Multiple sequence alignment - TraesCS7A01G273100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G273100 chr7A 100.000 7343 0 0 1 7343 286991844 286984502 0.000000e+00 13561.0
1 TraesCS7A01G273100 chr7A 89.167 120 11 2 1663 1782 657016062 657015945 1.650000e-31 148.0
2 TraesCS7A01G273100 chr6B 98.092 4193 32 31 3177 7343 534000278 534004448 0.000000e+00 7256.0
3 TraesCS7A01G273100 chr6B 96.903 4101 64 36 3177 7240 401412827 401416901 0.000000e+00 6811.0
4 TraesCS7A01G273100 chr6B 96.830 1798 28 16 1403 3180 401410993 401412781 0.000000e+00 2977.0
5 TraesCS7A01G273100 chr6B 98.753 1283 5 5 1907 3181 533998941 534000220 0.000000e+00 2270.0
6 TraesCS7A01G273100 chr6B 94.583 923 27 10 3177 4085 637175896 637174983 0.000000e+00 1406.0
7 TraesCS7A01G273100 chr6B 93.991 699 8 11 735 1399 533998131 533998829 0.000000e+00 1027.0
8 TraesCS7A01G273100 chr6B 93.866 538 20 11 735 1265 401410236 401410767 0.000000e+00 798.0
9 TraesCS7A01G273100 chr6B 90.794 315 19 8 7029 7343 637161668 637161364 5.300000e-111 412.0
10 TraesCS7A01G273100 chr6B 89.164 323 25 8 7027 7343 401416596 401416914 1.920000e-105 394.0
11 TraesCS7A01G273100 chr6B 90.164 305 4 13 1119 1399 401410659 401410961 2.500000e-99 374.0
12 TraesCS7A01G273100 chr6B 100.000 83 0 0 1403 1485 533998861 533998943 3.550000e-33 154.0
13 TraesCS7A01G273100 chr2A 98.067 4190 27 21 3177 7343 172554502 172550344 0.000000e+00 7239.0
14 TraesCS7A01G273100 chr2A 97.892 2040 14 11 3177 5197 646835812 646833783 0.000000e+00 3502.0
15 TraesCS7A01G273100 chr2A 98.453 1293 13 5 1890 3181 646837155 646835869 0.000000e+00 2270.0
16 TraesCS7A01G273100 chr2A 94.949 693 10 10 735 1402 172557139 172556447 0.000000e+00 1062.0
17 TraesCS7A01G273100 chr2A 98.785 494 4 2 1403 1895 172556418 172555926 0.000000e+00 878.0
18 TraesCS7A01G273100 chr2A 98.174 493 7 2 1403 1895 646837672 646837182 0.000000e+00 859.0
19 TraesCS7A01G273100 chr2A 90.997 311 4 9 1113 1399 646838014 646837704 1.480000e-106 398.0
20 TraesCS7A01G273100 chr4A 99.060 3510 12 7 3177 6667 627589845 627593352 0.000000e+00 6279.0
21 TraesCS7A01G273100 chr4A 99.043 1150 5 4 735 1878 627587562 627588711 0.000000e+00 2058.0
22 TraesCS7A01G273100 chr4A 99.526 633 1 2 6711 7343 627593351 627593981 0.000000e+00 1151.0
23 TraesCS7A01G273100 chr2B 97.690 3463 41 21 3177 6617 91071797 91075242 0.000000e+00 5915.0
24 TraesCS7A01G273100 chr2B 98.050 2205 27 16 5142 7343 91076083 91078274 0.000000e+00 3819.0
25 TraesCS7A01G273100 chr2B 92.340 2376 141 25 3174 5525 335403926 335406284 0.000000e+00 3341.0
26 TraesCS7A01G273100 chr2B 91.760 1602 96 24 5534 7125 335406341 335407916 0.000000e+00 2194.0
27 TraesCS7A01G273100 chr2B 96.685 1297 13 7 1887 3181 91070472 91071740 0.000000e+00 2130.0
28 TraesCS7A01G273100 chr2B 94.236 694 11 12 735 1399 91069231 91069924 0.000000e+00 1033.0
29 TraesCS7A01G273100 chr2B 97.980 495 6 4 1403 1895 91069956 91070448 0.000000e+00 856.0
30 TraesCS7A01G273100 chr7B 94.732 2392 74 18 3177 5538 654101972 654104341 0.000000e+00 3672.0
31 TraesCS7A01G273100 chr7B 92.671 2374 132 24 3177 5525 725143262 725140906 0.000000e+00 3382.0
32 TraesCS7A01G273100 chr7B 92.661 2371 134 23 3177 5525 35217175 35219527 0.000000e+00 3378.0
33 TraesCS7A01G273100 chr7B 96.299 1189 40 3 1993 3181 734762033 734763217 0.000000e+00 1949.0
34 TraesCS7A01G273100 chr7B 92.558 739 53 2 1 737 244134006 244133268 0.000000e+00 1059.0
35 TraesCS7A01G273100 chr7B 89.377 546 41 11 735 1268 710080292 710079752 0.000000e+00 671.0
36 TraesCS7A01G273100 chr7B 92.628 312 15 7 7029 7340 654105735 654106038 6.760000e-120 442.0
37 TraesCS7A01G273100 chr7B 79.075 411 62 19 1425 1826 655573453 655573848 2.030000e-65 261.0
38 TraesCS7A01G273100 chrUn 93.936 2391 99 19 3177 5538 12544007 12541634 0.000000e+00 3570.0
39 TraesCS7A01G273100 chrUn 97.227 1190 28 3 1993 3181 12545249 12544064 0.000000e+00 2010.0
40 TraesCS7A01G273100 chrUn 88.321 548 33 20 735 1265 12546118 12545585 4.840000e-176 628.0
41 TraesCS7A01G273100 chr5B 92.543 2387 123 22 3177 5525 3900087 3897718 0.000000e+00 3371.0
42 TraesCS7A01G273100 chr5B 96.636 1189 35 3 1993 3181 571460166 571458983 0.000000e+00 1969.0
43 TraesCS7A01G273100 chr5B 92.463 544 25 12 735 1268 571460999 571460462 0.000000e+00 763.0
44 TraesCS7A01G273100 chr5B 88.847 529 42 12 735 1251 3902116 3901593 1.040000e-177 634.0
45 TraesCS7A01G273100 chr5A 91.885 1602 93 25 5534 7125 678286709 678288283 0.000000e+00 2204.0
46 TraesCS7A01G273100 chr5A 96.636 1189 36 3 1993 3181 678283068 678284252 0.000000e+00 1971.0
47 TraesCS7A01G273100 chr5A 90.123 81 7 1 1700 1779 10041884 10041964 3.620000e-18 104.0
48 TraesCS7A01G273100 chr1B 91.573 1602 97 26 5534 7125 36520944 36522517 0.000000e+00 2176.0
49 TraesCS7A01G273100 chr1B 96.552 1189 37 3 1993 3181 36517302 36518486 0.000000e+00 1965.0
50 TraesCS7A01G273100 chr1B 92.453 53 4 0 515 567 487661813 487661865 7.900000e-10 76.8
51 TraesCS7A01G273100 chr2D 92.231 1403 62 17 2157 3514 60201898 60200498 0.000000e+00 1943.0
52 TraesCS7A01G273100 chr3D 92.154 1402 64 19 2157 3514 53061452 53060053 0.000000e+00 1938.0
53 TraesCS7A01G273100 chr3D 91.809 1404 66 18 2157 3514 54828469 54827069 0.000000e+00 1910.0
54 TraesCS7A01G273100 chr6D 91.815 1405 62 22 2157 3514 97569232 97567834 0.000000e+00 1908.0
55 TraesCS7A01G273100 chr6D 93.958 331 19 1 3178 3507 25522098 25522428 3.960000e-137 499.0
56 TraesCS7A01G273100 chr7D 92.473 744 43 6 1 737 263887277 263886540 0.000000e+00 1051.0
57 TraesCS7A01G273100 chr3A 86.471 340 39 5 1488 1824 16254337 16254002 4.190000e-97 366.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G273100 chr7A 286984502 286991844 7342 True 13561.000000 13561 100.000000 1 7343 1 chr7A.!!$R1 7342
1 TraesCS7A01G273100 chr6B 533998131 534004448 6317 False 2676.750000 7256 97.709000 735 7343 4 chr6B.!!$F2 6608
2 TraesCS7A01G273100 chr6B 401410236 401416914 6678 False 2270.800000 6811 93.385400 735 7343 5 chr6B.!!$F1 6608
3 TraesCS7A01G273100 chr6B 637174983 637175896 913 True 1406.000000 1406 94.583000 3177 4085 1 chr6B.!!$R2 908
4 TraesCS7A01G273100 chr2A 172550344 172557139 6795 True 3059.666667 7239 97.267000 735 7343 3 chr2A.!!$R1 6608
5 TraesCS7A01G273100 chr2A 646833783 646838014 4231 True 1757.250000 3502 96.379000 1113 5197 4 chr2A.!!$R2 4084
6 TraesCS7A01G273100 chr4A 627587562 627593981 6419 False 3162.666667 6279 99.209667 735 7343 3 chr4A.!!$F1 6608
7 TraesCS7A01G273100 chr2B 335403926 335407916 3990 False 2767.500000 3341 92.050000 3174 7125 2 chr2B.!!$F2 3951
8 TraesCS7A01G273100 chr2B 91069231 91078274 9043 False 2750.600000 5915 96.928200 735 7343 5 chr2B.!!$F1 6608
9 TraesCS7A01G273100 chr7B 725140906 725143262 2356 True 3382.000000 3382 92.671000 3177 5525 1 chr7B.!!$R3 2348
10 TraesCS7A01G273100 chr7B 35217175 35219527 2352 False 3378.000000 3378 92.661000 3177 5525 1 chr7B.!!$F1 2348
11 TraesCS7A01G273100 chr7B 654101972 654106038 4066 False 2057.000000 3672 93.680000 3177 7340 2 chr7B.!!$F4 4163
12 TraesCS7A01G273100 chr7B 734762033 734763217 1184 False 1949.000000 1949 96.299000 1993 3181 1 chr7B.!!$F3 1188
13 TraesCS7A01G273100 chr7B 244133268 244134006 738 True 1059.000000 1059 92.558000 1 737 1 chr7B.!!$R1 736
14 TraesCS7A01G273100 chr7B 710079752 710080292 540 True 671.000000 671 89.377000 735 1268 1 chr7B.!!$R2 533
15 TraesCS7A01G273100 chrUn 12541634 12546118 4484 True 2069.333333 3570 93.161333 735 5538 3 chrUn.!!$R1 4803
16 TraesCS7A01G273100 chr5B 3897718 3902116 4398 True 2002.500000 3371 90.695000 735 5525 2 chr5B.!!$R1 4790
17 TraesCS7A01G273100 chr5B 571458983 571460999 2016 True 1366.000000 1969 94.549500 735 3181 2 chr5B.!!$R2 2446
18 TraesCS7A01G273100 chr5A 678283068 678288283 5215 False 2087.500000 2204 94.260500 1993 7125 2 chr5A.!!$F2 5132
19 TraesCS7A01G273100 chr1B 36517302 36522517 5215 False 2070.500000 2176 94.062500 1993 7125 2 chr1B.!!$F2 5132
20 TraesCS7A01G273100 chr2D 60200498 60201898 1400 True 1943.000000 1943 92.231000 2157 3514 1 chr2D.!!$R1 1357
21 TraesCS7A01G273100 chr3D 53060053 53061452 1399 True 1938.000000 1938 92.154000 2157 3514 1 chr3D.!!$R1 1357
22 TraesCS7A01G273100 chr3D 54827069 54828469 1400 True 1910.000000 1910 91.809000 2157 3514 1 chr3D.!!$R2 1357
23 TraesCS7A01G273100 chr6D 97567834 97569232 1398 True 1908.000000 1908 91.815000 2157 3514 1 chr6D.!!$R1 1357
24 TraesCS7A01G273100 chr7D 263886540 263887277 737 True 1051.000000 1051 92.473000 1 737 1 chr7D.!!$R1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 319 0.035036 TGGCGGATTTGAACGTGGTA 59.965 50.000 0.00 0.0 0.00 3.25 F
2048 2375 0.387367 CACTACTCGTTCTGCTGCGT 60.387 55.000 0.00 0.0 0.00 5.24 F
2898 3249 7.358600 CGGTATGCAATGCAACATTATGAAATC 60.359 37.037 13.45 0.0 43.62 2.17 F
4241 4797 3.517901 ACAAGGATGAAGTCACCGGATTA 59.482 43.478 9.46 0.0 0.00 1.75 F
5714 8675 6.892658 TTGAAGAAGCAAGCAAATAACCTA 57.107 33.333 0.00 0.0 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 2501 1.873591 CACCAGAGTTACCTGCAACAC 59.126 52.381 0.00 0.0 32.97 3.32 R
4241 4797 2.290641 CTCGGTTGCTACTTGTTGCTTT 59.709 45.455 8.43 0.0 0.00 3.51 R
4361 4917 1.526575 CGTCCCAAATGCCAGCTGTT 61.527 55.000 13.81 0.0 0.00 3.16 R
5148 5715 4.462280 CTTACCCCCGCGTGGACC 62.462 72.222 18.79 0.0 37.49 4.46 R
6929 9926 7.856145 AACATGGTTGAAGCAAAATAACAAA 57.144 28.000 0.00 0.0 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.134175 CCACCCATGCAAACGGAATAC 59.866 52.381 0.00 0.00 0.00 1.89
30 31 1.134175 CACCCATGCAAACGGAATACC 59.866 52.381 0.00 0.00 0.00 2.73
72 73 7.239763 TGCCATCCTTAATAAGATACATCGA 57.760 36.000 0.83 0.00 0.00 3.59
84 85 0.942252 TACATCGACCGGAGACATCG 59.058 55.000 9.46 6.79 39.32 3.84
89 90 1.519455 GACCGGAGACATCGCAAGG 60.519 63.158 9.46 0.00 38.47 3.61
105 106 5.000591 TCGCAAGGAGAATGATTTGTACAA 58.999 37.500 3.59 3.59 38.47 2.41
207 208 7.964604 AATACGAGGCTAATTAAATGAGTCC 57.035 36.000 0.00 0.00 0.00 3.85
208 209 4.369182 ACGAGGCTAATTAAATGAGTCCG 58.631 43.478 0.00 0.00 0.00 4.79
209 210 4.098960 ACGAGGCTAATTAAATGAGTCCGA 59.901 41.667 0.00 0.00 0.00 4.55
210 211 4.444720 CGAGGCTAATTAAATGAGTCCGAC 59.555 45.833 0.00 0.00 0.00 4.79
211 212 4.369182 AGGCTAATTAAATGAGTCCGACG 58.631 43.478 0.00 0.00 0.00 5.12
212 213 4.098960 AGGCTAATTAAATGAGTCCGACGA 59.901 41.667 0.00 0.00 0.00 4.20
213 214 4.807304 GGCTAATTAAATGAGTCCGACGAA 59.193 41.667 0.00 0.00 0.00 3.85
214 215 5.465724 GGCTAATTAAATGAGTCCGACGAAT 59.534 40.000 0.00 0.00 0.00 3.34
215 216 6.643770 GGCTAATTAAATGAGTCCGACGAATA 59.356 38.462 0.00 0.00 0.00 1.75
216 217 7.170320 GGCTAATTAAATGAGTCCGACGAATAA 59.830 37.037 0.00 0.00 0.00 1.40
217 218 8.709646 GCTAATTAAATGAGTCCGACGAATAAT 58.290 33.333 0.00 0.00 0.00 1.28
219 220 4.795970 AAATGAGTCCGACGAATAATGC 57.204 40.909 0.00 0.00 0.00 3.56
220 221 3.735237 ATGAGTCCGACGAATAATGCT 57.265 42.857 0.00 0.00 0.00 3.79
221 222 3.079960 TGAGTCCGACGAATAATGCTC 57.920 47.619 0.00 0.00 0.00 4.26
222 223 2.425668 TGAGTCCGACGAATAATGCTCA 59.574 45.455 0.00 0.00 0.00 4.26
223 224 3.068165 TGAGTCCGACGAATAATGCTCAT 59.932 43.478 0.00 0.00 0.00 2.90
224 225 4.277423 TGAGTCCGACGAATAATGCTCATA 59.723 41.667 0.00 0.00 0.00 2.15
225 226 4.547532 AGTCCGACGAATAATGCTCATAC 58.452 43.478 0.00 0.00 0.00 2.39
226 227 4.278669 AGTCCGACGAATAATGCTCATACT 59.721 41.667 0.00 0.00 0.00 2.12
227 228 5.472478 AGTCCGACGAATAATGCTCATACTA 59.528 40.000 0.00 0.00 0.00 1.82
228 229 6.151312 AGTCCGACGAATAATGCTCATACTAT 59.849 38.462 0.00 0.00 0.00 2.12
229 230 7.336176 AGTCCGACGAATAATGCTCATACTATA 59.664 37.037 0.00 0.00 0.00 1.31
230 231 8.129840 GTCCGACGAATAATGCTCATACTATAT 58.870 37.037 0.00 0.00 0.00 0.86
231 232 8.343366 TCCGACGAATAATGCTCATACTATATC 58.657 37.037 0.00 0.00 0.00 1.63
232 233 8.129211 CCGACGAATAATGCTCATACTATATCA 58.871 37.037 0.00 0.00 0.00 2.15
233 234 9.670719 CGACGAATAATGCTCATACTATATCAT 57.329 33.333 0.00 0.00 0.00 2.45
258 259 2.748461 TTTTGTCGGACTTGAAAGCG 57.252 45.000 9.88 0.00 0.00 4.68
259 260 0.941542 TTTGTCGGACTTGAAAGCGG 59.058 50.000 9.88 0.00 0.00 5.52
260 261 0.882927 TTGTCGGACTTGAAAGCGGG 60.883 55.000 9.88 0.00 0.00 6.13
261 262 1.301479 GTCGGACTTGAAAGCGGGT 60.301 57.895 0.00 0.00 0.00 5.28
262 263 0.883370 GTCGGACTTGAAAGCGGGTT 60.883 55.000 0.00 0.00 0.00 4.11
263 264 0.882927 TCGGACTTGAAAGCGGGTTG 60.883 55.000 0.00 0.00 0.00 3.77
264 265 0.882927 CGGACTTGAAAGCGGGTTGA 60.883 55.000 0.00 0.00 0.00 3.18
265 266 1.314730 GGACTTGAAAGCGGGTTGAA 58.685 50.000 0.00 0.00 0.00 2.69
266 267 1.886542 GGACTTGAAAGCGGGTTGAAT 59.113 47.619 0.00 0.00 0.00 2.57
267 268 2.351738 GGACTTGAAAGCGGGTTGAATG 60.352 50.000 0.00 0.00 0.00 2.67
268 269 1.000274 ACTTGAAAGCGGGTTGAATGC 60.000 47.619 0.00 0.00 0.00 3.56
269 270 0.039617 TTGAAAGCGGGTTGAATGCG 60.040 50.000 0.00 0.00 0.00 4.73
270 271 1.154035 GAAAGCGGGTTGAATGCGG 60.154 57.895 0.00 0.00 0.00 5.69
271 272 1.862602 GAAAGCGGGTTGAATGCGGT 61.863 55.000 0.00 0.00 0.00 5.68
272 273 2.141122 AAAGCGGGTTGAATGCGGTG 62.141 55.000 0.00 0.00 0.00 4.94
273 274 4.776647 GCGGGTTGAATGCGGTGC 62.777 66.667 0.00 0.00 0.00 5.01
274 275 3.361158 CGGGTTGAATGCGGTGCA 61.361 61.111 0.00 0.00 44.86 4.57
275 276 2.568090 GGGTTGAATGCGGTGCAG 59.432 61.111 0.00 0.00 43.65 4.41
276 277 1.971167 GGGTTGAATGCGGTGCAGA 60.971 57.895 0.00 0.00 43.65 4.26
277 278 1.315257 GGGTTGAATGCGGTGCAGAT 61.315 55.000 0.00 0.00 43.65 2.90
278 279 1.378531 GGTTGAATGCGGTGCAGATA 58.621 50.000 0.00 0.00 43.65 1.98
279 280 1.949525 GGTTGAATGCGGTGCAGATAT 59.050 47.619 0.00 0.00 43.65 1.63
280 281 3.138304 GGTTGAATGCGGTGCAGATATA 58.862 45.455 0.00 0.00 43.65 0.86
281 282 3.187227 GGTTGAATGCGGTGCAGATATAG 59.813 47.826 0.00 0.00 43.65 1.31
282 283 4.058124 GTTGAATGCGGTGCAGATATAGA 58.942 43.478 0.00 0.00 43.65 1.98
283 284 4.541973 TGAATGCGGTGCAGATATAGAT 57.458 40.909 0.00 0.00 43.65 1.98
284 285 4.898320 TGAATGCGGTGCAGATATAGATT 58.102 39.130 0.00 0.00 43.65 2.40
285 286 4.692155 TGAATGCGGTGCAGATATAGATTG 59.308 41.667 0.00 0.00 43.65 2.67
286 287 3.044235 TGCGGTGCAGATATAGATTGG 57.956 47.619 0.00 0.00 33.32 3.16
287 288 2.368548 TGCGGTGCAGATATAGATTGGT 59.631 45.455 0.00 0.00 33.32 3.67
288 289 3.576550 TGCGGTGCAGATATAGATTGGTA 59.423 43.478 0.00 0.00 33.32 3.25
289 290 4.222810 TGCGGTGCAGATATAGATTGGTAT 59.777 41.667 0.00 0.00 33.32 2.73
290 291 5.420739 TGCGGTGCAGATATAGATTGGTATA 59.579 40.000 0.00 0.00 33.32 1.47
291 292 5.749109 GCGGTGCAGATATAGATTGGTATAC 59.251 44.000 0.00 0.00 0.00 1.47
292 293 6.273825 CGGTGCAGATATAGATTGGTATACC 58.726 44.000 15.50 15.50 0.00 2.73
293 294 6.127451 CGGTGCAGATATAGATTGGTATACCA 60.127 42.308 21.05 21.05 45.94 3.25
310 311 1.462616 CCAGATTGTGGCGGATTTGA 58.537 50.000 0.00 0.00 40.39 2.69
311 312 1.818060 CCAGATTGTGGCGGATTTGAA 59.182 47.619 0.00 0.00 40.39 2.69
312 313 2.415893 CCAGATTGTGGCGGATTTGAAC 60.416 50.000 0.00 0.00 40.39 3.18
313 314 1.468520 AGATTGTGGCGGATTTGAACG 59.531 47.619 0.00 0.00 0.00 3.95
314 315 1.199097 GATTGTGGCGGATTTGAACGT 59.801 47.619 0.00 0.00 0.00 3.99
315 316 0.309302 TTGTGGCGGATTTGAACGTG 59.691 50.000 0.00 0.00 0.00 4.49
316 317 1.209127 GTGGCGGATTTGAACGTGG 59.791 57.895 0.00 0.00 0.00 4.94
317 318 1.228003 TGGCGGATTTGAACGTGGT 60.228 52.632 0.00 0.00 0.00 4.16
318 319 0.035036 TGGCGGATTTGAACGTGGTA 59.965 50.000 0.00 0.00 0.00 3.25
319 320 1.339247 TGGCGGATTTGAACGTGGTAT 60.339 47.619 0.00 0.00 0.00 2.73
320 321 1.063469 GGCGGATTTGAACGTGGTATG 59.937 52.381 0.00 0.00 0.00 2.39
321 322 1.063469 GCGGATTTGAACGTGGTATGG 59.937 52.381 0.00 0.00 0.00 2.74
322 323 2.352388 CGGATTTGAACGTGGTATGGT 58.648 47.619 0.00 0.00 0.00 3.55
323 324 3.523547 CGGATTTGAACGTGGTATGGTA 58.476 45.455 0.00 0.00 0.00 3.25
324 325 3.933955 CGGATTTGAACGTGGTATGGTAA 59.066 43.478 0.00 0.00 0.00 2.85
325 326 4.201744 CGGATTTGAACGTGGTATGGTAAC 60.202 45.833 0.00 0.00 0.00 2.50
337 338 3.358554 TGGTAACAGGCGAGACTCT 57.641 52.632 0.03 0.00 46.17 3.24
338 339 0.888619 TGGTAACAGGCGAGACTCTG 59.111 55.000 0.03 0.00 46.17 3.35
339 340 1.174783 GGTAACAGGCGAGACTCTGA 58.825 55.000 0.03 0.00 35.20 3.27
340 341 1.751924 GGTAACAGGCGAGACTCTGAT 59.248 52.381 0.03 0.00 35.20 2.90
341 342 2.223618 GGTAACAGGCGAGACTCTGATC 60.224 54.545 0.03 0.00 35.20 2.92
342 343 1.550327 AACAGGCGAGACTCTGATCA 58.450 50.000 0.03 0.00 35.20 2.92
343 344 1.102154 ACAGGCGAGACTCTGATCAG 58.898 55.000 17.07 17.07 35.20 2.90
344 345 1.340502 ACAGGCGAGACTCTGATCAGA 60.341 52.381 23.75 23.75 35.20 3.27
345 346 1.747924 CAGGCGAGACTCTGATCAGAA 59.252 52.381 25.09 10.25 36.94 3.02
346 347 2.165234 CAGGCGAGACTCTGATCAGAAA 59.835 50.000 25.09 5.42 36.94 2.52
347 348 2.165437 AGGCGAGACTCTGATCAGAAAC 59.835 50.000 25.09 20.11 36.94 2.78
348 349 2.181205 GCGAGACTCTGATCAGAAACG 58.819 52.381 25.09 24.06 36.94 3.60
349 350 2.159503 GCGAGACTCTGATCAGAAACGA 60.160 50.000 27.88 11.33 36.94 3.85
350 351 3.679725 CGAGACTCTGATCAGAAACGAG 58.320 50.000 25.09 15.69 36.94 4.18
351 352 3.372514 CGAGACTCTGATCAGAAACGAGA 59.627 47.826 25.09 2.73 36.94 4.04
352 353 4.142795 CGAGACTCTGATCAGAAACGAGAA 60.143 45.833 25.09 1.70 36.94 2.87
353 354 5.448496 CGAGACTCTGATCAGAAACGAGAAT 60.448 44.000 25.09 8.23 36.94 2.40
354 355 6.238239 CGAGACTCTGATCAGAAACGAGAATA 60.238 42.308 25.09 0.24 36.94 1.75
355 356 7.519809 CGAGACTCTGATCAGAAACGAGAATAT 60.520 40.741 25.09 5.73 36.94 1.28
356 357 8.684386 AGACTCTGATCAGAAACGAGAATATA 57.316 34.615 25.09 0.00 36.94 0.86
357 358 9.126151 AGACTCTGATCAGAAACGAGAATATAA 57.874 33.333 25.09 0.00 36.94 0.98
358 359 9.176181 GACTCTGATCAGAAACGAGAATATAAC 57.824 37.037 25.09 1.59 36.94 1.89
359 360 8.687242 ACTCTGATCAGAAACGAGAATATAACA 58.313 33.333 25.09 0.00 36.94 2.41
360 361 9.689976 CTCTGATCAGAAACGAGAATATAACAT 57.310 33.333 25.09 0.00 36.94 2.71
365 366 9.710900 ATCAGAAACGAGAATATAACATATGCA 57.289 29.630 1.58 0.00 0.00 3.96
366 367 9.710900 TCAGAAACGAGAATATAACATATGCAT 57.289 29.630 3.79 3.79 0.00 3.96
439 440 9.874205 TTAGTACCTATAAATTTAAGCACACGT 57.126 29.630 1.21 0.00 0.00 4.49
441 442 9.525409 AGTACCTATAAATTTAAGCACACGTAG 57.475 33.333 1.21 0.00 0.00 3.51
442 443 9.520204 GTACCTATAAATTTAAGCACACGTAGA 57.480 33.333 1.21 0.00 0.00 2.59
443 444 8.644318 ACCTATAAATTTAAGCACACGTAGAG 57.356 34.615 1.21 0.00 0.00 2.43
444 445 7.224167 ACCTATAAATTTAAGCACACGTAGAGC 59.776 37.037 1.21 0.00 0.00 4.09
445 446 4.680171 AAATTTAAGCACACGTAGAGCC 57.320 40.909 0.00 0.00 0.00 4.70
446 447 3.611766 ATTTAAGCACACGTAGAGCCT 57.388 42.857 0.00 0.00 0.00 4.58
447 448 3.396260 TTTAAGCACACGTAGAGCCTT 57.604 42.857 0.00 0.00 0.00 4.35
448 449 4.524316 TTTAAGCACACGTAGAGCCTTA 57.476 40.909 0.00 0.00 0.00 2.69
449 450 4.524316 TTAAGCACACGTAGAGCCTTAA 57.476 40.909 0.00 0.00 0.00 1.85
450 451 3.396260 AAGCACACGTAGAGCCTTAAA 57.604 42.857 0.00 0.00 0.00 1.52
451 452 3.396260 AGCACACGTAGAGCCTTAAAA 57.604 42.857 0.00 0.00 0.00 1.52
452 453 3.326747 AGCACACGTAGAGCCTTAAAAG 58.673 45.455 0.00 0.00 0.00 2.27
489 490 8.671384 TCTAAACTAACAACTAACAAGCATGT 57.329 30.769 0.00 0.00 43.14 3.21
490 491 8.770828 TCTAAACTAACAACTAACAAGCATGTC 58.229 33.333 0.00 0.00 39.40 3.06
491 492 7.568199 AAACTAACAACTAACAAGCATGTCT 57.432 32.000 0.00 0.00 39.40 3.41
492 493 6.545504 ACTAACAACTAACAAGCATGTCTG 57.454 37.500 0.00 0.00 39.40 3.51
493 494 6.288294 ACTAACAACTAACAAGCATGTCTGA 58.712 36.000 0.00 0.00 39.40 3.27
494 495 6.936900 ACTAACAACTAACAAGCATGTCTGAT 59.063 34.615 0.00 0.00 39.40 2.90
495 496 8.094548 ACTAACAACTAACAAGCATGTCTGATA 58.905 33.333 0.00 0.00 39.40 2.15
496 497 7.744087 AACAACTAACAAGCATGTCTGATAA 57.256 32.000 0.00 0.00 39.40 1.75
497 498 7.369803 ACAACTAACAAGCATGTCTGATAAG 57.630 36.000 0.00 0.00 39.40 1.73
498 499 7.161404 ACAACTAACAAGCATGTCTGATAAGA 58.839 34.615 0.00 0.00 39.40 2.10
499 500 7.661437 ACAACTAACAAGCATGTCTGATAAGAA 59.339 33.333 0.00 0.00 39.40 2.52
500 501 8.506437 CAACTAACAAGCATGTCTGATAAGAAA 58.494 33.333 0.00 0.00 39.40 2.52
501 502 8.621532 ACTAACAAGCATGTCTGATAAGAAAA 57.378 30.769 0.00 0.00 39.40 2.29
502 503 9.066892 ACTAACAAGCATGTCTGATAAGAAAAA 57.933 29.630 0.00 0.00 39.40 1.94
503 504 9.334693 CTAACAAGCATGTCTGATAAGAAAAAC 57.665 33.333 0.00 0.00 39.40 2.43
504 505 7.275888 ACAAGCATGTCTGATAAGAAAAACA 57.724 32.000 0.00 0.00 33.41 2.83
505 506 7.715657 ACAAGCATGTCTGATAAGAAAAACAA 58.284 30.769 0.00 0.00 33.41 2.83
506 507 7.649306 ACAAGCATGTCTGATAAGAAAAACAAC 59.351 33.333 0.00 0.00 33.41 3.32
507 508 7.275888 AGCATGTCTGATAAGAAAAACAACA 57.724 32.000 0.00 0.00 0.00 3.33
508 509 7.889469 AGCATGTCTGATAAGAAAAACAACAT 58.111 30.769 0.00 0.00 0.00 2.71
509 510 8.362639 AGCATGTCTGATAAGAAAAACAACATT 58.637 29.630 0.00 0.00 0.00 2.71
510 511 8.642020 GCATGTCTGATAAGAAAAACAACATTC 58.358 33.333 0.00 0.00 0.00 2.67
511 512 9.681692 CATGTCTGATAAGAAAAACAACATTCA 57.318 29.630 0.00 0.00 0.00 2.57
512 513 9.683069 ATGTCTGATAAGAAAAACAACATTCAC 57.317 29.630 0.00 0.00 0.00 3.18
513 514 8.681806 TGTCTGATAAGAAAAACAACATTCACA 58.318 29.630 0.00 0.00 0.00 3.58
514 515 9.683069 GTCTGATAAGAAAAACAACATTCACAT 57.317 29.630 0.00 0.00 0.00 3.21
519 520 7.698836 AAGAAAAACAACATTCACATACTGC 57.301 32.000 0.00 0.00 0.00 4.40
520 521 7.042797 AGAAAAACAACATTCACATACTGCT 57.957 32.000 0.00 0.00 0.00 4.24
521 522 8.165239 AGAAAAACAACATTCACATACTGCTA 57.835 30.769 0.00 0.00 0.00 3.49
522 523 8.292448 AGAAAAACAACATTCACATACTGCTAG 58.708 33.333 0.00 0.00 0.00 3.42
523 524 7.510549 AAAACAACATTCACATACTGCTAGT 57.489 32.000 0.00 0.00 0.00 2.57
524 525 7.510549 AAACAACATTCACATACTGCTAGTT 57.489 32.000 0.00 0.00 0.00 2.24
525 526 8.615878 AAACAACATTCACATACTGCTAGTTA 57.384 30.769 0.00 0.00 0.00 2.24
526 527 8.615878 AACAACATTCACATACTGCTAGTTAA 57.384 30.769 0.00 0.00 0.00 2.01
527 528 8.792830 ACAACATTCACATACTGCTAGTTAAT 57.207 30.769 0.00 0.00 0.00 1.40
528 529 9.884636 ACAACATTCACATACTGCTAGTTAATA 57.115 29.630 0.00 0.00 0.00 0.98
584 585 9.559958 CATATTTAAAACATCAGATTATCGGGC 57.440 33.333 0.00 0.00 0.00 6.13
585 586 7.823745 ATTTAAAACATCAGATTATCGGGCT 57.176 32.000 0.00 0.00 0.00 5.19
586 587 8.918202 ATTTAAAACATCAGATTATCGGGCTA 57.082 30.769 0.00 0.00 0.00 3.93
587 588 8.740123 TTTAAAACATCAGATTATCGGGCTAA 57.260 30.769 0.00 0.00 0.00 3.09
588 589 8.740123 TTAAAACATCAGATTATCGGGCTAAA 57.260 30.769 0.00 0.00 0.00 1.85
589 590 7.639113 AAAACATCAGATTATCGGGCTAAAA 57.361 32.000 0.00 0.00 0.00 1.52
590 591 7.823745 AAACATCAGATTATCGGGCTAAAAT 57.176 32.000 0.00 0.00 0.00 1.82
591 592 6.808008 ACATCAGATTATCGGGCTAAAATG 57.192 37.500 0.00 0.00 0.00 2.32
592 593 5.707298 ACATCAGATTATCGGGCTAAAATGG 59.293 40.000 0.00 0.00 0.00 3.16
593 594 5.560722 TCAGATTATCGGGCTAAAATGGA 57.439 39.130 0.00 0.00 0.00 3.41
594 595 6.126863 TCAGATTATCGGGCTAAAATGGAT 57.873 37.500 0.00 0.00 0.00 3.41
595 596 6.542821 TCAGATTATCGGGCTAAAATGGATT 58.457 36.000 0.00 0.00 0.00 3.01
596 597 7.685481 TCAGATTATCGGGCTAAAATGGATTA 58.315 34.615 0.00 0.00 0.00 1.75
597 598 8.328758 TCAGATTATCGGGCTAAAATGGATTAT 58.671 33.333 0.00 0.00 0.00 1.28
598 599 8.616076 CAGATTATCGGGCTAAAATGGATTATC 58.384 37.037 0.00 0.00 0.00 1.75
599 600 8.552296 AGATTATCGGGCTAAAATGGATTATCT 58.448 33.333 0.00 0.00 32.02 1.98
600 601 9.178758 GATTATCGGGCTAAAATGGATTATCTT 57.821 33.333 0.00 0.00 0.00 2.40
602 603 7.923414 ATCGGGCTAAAATGGATTATCTTAC 57.077 36.000 0.00 0.00 0.00 2.34
603 604 6.833041 TCGGGCTAAAATGGATTATCTTACA 58.167 36.000 0.00 0.00 0.00 2.41
604 605 7.458397 TCGGGCTAAAATGGATTATCTTACAT 58.542 34.615 0.00 0.00 0.00 2.29
605 606 8.598916 TCGGGCTAAAATGGATTATCTTACATA 58.401 33.333 0.00 0.00 0.00 2.29
606 607 8.883731 CGGGCTAAAATGGATTATCTTACATAG 58.116 37.037 0.00 0.00 0.00 2.23
607 608 9.740710 GGGCTAAAATGGATTATCTTACATAGT 57.259 33.333 0.00 0.00 0.00 2.12
639 640 9.668497 ATTACTACTCCATTGGTTTCTTCTTAC 57.332 33.333 1.86 0.00 0.00 2.34
640 641 7.317722 ACTACTCCATTGGTTTCTTCTTACT 57.682 36.000 1.86 0.00 0.00 2.24
641 642 7.746703 ACTACTCCATTGGTTTCTTCTTACTT 58.253 34.615 1.86 0.00 0.00 2.24
642 643 7.878644 ACTACTCCATTGGTTTCTTCTTACTTC 59.121 37.037 1.86 0.00 0.00 3.01
643 644 6.601332 ACTCCATTGGTTTCTTCTTACTTCA 58.399 36.000 1.86 0.00 0.00 3.02
644 645 6.486993 ACTCCATTGGTTTCTTCTTACTTCAC 59.513 38.462 1.86 0.00 0.00 3.18
645 646 6.361433 TCCATTGGTTTCTTCTTACTTCACA 58.639 36.000 1.86 0.00 0.00 3.58
646 647 7.004086 TCCATTGGTTTCTTCTTACTTCACAT 58.996 34.615 1.86 0.00 0.00 3.21
647 648 8.160765 TCCATTGGTTTCTTCTTACTTCACATA 58.839 33.333 1.86 0.00 0.00 2.29
648 649 8.960591 CCATTGGTTTCTTCTTACTTCACATAT 58.039 33.333 0.00 0.00 0.00 1.78
652 653 9.162764 TGGTTTCTTCTTACTTCACATATTAGC 57.837 33.333 0.00 0.00 0.00 3.09
653 654 9.384764 GGTTTCTTCTTACTTCACATATTAGCT 57.615 33.333 0.00 0.00 0.00 3.32
657 658 9.944376 TCTTCTTACTTCACATATTAGCTTTGT 57.056 29.630 0.00 0.00 0.00 2.83
660 661 9.502091 TCTTACTTCACATATTAGCTTTGTTGT 57.498 29.630 0.00 0.00 0.00 3.32
664 665 9.284968 ACTTCACATATTAGCTTTGTTGTAAGT 57.715 29.630 0.00 1.22 0.00 2.24
665 666 9.760660 CTTCACATATTAGCTTTGTTGTAAGTC 57.239 33.333 0.00 0.00 0.00 3.01
666 667 8.840833 TCACATATTAGCTTTGTTGTAAGTCA 57.159 30.769 0.00 0.00 0.00 3.41
667 668 9.278978 TCACATATTAGCTTTGTTGTAAGTCAA 57.721 29.630 0.00 0.00 0.00 3.18
668 669 9.891828 CACATATTAGCTTTGTTGTAAGTCAAA 57.108 29.630 0.00 0.00 37.81 2.69
669 670 9.893305 ACATATTAGCTTTGTTGTAAGTCAAAC 57.107 29.630 0.00 0.00 37.81 2.93
673 674 6.759497 AGCTTTGTTGTAAGTCAAACTTCT 57.241 33.333 0.00 0.00 39.51 2.85
674 675 7.859325 AGCTTTGTTGTAAGTCAAACTTCTA 57.141 32.000 0.00 0.00 39.51 2.10
675 676 8.451908 AGCTTTGTTGTAAGTCAAACTTCTAT 57.548 30.769 0.00 0.00 39.51 1.98
676 677 8.345565 AGCTTTGTTGTAAGTCAAACTTCTATG 58.654 33.333 0.00 0.00 39.51 2.23
677 678 8.342634 GCTTTGTTGTAAGTCAAACTTCTATGA 58.657 33.333 0.00 0.00 39.51 2.15
680 681 8.958119 TGTTGTAAGTCAAACTTCTATGAAGT 57.042 30.769 7.09 7.09 39.51 3.01
681 682 9.042008 TGTTGTAAGTCAAACTTCTATGAAGTC 57.958 33.333 12.53 2.05 39.51 3.01
682 683 9.262358 GTTGTAAGTCAAACTTCTATGAAGTCT 57.738 33.333 12.53 4.08 39.51 3.24
683 684 8.818141 TGTAAGTCAAACTTCTATGAAGTCTG 57.182 34.615 12.53 9.81 39.51 3.51
684 685 8.638873 TGTAAGTCAAACTTCTATGAAGTCTGA 58.361 33.333 11.12 11.12 39.51 3.27
685 686 7.954788 AAGTCAAACTTCTATGAAGTCTGAC 57.045 36.000 26.52 26.52 44.43 3.51
686 687 6.459923 AGTCAAACTTCTATGAAGTCTGACC 58.540 40.000 28.44 17.86 44.91 4.02
687 688 6.042093 AGTCAAACTTCTATGAAGTCTGACCA 59.958 38.462 28.44 6.48 44.91 4.02
688 689 6.706270 GTCAAACTTCTATGAAGTCTGACCAA 59.294 38.462 24.81 3.38 40.52 3.67
689 690 7.226720 GTCAAACTTCTATGAAGTCTGACCAAA 59.773 37.037 24.81 3.09 40.52 3.28
690 691 7.939039 TCAAACTTCTATGAAGTCTGACCAAAT 59.061 33.333 11.12 0.00 0.00 2.32
691 692 8.571336 CAAACTTCTATGAAGTCTGACCAAATT 58.429 33.333 12.53 0.00 0.00 1.82
692 693 9.793259 AAACTTCTATGAAGTCTGACCAAATTA 57.207 29.630 12.53 0.00 0.00 1.40
693 694 9.965902 AACTTCTATGAAGTCTGACCAAATTAT 57.034 29.630 12.53 0.00 0.00 1.28
1903 2194 4.650734 TGGCACAATCTACAACATTCTGA 58.349 39.130 0.00 0.00 31.92 3.27
1904 2195 5.255687 TGGCACAATCTACAACATTCTGAT 58.744 37.500 0.00 0.00 31.92 2.90
1905 2196 5.124297 TGGCACAATCTACAACATTCTGATG 59.876 40.000 0.00 0.00 35.49 3.07
2048 2375 0.387367 CACTACTCGTTCTGCTGCGT 60.387 55.000 0.00 0.00 0.00 5.24
2898 3249 7.358600 CGGTATGCAATGCAACATTATGAAATC 60.359 37.037 13.45 0.00 43.62 2.17
4241 4797 3.517901 ACAAGGATGAAGTCACCGGATTA 59.482 43.478 9.46 0.00 0.00 1.75
5714 8675 6.892658 TTGAAGAAGCAAGCAAATAACCTA 57.107 33.333 0.00 0.00 0.00 3.08
6929 9926 6.472016 TCAAGGCTTTTTCCTTTTTCAAACT 58.528 32.000 0.00 0.00 43.62 2.66
7105 10112 7.446001 TTGAAAAAGCTTCAACCATGTTTTT 57.554 28.000 0.00 0.00 33.90 1.94
7107 10114 6.093357 TGAAAAAGCTTCAACCATGTTTTTCC 59.907 34.615 17.15 6.64 40.62 3.13
7111 10118 5.495640 AGCTTCAACCATGTTTTTCCAAAA 58.504 33.333 0.00 0.00 0.00 2.44
7112 10119 6.121590 AGCTTCAACCATGTTTTTCCAAAAT 58.878 32.000 0.00 0.00 0.00 1.82
7113 10120 6.260714 AGCTTCAACCATGTTTTTCCAAAATC 59.739 34.615 0.00 0.00 0.00 2.17
7114 10121 6.260714 GCTTCAACCATGTTTTTCCAAAATCT 59.739 34.615 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 2.266376 CTTGCGATGTCTCCGGTCGA 62.266 60.000 14.86 3.94 37.55 4.20
72 73 1.949847 CTCCTTGCGATGTCTCCGGT 61.950 60.000 0.00 0.00 0.00 5.28
84 85 7.945033 TTTTTGTACAAATCATTCTCCTTGC 57.055 32.000 21.17 0.00 0.00 4.01
132 133 8.861033 ATGTGTTTGAAACATGCATATGTATC 57.139 30.769 14.40 0.00 46.54 2.24
189 190 4.098960 TCGTCGGACTCATTTAATTAGCCT 59.901 41.667 6.57 0.00 0.00 4.58
190 191 4.365723 TCGTCGGACTCATTTAATTAGCC 58.634 43.478 6.57 0.00 0.00 3.93
191 192 5.961395 TTCGTCGGACTCATTTAATTAGC 57.039 39.130 6.57 0.00 0.00 3.09
193 194 8.492748 GCATTATTCGTCGGACTCATTTAATTA 58.507 33.333 6.57 0.00 0.00 1.40
194 195 7.226720 AGCATTATTCGTCGGACTCATTTAATT 59.773 33.333 6.57 0.00 0.00 1.40
195 196 6.706270 AGCATTATTCGTCGGACTCATTTAAT 59.294 34.615 6.57 0.92 0.00 1.40
196 197 6.046593 AGCATTATTCGTCGGACTCATTTAA 58.953 36.000 6.57 0.00 0.00 1.52
197 198 5.597806 AGCATTATTCGTCGGACTCATTTA 58.402 37.500 6.57 0.00 0.00 1.40
198 199 4.442706 AGCATTATTCGTCGGACTCATTT 58.557 39.130 6.57 0.00 0.00 2.32
199 200 4.051922 GAGCATTATTCGTCGGACTCATT 58.948 43.478 6.57 0.00 0.00 2.57
200 201 3.068165 TGAGCATTATTCGTCGGACTCAT 59.932 43.478 6.57 0.72 0.00 2.90
201 202 2.425668 TGAGCATTATTCGTCGGACTCA 59.574 45.455 6.57 0.00 0.00 3.41
202 203 3.079960 TGAGCATTATTCGTCGGACTC 57.920 47.619 6.57 0.00 0.00 3.36
203 204 3.735237 ATGAGCATTATTCGTCGGACT 57.265 42.857 6.57 0.00 0.00 3.85
204 205 4.547532 AGTATGAGCATTATTCGTCGGAC 58.452 43.478 0.00 0.00 0.00 4.79
205 206 4.848562 AGTATGAGCATTATTCGTCGGA 57.151 40.909 0.00 0.00 0.00 4.55
206 207 8.129211 TGATATAGTATGAGCATTATTCGTCGG 58.871 37.037 0.00 0.00 0.00 4.79
207 208 9.670719 ATGATATAGTATGAGCATTATTCGTCG 57.329 33.333 0.00 0.00 0.00 5.12
238 239 2.223386 CCGCTTTCAAGTCCGACAAAAA 60.223 45.455 0.40 0.00 0.00 1.94
239 240 1.332375 CCGCTTTCAAGTCCGACAAAA 59.668 47.619 0.40 0.00 0.00 2.44
240 241 0.941542 CCGCTTTCAAGTCCGACAAA 59.058 50.000 0.40 0.00 0.00 2.83
241 242 0.882927 CCCGCTTTCAAGTCCGACAA 60.883 55.000 0.40 0.00 0.00 3.18
242 243 1.301401 CCCGCTTTCAAGTCCGACA 60.301 57.895 0.40 0.00 0.00 4.35
243 244 0.883370 AACCCGCTTTCAAGTCCGAC 60.883 55.000 0.00 0.00 0.00 4.79
244 245 0.882927 CAACCCGCTTTCAAGTCCGA 60.883 55.000 0.00 0.00 0.00 4.55
245 246 0.882927 TCAACCCGCTTTCAAGTCCG 60.883 55.000 0.00 0.00 0.00 4.79
246 247 1.314730 TTCAACCCGCTTTCAAGTCC 58.685 50.000 0.00 0.00 0.00 3.85
247 248 2.922335 GCATTCAACCCGCTTTCAAGTC 60.922 50.000 0.00 0.00 0.00 3.01
248 249 1.000274 GCATTCAACCCGCTTTCAAGT 60.000 47.619 0.00 0.00 0.00 3.16
249 250 1.701704 GCATTCAACCCGCTTTCAAG 58.298 50.000 0.00 0.00 0.00 3.02
250 251 0.039617 CGCATTCAACCCGCTTTCAA 60.040 50.000 0.00 0.00 0.00 2.69
251 252 1.578926 CGCATTCAACCCGCTTTCA 59.421 52.632 0.00 0.00 0.00 2.69
252 253 1.154035 CCGCATTCAACCCGCTTTC 60.154 57.895 0.00 0.00 0.00 2.62
253 254 1.901464 ACCGCATTCAACCCGCTTT 60.901 52.632 0.00 0.00 0.00 3.51
254 255 2.282180 ACCGCATTCAACCCGCTT 60.282 55.556 0.00 0.00 0.00 4.68
255 256 3.055719 CACCGCATTCAACCCGCT 61.056 61.111 0.00 0.00 0.00 5.52
256 257 4.776647 GCACCGCATTCAACCCGC 62.777 66.667 0.00 0.00 0.00 6.13
257 258 3.326889 CTGCACCGCATTCAACCCG 62.327 63.158 0.00 0.00 38.13 5.28
258 259 1.315257 ATCTGCACCGCATTCAACCC 61.315 55.000 0.00 0.00 38.13 4.11
259 260 1.378531 TATCTGCACCGCATTCAACC 58.621 50.000 0.00 0.00 38.13 3.77
260 261 4.058124 TCTATATCTGCACCGCATTCAAC 58.942 43.478 0.00 0.00 38.13 3.18
261 262 4.335400 TCTATATCTGCACCGCATTCAA 57.665 40.909 0.00 0.00 38.13 2.69
262 263 4.541973 ATCTATATCTGCACCGCATTCA 57.458 40.909 0.00 0.00 38.13 2.57
263 264 4.093998 CCAATCTATATCTGCACCGCATTC 59.906 45.833 0.00 0.00 38.13 2.67
264 265 4.005650 CCAATCTATATCTGCACCGCATT 58.994 43.478 0.00 0.00 38.13 3.56
265 266 3.008375 ACCAATCTATATCTGCACCGCAT 59.992 43.478 0.00 0.00 38.13 4.73
266 267 2.368548 ACCAATCTATATCTGCACCGCA 59.631 45.455 0.00 0.00 36.92 5.69
267 268 3.045601 ACCAATCTATATCTGCACCGC 57.954 47.619 0.00 0.00 0.00 5.68
268 269 6.127451 TGGTATACCAATCTATATCTGCACCG 60.127 42.308 22.59 0.00 44.35 4.94
269 270 7.124298 TCTGGTATACCAATCTATATCTGCACC 59.876 40.741 24.59 0.00 46.97 5.01
270 271 8.067751 TCTGGTATACCAATCTATATCTGCAC 57.932 38.462 24.59 0.00 46.97 4.57
271 272 8.844865 ATCTGGTATACCAATCTATATCTGCA 57.155 34.615 24.59 0.00 46.97 4.41
272 273 9.539825 CAATCTGGTATACCAATCTATATCTGC 57.460 37.037 24.59 0.00 46.97 4.26
275 276 9.823647 CCACAATCTGGTATACCAATCTATATC 57.176 37.037 24.59 0.00 46.97 1.63
276 277 8.267894 GCCACAATCTGGTATACCAATCTATAT 58.732 37.037 24.59 9.25 46.97 0.86
277 278 7.578763 CGCCACAATCTGGTATACCAATCTATA 60.579 40.741 24.59 7.47 46.97 1.31
278 279 6.476378 GCCACAATCTGGTATACCAATCTAT 58.524 40.000 24.59 13.03 46.97 1.98
279 280 5.510690 CGCCACAATCTGGTATACCAATCTA 60.511 44.000 24.59 11.41 46.97 1.98
280 281 4.718961 GCCACAATCTGGTATACCAATCT 58.281 43.478 24.59 9.96 46.97 2.40
281 282 3.498397 CGCCACAATCTGGTATACCAATC 59.502 47.826 24.59 8.62 46.97 2.67
282 283 3.476552 CGCCACAATCTGGTATACCAAT 58.523 45.455 24.59 17.14 46.97 3.16
283 284 2.420827 CCGCCACAATCTGGTATACCAA 60.421 50.000 24.59 15.77 46.97 3.67
284 285 1.140052 CCGCCACAATCTGGTATACCA 59.860 52.381 23.23 23.23 42.99 3.25
285 286 1.414919 TCCGCCACAATCTGGTATACC 59.585 52.381 15.50 15.50 42.99 2.73
286 287 2.902705 TCCGCCACAATCTGGTATAC 57.097 50.000 0.00 0.00 42.99 1.47
287 288 4.133820 CAAATCCGCCACAATCTGGTATA 58.866 43.478 0.00 0.00 42.99 1.47
288 289 2.951642 CAAATCCGCCACAATCTGGTAT 59.048 45.455 0.00 0.00 42.99 2.73
289 290 2.026729 TCAAATCCGCCACAATCTGGTA 60.027 45.455 0.00 0.00 42.99 3.25
290 291 1.176527 CAAATCCGCCACAATCTGGT 58.823 50.000 0.00 0.00 42.99 4.00
291 292 1.462616 TCAAATCCGCCACAATCTGG 58.537 50.000 0.00 0.00 44.08 3.86
292 293 2.728846 CGTTCAAATCCGCCACAATCTG 60.729 50.000 0.00 0.00 0.00 2.90
293 294 1.468520 CGTTCAAATCCGCCACAATCT 59.531 47.619 0.00 0.00 0.00 2.40
294 295 1.199097 ACGTTCAAATCCGCCACAATC 59.801 47.619 0.00 0.00 0.00 2.67
295 296 1.068610 CACGTTCAAATCCGCCACAAT 60.069 47.619 0.00 0.00 0.00 2.71
296 297 0.309302 CACGTTCAAATCCGCCACAA 59.691 50.000 0.00 0.00 0.00 3.33
297 298 1.511318 CCACGTTCAAATCCGCCACA 61.511 55.000 0.00 0.00 0.00 4.17
298 299 1.209127 CCACGTTCAAATCCGCCAC 59.791 57.895 0.00 0.00 0.00 5.01
299 300 0.035036 TACCACGTTCAAATCCGCCA 59.965 50.000 0.00 0.00 0.00 5.69
300 301 1.063469 CATACCACGTTCAAATCCGCC 59.937 52.381 0.00 0.00 0.00 6.13
301 302 1.063469 CCATACCACGTTCAAATCCGC 59.937 52.381 0.00 0.00 0.00 5.54
302 303 2.352388 ACCATACCACGTTCAAATCCG 58.648 47.619 0.00 0.00 0.00 4.18
303 304 4.696402 TGTTACCATACCACGTTCAAATCC 59.304 41.667 0.00 0.00 0.00 3.01
304 305 5.163794 CCTGTTACCATACCACGTTCAAATC 60.164 44.000 0.00 0.00 0.00 2.17
305 306 4.698304 CCTGTTACCATACCACGTTCAAAT 59.302 41.667 0.00 0.00 0.00 2.32
306 307 4.066490 CCTGTTACCATACCACGTTCAAA 58.934 43.478 0.00 0.00 0.00 2.69
307 308 3.666274 CCTGTTACCATACCACGTTCAA 58.334 45.455 0.00 0.00 0.00 2.69
308 309 2.613474 GCCTGTTACCATACCACGTTCA 60.613 50.000 0.00 0.00 0.00 3.18
309 310 2.004733 GCCTGTTACCATACCACGTTC 58.995 52.381 0.00 0.00 0.00 3.95
310 311 1.673626 CGCCTGTTACCATACCACGTT 60.674 52.381 0.00 0.00 0.00 3.99
311 312 0.108520 CGCCTGTTACCATACCACGT 60.109 55.000 0.00 0.00 0.00 4.49
312 313 0.173935 TCGCCTGTTACCATACCACG 59.826 55.000 0.00 0.00 0.00 4.94
313 314 1.479323 TCTCGCCTGTTACCATACCAC 59.521 52.381 0.00 0.00 0.00 4.16
314 315 1.479323 GTCTCGCCTGTTACCATACCA 59.521 52.381 0.00 0.00 0.00 3.25
315 316 1.755380 AGTCTCGCCTGTTACCATACC 59.245 52.381 0.00 0.00 0.00 2.73
316 317 2.688958 AGAGTCTCGCCTGTTACCATAC 59.311 50.000 0.00 0.00 0.00 2.39
317 318 2.688446 CAGAGTCTCGCCTGTTACCATA 59.312 50.000 0.00 0.00 0.00 2.74
318 319 1.478510 CAGAGTCTCGCCTGTTACCAT 59.521 52.381 0.00 0.00 0.00 3.55
319 320 0.888619 CAGAGTCTCGCCTGTTACCA 59.111 55.000 0.00 0.00 0.00 3.25
320 321 1.174783 TCAGAGTCTCGCCTGTTACC 58.825 55.000 0.00 0.00 0.00 2.85
321 322 2.423892 TGATCAGAGTCTCGCCTGTTAC 59.576 50.000 0.00 0.00 0.00 2.50
322 323 2.685388 CTGATCAGAGTCTCGCCTGTTA 59.315 50.000 18.34 0.00 0.00 2.41
323 324 1.476085 CTGATCAGAGTCTCGCCTGTT 59.524 52.381 18.34 0.00 0.00 3.16
324 325 1.102154 CTGATCAGAGTCTCGCCTGT 58.898 55.000 18.34 0.00 0.00 4.00
325 326 1.387539 TCTGATCAGAGTCTCGCCTG 58.612 55.000 21.67 0.00 32.82 4.85
326 327 2.136298 TTCTGATCAGAGTCTCGCCT 57.864 50.000 23.92 0.00 38.88 5.52
327 328 2.535331 GTTTCTGATCAGAGTCTCGCC 58.465 52.381 23.92 6.14 38.88 5.54
328 329 2.159503 TCGTTTCTGATCAGAGTCTCGC 60.160 50.000 23.92 11.40 38.88 5.03
329 330 3.372514 TCTCGTTTCTGATCAGAGTCTCG 59.627 47.826 23.92 23.05 38.88 4.04
330 331 4.955925 TCTCGTTTCTGATCAGAGTCTC 57.044 45.455 23.92 14.52 38.88 3.36
331 332 5.913137 ATTCTCGTTTCTGATCAGAGTCT 57.087 39.130 23.92 4.34 38.88 3.24
332 333 9.176181 GTTATATTCTCGTTTCTGATCAGAGTC 57.824 37.037 23.92 18.77 38.88 3.36
333 334 8.687242 TGTTATATTCTCGTTTCTGATCAGAGT 58.313 33.333 23.92 2.66 38.88 3.24
334 335 9.689976 ATGTTATATTCTCGTTTCTGATCAGAG 57.310 33.333 23.92 13.90 38.88 3.35
339 340 9.710900 TGCATATGTTATATTCTCGTTTCTGAT 57.289 29.630 4.29 0.00 0.00 2.90
340 341 9.710900 ATGCATATGTTATATTCTCGTTTCTGA 57.289 29.630 0.00 0.00 0.00 3.27
415 416 9.525409 CTACGTGTGCTTAAATTTATAGGTACT 57.475 33.333 0.00 0.00 46.37 2.73
416 417 9.520204 TCTACGTGTGCTTAAATTTATAGGTAC 57.480 33.333 0.00 3.81 0.00 3.34
417 418 9.740239 CTCTACGTGTGCTTAAATTTATAGGTA 57.260 33.333 0.00 0.00 0.00 3.08
418 419 7.224167 GCTCTACGTGTGCTTAAATTTATAGGT 59.776 37.037 0.00 0.00 32.89 3.08
419 420 7.307219 GGCTCTACGTGTGCTTAAATTTATAGG 60.307 40.741 0.00 0.00 35.67 2.57
420 421 7.438459 AGGCTCTACGTGTGCTTAAATTTATAG 59.562 37.037 0.00 1.59 35.67 1.31
421 422 7.270047 AGGCTCTACGTGTGCTTAAATTTATA 58.730 34.615 0.00 0.00 35.67 0.98
422 423 6.113411 AGGCTCTACGTGTGCTTAAATTTAT 58.887 36.000 0.00 0.00 35.67 1.40
423 424 5.484715 AGGCTCTACGTGTGCTTAAATTTA 58.515 37.500 0.00 0.00 35.67 1.40
424 425 4.324267 AGGCTCTACGTGTGCTTAAATTT 58.676 39.130 0.00 0.00 35.67 1.82
425 426 3.939066 AGGCTCTACGTGTGCTTAAATT 58.061 40.909 0.00 0.00 35.67 1.82
426 427 3.611766 AGGCTCTACGTGTGCTTAAAT 57.388 42.857 0.00 0.00 35.67 1.40
427 428 3.396260 AAGGCTCTACGTGTGCTTAAA 57.604 42.857 0.00 0.00 35.67 1.52
428 429 4.524316 TTAAGGCTCTACGTGTGCTTAA 57.476 40.909 0.00 4.57 35.67 1.85
429 430 4.524316 TTTAAGGCTCTACGTGTGCTTA 57.476 40.909 0.00 0.00 35.67 3.09
430 431 3.396260 TTTAAGGCTCTACGTGTGCTT 57.604 42.857 0.00 0.00 35.67 3.91
431 432 3.326747 CTTTTAAGGCTCTACGTGTGCT 58.673 45.455 0.00 0.00 35.67 4.40
432 433 2.415512 CCTTTTAAGGCTCTACGTGTGC 59.584 50.000 0.00 0.00 39.76 4.57
433 434 3.678548 GTCCTTTTAAGGCTCTACGTGTG 59.321 47.826 0.00 0.00 46.06 3.82
434 435 3.306571 GGTCCTTTTAAGGCTCTACGTGT 60.307 47.826 0.00 0.00 46.06 4.49
435 436 3.259902 GGTCCTTTTAAGGCTCTACGTG 58.740 50.000 0.00 0.00 46.06 4.49
436 437 2.901839 TGGTCCTTTTAAGGCTCTACGT 59.098 45.455 3.56 0.00 46.06 3.57
437 438 3.604875 TGGTCCTTTTAAGGCTCTACG 57.395 47.619 3.56 0.00 46.06 3.51
438 439 6.835819 ATTTTGGTCCTTTTAAGGCTCTAC 57.164 37.500 3.56 0.00 46.06 2.59
439 440 9.185680 GATTATTTTGGTCCTTTTAAGGCTCTA 57.814 33.333 3.56 0.00 46.06 2.43
440 441 7.895962 AGATTATTTTGGTCCTTTTAAGGCTCT 59.104 33.333 3.56 0.00 46.06 4.09
441 442 8.067751 AGATTATTTTGGTCCTTTTAAGGCTC 57.932 34.615 3.56 0.31 46.06 4.70
442 443 9.541884 TTAGATTATTTTGGTCCTTTTAAGGCT 57.458 29.630 3.56 0.00 46.06 4.58
463 464 9.284968 ACATGCTTGTTAGTTGTTAGTTTAGAT 57.715 29.630 0.00 0.00 29.55 1.98
464 465 8.671384 ACATGCTTGTTAGTTGTTAGTTTAGA 57.329 30.769 0.00 0.00 29.55 2.10
465 466 8.774586 AGACATGCTTGTTAGTTGTTAGTTTAG 58.225 33.333 6.70 0.00 35.79 1.85
466 467 8.556194 CAGACATGCTTGTTAGTTGTTAGTTTA 58.444 33.333 6.70 0.00 35.79 2.01
467 468 7.282224 TCAGACATGCTTGTTAGTTGTTAGTTT 59.718 33.333 6.70 0.00 35.79 2.66
468 469 6.765989 TCAGACATGCTTGTTAGTTGTTAGTT 59.234 34.615 6.70 0.00 35.79 2.24
469 470 6.288294 TCAGACATGCTTGTTAGTTGTTAGT 58.712 36.000 6.70 0.00 35.79 2.24
470 471 6.785488 TCAGACATGCTTGTTAGTTGTTAG 57.215 37.500 6.70 0.00 35.79 2.34
471 472 8.840833 TTATCAGACATGCTTGTTAGTTGTTA 57.159 30.769 6.70 1.91 35.79 2.41
472 473 7.661437 TCTTATCAGACATGCTTGTTAGTTGTT 59.339 33.333 6.70 2.69 35.79 2.83
473 474 7.161404 TCTTATCAGACATGCTTGTTAGTTGT 58.839 34.615 6.70 0.00 35.79 3.32
474 475 7.601073 TCTTATCAGACATGCTTGTTAGTTG 57.399 36.000 6.70 4.39 35.79 3.16
475 476 8.621532 TTTCTTATCAGACATGCTTGTTAGTT 57.378 30.769 6.70 1.45 35.79 2.24
476 477 8.621532 TTTTCTTATCAGACATGCTTGTTAGT 57.378 30.769 6.70 0.00 35.79 2.24
477 478 9.334693 GTTTTTCTTATCAGACATGCTTGTTAG 57.665 33.333 6.70 3.21 35.79 2.34
478 479 8.845227 TGTTTTTCTTATCAGACATGCTTGTTA 58.155 29.630 6.70 0.00 35.79 2.41
479 480 7.715657 TGTTTTTCTTATCAGACATGCTTGTT 58.284 30.769 6.70 0.00 35.79 2.83
480 481 7.275888 TGTTTTTCTTATCAGACATGCTTGT 57.724 32.000 4.68 4.68 39.32 3.16
481 482 7.648908 TGTTGTTTTTCTTATCAGACATGCTTG 59.351 33.333 0.00 0.00 0.00 4.01
482 483 7.715657 TGTTGTTTTTCTTATCAGACATGCTT 58.284 30.769 0.00 0.00 0.00 3.91
483 484 7.275888 TGTTGTTTTTCTTATCAGACATGCT 57.724 32.000 0.00 0.00 0.00 3.79
484 485 8.524870 AATGTTGTTTTTCTTATCAGACATGC 57.475 30.769 0.00 0.00 0.00 4.06
485 486 9.681692 TGAATGTTGTTTTTCTTATCAGACATG 57.318 29.630 0.00 0.00 0.00 3.21
486 487 9.683069 GTGAATGTTGTTTTTCTTATCAGACAT 57.317 29.630 0.00 0.00 0.00 3.06
487 488 8.681806 TGTGAATGTTGTTTTTCTTATCAGACA 58.318 29.630 0.00 0.00 0.00 3.41
488 489 9.683069 ATGTGAATGTTGTTTTTCTTATCAGAC 57.317 29.630 0.00 0.00 0.00 3.51
493 494 9.410556 GCAGTATGTGAATGTTGTTTTTCTTAT 57.589 29.630 0.00 0.00 39.31 1.73
494 495 8.629158 AGCAGTATGTGAATGTTGTTTTTCTTA 58.371 29.630 0.00 0.00 39.31 2.10
495 496 7.491682 AGCAGTATGTGAATGTTGTTTTTCTT 58.508 30.769 0.00 0.00 39.31 2.52
496 497 7.042797 AGCAGTATGTGAATGTTGTTTTTCT 57.957 32.000 0.00 0.00 39.31 2.52
497 498 8.076178 ACTAGCAGTATGTGAATGTTGTTTTTC 58.924 33.333 0.00 0.00 39.31 2.29
498 499 7.940850 ACTAGCAGTATGTGAATGTTGTTTTT 58.059 30.769 0.00 0.00 39.31 1.94
499 500 7.510549 ACTAGCAGTATGTGAATGTTGTTTT 57.489 32.000 0.00 0.00 39.31 2.43
500 501 7.510549 AACTAGCAGTATGTGAATGTTGTTT 57.489 32.000 0.00 0.00 39.31 2.83
501 502 8.615878 TTAACTAGCAGTATGTGAATGTTGTT 57.384 30.769 0.00 0.00 39.31 2.83
502 503 8.792830 ATTAACTAGCAGTATGTGAATGTTGT 57.207 30.769 0.00 0.00 39.31 3.32
558 559 9.559958 GCCCGATAATCTGATGTTTTAAATATG 57.440 33.333 0.00 0.00 0.00 1.78
559 560 9.520515 AGCCCGATAATCTGATGTTTTAAATAT 57.479 29.630 0.00 0.00 0.00 1.28
560 561 8.918202 AGCCCGATAATCTGATGTTTTAAATA 57.082 30.769 0.00 0.00 0.00 1.40
561 562 7.823745 AGCCCGATAATCTGATGTTTTAAAT 57.176 32.000 0.00 0.00 0.00 1.40
562 563 8.740123 TTAGCCCGATAATCTGATGTTTTAAA 57.260 30.769 0.00 0.00 0.00 1.52
563 564 8.740123 TTTAGCCCGATAATCTGATGTTTTAA 57.260 30.769 0.00 0.00 0.00 1.52
564 565 8.740123 TTTTAGCCCGATAATCTGATGTTTTA 57.260 30.769 0.00 0.00 0.00 1.52
565 566 7.639113 TTTTAGCCCGATAATCTGATGTTTT 57.361 32.000 0.00 0.00 0.00 2.43
566 567 7.255590 CCATTTTAGCCCGATAATCTGATGTTT 60.256 37.037 0.00 0.00 0.00 2.83
567 568 6.207417 CCATTTTAGCCCGATAATCTGATGTT 59.793 38.462 0.00 0.00 0.00 2.71
568 569 5.707298 CCATTTTAGCCCGATAATCTGATGT 59.293 40.000 0.00 0.00 0.00 3.06
569 570 5.939883 TCCATTTTAGCCCGATAATCTGATG 59.060 40.000 0.00 0.00 0.00 3.07
570 571 6.126863 TCCATTTTAGCCCGATAATCTGAT 57.873 37.500 0.00 0.00 0.00 2.90
571 572 5.560722 TCCATTTTAGCCCGATAATCTGA 57.439 39.130 0.00 0.00 0.00 3.27
572 573 6.824305 AATCCATTTTAGCCCGATAATCTG 57.176 37.500 0.00 0.00 0.00 2.90
573 574 8.552296 AGATAATCCATTTTAGCCCGATAATCT 58.448 33.333 0.00 0.00 0.00 2.40
574 575 8.738645 AGATAATCCATTTTAGCCCGATAATC 57.261 34.615 0.00 0.00 0.00 1.75
576 577 9.444600 GTAAGATAATCCATTTTAGCCCGATAA 57.555 33.333 0.00 0.00 0.00 1.75
577 578 8.598916 TGTAAGATAATCCATTTTAGCCCGATA 58.401 33.333 0.00 0.00 0.00 2.92
578 579 7.458397 TGTAAGATAATCCATTTTAGCCCGAT 58.542 34.615 0.00 0.00 0.00 4.18
579 580 6.833041 TGTAAGATAATCCATTTTAGCCCGA 58.167 36.000 0.00 0.00 0.00 5.14
580 581 7.687941 ATGTAAGATAATCCATTTTAGCCCG 57.312 36.000 0.00 0.00 0.00 6.13
581 582 9.740710 ACTATGTAAGATAATCCATTTTAGCCC 57.259 33.333 0.00 0.00 0.00 5.19
613 614 9.668497 GTAAGAAGAAACCAATGGAGTAGTAAT 57.332 33.333 6.16 0.00 0.00 1.89
614 615 8.877195 AGTAAGAAGAAACCAATGGAGTAGTAA 58.123 33.333 6.16 0.00 0.00 2.24
615 616 8.431910 AGTAAGAAGAAACCAATGGAGTAGTA 57.568 34.615 6.16 0.00 0.00 1.82
616 617 7.317722 AGTAAGAAGAAACCAATGGAGTAGT 57.682 36.000 6.16 0.00 0.00 2.73
617 618 7.878127 TGAAGTAAGAAGAAACCAATGGAGTAG 59.122 37.037 6.16 0.00 0.00 2.57
618 619 7.660208 GTGAAGTAAGAAGAAACCAATGGAGTA 59.340 37.037 6.16 0.00 0.00 2.59
619 620 6.486993 GTGAAGTAAGAAGAAACCAATGGAGT 59.513 38.462 6.16 0.00 0.00 3.85
620 621 6.486657 TGTGAAGTAAGAAGAAACCAATGGAG 59.513 38.462 6.16 0.00 0.00 3.86
621 622 6.361433 TGTGAAGTAAGAAGAAACCAATGGA 58.639 36.000 6.16 0.00 0.00 3.41
622 623 6.633500 TGTGAAGTAAGAAGAAACCAATGG 57.367 37.500 0.00 0.00 0.00 3.16
626 627 9.162764 GCTAATATGTGAAGTAAGAAGAAACCA 57.837 33.333 0.00 0.00 0.00 3.67
627 628 9.384764 AGCTAATATGTGAAGTAAGAAGAAACC 57.615 33.333 0.00 0.00 0.00 3.27
631 632 9.944376 ACAAAGCTAATATGTGAAGTAAGAAGA 57.056 29.630 0.00 0.00 0.00 2.87
634 635 9.502091 ACAACAAAGCTAATATGTGAAGTAAGA 57.498 29.630 0.00 0.00 0.00 2.10
638 639 9.284968 ACTTACAACAAAGCTAATATGTGAAGT 57.715 29.630 0.00 0.00 0.00 3.01
639 640 9.760660 GACTTACAACAAAGCTAATATGTGAAG 57.239 33.333 0.00 0.00 0.00 3.02
640 641 9.278978 TGACTTACAACAAAGCTAATATGTGAA 57.721 29.630 0.00 0.00 0.00 3.18
641 642 8.840833 TGACTTACAACAAAGCTAATATGTGA 57.159 30.769 0.00 0.00 0.00 3.58
642 643 9.891828 TTTGACTTACAACAAAGCTAATATGTG 57.108 29.630 0.00 0.00 38.29 3.21
643 644 9.893305 GTTTGACTTACAACAAAGCTAATATGT 57.107 29.630 0.00 0.00 38.29 2.29
647 648 8.903820 AGAAGTTTGACTTACAACAAAGCTAAT 58.096 29.630 0.00 0.00 38.80 1.73
648 649 8.276252 AGAAGTTTGACTTACAACAAAGCTAA 57.724 30.769 0.00 0.00 38.80 3.09
649 650 7.859325 AGAAGTTTGACTTACAACAAAGCTA 57.141 32.000 0.00 0.00 38.80 3.32
650 651 6.759497 AGAAGTTTGACTTACAACAAAGCT 57.241 33.333 0.00 0.00 38.80 3.74
651 652 8.342634 TCATAGAAGTTTGACTTACAACAAAGC 58.657 33.333 0.00 0.00 38.80 3.51
654 655 9.391006 ACTTCATAGAAGTTTGACTTACAACAA 57.609 29.630 6.58 0.00 38.80 2.83
655 656 8.958119 ACTTCATAGAAGTTTGACTTACAACA 57.042 30.769 6.58 0.00 38.80 3.33
656 657 9.262358 AGACTTCATAGAAGTTTGACTTACAAC 57.738 33.333 13.07 0.00 38.80 3.32
657 658 9.261180 CAGACTTCATAGAAGTTTGACTTACAA 57.739 33.333 19.72 0.00 38.80 2.41
658 659 8.638873 TCAGACTTCATAGAAGTTTGACTTACA 58.361 33.333 21.82 6.24 38.80 2.41
664 665 6.419484 TGGTCAGACTTCATAGAAGTTTGA 57.581 37.500 21.82 21.82 38.53 2.69
665 666 7.496529 TTTGGTCAGACTTCATAGAAGTTTG 57.503 36.000 18.83 18.83 34.72 2.93
666 667 8.697507 AATTTGGTCAGACTTCATAGAAGTTT 57.302 30.769 13.07 5.59 0.00 2.66
667 668 9.965902 ATAATTTGGTCAGACTTCATAGAAGTT 57.034 29.630 13.07 2.31 0.00 2.66
721 722 9.483916 GGCCACAAACACTTTTATTTAGTATTT 57.516 29.630 0.00 0.00 0.00 1.40
722 723 7.810759 CGGCCACAAACACTTTTATTTAGTATT 59.189 33.333 2.24 0.00 0.00 1.89
723 724 7.309920 CGGCCACAAACACTTTTATTTAGTAT 58.690 34.615 2.24 0.00 0.00 2.12
724 725 6.294065 CCGGCCACAAACACTTTTATTTAGTA 60.294 38.462 2.24 0.00 0.00 1.82
725 726 5.508320 CCGGCCACAAACACTTTTATTTAGT 60.508 40.000 2.24 0.00 0.00 2.24
726 727 4.920927 CCGGCCACAAACACTTTTATTTAG 59.079 41.667 2.24 0.00 0.00 1.85
727 728 4.341520 ACCGGCCACAAACACTTTTATTTA 59.658 37.500 0.00 0.00 0.00 1.40
728 729 3.133183 ACCGGCCACAAACACTTTTATTT 59.867 39.130 0.00 0.00 0.00 1.40
729 730 2.696187 ACCGGCCACAAACACTTTTATT 59.304 40.909 0.00 0.00 0.00 1.40
730 731 2.035321 CACCGGCCACAAACACTTTTAT 59.965 45.455 0.00 0.00 0.00 1.40
731 732 1.405821 CACCGGCCACAAACACTTTTA 59.594 47.619 0.00 0.00 0.00 1.52
732 733 0.174617 CACCGGCCACAAACACTTTT 59.825 50.000 0.00 0.00 0.00 2.27
733 734 1.813192 CACCGGCCACAAACACTTT 59.187 52.632 0.00 0.00 0.00 2.66
1895 2186 7.482169 TTCTAGTGTTCTACCATCAGAATGT 57.518 36.000 0.00 0.00 36.93 2.71
1896 2187 8.954950 ATTTCTAGTGTTCTACCATCAGAATG 57.045 34.615 0.00 0.00 36.93 2.67
1982 2307 3.419943 TGCATATCAGACCAAAGCACAA 58.580 40.909 0.00 0.00 0.00 3.33
1983 2308 3.070476 TGCATATCAGACCAAAGCACA 57.930 42.857 0.00 0.00 0.00 4.57
2048 2375 6.317642 CGTATGAATTCAGGAATGTTGGGTTA 59.682 38.462 14.54 0.00 0.00 2.85
2173 2501 1.873591 CACCAGAGTTACCTGCAACAC 59.126 52.381 0.00 0.00 32.97 3.32
4241 4797 2.290641 CTCGGTTGCTACTTGTTGCTTT 59.709 45.455 8.43 0.00 0.00 3.51
4361 4917 1.526575 CGTCCCAAATGCCAGCTGTT 61.527 55.000 13.81 0.00 0.00 3.16
5148 5715 4.462280 CTTACCCCCGCGTGGACC 62.462 72.222 18.79 0.00 37.49 4.46
5714 8675 4.566426 AAAAAGAGAGCATGAGCCTACT 57.434 40.909 0.00 0.00 43.56 2.57
6929 9926 7.856145 AACATGGTTGAAGCAAAATAACAAA 57.144 28.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.