 3133 2.423577 AGTGATAACCAACGGAGCAAC 58.576 47.619 0.00 0.00 0.00 4.17
2426 3137 4.389077 GTGAGAAAGTGATAACCAACGGAG 59.611 45.833 0.00 0.00 0.00 4.63
2428 3139 4.315803 AGTGAGAAAGTGATAACCAACGG 58.684 43.478 0.00 0.00 0.00 4.44
2441 3152 7.715265 TTTGAGTACAGCTAAAGTGAGAAAG 57.285 36.000 0.00 0.00 0.00 2.62
2465 3176 8.270744 ACTAGATTCTTAACTTCATCAGCCAAT 58.729 33.333 0.00 0.00 0.00 3.16
2471 3182 9.871238 GGTGTAACTAGATTCTTAACTTCATCA 57.129 33.333 0.00 0.00 36.74 3.07
2488 3199 9.790389 CACAAAAATGTAACAAAGGTGTAACTA 57.210 29.630 0.00 0.00 36.80 2.24
2489 3200 7.276878 GCACAAAAATGTAACAAAGGTGTAACT 59.723 33.333 0.00 0.00 36.80 2.24
2490 3201 7.395645 GCACAAAAATGTAACAAAGGTGTAAC 58.604 34.615 0.00 0.00 36.80 2.50
2491 3202 6.535508 GGCACAAAAATGTAACAAAGGTGTAA 59.464 34.615 0.00 0.00 36.80 2.41
2492 3203 6.043411 GGCACAAAAATGTAACAAAGGTGTA 58.957 36.000 0.00 0.00 36.80 2.90
2493 3204 4.873259 GGCACAAAAATGTAACAAAGGTGT 59.127 37.500 0.00 0.00 40.75 4.16
2494 3205 4.872691 TGGCACAAAAATGTAACAAAGGTG 59.127 37.500 0.00 0.00 31.92 4.00
2520 3231 2.430332 CCAAATGGTGGTTTGTCACACT 59.570 45.455 0.00 0.00 43.20 3.55
2537 3248 1.745232 AAGTGCAGTTGACGACCAAA 58.255 45.000 5.84 0.00 36.36 3.28
2541 3252 2.095213 TGACAAAAGTGCAGTTGACGAC 59.905 45.455 7.73 0.98 0.00 4.34
2586 3297 3.219176 AGCATCATATGTGGAGTTGGG 57.781 47.619 1.90 0.00 0.00 4.12
2592 3303 4.094739 CGAACACAAAGCATCATATGTGGA 59.905 41.667 1.90 0.00 45.65 4.02
2596 3307 6.363088 ACAAAACGAACACAAAGCATCATATG 59.637 34.615 0.00 0.00 0.00 1.78
2613 3324 5.693104 AGCAGTTCTTTCGTATACAAAACGA 59.307 36.000 3.32 0.00 46.82 3.85
2616 3327 5.992829 TGGAGCAGTTCTTTCGTATACAAAA 59.007 36.000 3.32 0.00 0.00 2.44
2619 3330 4.021807 TGTGGAGCAGTTCTTTCGTATACA 60.022 41.667 3.32 0.00 0.00 2.29
2620 3331 4.326548 GTGTGGAGCAGTTCTTTCGTATAC 59.673 45.833 0.00 0.00 0.00 1.47
2630 3341 2.363788 TATCGTGTGTGGAGCAGTTC 57.636 50.000 0.00 0.00 0.00 3.01
2671 3384 2.744202 ACAGTCGCTGGATTGATTTGTC 59.256 45.455 10.80 0.00 35.51 3.18
2704 3417 1.265635 CCGTCGCTGGATTGACAAAAA 59.734 47.619 0.00 0.00 34.78 1.94
2705 3418 0.871722 CCGTCGCTGGATTGACAAAA 59.128 50.000 0.00 0.00 34.78 2.44
2706 3419 0.250124 ACCGTCGCTGGATTGACAAA 60.250 50.000 0.00 0.00 34.78 2.83
2707 3420 0.250124 AACCGTCGCTGGATTGACAA 60.250 50.000 0.00 0.00 34.78 3.18
2708 3421 0.250124 AAACCGTCGCTGGATTGACA 60.250 50.000 0.00 0.00 34.78 3.58
2709 3422 0.872388 AAAACCGTCGCTGGATTGAC 59.128 50.000 0.00 0.00 0.00 3.18
2710 3423 1.153353 GAAAACCGTCGCTGGATTGA 58.847 50.000 0.00 0.00 0.00 2.57
2711 3424 0.871722 TGAAAACCGTCGCTGGATTG 59.128 50.000 0.00 0.00 0.00 2.67
2712 3425 1.737793 GATGAAAACCGTCGCTGGATT 59.262 47.619 0.00 0.00 0.00 3.01
2713 3426 1.066143 AGATGAAAACCGTCGCTGGAT 60.066 47.619 0.00 0.00 35.94 3.41
2714 3427 0.320374 AGATGAAAACCGTCGCTGGA 59.680 50.000 0.00 0.00 35.94 3.86
2715 3428 1.135972 CAAGATGAAAACCGTCGCTGG 60.136 52.381 0.00 0.00 35.94 4.85
2716 3429 1.798223 TCAAGATGAAAACCGTCGCTG 59.202 47.619 0.00 0.00 35.94 5.18
2717 3430 2.069273 CTCAAGATGAAAACCGTCGCT 58.931 47.619 0.00 0.00 35.94 4.93
2718 3431 2.066262 TCTCAAGATGAAAACCGTCGC 58.934 47.619 0.00 0.00 35.94 5.19
2719 3432 3.318017 ACTCTCAAGATGAAAACCGTCG 58.682 45.455 0.00 0.00 35.94 5.12
2720 3433 3.680458 GGACTCTCAAGATGAAAACCGTC 59.320 47.826 0.00 0.00 0.00 4.79
2721 3434 3.071023 TGGACTCTCAAGATGAAAACCGT 59.929 43.478 0.00 0.00 0.00 4.83
2722 3435 3.664107 TGGACTCTCAAGATGAAAACCG 58.336 45.455 0.00 0.00 0.00 4.44
2723 3436 5.066593 AGTTGGACTCTCAAGATGAAAACC 58.933 41.667 0.00 0.00 0.00 3.27
2724 3437 6.293680 GGAAGTTGGACTCTCAAGATGAAAAC 60.294 42.308 0.00 0.00 0.00 2.43
2725 3438 5.765182 GGAAGTTGGACTCTCAAGATGAAAA 59.235 40.000 0.00 0.00 0.00 2.29
2726 3439 5.163205 TGGAAGTTGGACTCTCAAGATGAAA 60.163 40.000 0.00 0.00 0.00 2.69
2727 3440 4.347876 TGGAAGTTGGACTCTCAAGATGAA 59.652 41.667 0.00 0.00 0.00 2.57
2728 3441 3.903714 TGGAAGTTGGACTCTCAAGATGA 59.096 43.478 0.00 0.00 0.00 2.92
2729 3442 4.277515 TGGAAGTTGGACTCTCAAGATG 57.722 45.455 0.00 0.00 0.00 2.90
2730 3443 5.013495 TGAATGGAAGTTGGACTCTCAAGAT 59.987 40.000 0.00 0.00 0.00 2.40
2731 3444 4.347876 TGAATGGAAGTTGGACTCTCAAGA 59.652 41.667 0.00 0.00 0.00 3.02
2732 3445 4.645535 TGAATGGAAGTTGGACTCTCAAG 58.354 43.478 0.00 0.00 0.00 3.02
2733 3446 4.705110 TGAATGGAAGTTGGACTCTCAA 57.295 40.909 0.00 0.00 0.00 3.02
2734 3447 4.705110 TTGAATGGAAGTTGGACTCTCA 57.295 40.909 0.00 0.00 0.00 3.27
2735 3448 4.821805 TGTTTGAATGGAAGTTGGACTCTC 59.178 41.667 0.00 0.00 0.00 3.20
2736 3449 4.792068 TGTTTGAATGGAAGTTGGACTCT 58.208 39.130 0.00 0.00 0.00 3.24
2737 3450 5.712152 ATGTTTGAATGGAAGTTGGACTC 57.288 39.130 0.00 0.00 0.00 3.36
2738 3451 5.011023 GGAATGTTTGAATGGAAGTTGGACT 59.989 40.000 0.00 0.00 0.00 3.85
2739 3452 5.221422 TGGAATGTTTGAATGGAAGTTGGAC 60.221 40.000 0.00 0.00 0.00 4.02
2740 3453 4.898265 TGGAATGTTTGAATGGAAGTTGGA 59.102 37.500 0.00 0.00 0.00 3.53
2741 3454 4.990426 GTGGAATGTTTGAATGGAAGTTGG 59.010 41.667 0.00 0.00 0.00 3.77
2742 3455 5.846203 AGTGGAATGTTTGAATGGAAGTTG 58.154 37.500 0.00 0.00 0.00 3.16
2743 3456 7.781324 ATAGTGGAATGTTTGAATGGAAGTT 57.219 32.000 0.00 0.00 0.00 2.66
2744 3457 7.781324 AATAGTGGAATGTTTGAATGGAAGT 57.219 32.000 0.00 0.00 0.00 3.01
2745 3458 9.492973 AAAAATAGTGGAATGTTTGAATGGAAG 57.507 29.630 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.