AutoCloner

Multiple sequence alignment - TraesCS7A01G275400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G275400	chr7A	100.000	2330	0	0	1	2330	287864152	287861823	0.000000e+00	4303
1	TraesCS7A01G275400	chr7A	94.620	855	42	3	653	1504	287891134	287890281	0.000000e+00	1321
2	TraesCS7A01G275400	chr7A	82.540	756	57	26	1637	2330	287889474	287888732	1.540000e-166	595
3	TraesCS7A01G275400	chr7A	86.035	401	50	4	32	427	287895541	287895142	2.140000e-115	425
4	TraesCS7A01G275400	chr7D	95.755	1013	42	1	493	1504	264327726	264326714	0.000000e+00	1631
5	TraesCS7A01G275400	chr7D	93.733	1085	64	4	423	1504	264362636	264361553	0.000000e+00	1624
6	TraesCS7A01G275400	chr7D	94.021	853	48	3	653	1504	264340339	264339489	0.000000e+00	1290
7	TraesCS7A01G275400	chr7D	94.571	700	36	2	806	1504	264372120	264371422	0.000000e+00	1081
8	TraesCS7A01G275400	chr7D	91.017	757	29	11	1611	2330	264325778	264325024	0.000000e+00	985
9	TraesCS7A01G275400	chr7D	88.737	586	35	9	1771	2325	264360519	264359934	0.000000e+00	688
10	TraesCS7A01G275400	chr7D	93.534	464	21	3	1	463	264328175	264327720	0.000000e+00	682
11	TraesCS7A01G275400	chr7D	87.692	585	40	11	1771	2330	264370387	264369810	0.000000e+00	652
12	TraesCS7A01G275400	chr7D	85.810	599	41	11	1771	2328	264338484	264337889	1.540000e-166	595
13	TraesCS7A01G275400	chr7D	86.534	401	48	4	32	427	264344769	264344370	9.890000e-119	436
14	TraesCS7A01G275400	chr7B	93.167	1083	69	4	426	1504	244646837	244645756	0.000000e+00	1585
15	TraesCS7A01G275400	chr7B	93.787	853	52	1	653	1504	244652999	244652147	0.000000e+00	1280
16	TraesCS7A01G275400	chr7B	95.268	803	37	1	703	1504	244694347	244693545	0.000000e+00	1271
17	TraesCS7A01G275400	chr7B	95.143	700	32	2	806	1504	244717730	244717032	0.000000e+00	1103
18	TraesCS7A01G275400	chr7B	84.792	914	65	26	1488	2330	244651520	244650610	0.000000e+00	850
19	TraesCS7A01G275400	chr7B	81.547	905	101	29	1483	2330	244716348	244715453	0.000000e+00	686
20	TraesCS7A01G275400	chr7B	87.245	588	41	11	1771	2330	244692524	244691943	7.020000e-180	640
21	TraesCS7A01G275400	chr7B	85.320	579	33	22	1771	2330	244644436	244643891	3.380000e-153	551
22	TraesCS7A01G275400	chr7B	87.917	240	23	5	423	656	244694583	244694344	6.340000e-71	278
23	TraesCS7A01G275400	chr7B	81.250	304	41	9	1483	1772	244692874	244692573	5.010000e-57	231
24	TraesCS7A01G275400	chr7B	87.970	133	16	0	1	133	244654815	244654683	8.620000e-35	158
25	TraesCS7A01G275400	chrUn	93.548	155	10	0	2176	2330	284875229	284875075	5.010000e-57	231

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G275400	chr7A	287861823	287864152	2329	True	4303.000000	4303	100.000000	1	2330	1	chr7A.!!$R1	2329
1	TraesCS7A01G275400	chr7A	287888732	287891134	2402	True	958.000000	1321	88.580000	653	2330	2	chr7A.!!$R3	1677
2	TraesCS7A01G275400	chr7D	264359934	264362636	2702	True	1156.000000	1624	91.235000	423	2325	2	chr7D.!!$R4	1902
3	TraesCS7A01G275400	chr7D	264325024	264328175	3151	True	1099.333333	1631	93.435333	1	2330	3	chr7D.!!$R2	2329
4	TraesCS7A01G275400	chr7D	264337889	264340339	2450	True	942.500000	1290	89.915500	653	2328	2	chr7D.!!$R3	1675
5	TraesCS7A01G275400	chr7D	264369810	264372120	2310	True	866.500000	1081	91.131500	806	2330	2	chr7D.!!$R5	1524
6	TraesCS7A01G275400	chr7B	244715453	244717730	2277	True	894.500000	1103	88.345000	806	2330	2	chr7B.!!$R3	1524
7	TraesCS7A01G275400	chr7B	244643891	244654815	10924	True	884.800000	1585	89.007200	1	2330	5	chr7B.!!$R1	2329
8	TraesCS7A01G275400	chr7B	244691943	244694583	2640	True	605.000000	1271	87.920000	423	2330	4	chr7B.!!$R2	1907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
171	804	0.179045	CCCCTAGCCTCCAAACGATG	60.179	60.0	0.0	0.0	0.00	3.84	F
270	904	0.442310	CGTGTCACCACTAAATGCGG	59.558	55.0	0.0	0.0	39.55	5.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1049	8692	0.540923	AGATCTTGAGGCTGGAGCAC	59.459	55.0	0.0	0.0	44.36	4.4	R
1407	9050	0.684535	TGCATGAGGACTTCACCGAA	59.315	50.0	0.0	0.0	38.99	4.3	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	4.870363	AGTTTTGCATGTGTATGGTGTTC	58.130	39.130	0.00	0.00	34.79	3.18
91	92	6.393171	AGGCATCTTTTTGCTAAGCTTAAAG	58.607	36.000	7.74	9.65	42.38	1.85
171	804	0.179045	CCCCTAGCCTCCAAACGATG	60.179	60.000	0.00	0.00	0.00	3.84
246	880	3.146066	ACACGTGTTGAACATGCCTTAT	58.854	40.909	17.22	0.00	38.65	1.73
250	884	1.824230	TGTTGAACATGCCTTATGCCC	59.176	47.619	0.00	0.00	40.59	5.36
252	886	0.751277	TGAACATGCCTTATGCCCCG	60.751	55.000	0.00	0.00	40.59	5.73
268	902	0.802494	CCCGTGTCACCACTAAATGC	59.198	55.000	0.00	0.00	39.55	3.56
270	904	0.442310	CGTGTCACCACTAAATGCGG	59.558	55.000	0.00	0.00	39.55	5.69
277	911	2.038269	CACTAAATGCGGCGTGGGT	61.038	57.895	9.37	0.00	0.00	4.51
459	1707	4.556942	ACGTGCACAAATGATATGGATG	57.443	40.909	18.64	0.00	0.00	3.51
460	1708	3.243168	ACGTGCACAAATGATATGGATGC	60.243	43.478	18.64	0.00	0.00	3.91
461	1709	3.645884	GTGCACAAATGATATGGATGCC	58.354	45.455	13.17	0.00	0.00	4.40
462	1710	3.068448	GTGCACAAATGATATGGATGCCA	59.932	43.478	13.17	0.00	38.19	4.92
463	1711	3.705072	TGCACAAATGATATGGATGCCAA	59.295	39.130	0.00	0.00	36.95	4.52
464	1712	4.202172	TGCACAAATGATATGGATGCCAAG	60.202	41.667	0.00	0.00	36.95	3.61
465	1713	4.202182	GCACAAATGATATGGATGCCAAGT	60.202	41.667	0.00	0.00	36.95	3.16
466	1714	5.009911	GCACAAATGATATGGATGCCAAGTA	59.990	40.000	0.00	0.00	36.95	2.24
467	1715	6.441274	CACAAATGATATGGATGCCAAGTAC	58.559	40.000	0.00	0.00	36.95	2.73
468	1716	5.536161	ACAAATGATATGGATGCCAAGTACC	59.464	40.000	0.00	0.00	36.95	3.34
469	1717	3.401033	TGATATGGATGCCAAGTACCG	57.599	47.619	0.00	0.00	36.95	4.02
470	1718	2.969262	TGATATGGATGCCAAGTACCGA	59.031	45.455	0.00	0.00	36.95	4.69
471	1719	3.006859	TGATATGGATGCCAAGTACCGAG	59.993	47.826	0.00	0.00	36.95	4.63
472	1720	1.204146	ATGGATGCCAAGTACCGAGT	58.796	50.000	0.00	0.00	36.95	4.18
473	1721	1.855295	TGGATGCCAAGTACCGAGTA	58.145	50.000	0.00	0.00	0.00	2.59
474	1722	2.394632	TGGATGCCAAGTACCGAGTAT	58.605	47.619	0.00	0.00	0.00	2.12
475	1723	2.364324	TGGATGCCAAGTACCGAGTATC	59.636	50.000	0.00	0.00	0.00	2.24
476	1724	2.364324	GGATGCCAAGTACCGAGTATCA	59.636	50.000	6.91	0.00	33.17	2.15
477	1725	3.006967	GGATGCCAAGTACCGAGTATCAT	59.993	47.826	6.91	0.00	33.17	2.45
478	1726	4.503296	GGATGCCAAGTACCGAGTATCATT	60.503	45.833	6.91	0.00	33.17	2.57
479	1727	5.279306	GGATGCCAAGTACCGAGTATCATTA	60.279	44.000	6.91	0.00	33.17	1.90
480	1728	5.196341	TGCCAAGTACCGAGTATCATTAG	57.804	43.478	0.00	0.00	33.17	1.73
481	1729	4.891168	TGCCAAGTACCGAGTATCATTAGA	59.109	41.667	0.00	0.00	33.17	2.10
482	1730	5.361571	TGCCAAGTACCGAGTATCATTAGAA	59.638	40.000	0.00	0.00	33.17	2.10
483	1731	5.921408	GCCAAGTACCGAGTATCATTAGAAG	59.079	44.000	0.00	0.00	33.17	2.85
484	1732	6.461231	GCCAAGTACCGAGTATCATTAGAAGT	60.461	42.308	0.00	0.00	33.17	3.01
485	1733	7.255381	GCCAAGTACCGAGTATCATTAGAAGTA	60.255	40.741	0.00	0.00	33.17	2.24
486	1734	8.074972	CCAAGTACCGAGTATCATTAGAAGTAC	58.925	40.741	0.00	0.00	33.17	2.73
487	1735	8.618677	CAAGTACCGAGTATCATTAGAAGTACA	58.381	37.037	0.00	0.00	32.07	2.90
488	1736	8.152309	AGTACCGAGTATCATTAGAAGTACAC	57.848	38.462	0.00	0.00	32.07	2.90
489	1737	6.057627	ACCGAGTATCATTAGAAGTACACG	57.942	41.667	0.00	0.00	33.17	4.49
490	1738	5.819379	ACCGAGTATCATTAGAAGTACACGA	59.181	40.000	0.00	0.00	34.56	4.35
491	1739	6.134730	CCGAGTATCATTAGAAGTACACGAC	58.865	44.000	0.00	0.00	34.56	4.34
492	1740	5.839753	CGAGTATCATTAGAAGTACACGACG	59.160	44.000	0.00	0.00	34.56	5.12
493	1741	6.292008	CGAGTATCATTAGAAGTACACGACGA	60.292	42.308	0.00	0.00	34.56	4.20
494	1742	7.493743	AGTATCATTAGAAGTACACGACGAT	57.506	36.000	0.00	0.00	0.00	3.73
550	1799	2.354199	CGCCTTGCCAACAAACAAATTT	59.646	40.909	0.00	0.00	34.74	1.82
616	1865	6.306117	GGATGCAAATAAAAACAAAGCAATGC	59.694	34.615	0.00	0.00	33.91	3.56
787	8427	8.774890	TTAATATACAAGGTACGAACAAGCAA	57.225	30.769	0.00	0.00	0.00	3.91
805	8445	2.677037	GCAAGTAGTTATGGACCAGCGT	60.677	50.000	0.00	0.00	0.00	5.07
828	8468	3.693085	GGAATCTCAGAAGCATGCAAAGA	59.307	43.478	21.98	14.20	0.00	2.52
953	8596	4.283212	CCTTTAAAAGGTGGAAGCCAATCA	59.717	41.667	0.00	0.00	43.95	2.57
955	8598	1.247567	AAAGGTGGAAGCCAATCACG	58.752	50.000	0.00	0.00	34.18	4.35
981	8624	3.748048	TGCAAGAGTAGCAGATGTTGAAC	59.252	43.478	0.00	0.00	37.02	3.18
1049	8692	2.609459	CCAATCTCCGGAACAGAATTCG	59.391	50.000	5.23	0.00	0.00	3.34
1118	8761	0.821711	TCCTCCTTGCAAACAACCGG	60.822	55.000	0.00	0.00	0.00	5.28
1128	8771	2.159156	GCAAACAACCGGGTTCTTCTTT	60.159	45.455	10.04	2.85	0.00	2.52
1163	8806	2.026822	AGACGAGAGACCATTTTGGCAT	60.027	45.455	0.00	0.00	42.67	4.40
1176	8819	1.712401	TTGGCATTGCGATTTGCTTC	58.288	45.000	1.91	0.00	46.63	3.86
1226	8869	1.219213	AGAGGTGGTGATCTCCCTAGG	59.781	57.143	11.24	0.06	28.07	3.02
1268	8911	1.821061	CTGCAGTCCTCCTTGTCGGT	61.821	60.000	5.25	0.00	0.00	4.69
1321	8964	0.035458	CTTCGCCTTCTTCACCAGGT	59.965	55.000	0.00	0.00	32.06	4.00
1407	9050	5.773680	CAGATCTTGGATAATGGCCTTCAAT	59.226	40.000	3.32	0.00	0.00	2.57
1492	9135	2.232208	CCTTCCAACATCTTCCTTTGCC	59.768	50.000	0.00	0.00	0.00	4.52
1496	9139	1.068333	CAACATCTTCCTTTGCCGTGG	60.068	52.381	0.00	0.00	0.00	4.94
1498	9141	1.004745	ACATCTTCCTTTGCCGTGGAT	59.995	47.619	0.00	0.00	31.76	3.41
1507	9150	1.953559	TTGCCGTGGATAGCAAGATC	58.046	50.000	0.00	0.00	43.74	2.75
1540	9916	1.321474	TCCTTTGCTTGTTGCTGAGG	58.679	50.000	0.00	0.00	42.05	3.86
1567	9944	3.301794	TGGCATCTGAATAACATGGCT	57.698	42.857	0.00	0.00	35.83	4.75
1593	9970	6.353323	TCTTGTAGAGACACATTCCAAAACA	58.647	36.000	0.00	0.00	34.48	2.83
1600	9977	4.081917	AGACACATTCCAAAACACGGTTTT	60.082	37.500	8.40	8.40	0.00	2.43
1649	10148	2.159156	GCCAGCAATGATGAGCATTTCA	60.159	45.455	0.00	0.00	44.68	2.69
1658	10450	7.011763	GCAATGATGAGCATTTCAGAGTAACTA	59.988	37.037	0.00	0.00	44.68	2.24
1704	10496	7.500892	TGAGTTAAATGCTCCAGAGTTGTTTTA	59.499	33.333	0.00	0.00	32.31	1.52
1744	10546	4.277672	CCAAGCTATCAGCAGCATAAACAT	59.722	41.667	0.00	0.00	45.56	2.71
1749	10551	8.174733	AGCTATCAGCAGCATAAACATTAAAT	57.825	30.769	0.00	0.00	45.56	1.40
1944	10815	0.822164	TTACTTCAGTAGGAGCCGCC	59.178	55.000	0.00	0.00	0.00	6.13
2079	10961	1.450312	CCCATCTTGGTCAGACGGC	60.450	63.158	0.00	0.00	32.99	5.68
2090	10982	1.079543	CAGACGGCTGAAGGACTGG	60.080	63.158	14.96	0.00	45.17	4.00
2188	11092	2.497273	TGCAAGATAGTGCTGTAGCTCA	59.503	45.455	5.38	0.00	45.17	4.26
2250	11187	4.980339	TTGGCTGCATATGATCTCCTTA	57.020	40.909	6.97	0.00	0.00	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
171	804	1.279271	ACCTGGCAGAGGATGTGTAAC	59.721	52.381	17.94	0.00	46.33	2.50
268	902	1.167781	ACAAAGGTTAACCCACGCCG	61.168	55.000	21.30	6.77	36.42	6.46
270	904	3.892522	CTTTACAAAGGTTAACCCACGC	58.107	45.455	21.30	0.00	36.42	5.34
439	1647	3.302555	GCATCCATATCATTTGTGCACG	58.697	45.455	13.13	0.00	0.00	5.34
459	1707	5.449107	TCTAATGATACTCGGTACTTGGC	57.551	43.478	0.00	0.00	0.00	4.52
460	1708	7.040473	ACTTCTAATGATACTCGGTACTTGG	57.960	40.000	0.00	0.00	0.00	3.61
461	1709	8.618677	TGTACTTCTAATGATACTCGGTACTTG	58.381	37.037	0.00	0.00	0.00	3.16
462	1710	8.619546	GTGTACTTCTAATGATACTCGGTACTT	58.380	37.037	0.00	0.00	0.00	2.24
463	1711	7.042187	CGTGTACTTCTAATGATACTCGGTACT	60.042	40.741	0.00	0.00	33.29	2.73
464	1712	7.042456	TCGTGTACTTCTAATGATACTCGGTAC	60.042	40.741	0.00	0.00	36.01	3.34
465	1713	6.986231	TCGTGTACTTCTAATGATACTCGGTA	59.014	38.462	0.00	0.00	36.01	4.02
466	1714	5.819379	TCGTGTACTTCTAATGATACTCGGT	59.181	40.000	0.00	0.00	36.01	4.69
467	1715	6.134730	GTCGTGTACTTCTAATGATACTCGG	58.865	44.000	0.00	0.00	36.01	4.63
468	1716	5.839753	CGTCGTGTACTTCTAATGATACTCG	59.160	44.000	0.00	0.00	36.42	4.18
469	1717	6.941802	TCGTCGTGTACTTCTAATGATACTC	58.058	40.000	0.00	0.00	0.00	2.59
470	1718	6.915544	TCGTCGTGTACTTCTAATGATACT	57.084	37.500	0.00	0.00	0.00	2.12
471	1719	7.323177	GGAATCGTCGTGTACTTCTAATGATAC	59.677	40.741	0.00	0.00	0.00	2.24
472	1720	7.012610	TGGAATCGTCGTGTACTTCTAATGATA	59.987	37.037	0.00	0.00	0.00	2.15
473	1721	6.183360	TGGAATCGTCGTGTACTTCTAATGAT	60.183	38.462	0.00	0.00	0.00	2.45
474	1722	5.124297	TGGAATCGTCGTGTACTTCTAATGA	59.876	40.000	0.00	0.00	0.00	2.57
475	1723	5.337554	TGGAATCGTCGTGTACTTCTAATG	58.662	41.667	0.00	0.00	0.00	1.90
476	1724	5.356190	TCTGGAATCGTCGTGTACTTCTAAT	59.644	40.000	0.00	0.00	0.00	1.73
477	1725	4.696877	TCTGGAATCGTCGTGTACTTCTAA	59.303	41.667	0.00	0.00	0.00	2.10
478	1726	4.256110	TCTGGAATCGTCGTGTACTTCTA	58.744	43.478	0.00	0.00	0.00	2.10
479	1727	3.079578	TCTGGAATCGTCGTGTACTTCT	58.920	45.455	0.00	0.00	0.00	2.85
480	1728	3.482722	TCTGGAATCGTCGTGTACTTC	57.517	47.619	0.00	0.00	0.00	3.01
481	1729	3.928727	TTCTGGAATCGTCGTGTACTT	57.071	42.857	0.00	0.00	0.00	2.24
482	1730	3.928727	TTTCTGGAATCGTCGTGTACT	57.071	42.857	0.00	0.00	0.00	2.73
483	1731	5.526010	AATTTTCTGGAATCGTCGTGTAC	57.474	39.130	0.00	0.00	0.00	2.90
484	1732	6.203145	TGAAAATTTTCTGGAATCGTCGTGTA	59.797	34.615	26.73	3.03	38.02	2.90
485	1733	5.008217	TGAAAATTTTCTGGAATCGTCGTGT	59.992	36.000	26.73	0.00	38.02	4.49
486	1734	5.448438	TGAAAATTTTCTGGAATCGTCGTG	58.552	37.500	26.73	0.00	38.02	4.35
487	1735	5.682943	TGAAAATTTTCTGGAATCGTCGT	57.317	34.783	26.73	0.00	38.02	4.34
488	1736	6.984740	TTTGAAAATTTTCTGGAATCGTCG	57.015	33.333	26.73	0.00	38.02	5.12
489	1737	8.764287	ACAATTTGAAAATTTTCTGGAATCGTC	58.236	29.630	26.73	2.84	36.52	4.20
490	1738	8.661352	ACAATTTGAAAATTTTCTGGAATCGT	57.339	26.923	26.73	17.42	36.52	3.73
491	1739	9.934190	AAACAATTTGAAAATTTTCTGGAATCG	57.066	25.926	26.73	16.93	36.52	3.34
616	1865	2.270205	CCACACAGCCTAGCCTGG	59.730	66.667	5.60	0.00	37.16	4.45
787	8427	1.480954	CCACGCTGGTCCATAACTACT	59.519	52.381	0.00	0.00	31.35	2.57
805	8445	2.793288	TGCATGCTTCTGAGATTCCA	57.207	45.000	20.33	0.00	0.00	3.53
828	8468	7.765819	TGATCGAACTCATACAGTGAATTCAAT	59.234	33.333	10.35	6.06	41.84	2.57
953	8596	2.432628	GCTACTCTTGCACCGCGT	60.433	61.111	4.92	0.00	0.00	6.01
955	8598	0.460987	ATCTGCTACTCTTGCACCGC	60.461	55.000	0.00	0.00	36.37	5.68
1049	8692	0.540923	AGATCTTGAGGCTGGAGCAC	59.459	55.000	0.00	0.00	44.36	4.40
1118	8761	4.309933	CAAGGCATTCCAAAAGAAGAACC	58.690	43.478	0.00	0.00	38.07	3.62
1128	8771	0.690192	TCGTCTCCAAGGCATTCCAA	59.310	50.000	0.00	0.00	33.74	3.53
1163	8806	1.870402	TCTTGTCGAAGCAAATCGCAA	59.130	42.857	0.00	12.11	46.13	4.85
1176	8819	3.050619	GTCAACAGTACACCTCTTGTCG	58.949	50.000	0.00	0.00	39.91	4.35
1268	8911	0.952010	GGCCGCGAAGAAGGTTACAA	60.952	55.000	8.23	0.00	0.00	2.41
1321	8964	3.516586	TCAAGATCCAGTCTTACACCCA	58.483	45.455	0.00	0.00	45.35	4.51
1407	9050	0.684535	TGCATGAGGACTTCACCGAA	59.315	50.000	0.00	0.00	38.99	4.30
1464	9107	3.888930	GGAAGATGTTGGAAGGTGAAACA	59.111	43.478	0.00	0.00	39.98	2.83
1496	9139	7.233389	TCCTTATACAGTGGATCTTGCTATC	57.767	40.000	0.00	0.00	0.00	2.08
1505	9148	5.370880	AGCAAAGGATCCTTATACAGTGGAT	59.629	40.000	27.29	4.77	42.65	3.41
1507	9150	5.041191	AGCAAAGGATCCTTATACAGTGG	57.959	43.478	27.29	10.33	34.84	4.00
1540	9916	5.565592	TGTTATTCAGATGCCATGTGTTC	57.434	39.130	1.40	0.00	0.00	3.18
1567	9944	8.154203	TGTTTTGGAATGTGTCTCTACAAGATA	58.846	33.333	0.00	0.00	37.36	1.98
1593	9970	7.333323	AGCTAATACCATACTGTTAAAACCGT	58.667	34.615	0.00	0.00	0.00	4.83
1600	9977	9.976511	GTCATACAAGCTAATACCATACTGTTA	57.023	33.333	0.00	0.00	0.00	2.41
1704	10496	2.839486	TGGACAGCGTCTTCAAGAAT	57.161	45.000	8.26	0.00	32.47	2.40
1911	10782	4.943705	ACTGAAGTAAATTGTGATGCCGAT	59.056	37.500	0.00	0.00	0.00	4.18
1944	10815	2.189594	TCAATGCTTCAGTCACCCAG	57.810	50.000	0.00	0.00	0.00	4.45
2079	10961	2.836981	AGACCAAGATCCAGTCCTTCAG	59.163	50.000	4.27	0.00	0.00	3.02
2188	11092	2.307098	ACAAAGATAGGCTGTGGAGCTT	59.693	45.455	0.00	0.00	45.44	3.74

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.