Multiple sequence alignment - TraesCS7A01G273700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G273700 chr7A 100.000 3058 0 0 1 3058 287255500 287252443 0.000000e+00 5648.0
1 TraesCS7A01G273700 chr7A 88.889 117 6 1 1854 1970 260875307 260875416 1.480000e-28 137.0
2 TraesCS7A01G273700 chr7B 93.242 1598 63 21 221 1818 244309584 244308032 0.000000e+00 2311.0
3 TraesCS7A01G273700 chr7B 87.688 666 61 12 2400 3058 608209968 608209317 0.000000e+00 756.0
4 TraesCS7A01G273700 chr7B 82.680 306 43 9 1984 2284 244308021 244307721 2.340000e-66 263.0
5 TraesCS7A01G273700 chr7D 93.013 1603 66 15 221 1819 264009380 264007820 0.000000e+00 2298.0
6 TraesCS7A01G273700 chr7D 86.593 634 51 17 2436 3058 20515671 20515061 0.000000e+00 669.0
7 TraesCS7A01G273700 chr7D 86.689 601 48 17 2469 3058 613420770 613420191 3.330000e-179 638.0
8 TraesCS7A01G273700 chr7D 83.505 679 76 24 2400 3047 582046790 582047463 4.360000e-168 601.0
9 TraesCS7A01G273700 chr7D 84.642 293 30 5 1984 2274 264007810 264007531 8.350000e-71 278.0
10 TraesCS7A01G273700 chr7D 91.011 178 13 3 17 193 237158773 237158598 1.420000e-58 237.0
11 TraesCS7A01G273700 chr7D 90.751 173 15 1 16 187 52255648 52255820 2.370000e-56 230.0
12 TraesCS7A01G273700 chr2D 85.944 683 70 20 2399 3058 38539937 38539258 0.000000e+00 706.0
13 TraesCS7A01G273700 chr2D 88.675 415 37 7 2653 3058 573259789 573259376 5.890000e-137 497.0
14 TraesCS7A01G273700 chr2D 85.306 490 55 12 2582 3058 73015865 73015380 9.850000e-135 490.0
15 TraesCS7A01G273700 chr2D 86.486 148 19 1 1824 1970 521764714 521764861 8.770000e-36 161.0
16 TraesCS7A01G273700 chr5A 86.026 687 50 24 2403 3058 38822044 38821373 0.000000e+00 695.0
17 TraesCS7A01G273700 chr5A 93.793 145 8 1 1826 1969 676593918 676593774 1.850000e-52 217.0
18 TraesCS7A01G273700 chr4A 85.522 670 71 15 2400 3058 389965202 389965856 0.000000e+00 676.0
19 TraesCS7A01G273700 chr4A 92.727 165 11 1 17 180 537548427 537548591 1.420000e-58 237.0
20 TraesCS7A01G273700 chr5B 84.435 681 66 22 2400 3058 11725870 11726532 4.300000e-178 634.0
21 TraesCS7A01G273700 chr5B 85.202 642 66 20 2400 3020 11697332 11697965 1.550000e-177 632.0
22 TraesCS7A01G273700 chr5B 85.047 642 67 20 2400 3020 11715819 11716452 7.200000e-176 627.0
23 TraesCS7A01G273700 chr5B 85.047 642 67 18 2400 3020 11732573 11733206 7.200000e-176 627.0
24 TraesCS7A01G273700 chr5B 84.759 643 68 20 2400 3020 11722957 11723591 4.330000e-173 617.0
25 TraesCS7A01G273700 chr3A 84.593 675 64 17 2395 3058 33606135 33606780 4.300000e-178 634.0
26 TraesCS7A01G273700 chr3D 84.195 658 74 19 2400 3030 482314579 482313925 2.020000e-171 612.0
27 TraesCS7A01G273700 chr3D 92.169 166 12 1 16 180 550509431 550509596 1.830000e-57 233.0
28 TraesCS7A01G273700 chr3D 90.449 178 14 3 17 193 258242505 258242680 6.590000e-57 231.0
29 TraesCS7A01G273700 chr3D 100.000 28 0 0 2306 2333 2908477 2908504 6.000000e-03 52.8
30 TraesCS7A01G273700 chr1D 83.866 657 73 21 2400 3028 66106927 66107578 2.030000e-166 595.0
31 TraesCS7A01G273700 chr1D 92.308 169 12 1 15 182 422051587 422051419 3.940000e-59 239.0
32 TraesCS7A01G273700 chr1D 91.329 173 14 1 9 180 140137153 140136981 5.100000e-58 235.0
33 TraesCS7A01G273700 chr1D 92.121 165 12 1 17 180 1590364 1590528 6.590000e-57 231.0
34 TraesCS7A01G273700 chr1D 91.667 168 13 1 17 183 356185773 356185940 6.590000e-57 231.0
35 TraesCS7A01G273700 chr1D 91.667 168 13 1 15 181 414878412 414878245 6.590000e-57 231.0
36 TraesCS7A01G273700 chr1D 90.698 172 15 1 16 186 295840312 295840141 8.530000e-56 228.0
37 TraesCS7A01G273700 chr1D 100.000 31 0 0 2306 2336 62867383 62867413 1.180000e-04 58.4
38 TraesCS7A01G273700 chr6D 88.350 412 39 6 2655 3058 445164494 445164084 1.270000e-133 486.0
39 TraesCS7A01G273700 chr6D 91.124 169 14 1 17 184 318765119 318764951 8.530000e-56 228.0
40 TraesCS7A01G273700 chr6D 91.515 165 13 1 17 180 203458936 203459100 3.070000e-55 226.0
41 TraesCS7A01G273700 chr6D 91.071 168 14 1 17 183 218407374 218407207 3.070000e-55 226.0
42 TraesCS7A01G273700 chr6D 90.173 173 14 3 17 188 41542486 41542656 3.970000e-54 222.0
43 TraesCS7A01G273700 chr6A 96.000 150 5 1 1822 1970 594749704 594749853 3.050000e-60 243.0
44 TraesCS7A01G273700 chr6A 88.976 127 14 0 1844 1970 153110118 153109992 1.140000e-34 158.0
45 TraesCS7A01G273700 chr5D 92.814 167 11 1 15 180 48668964 48669130 1.100000e-59 241.0
46 TraesCS7A01G273700 chr5D 91.011 178 13 3 17 193 340690755 340690580 1.420000e-58 237.0
47 TraesCS7A01G273700 chr5D 91.228 171 13 2 12 180 447821910 447821740 6.590000e-57 231.0
48 TraesCS7A01G273700 chr5D 89.888 178 15 3 17 193 276657796 276657971 3.070000e-55 226.0
49 TraesCS7A01G273700 chr4D 92.727 165 11 1 17 180 243613272 243613436 1.420000e-58 237.0
50 TraesCS7A01G273700 chr4D 91.071 168 14 1 17 183 124786893 124787060 3.070000e-55 226.0
51 TraesCS7A01G273700 chr4D 90.588 170 15 1 12 180 457481046 457481215 1.100000e-54 224.0
52 TraesCS7A01G273700 chr4D 90.964 166 14 1 17 181 367796433 367796598 3.970000e-54 222.0
53 TraesCS7A01G273700 chr4D 88.950 181 16 4 10 188 28982874 28983052 1.430000e-53 220.0
54 TraesCS7A01G273700 chr4D 90.058 171 16 1 14 183 250701991 250701821 1.430000e-53 220.0
55 TraesCS7A01G273700 chr4D 90.476 168 15 1 17 183 430739171 430739338 1.430000e-53 220.0
56 TraesCS7A01G273700 chr4D 90.058 171 13 3 17 183 170348694 170348524 5.130000e-53 219.0
57 TraesCS7A01G273700 chr4D 90.058 171 13 3 17 183 227873958 227873788 5.130000e-53 219.0
58 TraesCS7A01G273700 chr4D 88.827 179 15 5 17 192 473849063 473848887 6.640000e-52 215.0
59 TraesCS7A01G273700 chr4D 100.000 31 0 0 2306 2336 45672432 45672462 1.180000e-04 58.4
60 TraesCS7A01G273700 chrUn 90.361 166 15 1 17 181 24831249 24831414 1.850000e-52 217.0
61 TraesCS7A01G273700 chrUn 90.361 166 15 1 17 181 24833767 24833932 1.850000e-52 217.0
62 TraesCS7A01G273700 chrUn 90.361 166 15 1 17 181 212860730 212860895 1.850000e-52 217.0
63 TraesCS7A01G273700 chrUn 89.759 166 16 1 17 181 91482718 91482553 8.590000e-51 211.0
64 TraesCS7A01G273700 chrUn 89.759 166 16 1 16 180 112299382 112299217 8.590000e-51 211.0
65 TraesCS7A01G273700 chrUn 88.953 172 18 1 12 182 272972337 272972166 8.590000e-51 211.0
66 TraesCS7A01G273700 chrUn 88.953 172 18 1 12 182 347397217 347397388 8.590000e-51 211.0
67 TraesCS7A01G273700 chrUn 88.824 170 18 1 17 185 105244422 105244591 1.110000e-49 207.0
68 TraesCS7A01G273700 chrUn 89.157 166 17 1 17 181 70231880 70231715 4.000000e-49 206.0
69 TraesCS7A01G273700 chr4B 88.806 134 14 1 1826 1958 665412125 665412258 2.440000e-36 163.0
70 TraesCS7A01G273700 chr3B 100.000 29 0 0 2304 2332 188409316 188409288 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G273700 chr7A 287252443 287255500 3057 True 5648.0 5648 100.0000 1 3058 1 chr7A.!!$R1 3057
1 TraesCS7A01G273700 chr7B 244307721 244309584 1863 True 1287.0 2311 87.9610 221 2284 2 chr7B.!!$R2 2063
2 TraesCS7A01G273700 chr7B 608209317 608209968 651 True 756.0 756 87.6880 2400 3058 1 chr7B.!!$R1 658
3 TraesCS7A01G273700 chr7D 264007531 264009380 1849 True 1288.0 2298 88.8275 221 2274 2 chr7D.!!$R4 2053
4 TraesCS7A01G273700 chr7D 20515061 20515671 610 True 669.0 669 86.5930 2436 3058 1 chr7D.!!$R1 622
5 TraesCS7A01G273700 chr7D 613420191 613420770 579 True 638.0 638 86.6890 2469 3058 1 chr7D.!!$R3 589
6 TraesCS7A01G273700 chr7D 582046790 582047463 673 False 601.0 601 83.5050 2400 3047 1 chr7D.!!$F2 647
7 TraesCS7A01G273700 chr2D 38539258 38539937 679 True 706.0 706 85.9440 2399 3058 1 chr2D.!!$R1 659
8 TraesCS7A01G273700 chr5A 38821373 38822044 671 True 695.0 695 86.0260 2403 3058 1 chr5A.!!$R1 655
9 TraesCS7A01G273700 chr4A 389965202 389965856 654 False 676.0 676 85.5220 2400 3058 1 chr4A.!!$F1 658
10 TraesCS7A01G273700 chr5B 11697332 11697965 633 False 632.0 632 85.2020 2400 3020 1 chr5B.!!$F1 620
11 TraesCS7A01G273700 chr5B 11715819 11716452 633 False 627.0 627 85.0470 2400 3020 1 chr5B.!!$F2 620
12 TraesCS7A01G273700 chr5B 11732573 11733206 633 False 627.0 627 85.0470 2400 3020 1 chr5B.!!$F3 620
13 TraesCS7A01G273700 chr5B 11722957 11726532 3575 False 625.5 634 84.5970 2400 3058 2 chr5B.!!$F4 658
14 TraesCS7A01G273700 chr3A 33606135 33606780 645 False 634.0 634 84.5930 2395 3058 1 chr3A.!!$F1 663
15 TraesCS7A01G273700 chr3D 482313925 482314579 654 True 612.0 612 84.1950 2400 3030 1 chr3D.!!$R1 630
16 TraesCS7A01G273700 chr1D 66106927 66107578 651 False 595.0 595 83.8660 2400 3028 1 chr1D.!!$F3 628
17 TraesCS7A01G273700 chrUn 24831249 24833932 2683 False 217.0 217 90.3610 17 181 2 chrUn.!!$F4 164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 337 0.183014 TAAACAACGACAGGGGCCAA 59.817 50.0 4.39 0.0 0.00 4.52 F
1913 3017 0.108615 ATCCAGCGTATATCAGCGGC 60.109 55.0 0.00 0.0 38.61 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 3036 0.035317 ATGGATGTGTGCACGACAGT 59.965 50.000 21.1 12.74 34.28 3.55 R
2811 4191 1.427753 ACTTGGAAACGAGGGGGAATT 59.572 47.619 0.0 0.00 46.96 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
181 183 9.158233 CTTATATTTTGAAACGAAGGGAGTACA 57.842 33.333 0.00 0.00 0.00 2.90
182 184 7.989416 ATATTTTGAAACGAAGGGAGTACAA 57.011 32.000 0.00 0.00 0.00 2.41
183 185 6.894339 ATTTTGAAACGAAGGGAGTACAAT 57.106 33.333 0.00 0.00 0.00 2.71
185 187 7.989416 TTTTGAAACGAAGGGAGTACAATAT 57.011 32.000 0.00 0.00 0.00 1.28
187 189 7.989416 TTGAAACGAAGGGAGTACAATATTT 57.011 32.000 0.00 0.00 0.00 1.40
188 190 7.605410 TGAAACGAAGGGAGTACAATATTTC 57.395 36.000 0.00 0.00 0.00 2.17
189 191 7.162761 TGAAACGAAGGGAGTACAATATTTCA 58.837 34.615 0.00 0.00 31.76 2.69
190 192 7.827236 TGAAACGAAGGGAGTACAATATTTCAT 59.173 33.333 0.00 0.00 29.84 2.57
191 193 7.787725 AACGAAGGGAGTACAATATTTCATC 57.212 36.000 0.00 0.00 0.00 2.92
192 194 6.289064 ACGAAGGGAGTACAATATTTCATCC 58.711 40.000 0.00 0.00 0.00 3.51
194 196 4.642429 AGGGAGTACAATATTTCATCCGC 58.358 43.478 0.00 0.00 0.00 5.54
195 197 4.102524 AGGGAGTACAATATTTCATCCGCA 59.897 41.667 0.00 0.00 0.00 5.69
196 198 4.819630 GGGAGTACAATATTTCATCCGCAA 59.180 41.667 0.00 0.00 0.00 4.85
197 199 5.298276 GGGAGTACAATATTTCATCCGCAAA 59.702 40.000 0.00 0.00 0.00 3.68
198 200 6.183360 GGGAGTACAATATTTCATCCGCAAAA 60.183 38.462 0.00 0.00 0.00 2.44
199 201 7.254852 GGAGTACAATATTTCATCCGCAAAAA 58.745 34.615 0.00 0.00 0.00 1.94
219 221 3.339253 AAAAATAGTCCGGCCGTAGTT 57.661 42.857 26.12 12.75 0.00 2.24
246 248 7.640597 ATGCTCTTATATGCATGCATGTAAT 57.359 32.000 35.40 26.64 46.58 1.89
261 263 4.282068 CATGTAATTGTAAGCATGTCCGC 58.718 43.478 0.00 0.00 35.36 5.54
264 266 5.119694 TGTAATTGTAAGCATGTCCGCATA 58.880 37.500 0.00 0.00 33.30 3.14
293 295 3.886123 CCAATCGATCCCCTAAAGTTGT 58.114 45.455 0.00 0.00 0.00 3.32
297 299 6.183360 CCAATCGATCCCCTAAAGTTGTTAAC 60.183 42.308 0.00 0.00 0.00 2.01
335 337 0.183014 TAAACAACGACAGGGGCCAA 59.817 50.000 4.39 0.00 0.00 4.52
336 338 1.106944 AAACAACGACAGGGGCCAAG 61.107 55.000 4.39 0.00 0.00 3.61
338 340 3.966543 AACGACAGGGGCCAAGGG 61.967 66.667 4.39 0.00 0.00 3.95
393 828 0.394488 TCTCTGGTGAGGTAGGAGCG 60.394 60.000 0.00 0.00 40.58 5.03
432 1249 3.895232 AACGGACACAGCAGAGATATT 57.105 42.857 0.00 0.00 0.00 1.28
497 1360 1.550524 TCGAGACATTCCAGGGACAAG 59.449 52.381 0.00 0.00 0.00 3.16
690 1608 0.543410 TGGAACGCTCCCAAGTCCTA 60.543 55.000 1.61 0.00 41.64 2.94
700 1618 4.463070 CTCCCAAGTCCTAGTCCTAGTAC 58.537 52.174 0.96 0.00 0.00 2.73
702 1620 4.543337 TCCCAAGTCCTAGTCCTAGTACTT 59.457 45.833 0.00 6.51 41.19 2.24
715 1633 5.753921 GTCCTAGTACTTGGTACGTACGTAT 59.246 44.000 29.05 16.22 43.05 3.06
936 1854 3.316588 GGCATCTATTCTCGTCTCAGTCA 59.683 47.826 0.00 0.00 0.00 3.41
965 1883 2.566529 CGTCCAGCAGCTACGTGA 59.433 61.111 9.24 0.00 32.16 4.35
966 1884 1.801913 CGTCCAGCAGCTACGTGAC 60.802 63.158 9.24 6.54 32.16 3.67
1128 2046 3.028921 GCAGGTGGAGGAGGAGCTG 62.029 68.421 0.00 0.00 40.06 4.24
1509 2610 1.446272 GGCGTTCAGGAAGAGGACG 60.446 63.158 0.00 0.00 34.43 4.79
1541 2645 2.737376 GGACGCCGAGAACACCAC 60.737 66.667 0.00 0.00 0.00 4.16
1542 2646 2.737376 GACGCCGAGAACACCACC 60.737 66.667 0.00 0.00 0.00 4.61
1543 2647 4.657824 ACGCCGAGAACACCACCG 62.658 66.667 0.00 0.00 0.00 4.94
1781 2885 0.991146 ATGCACAGTGGATGGTGGTA 59.009 50.000 6.78 0.00 35.58 3.25
1782 2886 0.324614 TGCACAGTGGATGGTGGTAG 59.675 55.000 1.84 0.00 35.58 3.18
1783 2887 0.613260 GCACAGTGGATGGTGGTAGA 59.387 55.000 1.84 0.00 35.58 2.59
1825 2929 7.041030 TGAGAGTTAGAATTAGGAGTATCAGCG 60.041 40.741 0.00 0.00 36.25 5.18
1826 2930 5.774630 AGTTAGAATTAGGAGTATCAGCGC 58.225 41.667 0.00 0.00 36.25 5.92
1827 2931 5.536916 AGTTAGAATTAGGAGTATCAGCGCT 59.463 40.000 2.64 2.64 36.25 5.92
1828 2932 4.250116 AGAATTAGGAGTATCAGCGCTG 57.750 45.455 31.53 31.53 36.25 5.18
1829 2933 2.447244 ATTAGGAGTATCAGCGCTGC 57.553 50.000 32.44 18.56 36.25 5.25
1830 2934 1.403814 TTAGGAGTATCAGCGCTGCT 58.596 50.000 32.44 25.61 40.77 4.24
1831 2935 2.271944 TAGGAGTATCAGCGCTGCTA 57.728 50.000 32.44 24.41 36.40 3.49
1832 2936 1.626686 AGGAGTATCAGCGCTGCTAT 58.373 50.000 32.44 22.97 36.40 2.97
1833 2937 2.796557 AGGAGTATCAGCGCTGCTATA 58.203 47.619 32.44 21.90 36.40 1.31
1834 2938 2.490115 AGGAGTATCAGCGCTGCTATAC 59.510 50.000 32.44 30.19 36.40 1.47
1835 2939 2.229062 GGAGTATCAGCGCTGCTATACA 59.771 50.000 33.32 20.06 36.40 2.29
1836 2940 3.238441 GAGTATCAGCGCTGCTATACAC 58.762 50.000 33.32 27.74 36.40 2.90
1837 2941 2.623416 AGTATCAGCGCTGCTATACACA 59.377 45.455 33.32 18.85 36.40 3.72
1838 2942 2.145958 ATCAGCGCTGCTATACACAG 57.854 50.000 32.44 5.01 36.40 3.66
1840 2944 2.021457 TCAGCGCTGCTATACACAGTA 58.979 47.619 32.44 7.78 36.40 2.74
1841 2945 2.120232 CAGCGCTGCTATACACAGTAC 58.880 52.381 26.68 0.00 36.40 2.73
1843 2947 1.121240 CGCTGCTATACACAGTACGC 58.879 55.000 0.00 0.00 37.47 4.42
1845 2949 1.533338 GCTGCTATACACAGTACGCGT 60.533 52.381 19.17 19.17 37.47 6.01
1846 2950 2.109463 CTGCTATACACAGTACGCGTG 58.891 52.381 24.59 8.01 40.32 5.34
1848 2952 1.844357 GCTATACACAGTACGCGTGTG 59.156 52.381 24.59 23.20 46.72 3.82
1851 2955 3.534160 CACAGTACGCGTGTGGAC 58.466 61.111 24.59 12.39 41.43 4.02
1864 2968 2.809010 TGGACGACTTGTGCACGA 59.191 55.556 13.13 9.87 44.74 4.35
1865 2969 1.590525 TGGACGACTTGTGCACGAC 60.591 57.895 13.13 0.00 44.74 4.34
1869 2973 2.237066 CGACTTGTGCACGACAGCA 61.237 57.895 13.13 0.00 43.35 4.41
1882 2986 3.409201 ACAGCACATGTCAAGCAGT 57.591 47.368 9.10 4.41 37.75 4.40
1883 2987 1.233019 ACAGCACATGTCAAGCAGTC 58.767 50.000 9.10 0.00 37.75 3.51
1884 2988 0.520404 CAGCACATGTCAAGCAGTCC 59.480 55.000 9.10 0.00 0.00 3.85
1886 2990 1.171308 GCACATGTCAAGCAGTCCAT 58.829 50.000 0.00 0.00 0.00 3.41
1900 3004 3.332919 CAGTCCATGCATACTATCCAGC 58.667 50.000 0.00 0.00 0.00 4.85
1902 3006 1.970640 TCCATGCATACTATCCAGCGT 59.029 47.619 0.00 0.00 0.00 5.07
1903 3007 3.056821 GTCCATGCATACTATCCAGCGTA 60.057 47.826 0.00 0.00 0.00 4.42
1904 3008 3.769300 TCCATGCATACTATCCAGCGTAT 59.231 43.478 0.00 0.00 0.00 3.06
1905 3009 4.953579 TCCATGCATACTATCCAGCGTATA 59.046 41.667 0.00 0.00 0.00 1.47
1906 3010 5.598417 TCCATGCATACTATCCAGCGTATAT 59.402 40.000 0.00 0.00 0.00 0.86
1907 3011 5.923114 CCATGCATACTATCCAGCGTATATC 59.077 44.000 0.00 0.00 0.00 1.63
1909 3013 6.136541 TGCATACTATCCAGCGTATATCAG 57.863 41.667 0.00 0.00 0.00 2.90
1910 3014 4.979197 GCATACTATCCAGCGTATATCAGC 59.021 45.833 0.00 0.00 0.00 4.26
1911 3015 3.766676 ACTATCCAGCGTATATCAGCG 57.233 47.619 0.00 0.00 38.61 5.18
1912 3016 2.423892 ACTATCCAGCGTATATCAGCGG 59.576 50.000 0.00 6.78 38.61 5.52
1913 3017 0.108615 ATCCAGCGTATATCAGCGGC 60.109 55.000 0.00 0.00 38.61 6.53
1914 3018 1.738099 CCAGCGTATATCAGCGGCC 60.738 63.158 0.00 0.00 38.61 6.13
1915 3019 2.088763 CAGCGTATATCAGCGGCCG 61.089 63.158 24.05 24.05 38.61 6.13
1918 3022 1.511305 CGTATATCAGCGGCCGGAT 59.489 57.895 29.38 23.29 0.00 4.18
1919 3023 0.108804 CGTATATCAGCGGCCGGATT 60.109 55.000 29.38 14.04 0.00 3.01
1920 3024 1.133598 CGTATATCAGCGGCCGGATTA 59.866 52.381 29.38 13.14 0.00 1.75
1921 3025 2.537401 GTATATCAGCGGCCGGATTAC 58.463 52.381 29.38 19.38 0.00 1.89
1922 3026 0.249398 ATATCAGCGGCCGGATTACC 59.751 55.000 29.38 8.93 0.00 2.85
1924 3028 4.169696 CAGCGGCCGGATTACCCA 62.170 66.667 29.38 0.00 34.14 4.51
1927 3031 2.357034 CGGCCGGATTACCCATCG 60.357 66.667 20.10 0.00 31.73 3.84
1928 3032 2.826702 GGCCGGATTACCCATCGT 59.173 61.111 5.05 0.00 31.73 3.73
1929 3033 1.301479 GGCCGGATTACCCATCGTC 60.301 63.158 5.05 0.00 31.73 4.20
1930 3034 1.301479 GCCGGATTACCCATCGTCC 60.301 63.158 5.05 0.00 31.73 4.79
1932 3036 1.404479 CCGGATTACCCATCGTCCCA 61.404 60.000 0.00 0.00 31.73 4.37
1933 3037 0.249741 CGGATTACCCATCGTCCCAC 60.250 60.000 0.00 0.00 31.73 4.61
1935 3039 1.202651 GGATTACCCATCGTCCCACTG 60.203 57.143 0.00 0.00 31.73 3.66
1937 3041 0.899720 TTACCCATCGTCCCACTGTC 59.100 55.000 0.00 0.00 0.00 3.51
1941 3045 2.094659 CATCGTCCCACTGTCGTGC 61.095 63.158 0.00 0.00 39.86 5.34
1942 3046 2.570284 ATCGTCCCACTGTCGTGCA 61.570 57.895 0.00 0.00 39.86 4.57
1945 3049 2.108157 TCCCACTGTCGTGCACAC 59.892 61.111 18.64 14.25 39.86 3.82
1946 3050 2.203001 CCCACTGTCGTGCACACA 60.203 61.111 18.64 17.85 39.86 3.72
1947 3051 1.597854 CCCACTGTCGTGCACACAT 60.598 57.895 18.64 7.79 39.86 3.21
1948 3052 1.568612 CCCACTGTCGTGCACACATC 61.569 60.000 18.64 4.23 39.86 3.06
1950 3054 0.879839 CACTGTCGTGCACACATCCA 60.880 55.000 18.64 4.32 33.82 3.41
1951 3055 0.035317 ACTGTCGTGCACACATCCAT 59.965 50.000 18.64 4.27 0.00 3.41
1952 3056 0.723414 CTGTCGTGCACACATCCATC 59.277 55.000 18.64 0.00 0.00 3.51
1953 3057 1.013524 TGTCGTGCACACATCCATCG 61.014 55.000 18.64 0.00 0.00 3.84
1954 3058 1.014044 GTCGTGCACACATCCATCGT 61.014 55.000 18.64 0.00 0.00 3.73
1955 3059 0.735978 TCGTGCACACATCCATCGTC 60.736 55.000 18.64 0.00 0.00 4.20
1956 3060 0.737367 CGTGCACACATCCATCGTCT 60.737 55.000 18.64 0.00 0.00 4.18
1957 3061 1.469079 CGTGCACACATCCATCGTCTA 60.469 52.381 18.64 0.00 0.00 2.59
1958 3062 2.799562 CGTGCACACATCCATCGTCTAT 60.800 50.000 18.64 0.00 0.00 1.98
1959 3063 3.550030 CGTGCACACATCCATCGTCTATA 60.550 47.826 18.64 0.00 0.00 1.31
1960 3064 3.736252 GTGCACACATCCATCGTCTATAC 59.264 47.826 13.17 0.00 0.00 1.47
1961 3065 3.383185 TGCACACATCCATCGTCTATACA 59.617 43.478 0.00 0.00 0.00 2.29
1962 3066 3.983988 GCACACATCCATCGTCTATACAG 59.016 47.826 0.00 0.00 0.00 2.74
1963 3067 3.983988 CACACATCCATCGTCTATACAGC 59.016 47.826 0.00 0.00 0.00 4.40
1964 3068 3.636764 ACACATCCATCGTCTATACAGCA 59.363 43.478 0.00 0.00 0.00 4.41
1966 3070 3.891977 ACATCCATCGTCTATACAGCAGT 59.108 43.478 0.00 0.00 0.00 4.40
1967 3071 4.342378 ACATCCATCGTCTATACAGCAGTT 59.658 41.667 0.00 0.00 0.00 3.16
1968 3072 5.163405 ACATCCATCGTCTATACAGCAGTTT 60.163 40.000 0.00 0.00 0.00 2.66
1970 3074 4.401202 TCCATCGTCTATACAGCAGTTTCA 59.599 41.667 0.00 0.00 0.00 2.69
1972 3076 6.264518 TCCATCGTCTATACAGCAGTTTCATA 59.735 38.462 0.00 0.00 0.00 2.15
1973 3077 6.584184 CCATCGTCTATACAGCAGTTTCATAG 59.416 42.308 0.00 0.00 0.00 2.23
1974 3078 6.073327 TCGTCTATACAGCAGTTTCATAGG 57.927 41.667 0.00 0.00 0.00 2.57
1975 3079 5.826208 TCGTCTATACAGCAGTTTCATAGGA 59.174 40.000 0.00 0.00 0.00 2.94
1976 3080 6.017026 TCGTCTATACAGCAGTTTCATAGGAG 60.017 42.308 0.00 0.00 0.00 3.69
1977 3081 6.238786 CGTCTATACAGCAGTTTCATAGGAGT 60.239 42.308 0.00 0.00 0.00 3.85
1979 3083 8.077386 GTCTATACAGCAGTTTCATAGGAGTAC 58.923 40.741 0.00 0.00 0.00 2.73
1980 3084 6.791867 ATACAGCAGTTTCATAGGAGTACA 57.208 37.500 0.00 0.00 0.00 2.90
1981 3085 5.078411 ACAGCAGTTTCATAGGAGTACAG 57.922 43.478 0.00 0.00 0.00 2.74
1982 3086 3.868077 CAGCAGTTTCATAGGAGTACAGC 59.132 47.826 0.00 2.39 0.00 4.40
2015 3126 7.009540 GGTGATTTTTCTTGAACTTCTGTTGTG 59.990 37.037 0.00 0.00 36.39 3.33
2047 3158 4.268167 CCTATCTATCTGTCCGTACGATCG 59.732 50.000 18.76 14.88 0.00 3.69
2078 3189 6.368213 CAAAAGAAATGAAATGGCTCAAAGC 58.632 36.000 0.00 0.00 41.46 3.51
2084 3195 8.098912 AGAAATGAAATGGCTCAAAGCTTTTAT 58.901 29.630 9.53 0.00 41.99 1.40
2085 3196 9.369904 GAAATGAAATGGCTCAAAGCTTTTATA 57.630 29.630 9.53 0.00 41.99 0.98
2086 3197 9.895138 AAATGAAATGGCTCAAAGCTTTTATAT 57.105 25.926 9.53 0.00 41.99 0.86
2089 3200 9.407380 TGAAATGGCTCAAAGCTTTTATATAGA 57.593 29.630 9.53 1.59 41.99 1.98
2092 3203 9.632638 AATGGCTCAAAGCTTTTATATAGAAGA 57.367 29.630 9.53 0.00 41.99 2.87
2095 3206 8.346300 GGCTCAAAGCTTTTATATAGAAGAACC 58.654 37.037 9.53 1.72 41.99 3.62
2096 3207 8.893727 GCTCAAAGCTTTTATATAGAAGAACCA 58.106 33.333 9.53 0.00 38.45 3.67
2098 3209 9.733556 TCAAAGCTTTTATATAGAAGAACCACA 57.266 29.630 9.53 0.00 0.00 4.17
2100 3211 9.959721 AAAGCTTTTATATAGAAGAACCACAGA 57.040 29.630 15.39 0.00 0.00 3.41
2102 3213 9.553064 AGCTTTTATATAGAAGAACCACAGATG 57.447 33.333 15.39 0.00 0.00 2.90
2103 3214 8.286097 GCTTTTATATAGAAGAACCACAGATGC 58.714 37.037 15.39 0.00 0.00 3.91
2119 3232 5.691754 CACAGATGCTTTTGTTTTACCTTCC 59.308 40.000 0.00 0.00 0.00 3.46
2122 3235 6.986231 CAGATGCTTTTGTTTTACCTTCCTTT 59.014 34.615 0.00 0.00 0.00 3.11
2139 3252 7.675619 ACCTTCCTTTATCTTGGTCAAATCAAT 59.324 33.333 0.00 0.00 0.00 2.57
2161 3332 8.233868 TCAATGTGAAACTAAATACAATCACCG 58.766 33.333 0.00 0.00 37.07 4.94
2162 3333 7.915293 ATGTGAAACTAAATACAATCACCGA 57.085 32.000 0.00 0.00 37.07 4.69
2163 3334 7.731882 TGTGAAACTAAATACAATCACCGAA 57.268 32.000 0.00 0.00 37.07 4.30
2164 3335 7.577979 TGTGAAACTAAATACAATCACCGAAC 58.422 34.615 0.00 0.00 37.07 3.95
2165 3336 7.226918 TGTGAAACTAAATACAATCACCGAACA 59.773 33.333 0.00 0.00 37.07 3.18
2166 3337 7.532884 GTGAAACTAAATACAATCACCGAACAC 59.467 37.037 0.00 0.00 32.96 3.32
2181 3352 3.371898 CCGAACACCGAAAATAGGGTAAC 59.628 47.826 0.00 0.00 41.76 2.50
2200 3371 3.229697 ACAAGAAAACCCTAGCTGCTT 57.770 42.857 7.79 0.00 0.00 3.91
2204 3375 1.813178 GAAAACCCTAGCTGCTTCCAC 59.187 52.381 7.79 0.00 0.00 4.02
2221 3392 1.200020 CCACCAATCTTTCAACGCCTC 59.800 52.381 0.00 0.00 0.00 4.70
2226 3397 0.253327 ATCTTTCAACGCCTCCCTCC 59.747 55.000 0.00 0.00 0.00 4.30
2246 3417 1.606668 CTCATCTCAGCTCCTCGTACC 59.393 57.143 0.00 0.00 0.00 3.34
2284 3455 0.322997 ACAGTGAGGAGGGTCTCTCG 60.323 60.000 0.00 0.00 43.34 4.04
2285 3456 0.322997 CAGTGAGGAGGGTCTCTCGT 60.323 60.000 0.00 0.00 43.34 4.18
2297 3477 3.181448 GGGTCTCTCGTCTCTTCCTATCT 60.181 52.174 0.00 0.00 0.00 1.98
2298 3478 4.040706 GGGTCTCTCGTCTCTTCCTATCTA 59.959 50.000 0.00 0.00 0.00 1.98
2299 3479 4.992951 GGTCTCTCGTCTCTTCCTATCTAC 59.007 50.000 0.00 0.00 0.00 2.59
2301 3481 5.924825 GTCTCTCGTCTCTTCCTATCTACTC 59.075 48.000 0.00 0.00 0.00 2.59
2305 3612 4.654724 TCGTCTCTTCCTATCTACTCCTCA 59.345 45.833 0.00 0.00 0.00 3.86
2310 3617 7.977293 GTCTCTTCCTATCTACTCCTCAAAAAC 59.023 40.741 0.00 0.00 0.00 2.43
2312 3619 6.436532 TCTTCCTATCTACTCCTCAAAAACGT 59.563 38.462 0.00 0.00 0.00 3.99
2317 3624 7.701501 CCTATCTACTCCTCAAAAACGTCTTAC 59.298 40.741 0.00 0.00 0.00 2.34
2321 3628 8.579006 TCTACTCCTCAAAAACGTCTTACATTA 58.421 33.333 0.00 0.00 0.00 1.90
2324 3631 7.876068 ACTCCTCAAAAACGTCTTACATTATGA 59.124 33.333 0.00 0.00 0.00 2.15
2328 3635 8.702408 TCAAAAACGTCTTACATTATGAAACG 57.298 30.769 0.00 5.68 0.00 3.60
2332 3639 5.957798 ACGTCTTACATTATGAAACGGAGA 58.042 37.500 0.00 0.00 0.00 3.71
2333 3640 6.392354 ACGTCTTACATTATGAAACGGAGAA 58.608 36.000 0.00 0.00 0.00 2.87
2336 3643 7.180748 GTCTTACATTATGAAACGGAGAAAGC 58.819 38.462 0.00 0.00 0.00 3.51
2339 3646 4.156008 ACATTATGAAACGGAGAAAGCACC 59.844 41.667 0.00 0.00 0.00 5.01
2340 3647 2.568623 ATGAAACGGAGAAAGCACCT 57.431 45.000 0.00 0.00 0.00 4.00
2341 3648 2.341846 TGAAACGGAGAAAGCACCTT 57.658 45.000 0.00 0.00 0.00 3.50
2342 3649 2.218603 TGAAACGGAGAAAGCACCTTC 58.781 47.619 0.00 0.00 0.00 3.46
2343 3650 1.535896 GAAACGGAGAAAGCACCTTCC 59.464 52.381 0.00 0.00 0.00 3.46
2344 3651 0.765510 AACGGAGAAAGCACCTTCCT 59.234 50.000 0.00 0.00 0.00 3.36
2345 3652 1.640917 ACGGAGAAAGCACCTTCCTA 58.359 50.000 0.00 0.00 0.00 2.94
2346 3653 1.975680 ACGGAGAAAGCACCTTCCTAA 59.024 47.619 0.00 0.00 0.00 2.69
2347 3654 2.028020 ACGGAGAAAGCACCTTCCTAAG 60.028 50.000 0.00 0.00 0.00 2.18
2356 3663 2.854522 CCTTCCTAAGGTTGTGGCG 58.145 57.895 0.00 0.00 43.95 5.69
2357 3664 0.676782 CCTTCCTAAGGTTGTGGCGG 60.677 60.000 0.00 0.00 43.95 6.13
2358 3665 0.676782 CTTCCTAAGGTTGTGGCGGG 60.677 60.000 0.00 0.00 0.00 6.13
2359 3666 1.420532 TTCCTAAGGTTGTGGCGGGT 61.421 55.000 0.00 0.00 0.00 5.28
2360 3667 1.376812 CCTAAGGTTGTGGCGGGTC 60.377 63.158 0.00 0.00 0.00 4.46
2361 3668 1.376812 CTAAGGTTGTGGCGGGTCC 60.377 63.158 0.00 0.00 0.00 4.46
2362 3669 2.814913 CTAAGGTTGTGGCGGGTCCC 62.815 65.000 0.00 0.00 0.00 4.46
2370 3677 4.041762 GGCGGGTCCCACATCCAA 62.042 66.667 9.12 0.00 0.00 3.53
2371 3678 2.034999 GCGGGTCCCACATCCAAA 59.965 61.111 9.12 0.00 0.00 3.28
2372 3679 2.046285 GCGGGTCCCACATCCAAAG 61.046 63.158 9.12 0.00 0.00 2.77
2373 3680 1.378514 CGGGTCCCACATCCAAAGG 60.379 63.158 9.12 0.00 0.00 3.11
2374 3681 1.847798 CGGGTCCCACATCCAAAGGA 61.848 60.000 9.12 0.00 35.55 3.36
2375 3682 0.631212 GGGTCCCACATCCAAAGGAT 59.369 55.000 1.78 0.00 44.21 3.24
2376 3683 1.007118 GGGTCCCACATCCAAAGGATT 59.993 52.381 1.78 0.00 39.79 3.01
2377 3684 2.559705 GGGTCCCACATCCAAAGGATTT 60.560 50.000 1.78 0.00 39.79 2.17
2391 3698 5.391312 AAAGGATTTGTGTAGGCATTCAC 57.609 39.130 0.76 0.76 36.60 3.18
2392 3699 3.356290 AGGATTTGTGTAGGCATTCACC 58.644 45.455 5.66 0.00 34.14 4.02
2393 3700 2.427095 GGATTTGTGTAGGCATTCACCC 59.573 50.000 5.66 0.00 34.14 4.61
2397 3704 2.722094 TGTGTAGGCATTCACCCATTC 58.278 47.619 5.66 0.00 34.14 2.67
2424 3731 7.230712 CCACTAGTAGAAAAAGGGTCATTTGTT 59.769 37.037 3.59 0.00 0.00 2.83
2457 3765 1.897802 GGTCTTTAGTCCCGGTTCTGA 59.102 52.381 0.00 0.00 0.00 3.27
2460 3768 4.565028 GGTCTTTAGTCCCGGTTCTGAAAT 60.565 45.833 0.00 0.00 0.00 2.17
2462 3770 4.285003 TCTTTAGTCCCGGTTCTGAAATCA 59.715 41.667 0.00 0.00 0.00 2.57
2535 3846 2.356780 CCGGGACTAAAGGCCGTCT 61.357 63.158 8.21 0.00 0.00 4.18
2569 3880 2.183679 CTGGAGCTCCACCTTTAGTCT 58.816 52.381 32.00 0.00 42.01 3.24
2713 4071 3.377253 AATCACCCATCATCACTGCTT 57.623 42.857 0.00 0.00 0.00 3.91
2714 4072 2.885135 TCACCCATCATCACTGCTTT 57.115 45.000 0.00 0.00 0.00 3.51
2789 4169 1.213182 TCCTCTCACTACTCGCCTGAT 59.787 52.381 0.00 0.00 0.00 2.90
2811 4191 3.005684 TCACGCTTAACTTTCGGGTTCTA 59.994 43.478 0.00 0.00 0.00 2.10
2867 4251 8.918202 TGTTTTCCTGACAATAGTAAGATGTT 57.082 30.769 0.00 0.00 0.00 2.71
2900 4284 1.550976 CCTCGGGAGTTTAGCTTGAGT 59.449 52.381 0.00 0.00 0.00 3.41
3007 4490 9.787435 AATAAGTAGTTTGACCATAGTTTGACA 57.213 29.630 0.00 0.00 0.00 3.58
3014 4497 6.371809 TTGACCATAGTTTGACAACAGTTC 57.628 37.500 0.00 0.00 35.05 3.01
3020 4514 3.541632 AGTTTGACAACAGTTCGACCAT 58.458 40.909 0.00 0.00 35.05 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.401837 ACGGAGGGAGTATTACTCAAACTC 59.598 45.833 22.10 21.91 46.79 3.01
5 6 4.351127 ACGGAGGGAGTATTACTCAAACT 58.649 43.478 22.10 16.72 46.79 2.66
6 7 4.732672 ACGGAGGGAGTATTACTCAAAC 57.267 45.455 22.10 13.06 46.79 2.93
7 8 4.161001 GGAACGGAGGGAGTATTACTCAAA 59.839 45.833 22.10 0.00 46.79 2.69
8 9 3.703052 GGAACGGAGGGAGTATTACTCAA 59.297 47.826 22.10 0.00 46.79 3.02
9 10 3.053095 AGGAACGGAGGGAGTATTACTCA 60.053 47.826 22.10 0.00 46.79 3.41
10 11 3.564264 AGGAACGGAGGGAGTATTACTC 58.436 50.000 14.34 14.34 44.32 2.59
11 12 3.684408 AGGAACGGAGGGAGTATTACT 57.316 47.619 0.00 0.00 0.00 2.24
12 13 5.859205 TTTAGGAACGGAGGGAGTATTAC 57.141 43.478 0.00 0.00 0.00 1.89
13 14 8.731591 AATATTTAGGAACGGAGGGAGTATTA 57.268 34.615 0.00 0.00 0.00 0.98
14 15 7.628501 AATATTTAGGAACGGAGGGAGTATT 57.371 36.000 0.00 0.00 0.00 1.89
15 16 7.954620 ACTAATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
108 109 8.742777 AGTGTCTACTACGGAACAAAATGTATA 58.257 33.333 0.00 0.00 34.74 1.47
110 111 6.985117 AGTGTCTACTACGGAACAAAATGTA 58.015 36.000 0.00 0.00 34.74 2.29
111 112 5.850614 AGTGTCTACTACGGAACAAAATGT 58.149 37.500 0.00 0.00 34.74 2.71
118 119 4.863491 TCAACAAGTGTCTACTACGGAAC 58.137 43.478 0.00 0.00 35.69 3.62
119 120 5.518848 TTCAACAAGTGTCTACTACGGAA 57.481 39.130 0.00 0.00 35.69 4.30
130 132 9.178758 AGTCTTTTTAGAGATTTCAACAAGTGT 57.821 29.630 0.00 0.00 0.00 3.55
152 154 8.101419 ACTCCCTTCGTTTCAAAATATAAGTCT 58.899 33.333 0.00 0.00 0.00 3.24
166 168 7.282450 GGATGAAATATTGTACTCCCTTCGTTT 59.718 37.037 0.00 0.00 0.00 3.60
170 172 5.179555 GCGGATGAAATATTGTACTCCCTTC 59.820 44.000 0.00 0.00 0.00 3.46
171 173 5.063880 GCGGATGAAATATTGTACTCCCTT 58.936 41.667 0.00 0.00 0.00 3.95
199 201 3.339253 AACTACGGCCGGACTATTTTT 57.661 42.857 31.76 7.29 0.00 1.94
200 202 4.470334 TTAACTACGGCCGGACTATTTT 57.530 40.909 31.76 14.06 0.00 1.82
201 203 4.470334 TTTAACTACGGCCGGACTATTT 57.530 40.909 31.76 15.20 0.00 1.40
202 204 4.374399 CATTTAACTACGGCCGGACTATT 58.626 43.478 31.76 15.77 0.00 1.73
203 205 3.801293 GCATTTAACTACGGCCGGACTAT 60.801 47.826 31.76 10.73 0.00 2.12
204 206 2.481795 GCATTTAACTACGGCCGGACTA 60.482 50.000 31.76 12.23 0.00 2.59
205 207 1.741394 GCATTTAACTACGGCCGGACT 60.741 52.381 31.76 11.61 0.00 3.85
206 208 0.654160 GCATTTAACTACGGCCGGAC 59.346 55.000 31.76 0.00 0.00 4.79
207 209 0.538118 AGCATTTAACTACGGCCGGA 59.462 50.000 31.76 22.81 0.00 5.14
208 210 0.935196 GAGCATTTAACTACGGCCGG 59.065 55.000 31.76 15.62 0.00 6.13
209 211 1.935933 AGAGCATTTAACTACGGCCG 58.064 50.000 26.86 26.86 0.00 6.13
210 212 6.402226 GCATATAAGAGCATTTAACTACGGCC 60.402 42.308 0.00 0.00 0.00 6.13
212 214 7.652300 TGCATATAAGAGCATTTAACTACGG 57.348 36.000 0.00 0.00 35.51 4.02
246 248 2.799978 CGATATGCGGACATGCTTACAA 59.200 45.455 0.00 0.00 37.04 2.41
293 295 9.531942 TTTATCTCTATTTAATCACGCGGTTAA 57.468 29.630 12.47 10.13 0.00 2.01
297 299 7.402811 TGTTTATCTCTATTTAATCACGCGG 57.597 36.000 12.47 0.00 0.00 6.46
393 828 3.433615 CGTTTGTGTCCATCTTCTTCCTC 59.566 47.826 0.00 0.00 0.00 3.71
432 1249 5.586643 CGTATCTCCCGATCATGAGAGATTA 59.413 44.000 22.92 11.39 42.09 1.75
497 1360 2.146061 ATGGAGCTCAGCCCCTAGC 61.146 63.158 17.19 0.00 44.25 3.42
690 1608 4.184629 CGTACGTACCAAGTACTAGGACT 58.815 47.826 19.67 0.17 41.51 3.85
700 1618 6.303970 GCACATATACATACGTACGTACCAAG 59.696 42.308 28.99 20.16 33.01 3.61
702 1620 5.238214 TGCACATATACATACGTACGTACCA 59.762 40.000 28.99 17.22 33.01 3.25
703 1621 5.688823 TGCACATATACATACGTACGTACC 58.311 41.667 28.99 8.76 33.01 3.34
812 1730 3.414700 CCTGTGCTGTTCGCGGTC 61.415 66.667 6.13 0.00 43.27 4.79
813 1731 4.988598 CCCTGTGCTGTTCGCGGT 62.989 66.667 6.13 0.00 43.27 5.68
814 1732 2.852495 ATACCCTGTGCTGTTCGCGG 62.852 60.000 6.13 0.00 43.27 6.46
815 1733 0.179121 TATACCCTGTGCTGTTCGCG 60.179 55.000 0.00 0.00 43.27 5.87
816 1734 2.240493 ATATACCCTGTGCTGTTCGC 57.760 50.000 0.00 0.00 39.77 4.70
817 1735 3.679980 GCATATATACCCTGTGCTGTTCG 59.320 47.826 0.00 0.00 33.25 3.95
871 1789 0.449184 CTCGATCGTAGTCGTAGCGC 60.449 60.000 15.94 0.00 42.07 5.92
872 1790 0.851495 ACTCGATCGTAGTCGTAGCG 59.149 55.000 15.94 0.00 42.07 4.26
873 1791 3.027710 CAAACTCGATCGTAGTCGTAGC 58.972 50.000 15.94 0.00 42.07 3.58
874 1792 3.027710 GCAAACTCGATCGTAGTCGTAG 58.972 50.000 15.94 5.58 42.07 3.51
875 1793 2.674852 AGCAAACTCGATCGTAGTCGTA 59.325 45.455 15.94 0.00 42.07 3.43
876 1794 1.467734 AGCAAACTCGATCGTAGTCGT 59.532 47.619 15.94 6.54 42.07 4.34
877 1795 1.840741 CAGCAAACTCGATCGTAGTCG 59.159 52.381 15.94 12.17 42.74 4.18
878 1796 1.584308 GCAGCAAACTCGATCGTAGTC 59.416 52.381 15.94 6.01 0.00 2.59
879 1797 1.630148 GCAGCAAACTCGATCGTAGT 58.370 50.000 15.94 13.90 0.00 2.73
880 1798 0.567968 CGCAGCAAACTCGATCGTAG 59.432 55.000 15.94 13.26 0.00 3.51
881 1799 0.169451 TCGCAGCAAACTCGATCGTA 59.831 50.000 15.94 0.90 0.00 3.43
882 1800 1.080772 TCGCAGCAAACTCGATCGT 60.081 52.632 15.94 0.00 0.00 3.73
883 1801 1.073216 AGTCGCAGCAAACTCGATCG 61.073 55.000 9.36 9.36 34.61 3.69
884 1802 0.368227 CAGTCGCAGCAAACTCGATC 59.632 55.000 0.00 0.00 34.61 3.69
885 1803 1.630244 GCAGTCGCAGCAAACTCGAT 61.630 55.000 0.00 0.00 38.36 3.59
886 1804 2.310233 GCAGTCGCAGCAAACTCGA 61.310 57.895 0.00 0.00 38.36 4.04
936 1854 4.380986 TGGACGCCCAGATGAGAT 57.619 55.556 0.00 0.00 37.58 2.75
994 1912 1.135199 CACGTACGCCTCCATGTTAGT 60.135 52.381 16.72 0.00 0.00 2.24
1460 2561 3.626924 ACGTGGACCACCTGCTCC 61.627 66.667 19.11 0.00 37.04 4.70
1781 2885 8.688747 AACTCTCAAAATTTGAAGAGACATCT 57.311 30.769 26.45 12.04 39.58 2.90
1783 2887 9.784531 TCTAACTCTCAAAATTTGAAGAGACAT 57.215 29.630 26.45 18.70 39.58 3.06
1819 2923 1.410517 ACTGTGTATAGCAGCGCTGAT 59.589 47.619 40.21 36.38 40.10 2.90
1821 2925 2.120232 GTACTGTGTATAGCAGCGCTG 58.880 52.381 32.83 32.83 40.10 5.18
1822 2926 1.268589 CGTACTGTGTATAGCAGCGCT 60.269 52.381 2.64 2.64 43.41 5.92
1823 2927 1.121240 CGTACTGTGTATAGCAGCGC 58.879 55.000 0.00 0.00 37.47 5.92
1825 2929 1.121240 CGCGTACTGTGTATAGCAGC 58.879 55.000 0.00 0.00 37.47 5.25
1826 2930 2.109463 CACGCGTACTGTGTATAGCAG 58.891 52.381 13.44 3.44 39.94 4.24
1827 2931 2.182904 CACGCGTACTGTGTATAGCA 57.817 50.000 13.44 0.00 39.94 3.49
1834 2938 2.362047 CGTCCACACGCGTACTGTG 61.362 63.158 13.44 16.61 39.69 3.66
1835 2939 2.050714 CGTCCACACGCGTACTGT 60.051 61.111 13.44 2.36 39.69 3.55
1836 2940 2.078914 GTCGTCCACACGCGTACTG 61.079 63.158 13.44 10.51 46.28 2.74
1837 2941 1.789078 AAGTCGTCCACACGCGTACT 61.789 55.000 13.44 7.17 46.28 2.73
1838 2942 1.370900 AAGTCGTCCACACGCGTAC 60.371 57.895 13.44 5.45 46.28 3.67
1840 2944 2.657296 CAAGTCGTCCACACGCGT 60.657 61.111 5.58 5.58 46.28 6.01
1841 2945 2.657296 ACAAGTCGTCCACACGCG 60.657 61.111 3.53 3.53 46.28 6.01
1845 2949 1.880796 CGTGCACAAGTCGTCCACA 60.881 57.895 18.64 0.00 0.00 4.17
1846 2950 1.590525 TCGTGCACAAGTCGTCCAC 60.591 57.895 18.64 0.00 0.00 4.02
1847 2951 1.590525 GTCGTGCACAAGTCGTCCA 60.591 57.895 18.64 0.00 0.00 4.02
1848 2952 1.548973 CTGTCGTGCACAAGTCGTCC 61.549 60.000 18.64 0.00 33.31 4.79
1850 2954 2.237751 GCTGTCGTGCACAAGTCGT 61.238 57.895 18.64 0.00 33.31 4.34
1851 2955 2.237066 TGCTGTCGTGCACAAGTCG 61.237 57.895 18.64 1.94 38.12 4.18
1852 2956 3.717899 TGCTGTCGTGCACAAGTC 58.282 55.556 18.64 7.88 38.12 3.01
1858 2962 3.641492 GACATGTGCTGTCGTGCA 58.359 55.556 1.15 0.00 44.58 4.57
1864 2968 1.233019 GACTGCTTGACATGTGCTGT 58.767 50.000 15.85 15.85 42.15 4.40
1865 2969 0.520404 GGACTGCTTGACATGTGCTG 59.480 55.000 1.15 7.55 0.00 4.41
1879 2983 3.332919 GCTGGATAGTATGCATGGACTG 58.667 50.000 10.16 0.00 0.00 3.51
1882 2986 1.970640 ACGCTGGATAGTATGCATGGA 59.029 47.619 10.16 0.00 0.00 3.41
1883 2987 2.462456 ACGCTGGATAGTATGCATGG 57.538 50.000 10.16 3.10 0.00 3.66
1884 2988 6.507023 TGATATACGCTGGATAGTATGCATG 58.493 40.000 10.16 3.96 35.44 4.06
1886 2990 5.450550 GCTGATATACGCTGGATAGTATGCA 60.451 44.000 4.13 4.13 35.44 3.96
1889 2993 4.276183 CCGCTGATATACGCTGGATAGTAT 59.724 45.833 0.00 0.00 37.35 2.12
1890 2994 3.626217 CCGCTGATATACGCTGGATAGTA 59.374 47.826 0.00 0.00 0.00 1.82
1891 2995 2.423892 CCGCTGATATACGCTGGATAGT 59.576 50.000 0.00 0.00 0.00 2.12
1894 2998 0.108615 GCCGCTGATATACGCTGGAT 60.109 55.000 9.27 0.00 0.00 3.41
1895 2999 1.289066 GCCGCTGATATACGCTGGA 59.711 57.895 9.27 0.00 0.00 3.86
1896 3000 1.738099 GGCCGCTGATATACGCTGG 60.738 63.158 0.00 0.00 0.00 4.85
1897 3001 2.088763 CGGCCGCTGATATACGCTG 61.089 63.158 14.67 0.00 0.00 5.18
1898 3002 2.258591 CGGCCGCTGATATACGCT 59.741 61.111 14.67 0.00 0.00 5.07
1899 3003 2.558554 ATCCGGCCGCTGATATACGC 62.559 60.000 22.85 0.00 0.00 4.42
1900 3004 0.108804 AATCCGGCCGCTGATATACG 60.109 55.000 22.85 2.11 0.00 3.06
1902 3006 1.479323 GGTAATCCGGCCGCTGATATA 59.521 52.381 22.85 10.22 0.00 0.86
1903 3007 0.249398 GGTAATCCGGCCGCTGATAT 59.751 55.000 22.85 11.14 0.00 1.63
1904 3008 1.669440 GGTAATCCGGCCGCTGATA 59.331 57.895 22.85 6.86 0.00 2.15
1905 3009 2.426023 GGTAATCCGGCCGCTGAT 59.574 61.111 22.85 15.84 0.00 2.90
1906 3010 3.857038 GGGTAATCCGGCCGCTGA 61.857 66.667 22.85 13.89 33.83 4.26
1907 3011 3.476031 ATGGGTAATCCGGCCGCTG 62.476 63.158 22.85 7.49 38.76 5.18
1909 3013 2.668550 GATGGGTAATCCGGCCGC 60.669 66.667 22.85 5.16 38.76 6.53
1910 3014 2.357034 CGATGGGTAATCCGGCCG 60.357 66.667 21.04 21.04 38.76 6.13
1911 3015 1.301479 GACGATGGGTAATCCGGCC 60.301 63.158 0.00 0.00 38.76 6.13
1912 3016 1.301479 GGACGATGGGTAATCCGGC 60.301 63.158 0.00 0.00 38.76 6.13
1913 3017 1.370064 GGGACGATGGGTAATCCGG 59.630 63.158 0.00 0.00 38.76 5.14
1914 3018 0.249741 GTGGGACGATGGGTAATCCG 60.250 60.000 0.00 0.00 38.76 4.18
1915 3019 1.129058 AGTGGGACGATGGGTAATCC 58.871 55.000 0.00 0.00 30.80 3.01
1918 3022 0.899720 GACAGTGGGACGATGGGTAA 59.100 55.000 0.00 0.00 0.00 2.85
1919 3023 1.317431 CGACAGTGGGACGATGGGTA 61.317 60.000 0.00 0.00 0.00 3.69
1920 3024 2.646175 CGACAGTGGGACGATGGGT 61.646 63.158 0.00 0.00 0.00 4.51
1921 3025 2.184322 CGACAGTGGGACGATGGG 59.816 66.667 0.00 0.00 0.00 4.00
1922 3026 1.446099 CACGACAGTGGGACGATGG 60.446 63.158 12.10 0.75 44.34 3.51
1932 3036 0.035317 ATGGATGTGTGCACGACAGT 59.965 50.000 21.10 12.74 34.28 3.55
1933 3037 0.723414 GATGGATGTGTGCACGACAG 59.277 55.000 21.10 0.00 34.28 3.51
1935 3039 1.014044 ACGATGGATGTGTGCACGAC 61.014 55.000 13.13 11.94 0.00 4.34
1937 3041 0.737367 AGACGATGGATGTGTGCACG 60.737 55.000 13.13 0.00 0.00 5.34
1941 3045 3.983988 GCTGTATAGACGATGGATGTGTG 59.016 47.826 0.00 0.00 0.00 3.82
1942 3046 3.636764 TGCTGTATAGACGATGGATGTGT 59.363 43.478 0.00 0.00 0.00 3.72
1945 3049 4.511617 ACTGCTGTATAGACGATGGATG 57.488 45.455 0.00 0.00 0.00 3.51
1946 3050 5.069119 TGAAACTGCTGTATAGACGATGGAT 59.931 40.000 0.00 0.00 0.00 3.41
1947 3051 4.401202 TGAAACTGCTGTATAGACGATGGA 59.599 41.667 0.00 0.00 0.00 3.41
1948 3052 4.682787 TGAAACTGCTGTATAGACGATGG 58.317 43.478 0.00 0.00 0.00 3.51
1950 3054 6.490381 TCCTATGAAACTGCTGTATAGACGAT 59.510 38.462 11.54 0.00 0.00 3.73
1951 3055 5.826208 TCCTATGAAACTGCTGTATAGACGA 59.174 40.000 11.54 2.22 0.00 4.20
1952 3056 6.073327 TCCTATGAAACTGCTGTATAGACG 57.927 41.667 11.54 0.00 0.00 4.18
1953 3057 7.045126 ACTCCTATGAAACTGCTGTATAGAC 57.955 40.000 11.54 0.00 0.00 2.59
1954 3058 7.778382 TGTACTCCTATGAAACTGCTGTATAGA 59.222 37.037 11.54 1.46 0.00 1.98
1955 3059 7.941919 TGTACTCCTATGAAACTGCTGTATAG 58.058 38.462 0.00 1.20 0.00 1.31
1956 3060 7.470147 GCTGTACTCCTATGAAACTGCTGTATA 60.470 40.741 0.00 0.00 32.89 1.47
1957 3061 6.684111 GCTGTACTCCTATGAAACTGCTGTAT 60.684 42.308 0.00 0.00 32.89 2.29
1958 3062 5.394224 GCTGTACTCCTATGAAACTGCTGTA 60.394 44.000 0.00 0.00 32.89 2.74
1959 3063 4.621747 GCTGTACTCCTATGAAACTGCTGT 60.622 45.833 0.00 0.00 32.89 4.40
1960 3064 3.868077 GCTGTACTCCTATGAAACTGCTG 59.132 47.826 0.00 0.00 32.89 4.41
1961 3065 3.429547 CGCTGTACTCCTATGAAACTGCT 60.430 47.826 0.00 0.00 33.18 4.24
1962 3066 2.860735 CGCTGTACTCCTATGAAACTGC 59.139 50.000 0.00 0.00 32.58 4.40
1963 3067 2.860735 GCGCTGTACTCCTATGAAACTG 59.139 50.000 0.00 0.00 0.00 3.16
1964 3068 2.159085 GGCGCTGTACTCCTATGAAACT 60.159 50.000 7.64 0.00 0.00 2.66
1966 3070 1.202371 CGGCGCTGTACTCCTATGAAA 60.202 52.381 8.45 0.00 0.00 2.69
1967 3071 0.384309 CGGCGCTGTACTCCTATGAA 59.616 55.000 8.45 0.00 0.00 2.57
1968 3072 0.750546 ACGGCGCTGTACTCCTATGA 60.751 55.000 22.96 0.00 0.00 2.15
1970 3074 0.102481 CAACGGCGCTGTACTCCTAT 59.898 55.000 24.63 1.08 0.00 2.57
1972 3076 2.261671 CAACGGCGCTGTACTCCT 59.738 61.111 24.63 2.87 0.00 3.69
1973 3077 2.813908 CCAACGGCGCTGTACTCC 60.814 66.667 24.63 0.00 0.00 3.85
1974 3078 2.048503 ACCAACGGCGCTGTACTC 60.049 61.111 24.63 0.00 0.00 2.59
1975 3079 2.167398 ATCACCAACGGCGCTGTACT 62.167 55.000 24.63 4.69 0.00 2.73
1976 3080 1.296056 AATCACCAACGGCGCTGTAC 61.296 55.000 24.63 0.00 0.00 2.90
1977 3081 0.604243 AAATCACCAACGGCGCTGTA 60.604 50.000 24.63 6.79 0.00 2.74
1979 3083 0.318614 AAAAATCACCAACGGCGCTG 60.319 50.000 16.39 16.39 0.00 5.18
1980 3084 0.039527 GAAAAATCACCAACGGCGCT 60.040 50.000 6.90 0.00 0.00 5.92
1981 3085 0.039527 AGAAAAATCACCAACGGCGC 60.040 50.000 6.90 0.00 0.00 6.53
1982 3086 2.050691 CAAGAAAAATCACCAACGGCG 58.949 47.619 4.80 4.80 0.00 6.46
2047 3158 6.424812 AGCCATTTCATTTCTTTTGCAGTTAC 59.575 34.615 0.00 0.00 0.00 2.50
2078 3189 9.553064 AGCATCTGTGGTTCTTCTATATAAAAG 57.447 33.333 0.00 0.00 30.39 2.27
2084 3195 7.168219 ACAAAAGCATCTGTGGTTCTTCTATA 58.832 34.615 0.00 0.00 44.74 1.31
2085 3196 6.006449 ACAAAAGCATCTGTGGTTCTTCTAT 58.994 36.000 0.00 0.00 44.74 1.98
2086 3197 5.376625 ACAAAAGCATCTGTGGTTCTTCTA 58.623 37.500 0.00 0.00 44.74 2.10
2087 3198 4.210331 ACAAAAGCATCTGTGGTTCTTCT 58.790 39.130 0.00 0.00 44.74 2.85
2088 3199 4.574599 ACAAAAGCATCTGTGGTTCTTC 57.425 40.909 0.00 0.00 44.74 2.87
2089 3200 5.343307 AAACAAAAGCATCTGTGGTTCTT 57.657 34.783 0.00 0.00 44.74 2.52
2095 3206 5.691754 GGAAGGTAAAACAAAAGCATCTGTG 59.308 40.000 0.00 0.00 0.00 3.66
2096 3207 5.598417 AGGAAGGTAAAACAAAAGCATCTGT 59.402 36.000 0.00 0.00 0.00 3.41
2097 3208 6.089249 AGGAAGGTAAAACAAAAGCATCTG 57.911 37.500 0.00 0.00 0.00 2.90
2098 3209 6.731292 AAGGAAGGTAAAACAAAAGCATCT 57.269 33.333 0.00 0.00 0.00 2.90
2100 3211 8.870116 AGATAAAGGAAGGTAAAACAAAAGCAT 58.130 29.630 0.00 0.00 0.00 3.79
2101 3212 8.245195 AGATAAAGGAAGGTAAAACAAAAGCA 57.755 30.769 0.00 0.00 0.00 3.91
2102 3213 8.978539 CAAGATAAAGGAAGGTAAAACAAAAGC 58.021 33.333 0.00 0.00 0.00 3.51
2103 3214 9.476202 CCAAGATAAAGGAAGGTAAAACAAAAG 57.524 33.333 0.00 0.00 0.00 2.27
2119 3232 9.695526 TTTCACATTGATTTGACCAAGATAAAG 57.304 29.630 0.00 0.00 0.00 1.85
2122 3235 8.408043 AGTTTCACATTGATTTGACCAAGATA 57.592 30.769 0.00 0.00 0.00 1.98
2139 3252 7.226918 TGTTCGGTGATTGTATTTAGTTTCACA 59.773 33.333 0.00 0.00 36.16 3.58
2152 3323 1.956297 TTTCGGTGTTCGGTGATTGT 58.044 45.000 0.00 0.00 39.77 2.71
2155 3326 3.267483 CCTATTTTCGGTGTTCGGTGAT 58.733 45.455 0.00 0.00 39.77 3.06
2160 3331 3.995705 TGTTACCCTATTTTCGGTGTTCG 59.004 43.478 0.00 0.00 40.90 3.95
2161 3332 5.702209 TCTTGTTACCCTATTTTCGGTGTTC 59.298 40.000 0.00 0.00 33.36 3.18
2162 3333 5.623169 TCTTGTTACCCTATTTTCGGTGTT 58.377 37.500 0.00 0.00 33.36 3.32
2163 3334 5.231702 TCTTGTTACCCTATTTTCGGTGT 57.768 39.130 0.00 0.00 33.36 4.16
2164 3335 6.563222 TTTCTTGTTACCCTATTTTCGGTG 57.437 37.500 0.00 0.00 33.36 4.94
2165 3336 6.016024 GGTTTTCTTGTTACCCTATTTTCGGT 60.016 38.462 0.00 0.00 36.08 4.69
2166 3337 6.384224 GGTTTTCTTGTTACCCTATTTTCGG 58.616 40.000 0.00 0.00 0.00 4.30
2181 3352 2.489722 GGAAGCAGCTAGGGTTTTCTTG 59.510 50.000 0.00 0.00 0.00 3.02
2200 3371 1.202879 AGGCGTTGAAAGATTGGTGGA 60.203 47.619 0.00 0.00 0.00 4.02
2204 3375 0.811281 GGGAGGCGTTGAAAGATTGG 59.189 55.000 0.00 0.00 0.00 3.16
2221 3392 0.105555 AGGAGCTGAGATGAGGAGGG 60.106 60.000 0.00 0.00 0.00 4.30
2226 3397 1.606668 GGTACGAGGAGCTGAGATGAG 59.393 57.143 0.00 0.00 0.00 2.90
2262 3433 1.974236 AGAGACCCTCCTCACTGTTTG 59.026 52.381 0.00 0.00 35.68 2.93
2263 3434 2.252714 GAGAGACCCTCCTCACTGTTT 58.747 52.381 0.00 0.00 35.87 2.83
2266 3437 0.322997 ACGAGAGACCCTCCTCACTG 60.323 60.000 0.00 0.00 38.71 3.66
2284 3455 7.648039 TTTTGAGGAGTAGATAGGAAGAGAC 57.352 40.000 0.00 0.00 0.00 3.36
2285 3456 7.148052 CGTTTTTGAGGAGTAGATAGGAAGAGA 60.148 40.741 0.00 0.00 0.00 3.10
2287 3458 6.436532 ACGTTTTTGAGGAGTAGATAGGAAGA 59.563 38.462 0.00 0.00 0.00 2.87
2297 3477 9.146984 CATAATGTAAGACGTTTTTGAGGAGTA 57.853 33.333 0.00 0.00 0.00 2.59
2298 3478 7.876068 TCATAATGTAAGACGTTTTTGAGGAGT 59.124 33.333 0.00 0.00 0.00 3.85
2299 3479 8.251750 TCATAATGTAAGACGTTTTTGAGGAG 57.748 34.615 0.00 0.00 0.00 3.69
2301 3481 9.113876 GTTTCATAATGTAAGACGTTTTTGAGG 57.886 33.333 0.00 0.00 0.00 3.86
2305 3612 7.863666 TCCGTTTCATAATGTAAGACGTTTTT 58.136 30.769 0.00 0.00 0.00 1.94
2310 3617 6.880822 TTCTCCGTTTCATAATGTAAGACG 57.119 37.500 0.00 0.00 0.00 4.18
2312 3619 6.876789 TGCTTTCTCCGTTTCATAATGTAAGA 59.123 34.615 0.00 0.00 0.00 2.10
2317 3624 4.396166 AGGTGCTTTCTCCGTTTCATAATG 59.604 41.667 0.00 0.00 0.00 1.90
2321 3628 2.568623 AGGTGCTTTCTCCGTTTCAT 57.431 45.000 0.00 0.00 0.00 2.57
2324 3631 1.143073 AGGAAGGTGCTTTCTCCGTTT 59.857 47.619 0.00 0.00 0.00 3.60
2328 3635 2.992593 CCTTAGGAAGGTGCTTTCTCC 58.007 52.381 0.00 0.00 43.95 3.71
2339 3646 0.676782 CCCGCCACAACCTTAGGAAG 60.677 60.000 4.77 0.00 0.00 3.46
2340 3647 1.377229 CCCGCCACAACCTTAGGAA 59.623 57.895 4.77 0.00 0.00 3.36
2341 3648 1.833787 GACCCGCCACAACCTTAGGA 61.834 60.000 4.77 0.00 0.00 2.94
2342 3649 1.376812 GACCCGCCACAACCTTAGG 60.377 63.158 0.00 0.00 0.00 2.69
2343 3650 1.376812 GGACCCGCCACAACCTTAG 60.377 63.158 0.00 0.00 36.34 2.18
2344 3651 2.751688 GGACCCGCCACAACCTTA 59.248 61.111 0.00 0.00 36.34 2.69
2345 3652 4.280019 GGGACCCGCCACAACCTT 62.280 66.667 0.00 0.00 38.95 3.50
2348 3655 4.572571 TGTGGGACCCGCCACAAC 62.573 66.667 21.61 5.53 42.83 3.32
2351 3658 4.796495 GGATGTGGGACCCGCCAC 62.796 72.222 21.61 14.28 38.95 5.01
2353 3660 3.577334 TTTGGATGTGGGACCCGCC 62.577 63.158 21.61 12.48 32.22 6.13
2354 3661 2.034999 TTTGGATGTGGGACCCGC 59.965 61.111 17.83 17.83 34.12 6.13
2355 3662 1.378514 CCTTTGGATGTGGGACCCG 60.379 63.158 5.91 0.00 0.00 5.28
2356 3663 0.631212 ATCCTTTGGATGTGGGACCC 59.369 55.000 2.45 2.45 41.43 4.46
2357 3664 2.497273 CAAATCCTTTGGATGTGGGACC 59.503 50.000 8.52 0.00 42.22 4.46
2358 3665 3.874392 CAAATCCTTTGGATGTGGGAC 57.126 47.619 8.52 0.00 42.22 4.46
2363 3670 3.763897 GCCTACACAAATCCTTTGGATGT 59.236 43.478 0.00 3.61 42.27 3.06
2364 3671 3.763360 TGCCTACACAAATCCTTTGGATG 59.237 43.478 0.00 0.00 42.27 3.51
2365 3672 4.046286 TGCCTACACAAATCCTTTGGAT 57.954 40.909 4.77 0.00 45.46 3.41
2366 3673 3.517296 TGCCTACACAAATCCTTTGGA 57.483 42.857 4.77 0.00 44.81 3.53
2367 3674 4.220382 TGAATGCCTACACAAATCCTTTGG 59.780 41.667 4.77 0.00 44.81 3.28
2368 3675 5.163513 GTGAATGCCTACACAAATCCTTTG 58.836 41.667 0.00 0.00 45.95 2.77
2369 3676 4.220602 GGTGAATGCCTACACAAATCCTTT 59.779 41.667 0.00 0.00 38.57 3.11
2370 3677 3.763897 GGTGAATGCCTACACAAATCCTT 59.236 43.478 0.00 0.00 38.57 3.36
2371 3678 3.356290 GGTGAATGCCTACACAAATCCT 58.644 45.455 0.00 0.00 38.57 3.24
2372 3679 2.427095 GGGTGAATGCCTACACAAATCC 59.573 50.000 0.00 0.00 38.57 3.01
2373 3680 3.088532 TGGGTGAATGCCTACACAAATC 58.911 45.455 0.00 0.00 38.57 2.17
2374 3681 3.168035 TGGGTGAATGCCTACACAAAT 57.832 42.857 0.00 0.00 38.57 2.32
2375 3682 2.666272 TGGGTGAATGCCTACACAAA 57.334 45.000 0.00 0.00 38.57 2.83
2376 3683 2.897271 ATGGGTGAATGCCTACACAA 57.103 45.000 0.00 0.00 38.57 3.33
2377 3684 2.620367 GGAATGGGTGAATGCCTACACA 60.620 50.000 0.00 0.00 38.57 3.72
2378 3685 2.024414 GGAATGGGTGAATGCCTACAC 58.976 52.381 0.00 0.00 36.44 2.90
2379 3686 1.064017 GGGAATGGGTGAATGCCTACA 60.064 52.381 0.00 0.00 0.00 2.74
2380 3687 1.064017 TGGGAATGGGTGAATGCCTAC 60.064 52.381 0.00 0.00 0.00 3.18
2381 3688 1.064017 GTGGGAATGGGTGAATGCCTA 60.064 52.381 0.00 0.00 0.00 3.93
2382 3689 0.324645 GTGGGAATGGGTGAATGCCT 60.325 55.000 0.00 0.00 0.00 4.75
2383 3690 0.324645 AGTGGGAATGGGTGAATGCC 60.325 55.000 0.00 0.00 0.00 4.40
2384 3691 2.301346 CTAGTGGGAATGGGTGAATGC 58.699 52.381 0.00 0.00 0.00 3.56
2385 3692 3.652057 ACTAGTGGGAATGGGTGAATG 57.348 47.619 0.00 0.00 0.00 2.67
2386 3693 4.631234 TCTACTAGTGGGAATGGGTGAAT 58.369 43.478 5.39 0.00 0.00 2.57
2387 3694 4.069312 TCTACTAGTGGGAATGGGTGAA 57.931 45.455 5.39 0.00 0.00 3.18
2388 3695 3.769189 TCTACTAGTGGGAATGGGTGA 57.231 47.619 5.39 0.00 0.00 4.02
2389 3696 4.837093 TTTCTACTAGTGGGAATGGGTG 57.163 45.455 5.39 0.00 0.00 4.61
2390 3697 5.281037 CCTTTTTCTACTAGTGGGAATGGGT 60.281 44.000 5.39 0.00 0.00 4.51
2391 3698 5.193679 CCTTTTTCTACTAGTGGGAATGGG 58.806 45.833 5.39 5.26 0.00 4.00
2392 3699 5.193679 CCCTTTTTCTACTAGTGGGAATGG 58.806 45.833 5.39 8.93 35.40 3.16
2393 3700 5.816682 ACCCTTTTTCTACTAGTGGGAATG 58.183 41.667 16.89 6.52 37.06 2.67
2397 3704 4.903045 TGACCCTTTTTCTACTAGTGGG 57.097 45.455 5.39 8.16 39.06 4.61
2424 3731 2.617840 AAAGACCCTCTAGAACCGGA 57.382 50.000 9.46 0.00 0.00 5.14
2457 3765 4.635699 AACGACCCTTTAGTCCTGATTT 57.364 40.909 0.00 0.00 32.91 2.17
2460 3768 3.771216 AGTAACGACCCTTTAGTCCTGA 58.229 45.455 0.00 0.00 32.91 3.86
2462 3770 5.337089 GCTTTAGTAACGACCCTTTAGTCCT 60.337 44.000 0.00 0.00 32.91 3.85
2535 3846 4.063967 CCAGACAGCGGCCACGTA 62.064 66.667 2.24 0.00 43.45 3.57
2789 4169 2.137523 GAACCCGAAAGTTAAGCGTGA 58.862 47.619 0.00 0.00 0.00 4.35
2811 4191 1.427753 ACTTGGAAACGAGGGGGAATT 59.572 47.619 0.00 0.00 46.96 2.17
2867 4251 5.083953 ACTCCCGAGGGTTAATAGGATTA 57.916 43.478 8.20 0.00 36.47 1.75
2900 4284 4.689071 ACAGTGAAACGTGTGACTTCATA 58.311 39.130 0.00 0.00 45.86 2.15
3007 4490 4.647611 TGGTCAAATATGGTCGAACTGTT 58.352 39.130 0.33 0.00 0.00 3.16
3014 4497 7.881643 TTTGAATTTTGGTCAAATATGGTCG 57.118 32.000 0.00 0.00 39.46 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.