AutoCloner

Multiple sequence alignment - TraesCS7A01G272900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G272900	chr7A	100.000	9886	0	0	1	9886	286538834	286528949	0.000000e+00	18257.0
1	TraesCS7A01G272900	chr7A	91.071	280	24	1	5124	5403	81779210	81778932	2.610000e-100	377.0
2	TraesCS7A01G272900	chr7A	82.808	349	49	10	9326	9667	126086533	126086877	1.610000e-77	302.0
3	TraesCS7A01G272900	chr7A	93.939	66	4	0	7288	7353	286531469	286531404	6.320000e-17	100.0
4	TraesCS7A01G272900	chr7A	93.939	66	4	0	7366	7431	286531547	286531482	6.320000e-17	100.0
5	TraesCS7A01G272900	chr7A	77.473	182	21	15	323	494	286538341	286538512	3.800000e-14	91.6
6	TraesCS7A01G272900	chr7A	100.000	33	0	0	3420	3452	181041153	181041185	2.980000e-05	62.1
7	TraesCS7A01G272900	chr7D	94.430	2729	102	11	544	3248	263531425	263528723	0.000000e+00	4152.0
8	TraesCS7A01G272900	chr7D	95.904	1831	38	6	6640	8437	263525742	263523916	0.000000e+00	2931.0
9	TraesCS7A01G272900	chr7D	94.447	1909	51	19	3538	5401	178944870	178946768	0.000000e+00	2887.0
10	TraesCS7A01G272900	chr7D	94.879	1035	50	3	5402	6434	263528726	263527693	0.000000e+00	1615.0
11	TraesCS7A01G272900	chr7D	90.071	1269	69	10	8484	9706	263523916	263522659	0.000000e+00	1592.0
12	TraesCS7A01G272900	chr7D	90.641	983	38	9	4475	5403	16185339	16184357	0.000000e+00	1256.0
13	TraesCS7A01G272900	chr7D	95.618	251	9	2	5156	5404	78862433	78862183	1.550000e-107	401.0
14	TraesCS7A01G272900	chr7D	95.604	182	6	1	3246	3427	413241920	413242099	3.490000e-74	291.0
15	TraesCS7A01G272900	chr7D	93.478	184	10	1	3244	3427	592977187	592977006	1.270000e-68	272.0
16	TraesCS7A01G272900	chr7D	95.294	170	7	1	6485	6654	263527427	263527259	1.640000e-67	268.0
17	TraesCS7A01G272900	chr7D	92.793	111	8	0	9776	9886	263522623	263522513	2.860000e-35	161.0
18	TraesCS7A01G272900	chr7D	97.778	90	2	0	3450	3539	264976445	264976534	1.330000e-33	156.0
19	TraesCS7A01G272900	chr7D	91.509	106	9	0	7248	7353	263525032	263524927	8.000000e-31	147.0
20	TraesCS7A01G272900	chr7D	93.939	66	4	0	7366	7431	263525096	263525031	6.320000e-17	100.0
21	TraesCS7A01G272900	chr7D	81.197	117	16	5	541	653	54587240	54587354	1.370000e-13	89.8
22	TraesCS7A01G272900	chr7D	97.500	40	1	0	8102	8141	39134528	39134567	1.780000e-07	69.4
23	TraesCS7A01G272900	chr7D	92.308	39	3	0	193	231	263656916	263656878	1.000000e-03	56.5
24	TraesCS7A01G272900	chr6A	94.652	1926	43	30	3538	5404	286337349	286335425	0.000000e+00	2931.0
25	TraesCS7A01G272900	chr6A	82.724	1806	184	54	3565	5291	18669650	18671406	0.000000e+00	1489.0
26	TraesCS7A01G272900	chr6A	84.483	754	73	13	4689	5404	562485943	562486690	0.000000e+00	704.0
27	TraesCS7A01G272900	chr6A	96.186	236	9	0	5168	5403	170015885	170015650	4.330000e-103	387.0
28	TraesCS7A01G272900	chr6A	95.161	186	7	1	3244	3427	286337532	286337347	9.710000e-75	292.0
29	TraesCS7A01G272900	chr6A	89.764	127	11	2	3450	3576	222571333	222571209	2.860000e-35	161.0
30	TraesCS7A01G272900	chr6D	94.256	1915	66	13	3540	5414	24573312	24575222	0.000000e+00	2887.0
31	TraesCS7A01G272900	chr6D	93.760	1923	59	17	3540	5405	223934628	223932710	0.000000e+00	2830.0
32	TraesCS7A01G272900	chr6D	93.002	1929	66	33	3540	5404	420558720	420556797	0.000000e+00	2750.0
33	TraesCS7A01G272900	chr6D	92.600	1919	73	17	3540	5401	10674671	10676577	0.000000e+00	2693.0
34	TraesCS7A01G272900	chr6D	94.296	1613	35	15	3853	5409	455519834	455521445	0.000000e+00	2416.0
35	TraesCS7A01G272900	chr6D	89.861	1509	77	26	3859	5309	424699697	424701187	0.000000e+00	1869.0
36	TraesCS7A01G272900	chr6D	87.869	1187	83	21	4279	5407	345292339	345293522	0.000000e+00	1338.0
37	TraesCS7A01G272900	chr6D	83.610	842	86	34	4611	5404	300295794	300294957	0.000000e+00	743.0
38	TraesCS7A01G272900	chr6D	82.462	593	60	20	9321	9885	433733272	433732696	6.950000e-131	479.0
39	TraesCS7A01G272900	chr6D	90.690	290	17	6	5124	5404	386157108	386156820	2.610000e-100	377.0
40	TraesCS7A01G272900	chr6D	91.489	235	17	2	5170	5404	444085287	444085056	4.460000e-83	320.0
41	TraesCS7A01G272900	chr6D	96.000	100	4	0	3450	3549	221864944	221864845	7.940000e-36	163.0
42	TraesCS7A01G272900	chr6D	86.842	76	9	1	8105	8179	6833154	6833079	6.360000e-12	84.2
43	TraesCS7A01G272900	chr6D	85.185	81	6	4	8101	8176	211444024	211443945	2.960000e-10	78.7
44	TraesCS7A01G272900	chr6D	82.432	74	10	3	8106	8176	430388497	430388424	2.980000e-05	62.1
45	TraesCS7A01G272900	chr1D	94.292	1892	67	23	3538	5401	259771323	259769445	0.000000e+00	2857.0
46	TraesCS7A01G272900	chr1D	94.118	1921	42	23	3538	5401	432634822	432632916	0.000000e+00	2856.0
47	TraesCS7A01G272900	chr1D	92.488	1917	76	25	3540	5401	425564911	425566814	0.000000e+00	2680.0
48	TraesCS7A01G272900	chr1D	90.640	1720	82	32	3739	5404	377183415	377185109	0.000000e+00	2211.0
49	TraesCS7A01G272900	chr1D	93.625	251	13	3	5156	5404	29804015	29803766	1.210000e-98	372.0
50	TraesCS7A01G272900	chr1D	94.000	200	11	1	1	200	237648417	237648615	1.610000e-77	302.0
51	TraesCS7A01G272900	chr1D	96.970	99	2	1	3450	3547	175821622	175821720	2.210000e-36	165.0
52	TraesCS7A01G272900	chr1D	93.651	63	3	1	9705	9767	463165656	463165595	1.060000e-14	93.5
53	TraesCS7A01G272900	chr1D	87.342	79	7	3	8096	8171	189883086	189883164	4.920000e-13	87.9
54	TraesCS7A01G272900	chr1D	86.111	72	10	0	8105	8176	303340607	303340678	2.960000e-10	78.7
55	TraesCS7A01G272900	chr1D	97.368	38	1	0	8103	8140	233793710	233793747	2.300000e-06	65.8
56	TraesCS7A01G272900	chr1D	100.000	33	0	0	3420	3452	122637540	122637572	2.980000e-05	62.1
57	TraesCS7A01G272900	chr3D	93.496	1922	64	26	3540	5401	365185179	365187099	0.000000e+00	2800.0
58	TraesCS7A01G272900	chr3D	89.559	680	52	15	4742	5403	504979577	504978899	0.000000e+00	845.0
59	TraesCS7A01G272900	chr3D	94.937	237	11	1	5168	5404	458317458	458317223	4.360000e-98	370.0
60	TraesCS7A01G272900	chr3D	95.000	200	8	2	1	200	96009988	96010185	7.450000e-81	313.0
61	TraesCS7A01G272900	chr3D	95.000	200	9	1	1	200	452245471	452245669	7.450000e-81	313.0
62	TraesCS7A01G272900	chr3D	92.857	182	13	0	3246	3427	458318532	458318351	2.120000e-66	265.0
63	TraesCS7A01G272900	chr3D	92.174	115	8	1	3450	3564	30939337	30939450	2.860000e-35	161.0
64	TraesCS7A01G272900	chr3D	92.035	113	7	2	3450	3562	555180645	555180755	3.700000e-34	158.0
65	TraesCS7A01G272900	chr3D	84.404	109	9	6	582	687	129261708	129261605	6.320000e-17	100.0
66	TraesCS7A01G272900	chr4D	93.440	1875	77	24	3576	5404	23233243	23235117	0.000000e+00	2739.0
67	TraesCS7A01G272900	chr4D	91.571	1922	78	34	3540	5401	28418338	28420235	0.000000e+00	2575.0
68	TraesCS7A01G272900	chr4D	81.879	596	63	18	9321	9886	4050243	4050823	2.520000e-125	460.0
69	TraesCS7A01G272900	chr4D	92.500	240	13	4	5165	5403	125094866	125095101	1.230000e-88	339.0
70	TraesCS7A01G272900	chr4D	87.719	285	27	8	5124	5403	66507636	66507917	9.580000e-85	326.0
71	TraesCS7A01G272900	chr4D	94.000	200	11	1	1	200	171971092	171971290	1.610000e-77	302.0
72	TraesCS7A01G272900	chr4D	94.086	186	9	1	3244	3427	125086415	125086600	2.100000e-71	281.0
73	TraesCS7A01G272900	chr4D	95.968	124	5	0	5278	5401	483041924	483042047	1.680000e-47	202.0
74	TraesCS7A01G272900	chr4D	91.870	123	6	1	3424	3542	493248736	493248614	1.710000e-37	169.0
75	TraesCS7A01G272900	chr4D	81.290	155	20	7	580	733	343550110	343549964	6.270000e-22	117.0
76	TraesCS7A01G272900	chr4D	87.342	79	6	3	8102	8177	75264074	75264151	4.920000e-13	87.9
77	TraesCS7A01G272900	chr4D	76.433	157	22	12	548	702	399198076	399197933	4.950000e-08	71.3
78	TraesCS7A01G272900	chr4D	95.238	42	1	1	8102	8142	44749353	44749394	2.300000e-06	65.8
79	TraesCS7A01G272900	chr4D	100.000	35	0	0	8104	8138	365838506	365838472	2.300000e-06	65.8
80	TraesCS7A01G272900	chr4D	100.000	34	0	0	8105	8138	395380198	395380165	8.290000e-06	63.9
81	TraesCS7A01G272900	chr4D	97.222	36	1	0	8102	8137	132962130	132962165	2.980000e-05	62.1
82	TraesCS7A01G272900	chr4D	97.222	36	1	0	8104	8139	450220368	450220333	2.980000e-05	62.1
83	TraesCS7A01G272900	chr4D	92.857	42	2	1	8102	8142	66303737	66303778	1.070000e-04	60.2
84	TraesCS7A01G272900	chr4D	76.271	118	22	6	5289	5404	25383976	25383863	3.860000e-04	58.4
85	TraesCS7A01G272900	chr4D	82.609	69	8	3	5336	5403	437514688	437514753	3.860000e-04	58.4
86	TraesCS7A01G272900	chr5D	96.998	1599	30	6	3538	5120	41228403	41226807	0.000000e+00	2671.0
87	TraesCS7A01G272900	chr5D	93.163	1609	68	15	3540	5120	543595265	543593671	0.000000e+00	2324.0
88	TraesCS7A01G272900	chr5D	86.938	467	42	11	4628	5076	556240155	556240620	3.190000e-139	507.0
89	TraesCS7A01G272900	chr5D	94.000	200	11	1	1	200	514561812	514562010	1.610000e-77	302.0
90	TraesCS7A01G272900	chr5D	95.266	169	6	1	3246	3412	559069190	559069358	5.890000e-67	267.0
91	TraesCS7A01G272900	chr5D	94.220	173	8	2	3241	3412	551893396	551893567	7.610000e-66	263.0
92	TraesCS7A01G272900	chr5D	92.432	185	11	2	3244	3427	489751443	489751261	2.740000e-65	261.0
93	TraesCS7A01G272900	chr5D	96.000	100	4	0	3450	3549	61715307	61715208	7.940000e-36	163.0
94	TraesCS7A01G272900	chr5D	94.231	104	6	0	3450	3553	322385022	322384919	1.030000e-34	159.0
95	TraesCS7A01G272900	chr1A	92.061	1902	101	26	3546	5403	10952512	10950617	0.000000e+00	2630.0
96	TraesCS7A01G272900	chr1A	95.238	63	3	0	9705	9767	555076909	555076847	6.320000e-17	100.0
97	TraesCS7A01G272900	chr1A	83.133	83	10	4	8105	8185	167803940	167803860	1.380000e-08	73.1
98	TraesCS7A01G272900	chr4B	91.801	1927	90	31	3540	5404	52652288	52650368	0.000000e+00	2621.0
99	TraesCS7A01G272900	chr4B	94.286	105	4	2	3450	3554	327862056	327861954	1.030000e-34	159.0
100	TraesCS7A01G272900	chr4B	93.458	107	6	1	3450	3556	71600699	71600804	3.700000e-34	158.0
101	TraesCS7A01G272900	chr5B	95.483	1594	54	10	3538	5120	326613737	326615323	0.000000e+00	2529.0
102	TraesCS7A01G272900	chr5B	93.137	204	11	2	1	204	646734700	646734900	7.510000e-76	296.0
103	TraesCS7A01G272900	chr5B	83.544	79	8	4	8098	8176	6399700	6399773	1.780000e-07	69.4
104	TraesCS7A01G272900	chr5B	100.000	34	0	0	3419	3452	469966115	469966082	8.290000e-06	63.9
105	TraesCS7A01G272900	chr5B	92.500	40	2	1	3413	3452	291840583	291840621	1.000000e-03	56.5
106	TraesCS7A01G272900	chr2D	94.524	1607	53	16	3540	5120	603694114	603695711	0.000000e+00	2447.0
107	TraesCS7A01G272900	chr2D	93.571	1602	57	15	3540	5120	637388496	637386920	0.000000e+00	2346.0
108	TraesCS7A01G272900	chr2D	93.019	1590	57	18	3870	5406	567652527	567650939	0.000000e+00	2272.0
109	TraesCS7A01G272900	chr2D	88.716	1923	130	35	3540	5401	48168882	48166986	0.000000e+00	2268.0
110	TraesCS7A01G272900	chr2D	94.821	251	10	3	5156	5404	469999022	469999271	1.200000e-103	388.0
111	TraesCS7A01G272900	chr2D	94.118	255	11	2	5151	5401	563968073	563968327	1.560000e-102	385.0
112	TraesCS7A01G272900	chr2D	96.791	187	6	0	1	187	243684514	243684700	7.450000e-81	313.0
113	TraesCS7A01G272900	chr2D	85.333	75	7	3	8105	8177	76643011	76642939	3.830000e-09	75.0
114	TraesCS7A01G272900	chr2D	83.099	71	9	2	8104	8171	23043922	23043992	2.980000e-05	62.1
115	TraesCS7A01G272900	chr3B	90.572	1888	103	33	3581	5401	764728035	764726156	0.000000e+00	2431.0
116	TraesCS7A01G272900	chr3B	94.286	105	4	2	3450	3552	814015991	814015887	1.030000e-34	159.0
117	TraesCS7A01G272900	chr3B	89.344	122	10	2	3450	3568	590952430	590952551	6.190000e-32	150.0
118	TraesCS7A01G272900	chr7B	88.995	1890	128	32	6490	8312	243271992	243270116	0.000000e+00	2265.0
119	TraesCS7A01G272900	chr7B	95.882	1190	26	6	811	2000	243276966	243275800	0.000000e+00	1905.0
120	TraesCS7A01G272900	chr7B	89.872	1254	108	8	2002	3243	243274481	243273235	0.000000e+00	1594.0
121	TraesCS7A01G272900	chr7B	91.727	967	55	4	8515	9459	243269673	243268710	0.000000e+00	1319.0
122	TraesCS7A01G272900	chr7B	90.947	729	62	4	5708	6434	243272988	243272262	0.000000e+00	977.0
123	TraesCS7A01G272900	chr7B	80.782	588	68	25	9326	9886	637561822	637562391	1.540000e-112	418.0
124	TraesCS7A01G272900	chr7B	88.929	280	22	5	9461	9731	243267858	243267579	4.420000e-88	337.0
125	TraesCS7A01G272900	chr7B	89.600	250	25	1	5406	5654	243273230	243272981	5.760000e-82	316.0
126	TraesCS7A01G272900	chr7B	95.187	187	9	0	1	187	306616643	306616829	7.510000e-76	296.0
127	TraesCS7A01G272900	chr7B	96.933	163	4	1	8349	8511	243270110	243269949	1.270000e-68	272.0
128	TraesCS7A01G272900	chr7B	91.892	111	6	1	9776	9886	243267570	243267463	1.720000e-32	152.0
129	TraesCS7A01G272900	chr7B	89.623	106	11	0	7248	7353	243271116	243271011	1.730000e-27	135.0
130	TraesCS7A01G272900	chr7B	93.651	63	4	0	9705	9767	23001736	23001798	2.940000e-15	95.3
131	TraesCS7A01G272900	chr7B	81.600	125	14	8	544	667	588258477	588258593	2.940000e-15	95.3
132	TraesCS7A01G272900	chr7B	80.000	125	16	8	544	667	588245964	588246080	6.360000e-12	84.2
133	TraesCS7A01G272900	chr7B	92.308	52	3	1	544	595	20723165	20723215	1.380000e-08	73.1
134	TraesCS7A01G272900	chr7B	93.182	44	3	0	9270	9313	243269002	243268959	2.300000e-06	65.8
135	TraesCS7A01G272900	chr7B	91.304	46	4	0	5584	5629	243273096	243273051	8.290000e-06	63.9
136	TraesCS7A01G272900	chr7B	94.737	38	1	1	3416	3452	85140044	85140081	3.860000e-04	58.4
137	TraesCS7A01G272900	chr2B	81.565	575	73	22	9321	9882	384320431	384319877	2.530000e-120	444.0
138	TraesCS7A01G272900	chr2B	94.000	200	11	1	1	200	415063177	415063375	1.610000e-77	302.0
139	TraesCS7A01G272900	chr2B	79.459	185	24	12	596	778	245995703	245995875	1.740000e-22	119.0
140	TraesCS7A01G272900	chr4A	94.821	251	11	2	5156	5404	471170082	471170332	3.350000e-104	390.0
141	TraesCS7A01G272900	chr4A	78.682	258	23	20	9462	9708	611060846	611061082	1.040000e-29	143.0
142	TraesCS7A01G272900	chr4A	79.710	138	17	9	560	692	731876463	731876594	1.370000e-13	89.8
143	TraesCS7A01G272900	chr1B	94.652	187	9	1	3241	3427	458701596	458701411	1.260000e-73	289.0
144	TraesCS7A01G272900	chr1B	97.500	40	1	0	8100	8139	57019526	57019487	1.780000e-07	69.4
145	TraesCS7A01G272900	chr1B	100.000	33	0	0	3420	3452	276910740	276910772	2.980000e-05	62.1
146	TraesCS7A01G272900	chr1B	92.500	40	2	1	3414	3452	540714469	540714508	1.000000e-03	56.5
147	TraesCS7A01G272900	chr1B	90.476	42	2	2	3411	3452	504083764	504083725	5.000000e-03	54.7
148	TraesCS7A01G272900	chrUn	81.224	245	29	13	9441	9679	354021018	354021251	2.190000e-41	182.0
149	TraesCS7A01G272900	chrUn	82.051	117	16	5	552	668	458539975	458539864	2.940000e-15	95.3
150	TraesCS7A01G272900	chrUn	89.362	47	5	0	8093	8139	286166388	286166434	1.070000e-04	60.2
151	TraesCS7A01G272900	chrUn	97.143	35	1	0	8105	8139	389704416	389704382	1.070000e-04	60.2
152	TraesCS7A01G272900	chrUn	97.059	34	1	0	8105	8138	346286326	346286293	3.860000e-04	58.4
153	TraesCS7A01G272900	chr6B	88.608	79	3	5	8103	8176	378287142	378287065	3.800000e-14	91.6
154	TraesCS7A01G272900	chr6B	83.810	105	6	4	9705	9804	450879215	450879117	1.370000e-13	89.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G272900	chr7A	286528949	286538834	9885	True	18257.000	18257	100.000000	1	9886	1	chr7A.!!$R2	9885
1	TraesCS7A01G272900	chr7D	178944870	178946768	1898	False	2887.000	2887	94.447000	3538	5401	1	chr7D.!!$F3	1863
2	TraesCS7A01G272900	chr7D	263522513	263531425	8912	True	1370.750	4152	93.602375	544	9886	8	chr7D.!!$R5	9342
3	TraesCS7A01G272900	chr7D	16184357	16185339	982	True	1256.000	1256	90.641000	4475	5403	1	chr7D.!!$R1	928
4	TraesCS7A01G272900	chr6A	286335425	286337532	2107	True	1611.500	2931	94.906500	3244	5404	2	chr6A.!!$R3	2160
5	TraesCS7A01G272900	chr6A	18669650	18671406	1756	False	1489.000	1489	82.724000	3565	5291	1	chr6A.!!$F1	1726
6	TraesCS7A01G272900	chr6A	562485943	562486690	747	False	704.000	704	84.483000	4689	5404	1	chr6A.!!$F2	715
7	TraesCS7A01G272900	chr6D	24573312	24575222	1910	False	2887.000	2887	94.256000	3540	5414	1	chr6D.!!$F2	1874
8	TraesCS7A01G272900	chr6D	223932710	223934628	1918	True	2830.000	2830	93.760000	3540	5405	1	chr6D.!!$R4	1865
9	TraesCS7A01G272900	chr6D	420556797	420558720	1923	True	2750.000	2750	93.002000	3540	5404	1	chr6D.!!$R7	1864
10	TraesCS7A01G272900	chr6D	10674671	10676577	1906	False	2693.000	2693	92.600000	3540	5401	1	chr6D.!!$F1	1861
11	TraesCS7A01G272900	chr6D	455519834	455521445	1611	False	2416.000	2416	94.296000	3853	5409	1	chr6D.!!$F5	1556
12	TraesCS7A01G272900	chr6D	424699697	424701187	1490	False	1869.000	1869	89.861000	3859	5309	1	chr6D.!!$F4	1450
13	TraesCS7A01G272900	chr6D	345292339	345293522	1183	False	1338.000	1338	87.869000	4279	5407	1	chr6D.!!$F3	1128
14	TraesCS7A01G272900	chr6D	300294957	300295794	837	True	743.000	743	83.610000	4611	5404	1	chr6D.!!$R5	793
15	TraesCS7A01G272900	chr6D	433732696	433733272	576	True	479.000	479	82.462000	9321	9885	1	chr6D.!!$R9	564
16	TraesCS7A01G272900	chr1D	259769445	259771323	1878	True	2857.000	2857	94.292000	3538	5401	1	chr1D.!!$R2	1863
17	TraesCS7A01G272900	chr1D	432632916	432634822	1906	True	2856.000	2856	94.118000	3538	5401	1	chr1D.!!$R3	1863
18	TraesCS7A01G272900	chr1D	425564911	425566814	1903	False	2680.000	2680	92.488000	3540	5401	1	chr1D.!!$F8	1861
19	TraesCS7A01G272900	chr1D	377183415	377185109	1694	False	2211.000	2211	90.640000	3739	5404	1	chr1D.!!$F7	1665
20	TraesCS7A01G272900	chr3D	365185179	365187099	1920	False	2800.000	2800	93.496000	3540	5401	1	chr3D.!!$F3	1861
21	TraesCS7A01G272900	chr3D	504978899	504979577	678	True	845.000	845	89.559000	4742	5403	1	chr3D.!!$R2	661
22	TraesCS7A01G272900	chr3D	458317223	458318532	1309	True	317.500	370	93.897000	3246	5404	2	chr3D.!!$R3	2158
23	TraesCS7A01G272900	chr4D	23233243	23235117	1874	False	2739.000	2739	93.440000	3576	5404	1	chr4D.!!$F2	1828
24	TraesCS7A01G272900	chr4D	28418338	28420235	1897	False	2575.000	2575	91.571000	3540	5401	1	chr4D.!!$F3	1861
25	TraesCS7A01G272900	chr4D	4050243	4050823	580	False	460.000	460	81.879000	9321	9886	1	chr4D.!!$F1	565
26	TraesCS7A01G272900	chr5D	41226807	41228403	1596	True	2671.000	2671	96.998000	3538	5120	1	chr5D.!!$R1	1582
27	TraesCS7A01G272900	chr5D	543593671	543595265	1594	True	2324.000	2324	93.163000	3540	5120	1	chr5D.!!$R5	1580
28	TraesCS7A01G272900	chr1A	10950617	10952512	1895	True	2630.000	2630	92.061000	3546	5403	1	chr1A.!!$R1	1857
29	TraesCS7A01G272900	chr4B	52650368	52652288	1920	True	2621.000	2621	91.801000	3540	5404	1	chr4B.!!$R1	1864
30	TraesCS7A01G272900	chr5B	326613737	326615323	1586	False	2529.000	2529	95.483000	3538	5120	1	chr5B.!!$F3	1582
31	TraesCS7A01G272900	chr2D	603694114	603695711	1597	False	2447.000	2447	94.524000	3540	5120	1	chr2D.!!$F5	1580
32	TraesCS7A01G272900	chr2D	637386920	637388496	1576	True	2346.000	2346	93.571000	3540	5120	1	chr2D.!!$R4	1580
33	TraesCS7A01G272900	chr2D	567650939	567652527	1588	True	2272.000	2272	93.019000	3870	5406	1	chr2D.!!$R3	1536
34	TraesCS7A01G272900	chr2D	48166986	48168882	1896	True	2268.000	2268	88.716000	3540	5401	1	chr2D.!!$R1	1861
35	TraesCS7A01G272900	chr3B	764726156	764728035	1879	True	2431.000	2431	90.572000	3581	5401	1	chr3B.!!$R1	1820
36	TraesCS7A01G272900	chr7B	243267463	243276966	9503	True	783.475	2265	91.573833	811	9886	12	chr7B.!!$R1	9075
37	TraesCS7A01G272900	chr7B	637561822	637562391	569	False	418.000	418	80.782000	9326	9886	1	chr7B.!!$F7	560
38	TraesCS7A01G272900	chr2B	384319877	384320431	554	True	444.000	444	81.565000	9321	9882	1	chr2B.!!$R1	561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
327	328	0.040425	ACATGGTGTTTTTCGCTCGC	60.040	50.0	0.00	0.00	0.00	5.03	F
338	339	0.179187	TTCGCTCGCTTTCTCTCTCG	60.179	55.0	0.00	0.00	0.00	4.04	F
374	375	0.243636	CCCGGAACATTTTCAGCACC	59.756	55.0	0.73	0.00	32.80	5.01	F
458	459	0.243636	GGGTGCTGAAAATGTTCCGG	59.756	55.0	0.00	0.00	32.28	5.14	F
517	518	0.243636	GGGTGCTGAAAATGTTCCGG	59.756	55.0	0.00	0.00	32.28	5.14	F
518	519	0.388520	GGTGCTGAAAATGTTCCGGC	60.389	55.0	0.00	0.00	34.25	6.13	F
1473	1488	0.529773	GCGGCAAGATCGTGTATGGA	60.530	55.0	10.41	0.00	0.00	3.41	F
2806	4148	0.618458	AACAGTACGGTGATGGGCAT	59.382	50.0	0.00	0.00	0.00	4.40	F
3234	4584	0.036952	ACAGATCCTGGCAGAACGTG	60.037	55.0	17.94	10.43	35.51	4.49	F
3235	4585	0.036952	CAGATCCTGGCAGAACGTGT	60.037	55.0	17.94	0.00	0.00	4.49	F
3237	4587	0.037326	GATCCTGGCAGAACGTGTCA	60.037	55.0	17.94	0.00	38.94	3.58	F
3239	4589	0.320683	TCCTGGCAGAACGTGTCATG	60.321	55.0	17.94	0.00	40.99	3.07	F
3240	4590	0.603707	CCTGGCAGAACGTGTCATGT	60.604	55.0	17.94	0.00	40.99	3.21	F
4473	5989	0.674895	GCGTCTTCAGCATTGGGAGT	60.675	55.0	0.00	0.00	34.19	3.85	F
6035	7732	0.243636	GGGTTATGTGTTGTGCCAGC	59.756	55.0	0.00	0.00	0.00	4.85	F
6195	7893	1.425412	GAGGTTACGTCGCACAATGT	58.575	50.0	0.00	0.00	0.00	2.71	F
7032	10690	0.035881	CTCACTCAAGCTCTTGGGCA	59.964	55.0	9.28	0.00	44.66	5.36	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1449	1464	1.815003	CACGATCTTGCCGCATCCA	60.815	57.895	0.00	0.00	0.00	3.41	R
1949	1964	2.093288	TCTTCCTGCAGCTAATCACCAG	60.093	50.000	8.66	0.00	0.00	4.00	R
2269	3601	2.125512	CCGCCGCTGAACTTAGCT	60.126	61.111	0.00	0.00	41.51	3.32	R
2459	3800	2.253452	GCAGGACTTTGCGCTGTG	59.747	61.111	9.73	0.16	33.90	3.66	R
2499	3841	3.241067	AGGATGTTGTCATTGCAATGC	57.759	42.857	30.57	24.77	36.36	3.56	R
2650	3992	2.300152	ACTCTTCATTGAGGAAGACGCA	59.700	45.455	4.16	0.00	46.16	5.24	R
2918	4260	0.247460	TGACGATGTTGCTCTCCAGG	59.753	55.000	0.00	0.00	0.00	4.45	R
3815	5308	2.943978	CGACGGAGGGCTGAAAGGT	61.944	63.158	0.00	0.00	0.00	3.50	R
4473	5989	3.973206	TTGGCGAGGAGTATTTGAGAA	57.027	42.857	0.00	0.00	0.00	2.87	R
5334	7026	4.067016	CCGTTTTAGCACGCGCGT	62.067	61.111	32.73	32.73	45.49	6.01	R
5443	7137	1.794222	GGGCGAAACCGATCAACAG	59.206	57.895	0.00	0.00	40.62	3.16	R
5547	7242	2.171237	ACCGTATTAACCAGTTAGGGCC	59.829	50.000	0.00	0.00	43.89	5.80	R
5565	7260	1.293963	TGTCGTGTCGAGGTCTACCG	61.294	60.000	0.00	0.00	42.08	4.02	R
6507	8616	0.247460	CCTCCATGAAGCACGAGACA	59.753	55.000	0.00	0.00	0.00	3.41	R
6945	10603	0.467384	CATGGTCTCTCCGCATTCCT	59.533	55.000	0.00	0.00	39.52	3.36	R
7242	10901	0.678950	TCGTGCCATCTCACAACTCA	59.321	50.000	0.00	0.00	36.80	3.41	R
9238	13245	0.327000	CCCCTCATCCTGTCCCTCTT	60.327	60.000	0.00	0.00	0.00	2.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	5.880054	ACCTTAACCATCTTTGATCAACG	57.120	39.130	7.89	6.62	0.00	4.10
23	24	5.556915	ACCTTAACCATCTTTGATCAACGA	58.443	37.500	16.08	16.08	0.00	3.85
24	25	5.643777	ACCTTAACCATCTTTGATCAACGAG	59.356	40.000	18.24	10.23	0.00	4.18
25	26	5.447818	CCTTAACCATCTTTGATCAACGAGC	60.448	44.000	18.24	0.00	0.00	5.03
26	27	3.340814	ACCATCTTTGATCAACGAGCT	57.659	42.857	18.24	2.03	0.00	4.09
27	28	4.471904	ACCATCTTTGATCAACGAGCTA	57.528	40.909	18.24	0.00	0.00	3.32
28	29	4.437239	ACCATCTTTGATCAACGAGCTAG	58.563	43.478	18.24	8.24	0.00	3.42
29	30	4.081420	ACCATCTTTGATCAACGAGCTAGT	60.081	41.667	18.24	10.56	0.00	2.57
30	31	4.505922	CCATCTTTGATCAACGAGCTAGTC	59.494	45.833	18.24	0.00	0.00	2.59
31	32	5.347342	CATCTTTGATCAACGAGCTAGTCT	58.653	41.667	18.24	0.00	0.00	3.24
32	33	6.460261	CCATCTTTGATCAACGAGCTAGTCTA	60.460	42.308	18.24	0.00	0.00	2.59
33	34	6.510879	TCTTTGATCAACGAGCTAGTCTAA	57.489	37.500	7.89	0.00	0.00	2.10
34	35	7.101652	TCTTTGATCAACGAGCTAGTCTAAT	57.898	36.000	7.89	0.00	0.00	1.73
35	36	8.221965	TCTTTGATCAACGAGCTAGTCTAATA	57.778	34.615	7.89	0.00	0.00	0.98
36	37	8.346300	TCTTTGATCAACGAGCTAGTCTAATAG	58.654	37.037	7.89	0.00	0.00	1.73
37	38	7.803279	TTGATCAACGAGCTAGTCTAATAGA	57.197	36.000	3.38	0.00	0.00	1.98
38	39	7.428282	TGATCAACGAGCTAGTCTAATAGAG	57.572	40.000	0.00	0.00	0.00	2.43
39	40	6.428465	TGATCAACGAGCTAGTCTAATAGAGG	59.572	42.308	0.00	0.00	0.00	3.69
40	41	4.515944	TCAACGAGCTAGTCTAATAGAGGC	59.484	45.833	0.00	0.00	0.00	4.70
41	42	4.360951	ACGAGCTAGTCTAATAGAGGCT	57.639	45.455	10.56	10.56	44.48	4.58
42	43	4.320870	ACGAGCTAGTCTAATAGAGGCTC	58.679	47.826	20.10	20.10	40.19	4.70
43	44	4.202377	ACGAGCTAGTCTAATAGAGGCTCA	60.202	45.833	24.94	3.05	40.19	4.26
44	45	4.153475	CGAGCTAGTCTAATAGAGGCTCAC	59.847	50.000	24.94	4.72	40.19	3.51
45	46	5.313712	GAGCTAGTCTAATAGAGGCTCACT	58.686	45.833	22.76	12.32	40.19	3.41
46	47	6.442541	AGCTAGTCTAATAGAGGCTCACTA	57.557	41.667	18.26	12.80	40.19	2.74
47	48	7.027874	AGCTAGTCTAATAGAGGCTCACTAT	57.972	40.000	18.26	3.78	40.19	2.12
48	49	6.884295	AGCTAGTCTAATAGAGGCTCACTATG	59.116	42.308	18.26	9.12	40.19	2.23
49	50	6.094881	GCTAGTCTAATAGAGGCTCACTATGG	59.905	46.154	18.26	5.08	40.19	2.74
50	51	6.207509	AGTCTAATAGAGGCTCACTATGGA	57.792	41.667	18.26	4.56	33.67	3.41
51	52	6.007703	AGTCTAATAGAGGCTCACTATGGAC	58.992	44.000	18.26	15.56	33.67	4.02
52	53	5.770663	GTCTAATAGAGGCTCACTATGGACA	59.229	44.000	18.26	0.00	35.95	4.02
53	54	4.946478	AATAGAGGCTCACTATGGACAC	57.054	45.455	18.26	0.00	31.96	3.67
54	55	2.238084	AGAGGCTCACTATGGACACA	57.762	50.000	18.26	0.00	0.00	3.72
55	56	2.106566	AGAGGCTCACTATGGACACAG	58.893	52.381	18.26	0.00	0.00	3.66
56	57	1.827969	GAGGCTCACTATGGACACAGT	59.172	52.381	10.25	0.00	0.00	3.55
57	58	3.024547	GAGGCTCACTATGGACACAGTA	58.975	50.000	10.25	0.00	0.00	2.74
58	59	3.639094	GAGGCTCACTATGGACACAGTAT	59.361	47.826	10.25	0.00	0.00	2.12
59	60	4.033709	AGGCTCACTATGGACACAGTATT	58.966	43.478	0.00	0.00	0.00	1.89
60	61	4.471386	AGGCTCACTATGGACACAGTATTT	59.529	41.667	0.00	0.00	0.00	1.40
61	62	5.045578	AGGCTCACTATGGACACAGTATTTT	60.046	40.000	0.00	0.00	0.00	1.82
62	63	5.065218	GGCTCACTATGGACACAGTATTTTG	59.935	44.000	0.00	0.00	0.00	2.44
63	64	5.643777	GCTCACTATGGACACAGTATTTTGT	59.356	40.000	0.00	0.00	0.00	2.83
64	65	6.149474	GCTCACTATGGACACAGTATTTTGTT	59.851	38.462	0.00	0.00	0.00	2.83
65	66	7.308589	GCTCACTATGGACACAGTATTTTGTTT	60.309	37.037	0.00	0.00	0.00	2.83
66	67	9.214957	CTCACTATGGACACAGTATTTTGTTTA	57.785	33.333	0.00	0.00	0.00	2.01
67	68	9.733556	TCACTATGGACACAGTATTTTGTTTAT	57.266	29.630	0.00	0.00	0.00	1.40
68	69	9.773328	CACTATGGACACAGTATTTTGTTTATG	57.227	33.333	0.00	0.00	0.00	1.90
69	70	9.515226	ACTATGGACACAGTATTTTGTTTATGT	57.485	29.630	0.00	0.00	0.00	2.29
73	74	8.952278	TGGACACAGTATTTTGTTTATGTATCC	58.048	33.333	0.00	0.00	0.00	2.59
74	75	8.952278	GGACACAGTATTTTGTTTATGTATCCA	58.048	33.333	0.00	0.00	0.00	3.41
75	76	9.769093	GACACAGTATTTTGTTTATGTATCCAC	57.231	33.333	0.00	0.00	0.00	4.02
76	77	9.290988	ACACAGTATTTTGTTTATGTATCCACA	57.709	29.630	0.00	0.00	39.52	4.17
77	78	9.554724	CACAGTATTTTGTTTATGTATCCACAC	57.445	33.333	0.00	0.00	37.54	3.82
78	79	9.290988	ACAGTATTTTGTTTATGTATCCACACA	57.709	29.630	0.00	0.00	37.54	3.72
178	179	7.881775	AACAACTTTATTATTGCCTCTAGGG	57.118	36.000	0.00	0.00	35.18	3.53
193	194	6.232581	CCTCTAGGGCATATTTCTATGAGG	57.767	45.833	0.00	0.00	37.51	3.86
194	195	5.396213	CCTCTAGGGCATATTTCTATGAGGC	60.396	48.000	0.00	0.00	37.51	4.70
195	196	5.345418	TCTAGGGCATATTTCTATGAGGCT	58.655	41.667	0.00	0.00	37.51	4.58
196	197	4.298103	AGGGCATATTTCTATGAGGCTG	57.702	45.455	0.00	0.00	37.51	4.85
197	198	2.751806	GGGCATATTTCTATGAGGCTGC	59.248	50.000	0.00	0.00	37.51	5.25
198	199	2.751806	GGCATATTTCTATGAGGCTGCC	59.248	50.000	11.65	11.65	40.89	4.85
199	200	2.751806	GCATATTTCTATGAGGCTGCCC	59.248	50.000	16.57	7.66	37.51	5.36
200	201	3.350833	CATATTTCTATGAGGCTGCCCC	58.649	50.000	16.57	3.45	37.51	5.80
201	202	0.480252	ATTTCTATGAGGCTGCCCCC	59.520	55.000	16.57	8.46	0.00	5.40
202	203	0.918799	TTTCTATGAGGCTGCCCCCA	60.919	55.000	16.57	14.36	0.00	4.96
203	204	1.635817	TTCTATGAGGCTGCCCCCAC	61.636	60.000	16.57	5.47	0.00	4.61
204	205	3.096495	TATGAGGCTGCCCCCACC	61.096	66.667	16.57	0.34	0.00	4.61
205	206	3.960578	TATGAGGCTGCCCCCACCA	62.961	63.158	16.57	6.43	0.00	4.17
207	208	4.828296	GAGGCTGCCCCCACCATG	62.828	72.222	16.57	0.00	0.00	3.66
216	217	4.313707	CCCACCATGCCCCCAACA	62.314	66.667	0.00	0.00	0.00	3.33
217	218	2.203758	CCACCATGCCCCCAACAA	60.204	61.111	0.00	0.00	0.00	2.83
218	219	2.285024	CCACCATGCCCCCAACAAG	61.285	63.158	0.00	0.00	0.00	3.16
219	220	2.604382	ACCATGCCCCCAACAAGC	60.604	61.111	0.00	0.00	0.00	4.01
220	221	2.284112	CCATGCCCCCAACAAGCT	60.284	61.111	0.00	0.00	0.00	3.74
221	222	1.914764	CCATGCCCCCAACAAGCTT	60.915	57.895	0.00	0.00	0.00	3.74
222	223	1.593265	CATGCCCCCAACAAGCTTC	59.407	57.895	0.00	0.00	0.00	3.86
223	224	0.901580	CATGCCCCCAACAAGCTTCT	60.902	55.000	0.00	0.00	0.00	2.85
224	225	0.704076	ATGCCCCCAACAAGCTTCTA	59.296	50.000	0.00	0.00	0.00	2.10
225	226	0.704076	TGCCCCCAACAAGCTTCTAT	59.296	50.000	0.00	0.00	0.00	1.98
226	227	1.340991	TGCCCCCAACAAGCTTCTATC	60.341	52.381	0.00	0.00	0.00	2.08
227	228	1.340991	GCCCCCAACAAGCTTCTATCA	60.341	52.381	0.00	0.00	0.00	2.15
228	229	2.883888	GCCCCCAACAAGCTTCTATCAA	60.884	50.000	0.00	0.00	0.00	2.57
229	230	3.635591	CCCCCAACAAGCTTCTATCAAT	58.364	45.455	0.00	0.00	0.00	2.57
230	231	4.026052	CCCCCAACAAGCTTCTATCAATT	58.974	43.478	0.00	0.00	0.00	2.32
231	232	5.200483	CCCCCAACAAGCTTCTATCAATTA	58.800	41.667	0.00	0.00	0.00	1.40
232	233	5.835280	CCCCCAACAAGCTTCTATCAATTAT	59.165	40.000	0.00	0.00	0.00	1.28
233	234	6.239120	CCCCCAACAAGCTTCTATCAATTATG	60.239	42.308	0.00	0.00	0.00	1.90
234	235	6.239120	CCCCAACAAGCTTCTATCAATTATGG	60.239	42.308	0.00	0.00	0.00	2.74
235	236	6.239120	CCCAACAAGCTTCTATCAATTATGGG	60.239	42.308	0.00	0.00	35.71	4.00
236	237	6.211515	CAACAAGCTTCTATCAATTATGGGC	58.788	40.000	0.00	0.00	0.00	5.36
237	238	5.699143	ACAAGCTTCTATCAATTATGGGCT	58.301	37.500	0.00	0.00	0.00	5.19
238	239	5.533903	ACAAGCTTCTATCAATTATGGGCTG	59.466	40.000	0.00	0.00	0.00	4.85
239	240	5.573380	AGCTTCTATCAATTATGGGCTGA	57.427	39.130	0.00	0.00	0.00	4.26
240	241	6.137104	AGCTTCTATCAATTATGGGCTGAT	57.863	37.500	0.00	0.00	34.29	2.90
241	242	6.179040	AGCTTCTATCAATTATGGGCTGATC	58.821	40.000	0.00	0.00	32.22	2.92
242	243	5.356470	GCTTCTATCAATTATGGGCTGATCC	59.644	44.000	0.00	0.00	32.22	3.36
266	267	4.624628	GGGGCCCCCACCGAAAAA	62.625	66.667	33.01	0.00	44.65	1.94
267	268	2.284331	GGGCCCCCACCGAAAAAT	60.284	61.111	12.23	0.00	35.81	1.82
268	269	1.000612	GGGCCCCCACCGAAAAATA	59.999	57.895	12.23	0.00	35.81	1.40
269	270	0.615261	GGGCCCCCACCGAAAAATAA	60.615	55.000	12.23	0.00	35.81	1.40
270	271	0.533491	GGCCCCCACCGAAAAATAAC	59.467	55.000	0.00	0.00	0.00	1.89
271	272	1.552578	GCCCCCACCGAAAAATAACT	58.447	50.000	0.00	0.00	0.00	2.24
272	273	1.475280	GCCCCCACCGAAAAATAACTC	59.525	52.381	0.00	0.00	0.00	3.01
273	274	2.097036	CCCCCACCGAAAAATAACTCC	58.903	52.381	0.00	0.00	0.00	3.85
274	275	2.097036	CCCCACCGAAAAATAACTCCC	58.903	52.381	0.00	0.00	0.00	4.30
275	276	2.097036	CCCACCGAAAAATAACTCCCC	58.903	52.381	0.00	0.00	0.00	4.81
276	277	2.555670	CCCACCGAAAAATAACTCCCCA	60.556	50.000	0.00	0.00	0.00	4.96
277	278	2.490509	CCACCGAAAAATAACTCCCCAC	59.509	50.000	0.00	0.00	0.00	4.61
278	279	2.160813	CACCGAAAAATAACTCCCCACG	59.839	50.000	0.00	0.00	0.00	4.94
279	280	2.038820	ACCGAAAAATAACTCCCCACGA	59.961	45.455	0.00	0.00	0.00	4.35
280	281	3.075884	CCGAAAAATAACTCCCCACGAA	58.924	45.455	0.00	0.00	0.00	3.85
281	282	3.502979	CCGAAAAATAACTCCCCACGAAA	59.497	43.478	0.00	0.00	0.00	3.46
282	283	4.023021	CCGAAAAATAACTCCCCACGAAAA	60.023	41.667	0.00	0.00	0.00	2.29
283	284	5.151389	CGAAAAATAACTCCCCACGAAAAG	58.849	41.667	0.00	0.00	0.00	2.27
284	285	5.462530	AAAAATAACTCCCCACGAAAAGG	57.537	39.130	0.00	0.00	0.00	3.11
285	286	2.801077	ATAACTCCCCACGAAAAGGG	57.199	50.000	0.00	0.00	46.36	3.95
295	296	3.831715	CACGAAAAGGGGAATCTTGTC	57.168	47.619	0.00	0.00	0.00	3.18
297	298	1.130561	CGAAAAGGGGAATCTTGTCGC	59.869	52.381	4.56	0.00	44.26	5.19
298	299	4.077252	CGAAAAGGGGAATCTTGTCGCC	62.077	54.545	4.56	0.25	44.26	5.54
300	301	2.998949	GGGGAATCTTGTCGCCCT	59.001	61.111	0.00	0.00	43.21	5.19
301	302	1.452108	GGGGAATCTTGTCGCCCTG	60.452	63.158	0.00	0.00	43.21	4.45
302	303	1.452108	GGGAATCTTGTCGCCCTGG	60.452	63.158	0.00	0.00	37.59	4.45
303	304	2.115291	GGAATCTTGTCGCCCTGGC	61.115	63.158	0.00	0.00	37.85	4.85
315	316	2.751436	CCTGGCGGGAACATGGTG	60.751	66.667	6.48	0.00	37.23	4.17
316	317	2.034066	CTGGCGGGAACATGGTGT	59.966	61.111	0.00	0.00	0.00	4.16
317	318	1.603455	CTGGCGGGAACATGGTGTT	60.603	57.895	0.00	0.00	44.37	3.32
318	319	1.152652	TGGCGGGAACATGGTGTTT	60.153	52.632	0.00	0.00	41.28	2.83
319	320	0.757188	TGGCGGGAACATGGTGTTTT	60.757	50.000	0.00	0.00	41.28	2.43
320	321	0.391228	GGCGGGAACATGGTGTTTTT	59.609	50.000	0.00	0.00	41.28	1.94
321	322	1.604438	GGCGGGAACATGGTGTTTTTC	60.604	52.381	0.00	0.00	41.28	2.29
322	323	1.928595	GCGGGAACATGGTGTTTTTCG	60.929	52.381	0.00	3.69	41.28	3.46
323	324	1.778334	GGGAACATGGTGTTTTTCGC	58.222	50.000	0.00	0.00	41.28	4.70
324	325	1.339929	GGGAACATGGTGTTTTTCGCT	59.660	47.619	0.00	0.00	41.28	4.93
325	326	2.607038	GGGAACATGGTGTTTTTCGCTC	60.607	50.000	0.00	0.00	41.28	5.03
326	327	2.307049	GAACATGGTGTTTTTCGCTCG	58.693	47.619	0.00	0.00	41.28	5.03
327	328	0.040425	ACATGGTGTTTTTCGCTCGC	60.040	50.000	0.00	0.00	0.00	5.03
328	329	0.238289	CATGGTGTTTTTCGCTCGCT	59.762	50.000	0.00	0.00	0.00	4.93
329	330	0.951558	ATGGTGTTTTTCGCTCGCTT	59.048	45.000	0.00	0.00	0.00	4.68
330	331	0.736053	TGGTGTTTTTCGCTCGCTTT	59.264	45.000	0.00	0.00	0.00	3.51
331	332	1.268335	TGGTGTTTTTCGCTCGCTTTC	60.268	47.619	0.00	0.00	0.00	2.62
332	333	1.002792	GGTGTTTTTCGCTCGCTTTCT	60.003	47.619	0.00	0.00	0.00	2.52
333	334	2.299170	GTGTTTTTCGCTCGCTTTCTC	58.701	47.619	0.00	0.00	0.00	2.87
334	335	2.032808	GTGTTTTTCGCTCGCTTTCTCT	60.033	45.455	0.00	0.00	0.00	3.10
335	336	2.221055	TGTTTTTCGCTCGCTTTCTCTC	59.779	45.455	0.00	0.00	0.00	3.20
336	337	2.440539	TTTTCGCTCGCTTTCTCTCT	57.559	45.000	0.00	0.00	0.00	3.10
337	338	1.983972	TTTCGCTCGCTTTCTCTCTC	58.016	50.000	0.00	0.00	0.00	3.20
338	339	0.179187	TTCGCTCGCTTTCTCTCTCG	60.179	55.000	0.00	0.00	0.00	4.04
339	340	2.220887	CGCTCGCTTTCTCTCTCGC	61.221	63.158	0.00	0.00	0.00	5.03
340	341	1.153939	GCTCGCTTTCTCTCTCGCA	60.154	57.895	0.00	0.00	0.00	5.10
341	342	0.734253	GCTCGCTTTCTCTCTCGCAA	60.734	55.000	0.00	0.00	0.00	4.85
342	343	1.702886	CTCGCTTTCTCTCTCGCAAA	58.297	50.000	0.00	0.00	0.00	3.68
343	344	2.061773	CTCGCTTTCTCTCTCGCAAAA	58.938	47.619	0.00	0.00	0.00	2.44
344	345	2.670414	CTCGCTTTCTCTCTCGCAAAAT	59.330	45.455	0.00	0.00	0.00	1.82
345	346	3.067106	TCGCTTTCTCTCTCGCAAAATT	58.933	40.909	0.00	0.00	0.00	1.82
346	347	3.123621	TCGCTTTCTCTCTCGCAAAATTC	59.876	43.478	0.00	0.00	0.00	2.17
347	348	3.124297	CGCTTTCTCTCTCGCAAAATTCT	59.876	43.478	0.00	0.00	0.00	2.40
348	349	4.401714	GCTTTCTCTCTCGCAAAATTCTG	58.598	43.478	0.00	0.00	0.00	3.02
349	350	4.671250	GCTTTCTCTCTCGCAAAATTCTGG	60.671	45.833	0.00	0.00	0.00	3.86
350	351	3.961480	TCTCTCTCGCAAAATTCTGGA	57.039	42.857	0.00	0.00	0.00	3.86
351	352	4.271696	TCTCTCTCGCAAAATTCTGGAA	57.728	40.909	0.00	0.00	0.00	3.53
352	353	4.248859	TCTCTCTCGCAAAATTCTGGAAG	58.751	43.478	0.00	0.00	0.00	3.46
353	354	3.338249	TCTCTCGCAAAATTCTGGAAGG	58.662	45.455	0.00	0.00	0.00	3.46
354	355	3.077359	CTCTCGCAAAATTCTGGAAGGT	58.923	45.455	0.00	0.00	0.00	3.50
355	356	3.074412	TCTCGCAAAATTCTGGAAGGTC	58.926	45.455	0.00	0.00	0.00	3.85
356	357	2.159382	TCGCAAAATTCTGGAAGGTCC	58.841	47.619	0.00	0.00	36.96	4.46
357	358	1.202348	CGCAAAATTCTGGAAGGTCCC	59.798	52.381	0.00	0.00	35.03	4.46
358	359	1.202348	GCAAAATTCTGGAAGGTCCCG	59.798	52.381	0.00	0.00	35.03	5.14
359	360	1.818674	CAAAATTCTGGAAGGTCCCGG	59.181	52.381	0.00	0.00	35.03	5.73
360	361	1.368374	AAATTCTGGAAGGTCCCGGA	58.632	50.000	0.73	0.00	39.72	5.14
361	362	4.652166	TTCTGGAAGGTCCCGGAA	57.348	55.556	0.73	0.00	46.36	4.30
362	363	2.063774	TTCTGGAAGGTCCCGGAAC	58.936	57.895	0.73	0.00	44.36	3.62
363	364	0.765135	TTCTGGAAGGTCCCGGAACA	60.765	55.000	0.73	0.00	44.36	3.18
364	365	0.546747	TCTGGAAGGTCCCGGAACAT	60.547	55.000	0.73	0.00	38.59	2.71
365	366	0.328258	CTGGAAGGTCCCGGAACATT	59.672	55.000	0.73	0.00	35.03	2.71
366	367	0.774908	TGGAAGGTCCCGGAACATTT	59.225	50.000	0.73	0.00	35.03	2.32
367	368	1.146152	TGGAAGGTCCCGGAACATTTT	59.854	47.619	0.73	0.00	35.03	1.82
368	369	1.816835	GGAAGGTCCCGGAACATTTTC	59.183	52.381	0.73	0.00	0.00	2.29
369	370	2.510613	GAAGGTCCCGGAACATTTTCA	58.489	47.619	0.73	0.00	32.80	2.69
370	371	2.200373	AGGTCCCGGAACATTTTCAG	57.800	50.000	0.73	0.00	32.80	3.02
371	372	0.526211	GGTCCCGGAACATTTTCAGC	59.474	55.000	0.73	0.00	32.80	4.26
372	373	1.243902	GTCCCGGAACATTTTCAGCA	58.756	50.000	0.73	0.00	32.80	4.41
373	374	1.068541	GTCCCGGAACATTTTCAGCAC	60.069	52.381	0.73	0.00	32.80	4.40
374	375	0.243636	CCCGGAACATTTTCAGCACC	59.756	55.000	0.73	0.00	32.80	5.01
375	376	0.243636	CCGGAACATTTTCAGCACCC	59.756	55.000	0.00	0.00	32.80	4.61
376	377	1.247567	CGGAACATTTTCAGCACCCT	58.752	50.000	0.00	0.00	32.80	4.34
377	378	1.200020	CGGAACATTTTCAGCACCCTC	59.800	52.381	0.00	0.00	32.80	4.30
378	379	1.546029	GGAACATTTTCAGCACCCTCC	59.454	52.381	0.00	0.00	32.80	4.30
379	380	2.238521	GAACATTTTCAGCACCCTCCA	58.761	47.619	0.00	0.00	0.00	3.86
380	381	2.380064	ACATTTTCAGCACCCTCCAA	57.620	45.000	0.00	0.00	0.00	3.53
381	382	2.676748	ACATTTTCAGCACCCTCCAAA	58.323	42.857	0.00	0.00	0.00	3.28
382	383	3.037549	ACATTTTCAGCACCCTCCAAAA	58.962	40.909	0.00	0.00	0.00	2.44
383	384	3.647590	ACATTTTCAGCACCCTCCAAAAT	59.352	39.130	0.00	0.00	0.00	1.82
384	385	4.248058	CATTTTCAGCACCCTCCAAAATC	58.752	43.478	0.00	0.00	0.00	2.17
385	386	1.533625	TTCAGCACCCTCCAAAATCG	58.466	50.000	0.00	0.00	0.00	3.34
386	387	0.400213	TCAGCACCCTCCAAAATCGT	59.600	50.000	0.00	0.00	0.00	3.73
387	388	1.626321	TCAGCACCCTCCAAAATCGTA	59.374	47.619	0.00	0.00	0.00	3.43
388	389	1.737793	CAGCACCCTCCAAAATCGTAC	59.262	52.381	0.00	0.00	0.00	3.67
389	390	0.725117	GCACCCTCCAAAATCGTACG	59.275	55.000	9.53	9.53	0.00	3.67
390	391	1.942586	GCACCCTCCAAAATCGTACGT	60.943	52.381	16.05	0.00	0.00	3.57
391	392	2.674747	GCACCCTCCAAAATCGTACGTA	60.675	50.000	16.05	2.34	0.00	3.57
392	393	3.788937	CACCCTCCAAAATCGTACGTAT	58.211	45.455	16.05	4.80	0.00	3.06
393	394	4.186159	CACCCTCCAAAATCGTACGTATT	58.814	43.478	16.05	10.68	0.00	1.89
394	395	4.269363	CACCCTCCAAAATCGTACGTATTC	59.731	45.833	16.05	0.00	0.00	1.75
395	396	3.805971	CCCTCCAAAATCGTACGTATTCC	59.194	47.826	16.05	0.00	0.00	3.01
396	397	3.488310	CCTCCAAAATCGTACGTATTCCG	59.512	47.826	16.05	0.00	44.03	4.30
397	398	4.353737	CTCCAAAATCGTACGTATTCCGA	58.646	43.478	16.05	8.90	40.70	4.55
398	399	4.742417	TCCAAAATCGTACGTATTCCGAA	58.258	39.130	16.05	0.00	40.70	4.30
399	400	5.167121	TCCAAAATCGTACGTATTCCGAAA	58.833	37.500	16.05	0.00	40.70	3.46
400	401	5.636965	TCCAAAATCGTACGTATTCCGAAAA	59.363	36.000	16.05	0.00	40.70	2.29
401	402	6.313411	TCCAAAATCGTACGTATTCCGAAAAT	59.687	34.615	16.05	0.00	40.70	1.82
402	403	6.962678	CCAAAATCGTACGTATTCCGAAAATT	59.037	34.615	16.05	0.38	40.70	1.82
403	404	7.482428	CCAAAATCGTACGTATTCCGAAAATTT	59.518	33.333	16.05	6.77	40.70	1.82
404	405	8.842777	CAAAATCGTACGTATTCCGAAAATTTT	58.157	29.630	16.05	12.13	40.70	1.82
405	406	8.591698	AAATCGTACGTATTCCGAAAATTTTC	57.408	30.769	19.08	19.08	40.70	2.29
406	407	6.093532	TCGTACGTATTCCGAAAATTTTCC	57.906	37.500	22.15	8.51	40.70	3.13
407	408	4.951454	CGTACGTATTCCGAAAATTTTCCG	59.049	41.667	22.15	19.65	40.70	4.30
408	409	5.220191	CGTACGTATTCCGAAAATTTTCCGA	60.220	40.000	22.15	18.56	40.70	4.55
409	410	4.961511	ACGTATTCCGAAAATTTTCCGAC	58.038	39.130	22.15	12.85	40.70	4.79
410	411	4.692155	ACGTATTCCGAAAATTTTCCGACT	59.308	37.500	22.15	17.39	40.70	4.18
411	412	5.179929	ACGTATTCCGAAAATTTTCCGACTT	59.820	36.000	22.15	14.07	40.70	3.01
412	413	5.506832	CGTATTCCGAAAATTTTCCGACTTG	59.493	40.000	22.15	9.21	39.56	3.16
413	414	5.699097	ATTCCGAAAATTTTCCGACTTGA	57.301	34.783	22.15	8.95	33.68	3.02
414	415	5.699097	TTCCGAAAATTTTCCGACTTGAT	57.301	34.783	22.15	0.00	33.68	2.57
415	416	5.041951	TCCGAAAATTTTCCGACTTGATG	57.958	39.130	22.15	7.34	33.68	3.07
416	417	4.517453	TCCGAAAATTTTCCGACTTGATGT	59.483	37.500	22.15	0.00	33.68	3.06
417	418	5.009210	TCCGAAAATTTTCCGACTTGATGTT	59.991	36.000	22.15	0.00	33.68	2.71
418	419	5.689961	CCGAAAATTTTCCGACTTGATGTTT	59.310	36.000	22.15	0.00	33.68	2.83
419	420	6.200097	CCGAAAATTTTCCGACTTGATGTTTT	59.800	34.615	22.15	0.00	33.68	2.43
420	421	7.380065	CCGAAAATTTTCCGACTTGATGTTTTA	59.620	33.333	22.15	0.00	33.68	1.52
421	422	8.205297	CGAAAATTTTCCGACTTGATGTTTTAC	58.795	33.333	22.15	0.00	33.68	2.01
422	423	9.244799	GAAAATTTTCCGACTTGATGTTTTACT	57.755	29.630	18.43	0.00	0.00	2.24
423	424	8.797266	AAATTTTCCGACTTGATGTTTTACTC	57.203	30.769	0.00	0.00	0.00	2.59
424	425	5.934935	TTTCCGACTTGATGTTTTACTCC	57.065	39.130	0.00	0.00	0.00	3.85
425	426	3.581755	TCCGACTTGATGTTTTACTCCG	58.418	45.455	0.00	0.00	0.00	4.63
426	427	3.256383	TCCGACTTGATGTTTTACTCCGA	59.744	43.478	0.00	0.00	0.00	4.55
427	428	3.991773	CCGACTTGATGTTTTACTCCGAA	59.008	43.478	0.00	0.00	0.00	4.30
428	429	4.449743	CCGACTTGATGTTTTACTCCGAAA	59.550	41.667	0.00	0.00	0.00	3.46
429	430	5.371629	CGACTTGATGTTTTACTCCGAAAC	58.628	41.667	0.00	0.00	37.48	2.78
431	432	6.510478	CGACTTGATGTTTTACTCCGAAACAA	60.510	38.462	6.51	0.00	46.43	2.83
432	433	7.272037	ACTTGATGTTTTACTCCGAAACAAT	57.728	32.000	6.51	0.00	46.43	2.71
433	434	7.712797	ACTTGATGTTTTACTCCGAAACAATT	58.287	30.769	6.51	0.00	46.43	2.32
434	435	8.194769	ACTTGATGTTTTACTCCGAAACAATTT	58.805	29.630	6.51	0.00	46.43	1.82
435	436	8.934507	TTGATGTTTTACTCCGAAACAATTTT	57.065	26.923	6.51	0.00	46.43	1.82
436	437	8.346476	TGATGTTTTACTCCGAAACAATTTTG	57.654	30.769	6.51	0.00	46.43	2.44
437	438	7.436673	TGATGTTTTACTCCGAAACAATTTTGG	59.563	33.333	6.51	1.62	46.43	3.28
442	443	2.952116	TCCGAAACAATTTTGGAGGGT	58.048	42.857	6.22	0.00	46.01	4.34
443	444	2.625790	TCCGAAACAATTTTGGAGGGTG	59.374	45.455	6.22	0.00	46.01	4.61
444	445	2.403259	CGAAACAATTTTGGAGGGTGC	58.597	47.619	0.00	0.00	0.00	5.01
445	446	2.035832	CGAAACAATTTTGGAGGGTGCT	59.964	45.455	0.00	0.00	0.00	4.40
446	447	3.392882	GAAACAATTTTGGAGGGTGCTG	58.607	45.455	0.00	0.00	0.00	4.41
447	448	2.380064	ACAATTTTGGAGGGTGCTGA	57.620	45.000	0.00	0.00	0.00	4.26
448	449	2.676748	ACAATTTTGGAGGGTGCTGAA	58.323	42.857	0.00	0.00	0.00	3.02
449	450	3.037549	ACAATTTTGGAGGGTGCTGAAA	58.962	40.909	0.00	0.00	0.00	2.69
450	451	3.454082	ACAATTTTGGAGGGTGCTGAAAA	59.546	39.130	0.00	0.00	0.00	2.29
451	452	4.102996	ACAATTTTGGAGGGTGCTGAAAAT	59.897	37.500	0.00	0.00	0.00	1.82
452	453	3.749665	TTTTGGAGGGTGCTGAAAATG	57.250	42.857	0.00	0.00	0.00	2.32
453	454	2.380064	TTGGAGGGTGCTGAAAATGT	57.620	45.000	0.00	0.00	0.00	2.71
454	455	2.380064	TGGAGGGTGCTGAAAATGTT	57.620	45.000	0.00	0.00	0.00	2.71
455	456	2.238521	TGGAGGGTGCTGAAAATGTTC	58.761	47.619	0.00	0.00	0.00	3.18
456	457	1.546029	GGAGGGTGCTGAAAATGTTCC	59.454	52.381	0.00	0.00	32.28	3.62
457	458	1.200020	GAGGGTGCTGAAAATGTTCCG	59.800	52.381	0.00	0.00	32.28	4.30
458	459	0.243636	GGGTGCTGAAAATGTTCCGG	59.756	55.000	0.00	0.00	32.28	5.14
459	460	0.243636	GGTGCTGAAAATGTTCCGGG	59.756	55.000	0.00	0.00	32.28	5.73
460	461	1.243902	GTGCTGAAAATGTTCCGGGA	58.756	50.000	0.00	0.00	32.28	5.14
461	462	1.068541	GTGCTGAAAATGTTCCGGGAC	60.069	52.381	5.70	5.70	32.28	4.46
462	463	0.526211	GCTGAAAATGTTCCGGGACC	59.474	55.000	11.33	0.00	32.28	4.46
463	464	1.886655	GCTGAAAATGTTCCGGGACCT	60.887	52.381	11.33	0.00	32.28	3.85
464	465	2.514803	CTGAAAATGTTCCGGGACCTT	58.485	47.619	11.33	3.48	32.28	3.50
465	466	2.488153	CTGAAAATGTTCCGGGACCTTC	59.512	50.000	11.33	11.10	32.28	3.46
466	467	1.816835	GAAAATGTTCCGGGACCTTCC	59.183	52.381	11.33	0.00	35.23	3.46
473	474	4.218722	CGGGACCTTCCGGAAATG	57.781	61.111	19.39	14.60	45.78	2.32
474	475	1.298667	CGGGACCTTCCGGAAATGT	59.701	57.895	19.39	17.82	45.78	2.71
475	476	0.322187	CGGGACCTTCCGGAAATGTT	60.322	55.000	19.39	2.10	45.78	2.71
476	477	1.884928	CGGGACCTTCCGGAAATGTTT	60.885	52.381	19.39	0.15	45.78	2.83
477	478	1.816835	GGGACCTTCCGGAAATGTTTC	59.183	52.381	19.39	13.34	37.43	2.78
478	479	2.510613	GGACCTTCCGGAAATGTTTCA	58.489	47.619	19.39	0.00	38.92	2.69
479	480	2.488153	GGACCTTCCGGAAATGTTTCAG	59.512	50.000	19.39	3.22	38.92	3.02
480	481	3.408634	GACCTTCCGGAAATGTTTCAGA	58.591	45.455	19.39	0.00	38.92	3.27
481	482	3.412386	ACCTTCCGGAAATGTTTCAGAG	58.588	45.455	19.39	1.61	38.92	3.35
482	483	3.072476	ACCTTCCGGAAATGTTTCAGAGA	59.928	43.478	19.39	0.00	38.92	3.10
483	484	3.686726	CCTTCCGGAAATGTTTCAGAGAG	59.313	47.826	19.39	0.82	38.92	3.20
484	485	4.563580	CCTTCCGGAAATGTTTCAGAGAGA	60.564	45.833	19.39	0.00	38.92	3.10
485	486	4.617253	TCCGGAAATGTTTCAGAGAGAA	57.383	40.909	0.00	0.00	38.92	2.87
486	487	4.968259	TCCGGAAATGTTTCAGAGAGAAA	58.032	39.130	0.00	0.00	43.71	2.52
494	495	2.457366	TTCAGAGAGAAAACCGAGCC	57.543	50.000	0.00	0.00	32.05	4.70
495	496	0.243907	TCAGAGAGAAAACCGAGCCG	59.756	55.000	0.00	0.00	0.00	5.52
496	497	4.548318	TTCAGAGAGAAAACCGAGCCGG	62.548	54.545	11.48	11.48	42.60	6.13
512	513	2.946947	CGGAGGGTGCTGAAAATGT	58.053	52.632	0.00	0.00	0.00	2.71
513	514	1.247567	CGGAGGGTGCTGAAAATGTT	58.752	50.000	0.00	0.00	0.00	2.71
514	515	1.200020	CGGAGGGTGCTGAAAATGTTC	59.800	52.381	0.00	0.00	0.00	3.18
515	516	1.546029	GGAGGGTGCTGAAAATGTTCC	59.454	52.381	0.00	0.00	32.28	3.62
516	517	1.200020	GAGGGTGCTGAAAATGTTCCG	59.800	52.381	0.00	0.00	32.28	4.30
517	518	0.243636	GGGTGCTGAAAATGTTCCGG	59.756	55.000	0.00	0.00	32.28	5.14
518	519	0.388520	GGTGCTGAAAATGTTCCGGC	60.389	55.000	0.00	0.00	34.25	6.13
519	520	0.598065	GTGCTGAAAATGTTCCGGCT	59.402	50.000	0.00	0.00	34.55	5.52
520	521	1.000274	GTGCTGAAAATGTTCCGGCTT	60.000	47.619	0.00	0.00	34.55	4.35
521	522	1.000385	TGCTGAAAATGTTCCGGCTTG	60.000	47.619	0.00	0.00	34.55	4.01
522	523	1.269448	GCTGAAAATGTTCCGGCTTGA	59.731	47.619	0.00	0.00	32.28	3.02
523	524	2.094545	GCTGAAAATGTTCCGGCTTGAT	60.095	45.455	0.00	0.00	32.28	2.57
524	525	3.504863	CTGAAAATGTTCCGGCTTGATG	58.495	45.455	0.00	0.00	32.28	3.07
525	526	2.890311	TGAAAATGTTCCGGCTTGATGT	59.110	40.909	0.00	0.00	32.28	3.06
526	527	3.320541	TGAAAATGTTCCGGCTTGATGTT	59.679	39.130	0.00	0.00	32.28	2.71
527	528	4.202202	TGAAAATGTTCCGGCTTGATGTTT	60.202	37.500	0.00	0.00	32.28	2.83
528	529	4.335400	AAATGTTCCGGCTTGATGTTTT	57.665	36.364	0.00	0.00	0.00	2.43
529	530	5.461032	AAATGTTCCGGCTTGATGTTTTA	57.539	34.783	0.00	0.00	0.00	1.52
530	531	3.907894	TGTTCCGGCTTGATGTTTTAC	57.092	42.857	0.00	0.00	0.00	2.01
531	532	3.482436	TGTTCCGGCTTGATGTTTTACT	58.518	40.909	0.00	0.00	0.00	2.24
532	533	3.886505	TGTTCCGGCTTGATGTTTTACTT	59.113	39.130	0.00	0.00	0.00	2.24
533	534	4.023536	TGTTCCGGCTTGATGTTTTACTTC	60.024	41.667	0.00	0.00	0.00	3.01
534	535	2.739913	TCCGGCTTGATGTTTTACTTCG	59.260	45.455	0.00	0.00	0.00	3.79
535	536	2.739913	CCGGCTTGATGTTTTACTTCGA	59.260	45.455	0.00	0.00	0.00	3.71
536	537	3.187637	CCGGCTTGATGTTTTACTTCGAA	59.812	43.478	0.00	0.00	0.00	3.71
537	538	4.319911	CCGGCTTGATGTTTTACTTCGAAA	60.320	41.667	0.00	0.00	0.00	3.46
538	539	4.846137	CGGCTTGATGTTTTACTTCGAAAG	59.154	41.667	0.00	0.00	0.00	2.62
539	540	4.617223	GGCTTGATGTTTTACTTCGAAAGC	59.383	41.667	0.00	0.17	33.97	3.51
540	541	5.452777	GCTTGATGTTTTACTTCGAAAGCT	58.547	37.500	0.00	0.00	32.98	3.74
541	542	5.915196	GCTTGATGTTTTACTTCGAAAGCTT	59.085	36.000	0.00	0.00	32.98	3.74
542	543	6.129352	GCTTGATGTTTTACTTCGAAAGCTTG	60.129	38.462	0.00	0.00	32.98	4.01
543	544	6.612247	TGATGTTTTACTTCGAAAGCTTGA	57.388	33.333	0.00	0.00	0.00	3.02
544	545	7.202016	TGATGTTTTACTTCGAAAGCTTGAT	57.798	32.000	0.00	0.00	0.00	2.57
545	546	8.317891	TGATGTTTTACTTCGAAAGCTTGATA	57.682	30.769	0.00	0.00	0.00	2.15
546	547	8.779303	TGATGTTTTACTTCGAAAGCTTGATAA	58.221	29.630	0.00	0.00	0.00	1.75
547	548	9.607285	GATGTTTTACTTCGAAAGCTTGATAAA	57.393	29.630	0.00	0.00	0.00	1.40
548	549	8.776680	TGTTTTACTTCGAAAGCTTGATAAAC	57.223	30.769	0.00	4.55	0.00	2.01
549	550	8.399425	TGTTTTACTTCGAAAGCTTGATAAACA	58.601	29.630	0.00	6.84	0.00	2.83
550	551	9.394477	GTTTTACTTCGAAAGCTTGATAAACAT	57.606	29.630	0.00	0.00	0.00	2.71
551	552	9.959749	TTTTACTTCGAAAGCTTGATAAACATT	57.040	25.926	0.00	0.00	0.00	2.71
552	553	9.959749	TTTACTTCGAAAGCTTGATAAACATTT	57.040	25.926	0.00	0.00	0.00	2.32
553	554	9.959749	TTACTTCGAAAGCTTGATAAACATTTT	57.040	25.926	0.00	0.00	0.00	1.82
617	632	8.779354	ACACAGGAGAAACATTTTCTCTATAC	57.221	34.615	21.97	10.13	43.28	1.47
667	682	9.449719	TGGTTACCATTTGTTACAAATGTTTTT	57.550	25.926	34.32	23.09	36.24	1.94
759	774	9.788960	AGAGTAAAGCAGAAAACAAAAACTAAG	57.211	29.630	0.00	0.00	0.00	2.18
792	807	7.481275	AAAGAAACAATAAAATGTGGCTGTG	57.519	32.000	0.00	0.00	32.81	3.66
794	809	3.317603	ACAATAAAATGTGGCTGTGGC	57.682	42.857	0.00	0.00	37.82	5.01
833	848	2.491152	CCAATGCCGCGAATGCTT	59.509	55.556	8.23	0.00	39.65	3.91
835	850	2.202650	AATGCCGCGAATGCTTGC	60.203	55.556	8.23	0.00	39.65	4.01
836	851	2.703798	AATGCCGCGAATGCTTGCT	61.704	52.632	8.23	0.00	39.65	3.91
1101	1116	1.734477	CGTCCAGGAGTTCGCTGTG	60.734	63.158	0.00	0.00	0.00	3.66
1449	1464	2.690510	GAGGGCTTCTCCAGGGCT	60.691	66.667	0.00	0.00	36.52	5.19
1473	1488	0.529773	GCGGCAAGATCGTGTATGGA	60.530	55.000	10.41	0.00	0.00	3.41
1662	1677	5.791974	CACAGCTCGTTTCAATAAGACAATG	59.208	40.000	0.00	0.00	0.00	2.82
1663	1678	5.470098	ACAGCTCGTTTCAATAAGACAATGT	59.530	36.000	0.00	0.00	0.00	2.71
1858	1873	7.792032	TCGGATGAGGTTTTCTAATTCATACT	58.208	34.615	0.00	0.00	28.92	2.12
1949	1964	6.647067	GGTATGATGAACAATCTAGCAGTACC	59.353	42.308	0.00	0.00	36.15	3.34
1972	1987	3.244875	TGGTGATTAGCTGCAGGAAGAAA	60.245	43.478	17.12	0.00	0.00	2.52
2013	3345	1.923227	CTGTCTCGCCGCACTACTCA	61.923	60.000	0.00	0.00	0.00	3.41
2459	3800	1.437160	CACAACACACCTTGCCACC	59.563	57.895	0.00	0.00	0.00	4.61
2623	3965	1.531128	TGCCATTGCAGCAACTCCA	60.531	52.632	10.85	4.66	44.23	3.86
2650	3992	1.517832	GCCATGGCAGAGTACGAGT	59.482	57.895	32.08	0.00	41.49	4.18
2698	4040	1.077212	ATCAAGCTTCGGCATGCCT	60.077	52.632	33.07	12.66	44.74	4.75
2727	4069	1.072266	TTGATGTGCCCTGGTACCTT	58.928	50.000	14.36	0.00	0.00	3.50
2762	4104	2.774439	AACCAAATGACTGTCAACGC	57.226	45.000	15.31	0.00	0.00	4.84
2763	4105	1.967319	ACCAAATGACTGTCAACGCT	58.033	45.000	15.31	0.00	0.00	5.07
2775	4117	1.859080	GTCAACGCTTCTGTCTTCGTT	59.141	47.619	0.00	0.00	44.62	3.85
2794	4136	3.059188	CGTTGGACCACATGAAACAGTAC	60.059	47.826	0.00	0.00	0.00	2.73
2806	4148	0.618458	AACAGTACGGTGATGGGCAT	59.382	50.000	0.00	0.00	0.00	4.40
2828	4170	1.153804	GAAGTTCGGCGAGGACTCC	60.154	63.158	14.02	0.00	0.00	3.85
2844	4186	3.384937	TCCGTGGTGGAGGAATGTA	57.615	52.632	0.00	0.00	43.74	2.29
2900	4242	3.192633	GCCACCACCGTGAATTAAAGAAT	59.807	43.478	0.00	0.00	43.14	2.40
2918	4260	5.248870	AGAATGTGTATTGAATTTCCCGC	57.751	39.130	0.00	0.00	0.00	6.13
3015	4365	1.587043	GCCCGCAAAAGAACCTCCTC	61.587	60.000	0.00	0.00	0.00	3.71
3088	4438	1.000396	GGAAGCTGGGATTGGCTGT	60.000	57.895	0.00	0.00	38.91	4.40
3125	4475	1.855213	GCAAGCACATCCTTCGCACA	61.855	55.000	0.00	0.00	0.00	4.57
3234	4584	0.036952	ACAGATCCTGGCAGAACGTG	60.037	55.000	17.94	10.43	35.51	4.49
3235	4585	0.036952	CAGATCCTGGCAGAACGTGT	60.037	55.000	17.94	0.00	0.00	4.49
3236	4586	0.247736	AGATCCTGGCAGAACGTGTC	59.752	55.000	17.94	4.54	0.00	3.67
3237	4587	0.037326	GATCCTGGCAGAACGTGTCA	60.037	55.000	17.94	0.00	38.94	3.58
3238	4588	0.615331	ATCCTGGCAGAACGTGTCAT	59.385	50.000	17.94	0.00	40.99	3.06
3239	4589	0.320683	TCCTGGCAGAACGTGTCATG	60.321	55.000	17.94	0.00	40.99	3.07
3240	4590	0.603707	CCTGGCAGAACGTGTCATGT	60.604	55.000	17.94	0.00	40.99	3.21
3241	4591	1.229428	CTGGCAGAACGTGTCATGTT	58.771	50.000	9.42	10.25	40.99	2.71
3242	4592	2.412870	CTGGCAGAACGTGTCATGTTA	58.587	47.619	9.42	0.00	40.99	2.41
3298	4648	2.350102	GCGCTAAAAACTAGTTTGCCGT	60.350	45.455	21.22	9.83	32.36	5.68
3424	4776	3.722555	CGACTCGCACAAACAACATAT	57.277	42.857	0.00	0.00	0.00	1.78
3425	4777	4.833469	CGACTCGCACAAACAACATATA	57.167	40.909	0.00	0.00	0.00	0.86
3426	4778	4.565229	CGACTCGCACAAACAACATATAC	58.435	43.478	0.00	0.00	0.00	1.47
3427	4779	4.326278	CGACTCGCACAAACAACATATACT	59.674	41.667	0.00	0.00	0.00	2.12
3428	4780	5.498700	CGACTCGCACAAACAACATATACTC	60.499	44.000	0.00	0.00	0.00	2.59
3429	4781	4.630069	ACTCGCACAAACAACATATACTCC	59.370	41.667	0.00	0.00	0.00	3.85
3430	4782	3.936453	TCGCACAAACAACATATACTCCC	59.064	43.478	0.00	0.00	0.00	4.30
3431	4783	3.938963	CGCACAAACAACATATACTCCCT	59.061	43.478	0.00	0.00	0.00	4.20
3432	4784	4.394920	CGCACAAACAACATATACTCCCTT	59.605	41.667	0.00	0.00	0.00	3.95
3433	4785	5.447279	CGCACAAACAACATATACTCCCTTC	60.447	44.000	0.00	0.00	0.00	3.46
3434	4786	5.447279	GCACAAACAACATATACTCCCTTCG	60.447	44.000	0.00	0.00	0.00	3.79
3435	4787	5.642063	CACAAACAACATATACTCCCTTCGT	59.358	40.000	0.00	0.00	0.00	3.85
3436	4788	6.148811	CACAAACAACATATACTCCCTTCGTT	59.851	38.462	0.00	0.00	0.00	3.85
3437	4789	6.370718	ACAAACAACATATACTCCCTTCGTTC	59.629	38.462	0.00	0.00	0.00	3.95
3438	4790	5.019785	ACAACATATACTCCCTTCGTTCC	57.980	43.478	0.00	0.00	0.00	3.62
3439	4791	4.715297	ACAACATATACTCCCTTCGTTCCT	59.285	41.667	0.00	0.00	0.00	3.36
3440	4792	5.895534	ACAACATATACTCCCTTCGTTCCTA	59.104	40.000	0.00	0.00	0.00	2.94
3441	4793	6.381994	ACAACATATACTCCCTTCGTTCCTAA	59.618	38.462	0.00	0.00	0.00	2.69
3442	4794	7.093201	ACAACATATACTCCCTTCGTTCCTAAA	60.093	37.037	0.00	0.00	0.00	1.85
3443	4795	7.613551	ACATATACTCCCTTCGTTCCTAAAT	57.386	36.000	0.00	0.00	0.00	1.40
3444	4796	8.716674	ACATATACTCCCTTCGTTCCTAAATA	57.283	34.615	0.00	0.00	0.00	1.40
3445	4797	9.322769	ACATATACTCCCTTCGTTCCTAAATAT	57.677	33.333	0.00	0.00	0.00	1.28
3448	4800	8.904099	ATACTCCCTTCGTTCCTAAATATTTG	57.096	34.615	11.05	1.40	0.00	2.32
3449	4801	6.718294	ACTCCCTTCGTTCCTAAATATTTGT	58.282	36.000	11.05	0.00	0.00	2.83
3450	4802	6.822170	ACTCCCTTCGTTCCTAAATATTTGTC	59.178	38.462	11.05	0.00	0.00	3.18
3451	4803	6.954232	TCCCTTCGTTCCTAAATATTTGTCT	58.046	36.000	11.05	0.00	0.00	3.41
3452	4804	8.081517	TCCCTTCGTTCCTAAATATTTGTCTA	57.918	34.615	11.05	0.00	0.00	2.59
3453	4805	7.983484	TCCCTTCGTTCCTAAATATTTGTCTAC	59.017	37.037	11.05	3.71	0.00	2.59
3454	4806	7.767198	CCCTTCGTTCCTAAATATTTGTCTACA	59.233	37.037	11.05	0.00	0.00	2.74
3455	4807	8.601476	CCTTCGTTCCTAAATATTTGTCTACAC	58.399	37.037	11.05	0.15	0.00	2.90
3456	4808	9.367444	CTTCGTTCCTAAATATTTGTCTACACT	57.633	33.333	11.05	0.00	0.00	3.55
3457	4809	8.922058	TCGTTCCTAAATATTTGTCTACACTC	57.078	34.615	11.05	0.00	0.00	3.51
3458	4810	8.746530	TCGTTCCTAAATATTTGTCTACACTCT	58.253	33.333	11.05	0.00	0.00	3.24
3488	4840	9.696572	ATAAGTCTATATACATCCGTATGTGGT	57.303	33.333	3.56	0.00	45.99	4.16
3490	4842	8.734218	AGTCTATATACATCCGTATGTGGTAG	57.266	38.462	3.56	3.93	45.99	3.18
3491	4843	8.327271	AGTCTATATACATCCGTATGTGGTAGT	58.673	37.037	3.56	0.00	45.99	2.73
3492	4844	8.610896	GTCTATATACATCCGTATGTGGTAGTC	58.389	40.741	3.56	0.00	45.99	2.59
3493	4845	6.770746	ATATACATCCGTATGTGGTAGTCC	57.229	41.667	3.56	0.00	45.99	3.85
3494	4846	2.742348	ACATCCGTATGTGGTAGTCCA	58.258	47.619	0.00	0.00	44.79	4.02
3495	4847	3.305720	ACATCCGTATGTGGTAGTCCAT	58.694	45.455	0.00	0.00	44.79	3.41
3496	4848	3.709653	ACATCCGTATGTGGTAGTCCATT	59.290	43.478	0.00	0.00	44.79	3.16
3497	4849	4.163458	ACATCCGTATGTGGTAGTCCATTT	59.837	41.667	0.00	0.00	44.79	2.32
3498	4850	4.131649	TCCGTATGTGGTAGTCCATTTG	57.868	45.455	0.00	0.00	46.20	2.32
3499	4851	3.770388	TCCGTATGTGGTAGTCCATTTGA	59.230	43.478	0.00	0.00	46.20	2.69
3500	4852	4.223255	TCCGTATGTGGTAGTCCATTTGAA	59.777	41.667	0.00	0.00	46.20	2.69
3501	4853	4.938832	CCGTATGTGGTAGTCCATTTGAAA	59.061	41.667	0.00	0.00	46.20	2.69
3502	4854	5.588648	CCGTATGTGGTAGTCCATTTGAAAT	59.411	40.000	0.00	0.00	46.20	2.17
3503	4855	6.238374	CCGTATGTGGTAGTCCATTTGAAATC	60.238	42.308	0.00	0.00	46.20	2.17
3504	4856	6.538742	CGTATGTGGTAGTCCATTTGAAATCT	59.461	38.462	0.00	0.00	46.20	2.40
3505	4857	7.254455	CGTATGTGGTAGTCCATTTGAAATCTC	60.254	40.741	0.00	0.00	46.20	2.75
3506	4858	6.126863	TGTGGTAGTCCATTTGAAATCTCT	57.873	37.500	0.00	0.00	46.20	3.10
3507	4859	7.252612	TGTGGTAGTCCATTTGAAATCTCTA	57.747	36.000	0.00	0.00	46.20	2.43
3508	4860	7.685481	TGTGGTAGTCCATTTGAAATCTCTAA	58.315	34.615	0.00	0.00	46.20	2.10
3509	4861	8.160765	TGTGGTAGTCCATTTGAAATCTCTAAA	58.839	33.333	0.00	0.00	46.20	1.85
3510	4862	9.010029	GTGGTAGTCCATTTGAAATCTCTAAAA	57.990	33.333	0.00	0.00	46.20	1.52
3511	4863	9.581289	TGGTAGTCCATTTGAAATCTCTAAAAA	57.419	29.630	0.00	0.00	39.03	1.94
3515	4867	9.354673	AGTCCATTTGAAATCTCTAAAAAGACA	57.645	29.630	0.00	0.00	0.00	3.41
3516	4868	9.965824	GTCCATTTGAAATCTCTAAAAAGACAA	57.034	29.630	0.00	0.00	0.00	3.18
3533	4885	7.625828	AAAGACAAATATTTAGGAACGGAGG	57.374	36.000	0.00	0.00	0.00	4.30
3534	4886	5.681639	AGACAAATATTTAGGAACGGAGGG	58.318	41.667	0.00	0.00	0.00	4.30
3535	4887	5.427481	AGACAAATATTTAGGAACGGAGGGA	59.573	40.000	0.00	0.00	0.00	4.20
3536	4888	5.681639	ACAAATATTTAGGAACGGAGGGAG	58.318	41.667	0.00	0.00	0.00	4.30
3815	5308	2.501610	GGCAACAAAACGGGCCAA	59.498	55.556	4.39	0.00	45.70	4.52
3836	5333	2.859273	CTTTCAGCCCTCCGTCGCAT	62.859	60.000	0.00	0.00	0.00	4.73
4473	5989	0.674895	GCGTCTTCAGCATTGGGAGT	60.675	55.000	0.00	0.00	34.19	3.85
5334	7026	2.101917	GCTGGAGCAACTATACCGGTTA	59.898	50.000	15.04	4.24	41.59	2.85
5423	7117	7.297070	TCTTAGAAAAGGTTGCTATGGCACTC	61.297	42.308	1.95	0.00	39.58	3.51
5547	7242	1.362355	GTTCCACGGCAACCCTTTG	59.638	57.895	0.00	0.00	35.62	2.77
5565	7260	4.643334	CCTTTGGCCCTAACTGGTTAATAC	59.357	45.833	0.00	0.00	0.00	1.89
5582	7277	0.246360	TACGGTAGACCTCGACACGA	59.754	55.000	0.00	0.00	0.00	4.35
5728	7423	2.492881	TGCAACCCAATATGCAGTTCAG	59.507	45.455	0.00	0.00	46.87	3.02
5735	7430	3.119884	CCAATATGCAGTTCAGCGACAAA	60.120	43.478	0.00	0.00	37.31	2.83
5736	7431	4.475028	CAATATGCAGTTCAGCGACAAAA	58.525	39.130	0.00	0.00	37.31	2.44
5813	7508	0.904865	ACGCCTTGGATGAGGAGACA	60.905	55.000	1.65	0.00	38.73	3.41
5944	7639	1.308216	AGCCTTGGTCCCATAGGCT	60.308	57.895	24.39	24.39	45.96	4.58
6026	7723	2.373335	TGTGGCAAAGGGTTATGTGT	57.627	45.000	0.00	0.00	0.00	3.72
6027	7724	2.672098	TGTGGCAAAGGGTTATGTGTT	58.328	42.857	0.00	0.00	0.00	3.32
6035	7732	0.243636	GGGTTATGTGTTGTGCCAGC	59.756	55.000	0.00	0.00	0.00	4.85
6087	7784	3.264947	TCGTCTCGAGTCTGTGCC	58.735	61.111	13.13	0.00	0.00	5.01
6186	7884	2.169330	ACTTGAGGAGGAGGTTACGTC	58.831	52.381	0.00	0.00	0.00	4.34
6195	7893	1.425412	GAGGTTACGTCGCACAATGT	58.575	50.000	0.00	0.00	0.00	2.71
6196	7894	1.796459	GAGGTTACGTCGCACAATGTT	59.204	47.619	0.00	0.00	0.00	2.71
6204	7902	2.080693	GTCGCACAATGTTGGGATACA	58.919	47.619	0.00	0.00	40.25	2.29
6254	7952	2.755929	CCTTGACAAGGCTCTACGC	58.244	57.895	21.10	0.00	42.78	4.42
6283	7981	3.030652	CACCACGTGCTTGGAACC	58.969	61.111	10.91	0.00	39.24	3.62
6318	8016	3.621715	GTGTCCGTTCTCACTTTGTTTCT	59.378	43.478	0.00	0.00	0.00	2.52
6407	8106	2.094894	GTCTGTGTCATCATTGGCTTCG	59.905	50.000	0.00	0.00	0.00	3.79
6465	8188	5.618236	ACCTCAGTACCTTGAGTTTTTACC	58.382	41.667	10.32	0.00	42.41	2.85
6544	8653	2.122167	GCACCGACCACCCAAAACA	61.122	57.895	0.00	0.00	0.00	2.83
6610	8719	2.632996	CTGGGGTTGTCACTACTCTTGA	59.367	50.000	0.00	0.00	0.00	3.02
6693	10333	2.653702	GTCTGAGCTGAGCACCGT	59.346	61.111	7.39	0.00	0.00	4.83
6831	10479	5.462530	TTCACTCACTTCGTTCCTCAATA	57.537	39.130	0.00	0.00	0.00	1.90
6945	10603	4.811908	CAATCACATTTCCACTGCATTCA	58.188	39.130	0.00	0.00	0.00	2.57
7032	10690	0.035881	CTCACTCAAGCTCTTGGGCA	59.964	55.000	9.28	0.00	44.66	5.36
7044	10703	1.518056	CTTGGGCATGTGCACTTCGT	61.518	55.000	19.41	0.00	46.62	3.85
7073	10732	0.322366	TGCAAAGATCGGCATGGTCA	60.322	50.000	5.78	0.00	34.58	4.02
7198	10857	1.096967	GGGTCGTCACGGGTTTGTTT	61.097	55.000	0.00	0.00	0.00	2.83
7221	10880	2.333225	CTAGTCTAGCGGCGCCAG	59.667	66.667	30.40	25.66	0.00	4.85
7242	10901	2.103042	GCTGCGCGAGGTGATTCTT	61.103	57.895	12.10	0.00	0.00	2.52
7370	11030	2.370349	CTGTGAGATGGTAGGACTCGT	58.630	52.381	0.00	0.00	33.93	4.18
7890	11587	7.941431	TTTTTCTTGGTGTGACTTTAGGTTA	57.059	32.000	0.00	0.00	0.00	2.85
7931	11628	9.729023	AAAAACATTAACCTTAATTTTGCAAGC	57.271	25.926	0.00	0.00	31.28	4.01
7972	11670	6.625873	ATGACAAAAGTCTTTTCTCCAGTC	57.374	37.500	7.62	11.71	0.00	3.51
8072	11770	7.753132	GTGGCTTGAATATTTGAATACGAAACA	59.247	33.333	0.00	0.00	0.00	2.83
8075	11773	9.982291	GCTTGAATATTTGAATACGAAACAGTA	57.018	29.630	0.00	0.00	0.00	2.74
8113	11811	4.946772	AGTAAACTCGTAACTACTCCCTCC	59.053	45.833	0.00	0.00	0.00	4.30
8132	11830	6.266103	TCCCTCCGTATCAAAATATAAGACGT	59.734	38.462	0.00	0.00	0.00	4.34
8133	11831	6.927381	CCCTCCGTATCAAAATATAAGACGTT	59.073	38.462	0.00	0.00	0.00	3.99
8226	11931	7.010275	GGAGTCAAAACTAGAATTGGTATCGAC	59.990	40.741	0.00	0.00	35.28	4.20
8227	11932	6.817140	AGTCAAAACTAGAATTGGTATCGACC	59.183	38.462	0.00	0.00	39.15	4.79
8228	11933	7.526526	AGTCAAAACTAGAATTGGTATCGACCA	60.527	37.037	0.00	0.00	43.73	4.02
8270	11975	6.528321	CCTATATGTTCTGCAAGGAGAATCA	58.472	40.000	7.29	7.85	36.25	2.57
8278	11983	1.684248	GCAAGGAGAATCATGCCCTGT	60.684	52.381	0.00	0.00	41.74	4.00
8631	12612	4.670896	ACATGGTCGTGTGATATGATCA	57.329	40.909	0.00	0.00	39.65	2.92
8636	12617	3.809832	GGTCGTGTGATATGATCAAAGGG	59.190	47.826	0.00	0.00	41.69	3.95
8719	12700	7.696992	AATTGCCTATTTCCTTTCTACGAAA	57.303	32.000	0.00	0.00	32.82	3.46
8724	12705	7.497909	TGCCTATTTCCTTTCTACGAAATTAGG	59.502	37.037	0.00	6.88	39.04	2.69
8783	12764	7.712639	CAGTGAAGTCCATGCTAATACATACTT	59.287	37.037	0.00	0.00	33.55	2.24
8877	12858	3.260483	GATCAGCGCTGCGTGGAG	61.260	66.667	32.44	7.50	0.00	3.86
8999	12980	6.389830	TTTGCAGTCACACAATAAAGATGT	57.610	33.333	0.00	0.00	0.00	3.06
9117	13098	6.312426	CACTGTAAGAGCATTTCCTTGTCTAG	59.688	42.308	0.00	0.00	37.43	2.43
9160	13163	2.902705	TAAGCGATGGTATGGGTCAC	57.097	50.000	0.00	0.00	0.00	3.67
9170	13173	2.301870	GGTATGGGTCACACTGAGAACA	59.698	50.000	0.00	0.00	0.00	3.18
9296	13304	1.444553	CTGTGCTCCCGACGAACTC	60.445	63.158	0.00	0.00	0.00	3.01
9323	13331	0.116940	AGGTGCCCCAATCCAACAAT	59.883	50.000	0.00	0.00	0.00	2.71
9347	13355	4.082136	ACGGACCTTGAAGTCTAGATGAAC	60.082	45.833	0.00	0.00	36.95	3.18
9352	13360	5.108517	CCTTGAAGTCTAGATGAACTCTGC	58.891	45.833	0.00	0.00	35.28	4.26
9354	13362	4.348486	TGAAGTCTAGATGAACTCTGCCT	58.652	43.478	0.00	0.00	35.28	4.75
9358	13366	2.833943	TCTAGATGAACTCTGCCTTGCA	59.166	45.455	0.00	0.00	35.28	4.08
9414	13427	6.415280	GTGTGCTCTTGTATCGACTTATGTAG	59.585	42.308	0.00	0.00	0.00	2.74
9436	13449	3.991773	GCTGTTGCATGATTGTTCATTGT	59.008	39.130	0.00	0.00	40.70	2.71
9440	13453	5.692654	TGTTGCATGATTGTTCATTGTTCAG	59.307	36.000	0.00	0.00	40.70	3.02
9549	14418	9.342308	TGAACTAAAGATCTCTGAACACATTTT	57.658	29.630	0.00	0.00	0.00	1.82
9618	14488	2.624364	TCACAAGCATGCACATGAACTT	59.376	40.909	21.98	6.29	41.20	2.66
9626	14496	4.383649	GCATGCACATGAACTTTACAACAG	59.616	41.667	14.21	0.00	41.20	3.16
9627	14497	5.761003	CATGCACATGAACTTTACAACAGA	58.239	37.500	4.57	0.00	41.20	3.41
9641	14511	1.140852	CAACAGACACCCCTCTGAACA	59.859	52.381	3.23	0.00	40.28	3.18
9643	14513	2.057922	ACAGACACCCCTCTGAACAAT	58.942	47.619	3.23	0.00	40.28	2.71
9644	14514	2.224621	ACAGACACCCCTCTGAACAATG	60.225	50.000	3.23	0.00	40.28	2.82
9652	14522	4.284234	ACCCCTCTGAACAATGAAAAATGG	59.716	41.667	0.00	0.00	0.00	3.16
9654	14524	5.480073	CCCCTCTGAACAATGAAAAATGGTA	59.520	40.000	0.00	0.00	0.00	3.25
9754	14659	9.311916	GGAGATAATCTTCATATGTATCACTGC	57.688	37.037	1.90	0.00	0.00	4.40
9757	14662	9.311916	GATAATCTTCATATGTATCACTGCTCC	57.688	37.037	1.90	0.00	0.00	4.70
9758	14663	6.931790	ATCTTCATATGTATCACTGCTCCT	57.068	37.500	1.90	0.00	0.00	3.69
9759	14664	8.427902	AATCTTCATATGTATCACTGCTCCTA	57.572	34.615	1.90	0.00	0.00	2.94
9760	14665	8.606754	ATCTTCATATGTATCACTGCTCCTAT	57.393	34.615	1.90	0.00	0.00	2.57
9761	14666	7.834803	TCTTCATATGTATCACTGCTCCTATG	58.165	38.462	1.90	0.00	0.00	2.23
9762	14667	7.671398	TCTTCATATGTATCACTGCTCCTATGA	59.329	37.037	1.90	0.00	0.00	2.15
9763	14668	7.781324	TCATATGTATCACTGCTCCTATGAA	57.219	36.000	1.90	0.00	0.00	2.57
9764	14669	7.606349	TCATATGTATCACTGCTCCTATGAAC	58.394	38.462	1.90	0.00	0.00	3.18
9765	14670	5.876651	ATGTATCACTGCTCCTATGAACA	57.123	39.130	0.00	0.00	0.00	3.18
9766	14671	5.675684	TGTATCACTGCTCCTATGAACAA	57.324	39.130	0.00	0.00	0.00	2.83
9774	14679	4.445453	TGCTCCTATGAACAACTGCTATG	58.555	43.478	0.00	0.00	0.00	2.23
9779	14684	6.472016	TCCTATGAACAACTGCTATGAACAA	58.528	36.000	0.00	0.00	0.00	2.83
9882	14789	3.758554	CTGAAATCTTCACCGGAACCATT	59.241	43.478	9.46	0.00	35.46	3.16

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	5.347342	AGACTAGCTCGTTGATCAAAGATG	58.653	41.667	21.83	16.63	0.00	2.90
12	13	8.221965	TCTATTAGACTAGCTCGTTGATCAAA	57.778	34.615	10.35	0.00	0.00	2.69
13	14	7.041030	CCTCTATTAGACTAGCTCGTTGATCAA	60.041	40.741	3.38	3.38	0.00	2.57
14	15	6.428465	CCTCTATTAGACTAGCTCGTTGATCA	59.572	42.308	0.00	0.00	0.00	2.92
17	18	4.515944	GCCTCTATTAGACTAGCTCGTTGA	59.484	45.833	0.00	0.00	0.00	3.18
18	19	4.517453	AGCCTCTATTAGACTAGCTCGTTG	59.483	45.833	0.00	0.00	0.00	4.10
19	20	4.721132	AGCCTCTATTAGACTAGCTCGTT	58.279	43.478	0.00	0.00	0.00	3.85
20	21	4.202377	TGAGCCTCTATTAGACTAGCTCGT	60.202	45.833	20.20	0.00	46.35	4.18
21	22	4.153475	GTGAGCCTCTATTAGACTAGCTCG	59.847	50.000	20.20	0.00	46.35	5.03
22	23	5.313712	AGTGAGCCTCTATTAGACTAGCTC	58.686	45.833	19.46	19.46	44.25	4.09
23	24	5.319043	AGTGAGCCTCTATTAGACTAGCT	57.681	43.478	7.51	7.51	0.00	3.32
24	25	6.094881	CCATAGTGAGCCTCTATTAGACTAGC	59.905	46.154	0.00	0.00	0.00	3.42
25	26	7.335924	GTCCATAGTGAGCCTCTATTAGACTAG	59.664	44.444	0.00	0.00	32.12	2.57
26	27	7.169591	GTCCATAGTGAGCCTCTATTAGACTA	58.830	42.308	0.00	0.00	32.12	2.59
27	28	6.007703	GTCCATAGTGAGCCTCTATTAGACT	58.992	44.000	0.00	0.00	32.12	3.24
28	29	5.770663	TGTCCATAGTGAGCCTCTATTAGAC	59.229	44.000	0.00	11.95	33.64	2.59
29	30	5.770663	GTGTCCATAGTGAGCCTCTATTAGA	59.229	44.000	0.00	0.00	0.00	2.10
30	31	5.536538	TGTGTCCATAGTGAGCCTCTATTAG	59.463	44.000	0.00	0.00	0.00	1.73
31	32	5.454966	TGTGTCCATAGTGAGCCTCTATTA	58.545	41.667	0.00	0.00	0.00	0.98
32	33	4.290093	TGTGTCCATAGTGAGCCTCTATT	58.710	43.478	0.00	0.00	0.00	1.73
33	34	3.894427	CTGTGTCCATAGTGAGCCTCTAT	59.106	47.826	0.00	0.00	0.00	1.98
34	35	3.291584	CTGTGTCCATAGTGAGCCTCTA	58.708	50.000	0.00	0.00	0.00	2.43
35	36	2.106566	CTGTGTCCATAGTGAGCCTCT	58.893	52.381	0.00	0.00	0.00	3.69
36	37	1.827969	ACTGTGTCCATAGTGAGCCTC	59.172	52.381	0.00	0.00	31.34	4.70
37	38	1.944177	ACTGTGTCCATAGTGAGCCT	58.056	50.000	0.00	0.00	31.34	4.58
38	39	4.408182	AATACTGTGTCCATAGTGAGCC	57.592	45.455	6.92	0.00	34.54	4.70
39	40	5.643777	ACAAAATACTGTGTCCATAGTGAGC	59.356	40.000	6.92	0.00	34.54	4.26
40	41	7.672983	AACAAAATACTGTGTCCATAGTGAG	57.327	36.000	6.92	0.00	34.54	3.51
41	42	9.733556	ATAAACAAAATACTGTGTCCATAGTGA	57.266	29.630	6.92	0.00	34.54	3.41
42	43	9.773328	CATAAACAAAATACTGTGTCCATAGTG	57.227	33.333	6.92	0.00	34.54	2.74
43	44	9.515226	ACATAAACAAAATACTGTGTCCATAGT	57.485	29.630	2.25	2.25	36.69	2.12
47	48	8.952278	GGATACATAAACAAAATACTGTGTCCA	58.048	33.333	10.27	0.00	41.66	4.02
48	49	8.952278	TGGATACATAAACAAAATACTGTGTCC	58.048	33.333	8.72	8.72	46.17	4.02
152	153	9.574516	CCCTAGAGGCAATAATAAAGTTGTTAT	57.425	33.333	0.00	0.00	0.00	1.89
153	154	8.974060	CCCTAGAGGCAATAATAAAGTTGTTA	57.026	34.615	0.00	0.00	0.00	2.41
154	155	7.881775	CCCTAGAGGCAATAATAAAGTTGTT	57.118	36.000	0.00	0.00	0.00	2.83
170	171	5.396213	GCCTCATAGAAATATGCCCTAGAGG	60.396	48.000	0.00	0.00	41.32	3.69
171	172	5.424895	AGCCTCATAGAAATATGCCCTAGAG	59.575	44.000	0.00	0.00	0.00	2.43
172	173	5.188555	CAGCCTCATAGAAATATGCCCTAGA	59.811	44.000	0.00	0.00	0.00	2.43
173	174	5.426504	CAGCCTCATAGAAATATGCCCTAG	58.573	45.833	0.00	0.00	0.00	3.02
174	175	4.323792	GCAGCCTCATAGAAATATGCCCTA	60.324	45.833	0.00	0.00	0.00	3.53
175	176	3.560882	GCAGCCTCATAGAAATATGCCCT	60.561	47.826	0.00	0.00	0.00	5.19
176	177	2.751806	GCAGCCTCATAGAAATATGCCC	59.248	50.000	0.00	0.00	0.00	5.36
177	178	2.751806	GGCAGCCTCATAGAAATATGCC	59.248	50.000	3.29	0.00	44.48	4.40
178	179	2.751806	GGGCAGCCTCATAGAAATATGC	59.248	50.000	12.43	0.00	0.00	3.14
179	180	3.350833	GGGGCAGCCTCATAGAAATATG	58.649	50.000	12.43	0.00	0.00	1.78
180	181	2.310052	GGGGGCAGCCTCATAGAAATAT	59.690	50.000	15.19	0.00	0.00	1.28
181	182	1.705186	GGGGGCAGCCTCATAGAAATA	59.295	52.381	15.19	0.00	0.00	1.40
182	183	0.480252	GGGGGCAGCCTCATAGAAAT	59.520	55.000	15.19	0.00	0.00	2.17
183	184	0.918799	TGGGGGCAGCCTCATAGAAA	60.919	55.000	15.19	0.00	0.00	2.52
184	185	1.307778	TGGGGGCAGCCTCATAGAA	60.308	57.895	15.19	0.00	0.00	2.10
185	186	2.072487	GTGGGGGCAGCCTCATAGA	61.072	63.158	15.19	0.00	0.00	1.98
186	187	2.512896	GTGGGGGCAGCCTCATAG	59.487	66.667	15.19	0.00	0.00	2.23
187	188	3.096495	GGTGGGGGCAGCCTCATA	61.096	66.667	15.19	0.00	0.00	2.15
190	191	4.828296	CATGGTGGGGGCAGCCTC	62.828	72.222	12.43	7.24	0.00	4.70
199	200	3.842721	TTGTTGGGGGCATGGTGGG	62.843	63.158	0.00	0.00	0.00	4.61
200	201	2.203758	TTGTTGGGGGCATGGTGG	60.204	61.111	0.00	0.00	0.00	4.61
201	202	2.946346	GCTTGTTGGGGGCATGGTG	61.946	63.158	0.00	0.00	0.00	4.17
202	203	2.604382	GCTTGTTGGGGGCATGGT	60.604	61.111	0.00	0.00	0.00	3.55
203	204	1.891722	GAAGCTTGTTGGGGGCATGG	61.892	60.000	2.10	0.00	0.00	3.66
204	205	0.901580	AGAAGCTTGTTGGGGGCATG	60.902	55.000	2.10	0.00	0.00	4.06
205	206	0.704076	TAGAAGCTTGTTGGGGGCAT	59.296	50.000	2.10	0.00	0.00	4.40
206	207	0.704076	ATAGAAGCTTGTTGGGGGCA	59.296	50.000	2.10	0.00	0.00	5.36
207	208	1.340991	TGATAGAAGCTTGTTGGGGGC	60.341	52.381	2.10	0.00	0.00	5.80
208	209	2.806945	TGATAGAAGCTTGTTGGGGG	57.193	50.000	2.10	0.00	0.00	5.40
209	210	6.239120	CCATAATTGATAGAAGCTTGTTGGGG	60.239	42.308	2.10	0.00	0.00	4.96
210	211	6.239120	CCCATAATTGATAGAAGCTTGTTGGG	60.239	42.308	2.10	7.56	0.00	4.12
211	212	6.736794	GCCCATAATTGATAGAAGCTTGTTGG	60.737	42.308	2.10	1.27	0.00	3.77
212	213	6.040166	AGCCCATAATTGATAGAAGCTTGTTG	59.960	38.462	2.10	0.00	0.00	3.33
213	214	6.040166	CAGCCCATAATTGATAGAAGCTTGTT	59.960	38.462	2.10	0.00	0.00	2.83
214	215	5.533903	CAGCCCATAATTGATAGAAGCTTGT	59.466	40.000	2.10	1.06	0.00	3.16
215	216	5.766670	TCAGCCCATAATTGATAGAAGCTTG	59.233	40.000	2.10	0.00	0.00	4.01
216	217	5.945310	TCAGCCCATAATTGATAGAAGCTT	58.055	37.500	0.00	0.00	0.00	3.74
217	218	5.573380	TCAGCCCATAATTGATAGAAGCT	57.427	39.130	0.00	0.00	0.00	3.74
218	219	5.356470	GGATCAGCCCATAATTGATAGAAGC	59.644	44.000	0.00	0.00	32.03	3.86
219	220	6.998968	GGATCAGCCCATAATTGATAGAAG	57.001	41.667	0.00	0.00	32.03	2.85
249	250	2.517582	TATTTTTCGGTGGGGGCCCC	62.518	60.000	36.02	36.02	45.71	5.80
250	251	0.615261	TTATTTTTCGGTGGGGGCCC	60.615	55.000	15.76	15.76	0.00	5.80
251	252	0.533491	GTTATTTTTCGGTGGGGGCC	59.467	55.000	0.00	0.00	0.00	5.80
252	253	1.475280	GAGTTATTTTTCGGTGGGGGC	59.525	52.381	0.00	0.00	0.00	5.80
253	254	2.097036	GGAGTTATTTTTCGGTGGGGG	58.903	52.381	0.00	0.00	0.00	5.40
254	255	2.097036	GGGAGTTATTTTTCGGTGGGG	58.903	52.381	0.00	0.00	0.00	4.96
255	256	2.097036	GGGGAGTTATTTTTCGGTGGG	58.903	52.381	0.00	0.00	0.00	4.61
256	257	2.490509	GTGGGGAGTTATTTTTCGGTGG	59.509	50.000	0.00	0.00	0.00	4.61
257	258	2.160813	CGTGGGGAGTTATTTTTCGGTG	59.839	50.000	0.00	0.00	0.00	4.94
258	259	2.038820	TCGTGGGGAGTTATTTTTCGGT	59.961	45.455	0.00	0.00	0.00	4.69
259	260	2.702261	TCGTGGGGAGTTATTTTTCGG	58.298	47.619	0.00	0.00	0.00	4.30
260	261	4.752661	TTTCGTGGGGAGTTATTTTTCG	57.247	40.909	0.00	0.00	0.00	3.46
261	262	5.466819	CCTTTTCGTGGGGAGTTATTTTTC	58.533	41.667	0.00	0.00	0.00	2.29
262	263	4.282449	CCCTTTTCGTGGGGAGTTATTTTT	59.718	41.667	0.00	0.00	45.18	1.94
263	264	3.830178	CCCTTTTCGTGGGGAGTTATTTT	59.170	43.478	0.00	0.00	45.18	1.82
264	265	3.427573	CCCTTTTCGTGGGGAGTTATTT	58.572	45.455	0.00	0.00	45.18	1.40
265	266	3.081710	CCCTTTTCGTGGGGAGTTATT	57.918	47.619	0.00	0.00	45.18	1.40
266	267	2.801077	CCCTTTTCGTGGGGAGTTAT	57.199	50.000	0.00	0.00	45.18	1.89
273	274	1.818674	CAAGATTCCCCTTTTCGTGGG	59.181	52.381	0.00	0.00	44.19	4.61
274	275	2.488153	GACAAGATTCCCCTTTTCGTGG	59.512	50.000	0.00	0.00	0.00	4.94
275	276	2.159627	CGACAAGATTCCCCTTTTCGTG	59.840	50.000	0.00	0.00	39.86	4.35
276	277	2.423577	CGACAAGATTCCCCTTTTCGT	58.576	47.619	0.00	0.00	39.86	3.85
277	278	1.130561	GCGACAAGATTCCCCTTTTCG	59.869	52.381	0.00	0.00	44.50	3.46
278	279	1.472878	GGCGACAAGATTCCCCTTTTC	59.527	52.381	0.00	0.00	0.00	2.29
279	280	1.545841	GGCGACAAGATTCCCCTTTT	58.454	50.000	0.00	0.00	0.00	2.27
280	281	0.323451	GGGCGACAAGATTCCCCTTT	60.323	55.000	0.00	0.00	32.60	3.11
281	282	1.208165	AGGGCGACAAGATTCCCCTT	61.208	55.000	0.00	0.00	43.43	3.95
282	283	1.616628	AGGGCGACAAGATTCCCCT	60.617	57.895	0.00	0.00	41.19	4.79
283	284	1.452108	CAGGGCGACAAGATTCCCC	60.452	63.158	0.00	0.00	39.59	4.81
284	285	1.452108	CCAGGGCGACAAGATTCCC	60.452	63.158	0.00	0.00	39.05	3.97
285	286	2.115291	GCCAGGGCGACAAGATTCC	61.115	63.158	0.00	0.00	0.00	3.01
286	287	3.502572	GCCAGGGCGACAAGATTC	58.497	61.111	0.00	0.00	0.00	2.52
298	299	2.751436	CACCATGTTCCCGCCAGG	60.751	66.667	0.00	0.00	37.24	4.45
299	300	1.178534	AAACACCATGTTCCCGCCAG	61.179	55.000	0.00	0.00	40.14	4.85
300	301	0.757188	AAAACACCATGTTCCCGCCA	60.757	50.000	0.00	0.00	40.14	5.69
301	302	0.391228	AAAAACACCATGTTCCCGCC	59.609	50.000	0.00	0.00	40.14	6.13
302	303	1.778334	GAAAAACACCATGTTCCCGC	58.222	50.000	0.00	0.00	40.14	6.13
303	304	1.928595	GCGAAAAACACCATGTTCCCG	60.929	52.381	0.00	1.31	40.14	5.14
304	305	1.339929	AGCGAAAAACACCATGTTCCC	59.660	47.619	0.00	0.00	40.14	3.97
305	306	2.661594	GAGCGAAAAACACCATGTTCC	58.338	47.619	0.00	0.00	40.14	3.62
306	307	2.307049	CGAGCGAAAAACACCATGTTC	58.693	47.619	0.00	0.00	40.14	3.18
307	308	1.599419	GCGAGCGAAAAACACCATGTT	60.599	47.619	0.00	0.00	43.41	2.71
308	309	0.040425	GCGAGCGAAAAACACCATGT	60.040	50.000	0.00	0.00	0.00	3.21
309	310	0.238289	AGCGAGCGAAAAACACCATG	59.762	50.000	0.00	0.00	0.00	3.66
310	311	0.951558	AAGCGAGCGAAAAACACCAT	59.048	45.000	0.00	0.00	0.00	3.55
311	312	0.736053	AAAGCGAGCGAAAAACACCA	59.264	45.000	0.00	0.00	0.00	4.17
312	313	1.002792	AGAAAGCGAGCGAAAAACACC	60.003	47.619	0.00	0.00	0.00	4.16
313	314	2.032808	AGAGAAAGCGAGCGAAAAACAC	60.033	45.455	0.00	0.00	0.00	3.32
314	315	2.210116	AGAGAAAGCGAGCGAAAAACA	58.790	42.857	0.00	0.00	0.00	2.83
315	316	2.476997	AGAGAGAAAGCGAGCGAAAAAC	59.523	45.455	0.00	0.00	0.00	2.43
316	317	2.731976	GAGAGAGAAAGCGAGCGAAAAA	59.268	45.455	0.00	0.00	0.00	1.94
317	318	2.329379	GAGAGAGAAAGCGAGCGAAAA	58.671	47.619	0.00	0.00	0.00	2.29
318	319	1.729472	CGAGAGAGAAAGCGAGCGAAA	60.729	52.381	0.00	0.00	0.00	3.46
319	320	0.179187	CGAGAGAGAAAGCGAGCGAA	60.179	55.000	0.00	0.00	0.00	4.70
320	321	1.425825	CGAGAGAGAAAGCGAGCGA	59.574	57.895	0.00	0.00	0.00	4.93
321	322	2.220887	GCGAGAGAGAAAGCGAGCG	61.221	63.158	0.00	0.00	0.00	5.03
322	323	0.734253	TTGCGAGAGAGAAAGCGAGC	60.734	55.000	0.00	0.00	0.00	5.03
323	324	1.702886	TTTGCGAGAGAGAAAGCGAG	58.297	50.000	0.00	0.00	0.00	5.03
324	325	2.148916	TTTTGCGAGAGAGAAAGCGA	57.851	45.000	0.00	0.00	0.00	4.93
325	326	3.124297	AGAATTTTGCGAGAGAGAAAGCG	59.876	43.478	0.00	0.00	0.00	4.68
326	327	4.401714	CAGAATTTTGCGAGAGAGAAAGC	58.598	43.478	0.00	0.00	0.00	3.51
327	328	4.692625	TCCAGAATTTTGCGAGAGAGAAAG	59.307	41.667	0.00	0.00	0.00	2.62
328	329	4.641396	TCCAGAATTTTGCGAGAGAGAAA	58.359	39.130	0.00	0.00	0.00	2.52
329	330	4.271696	TCCAGAATTTTGCGAGAGAGAA	57.728	40.909	0.00	0.00	0.00	2.87
330	331	3.961480	TCCAGAATTTTGCGAGAGAGA	57.039	42.857	0.00	0.00	0.00	3.10
331	332	3.373439	CCTTCCAGAATTTTGCGAGAGAG	59.627	47.826	0.00	0.00	0.00	3.20
332	333	3.244561	ACCTTCCAGAATTTTGCGAGAGA	60.245	43.478	0.00	0.00	0.00	3.10
333	334	3.077359	ACCTTCCAGAATTTTGCGAGAG	58.923	45.455	0.00	0.00	0.00	3.20
334	335	3.074412	GACCTTCCAGAATTTTGCGAGA	58.926	45.455	0.00	0.00	0.00	4.04
335	336	2.162408	GGACCTTCCAGAATTTTGCGAG	59.838	50.000	0.00	0.00	36.28	5.03
336	337	2.159382	GGACCTTCCAGAATTTTGCGA	58.841	47.619	0.00	0.00	36.28	5.10
337	338	1.202348	GGGACCTTCCAGAATTTTGCG	59.798	52.381	0.00	0.00	38.64	4.85
338	339	1.202348	CGGGACCTTCCAGAATTTTGC	59.798	52.381	0.00	0.00	38.64	3.68
339	340	1.818674	CCGGGACCTTCCAGAATTTTG	59.181	52.381	0.00	0.00	38.64	2.44
340	341	1.708551	TCCGGGACCTTCCAGAATTTT	59.291	47.619	0.00	0.00	38.64	1.82
341	342	1.368374	TCCGGGACCTTCCAGAATTT	58.632	50.000	0.00	0.00	38.64	1.82
342	343	1.004394	GTTCCGGGACCTTCCAGAATT	59.996	52.381	0.00	0.00	38.64	2.17
343	344	0.618981	GTTCCGGGACCTTCCAGAAT	59.381	55.000	0.00	0.00	38.64	2.40
344	345	0.765135	TGTTCCGGGACCTTCCAGAA	60.765	55.000	11.33	0.00	38.64	3.02
345	346	0.546747	ATGTTCCGGGACCTTCCAGA	60.547	55.000	11.33	0.00	38.64	3.86
346	347	0.328258	AATGTTCCGGGACCTTCCAG	59.672	55.000	11.33	0.00	38.64	3.86
347	348	0.774908	AAATGTTCCGGGACCTTCCA	59.225	50.000	11.33	0.00	38.64	3.53
348	349	1.816835	GAAAATGTTCCGGGACCTTCC	59.183	52.381	11.33	0.00	35.23	3.46
349	350	2.488153	CTGAAAATGTTCCGGGACCTTC	59.512	50.000	11.33	11.10	32.28	3.46
350	351	2.514803	CTGAAAATGTTCCGGGACCTT	58.485	47.619	11.33	3.48	32.28	3.50
351	352	1.886655	GCTGAAAATGTTCCGGGACCT	60.887	52.381	11.33	0.00	32.28	3.85
352	353	0.526211	GCTGAAAATGTTCCGGGACC	59.474	55.000	11.33	0.00	32.28	4.46
353	354	1.068541	GTGCTGAAAATGTTCCGGGAC	60.069	52.381	5.70	5.70	32.28	4.46
354	355	1.243902	GTGCTGAAAATGTTCCGGGA	58.756	50.000	0.00	0.00	32.28	5.14
355	356	0.243636	GGTGCTGAAAATGTTCCGGG	59.756	55.000	0.00	0.00	32.28	5.73
356	357	0.243636	GGGTGCTGAAAATGTTCCGG	59.756	55.000	0.00	0.00	32.28	5.14
357	358	1.200020	GAGGGTGCTGAAAATGTTCCG	59.800	52.381	0.00	0.00	32.28	4.30
358	359	1.546029	GGAGGGTGCTGAAAATGTTCC	59.454	52.381	0.00	0.00	32.28	3.62
359	360	2.238521	TGGAGGGTGCTGAAAATGTTC	58.761	47.619	0.00	0.00	0.00	3.18
360	361	2.380064	TGGAGGGTGCTGAAAATGTT	57.620	45.000	0.00	0.00	0.00	2.71
361	362	2.380064	TTGGAGGGTGCTGAAAATGT	57.620	45.000	0.00	0.00	0.00	2.71
362	363	3.749665	TTTTGGAGGGTGCTGAAAATG	57.250	42.857	0.00	0.00	0.00	2.32
363	364	3.056607	CGATTTTGGAGGGTGCTGAAAAT	60.057	43.478	0.00	0.00	0.00	1.82
364	365	2.295909	CGATTTTGGAGGGTGCTGAAAA	59.704	45.455	0.00	0.00	0.00	2.29
365	366	1.885887	CGATTTTGGAGGGTGCTGAAA	59.114	47.619	0.00	0.00	0.00	2.69
366	367	1.202879	ACGATTTTGGAGGGTGCTGAA	60.203	47.619	0.00	0.00	0.00	3.02
367	368	0.400213	ACGATTTTGGAGGGTGCTGA	59.600	50.000	0.00	0.00	0.00	4.26
368	369	1.737793	GTACGATTTTGGAGGGTGCTG	59.262	52.381	0.00	0.00	0.00	4.41
369	370	1.674817	CGTACGATTTTGGAGGGTGCT	60.675	52.381	10.44	0.00	0.00	4.40
370	371	0.725117	CGTACGATTTTGGAGGGTGC	59.275	55.000	10.44	0.00	0.00	5.01
371	372	2.088950	ACGTACGATTTTGGAGGGTG	57.911	50.000	24.41	0.00	0.00	4.61
372	373	4.436332	GAATACGTACGATTTTGGAGGGT	58.564	43.478	24.41	0.00	0.00	4.34
373	374	3.805971	GGAATACGTACGATTTTGGAGGG	59.194	47.826	24.41	0.00	0.00	4.30
374	375	3.488310	CGGAATACGTACGATTTTGGAGG	59.512	47.826	24.41	0.00	37.93	4.30
375	376	4.353737	TCGGAATACGTACGATTTTGGAG	58.646	43.478	24.41	6.19	44.69	3.86
376	377	4.368874	TCGGAATACGTACGATTTTGGA	57.631	40.909	24.41	9.30	44.69	3.53
377	378	5.453281	TTTCGGAATACGTACGATTTTGG	57.547	39.130	24.41	6.99	44.69	3.28
378	379	7.942145	AATTTTCGGAATACGTACGATTTTG	57.058	32.000	24.41	12.57	44.69	2.44
379	380	8.953507	AAAATTTTCGGAATACGTACGATTTT	57.046	26.923	24.41	15.22	44.69	1.82
380	381	7.693536	GGAAAATTTTCGGAATACGTACGATTT	59.306	33.333	24.41	14.40	44.69	2.17
381	382	7.182089	GGAAAATTTTCGGAATACGTACGATT	58.818	34.615	24.41	16.42	44.69	3.34
382	383	6.508404	CGGAAAATTTTCGGAATACGTACGAT	60.508	38.462	26.04	8.32	44.69	3.73
383	384	5.220191	CGGAAAATTTTCGGAATACGTACGA	60.220	40.000	26.04	6.04	44.69	3.43
384	385	4.951454	CGGAAAATTTTCGGAATACGTACG	59.049	41.667	26.04	15.01	44.69	3.67
385	386	5.953777	GTCGGAAAATTTTCGGAATACGTAC	59.046	40.000	31.05	19.16	44.51	3.67
386	387	5.868801	AGTCGGAAAATTTTCGGAATACGTA	59.131	36.000	31.05	13.54	44.51	3.57
387	388	4.692155	AGTCGGAAAATTTTCGGAATACGT	59.308	37.500	31.05	16.90	44.51	3.57
388	389	5.212589	AGTCGGAAAATTTTCGGAATACG	57.787	39.130	31.05	22.95	44.51	3.06
389	390	6.604930	TCAAGTCGGAAAATTTTCGGAATAC	58.395	36.000	31.05	22.83	44.51	1.89
390	391	6.804770	TCAAGTCGGAAAATTTTCGGAATA	57.195	33.333	31.05	19.17	44.51	1.75
391	392	5.699097	TCAAGTCGGAAAATTTTCGGAAT	57.301	34.783	31.05	28.58	44.51	3.01
392	393	5.009210	ACATCAAGTCGGAAAATTTTCGGAA	59.991	36.000	31.05	20.99	44.51	4.30
393	394	4.517453	ACATCAAGTCGGAAAATTTTCGGA	59.483	37.500	27.75	27.75	42.03	4.55
394	395	4.794169	ACATCAAGTCGGAAAATTTTCGG	58.206	39.130	24.87	24.87	38.06	4.30
395	396	6.747659	AAACATCAAGTCGGAAAATTTTCG	57.252	33.333	21.53	16.99	38.06	3.46
396	397	9.244799	AGTAAAACATCAAGTCGGAAAATTTTC	57.755	29.630	20.51	20.51	36.46	2.29
397	398	9.244799	GAGTAAAACATCAAGTCGGAAAATTTT	57.755	29.630	2.28	2.28	0.00	1.82
398	399	7.865889	GGAGTAAAACATCAAGTCGGAAAATTT	59.134	33.333	0.00	0.00	0.00	1.82
399	400	7.368059	GGAGTAAAACATCAAGTCGGAAAATT	58.632	34.615	0.00	0.00	0.00	1.82
400	401	6.348213	CGGAGTAAAACATCAAGTCGGAAAAT	60.348	38.462	0.00	0.00	0.00	1.82
401	402	5.049954	CGGAGTAAAACATCAAGTCGGAAAA	60.050	40.000	0.00	0.00	0.00	2.29
402	403	4.449743	CGGAGTAAAACATCAAGTCGGAAA	59.550	41.667	0.00	0.00	0.00	3.13
403	404	3.991773	CGGAGTAAAACATCAAGTCGGAA	59.008	43.478	0.00	0.00	0.00	4.30
404	405	3.256383	TCGGAGTAAAACATCAAGTCGGA	59.744	43.478	0.00	0.00	0.00	4.55
405	406	3.581755	TCGGAGTAAAACATCAAGTCGG	58.418	45.455	0.00	0.00	0.00	4.79
406	407	5.050634	TGTTTCGGAGTAAAACATCAAGTCG	60.051	40.000	0.00	0.00	40.64	4.18
407	408	6.295039	TGTTTCGGAGTAAAACATCAAGTC	57.705	37.500	0.00	0.00	40.64	3.01
408	409	6.687081	TTGTTTCGGAGTAAAACATCAAGT	57.313	33.333	2.62	0.00	43.85	3.16
409	410	8.574196	AAATTGTTTCGGAGTAAAACATCAAG	57.426	30.769	2.62	0.00	43.85	3.02
410	411	8.812329	CAAAATTGTTTCGGAGTAAAACATCAA	58.188	29.630	2.62	0.00	43.85	2.57
411	412	7.436673	CCAAAATTGTTTCGGAGTAAAACATCA	59.563	33.333	2.62	0.00	43.85	3.07
412	413	7.650104	TCCAAAATTGTTTCGGAGTAAAACATC	59.350	33.333	2.62	0.00	43.85	3.06
413	414	7.493367	TCCAAAATTGTTTCGGAGTAAAACAT	58.507	30.769	2.62	0.00	43.85	2.71
414	415	6.864342	TCCAAAATTGTTTCGGAGTAAAACA	58.136	32.000	0.00	0.00	43.03	2.83
415	416	6.419710	CCTCCAAAATTGTTTCGGAGTAAAAC	59.580	38.462	8.22	0.00	38.76	2.43
416	417	6.461788	CCCTCCAAAATTGTTTCGGAGTAAAA	60.462	38.462	8.22	0.00	38.76	1.52
417	418	5.010213	CCCTCCAAAATTGTTTCGGAGTAAA	59.990	40.000	8.22	0.00	38.76	2.01
418	419	4.521256	CCCTCCAAAATTGTTTCGGAGTAA	59.479	41.667	8.22	0.00	38.76	2.24
419	420	4.076394	CCCTCCAAAATTGTTTCGGAGTA	58.924	43.478	8.22	0.00	38.76	2.59
420	421	2.890945	CCCTCCAAAATTGTTTCGGAGT	59.109	45.455	8.22	0.00	38.76	3.85
421	422	2.890945	ACCCTCCAAAATTGTTTCGGAG	59.109	45.455	3.04	3.04	39.39	4.63
422	423	2.625790	CACCCTCCAAAATTGTTTCGGA	59.374	45.455	0.00	0.00	0.00	4.55
423	424	2.866065	GCACCCTCCAAAATTGTTTCGG	60.866	50.000	0.00	0.00	0.00	4.30
424	425	2.035832	AGCACCCTCCAAAATTGTTTCG	59.964	45.455	0.00	0.00	0.00	3.46
425	426	3.069443	TCAGCACCCTCCAAAATTGTTTC	59.931	43.478	0.00	0.00	0.00	2.78
426	427	3.037549	TCAGCACCCTCCAAAATTGTTT	58.962	40.909	0.00	0.00	0.00	2.83
427	428	2.676748	TCAGCACCCTCCAAAATTGTT	58.323	42.857	0.00	0.00	0.00	2.83
428	429	2.380064	TCAGCACCCTCCAAAATTGT	57.620	45.000	0.00	0.00	0.00	2.71
429	430	3.749665	TTTCAGCACCCTCCAAAATTG	57.250	42.857	0.00	0.00	0.00	2.32
430	431	4.102996	ACATTTTCAGCACCCTCCAAAATT	59.897	37.500	0.00	0.00	0.00	1.82
431	432	3.647590	ACATTTTCAGCACCCTCCAAAAT	59.352	39.130	0.00	0.00	0.00	1.82
432	433	3.037549	ACATTTTCAGCACCCTCCAAAA	58.962	40.909	0.00	0.00	0.00	2.44
433	434	2.676748	ACATTTTCAGCACCCTCCAAA	58.323	42.857	0.00	0.00	0.00	3.28
434	435	2.380064	ACATTTTCAGCACCCTCCAA	57.620	45.000	0.00	0.00	0.00	3.53
435	436	2.238521	GAACATTTTCAGCACCCTCCA	58.761	47.619	0.00	0.00	0.00	3.86
436	437	1.546029	GGAACATTTTCAGCACCCTCC	59.454	52.381	0.00	0.00	32.80	4.30
437	438	1.200020	CGGAACATTTTCAGCACCCTC	59.800	52.381	0.00	0.00	32.80	4.30
438	439	1.247567	CGGAACATTTTCAGCACCCT	58.752	50.000	0.00	0.00	32.80	4.34
439	440	0.243636	CCGGAACATTTTCAGCACCC	59.756	55.000	0.00	0.00	32.80	4.61
440	441	0.243636	CCCGGAACATTTTCAGCACC	59.756	55.000	0.73	0.00	32.80	5.01
441	442	1.068541	GTCCCGGAACATTTTCAGCAC	60.069	52.381	0.73	0.00	32.80	4.40
442	443	1.243902	GTCCCGGAACATTTTCAGCA	58.756	50.000	0.73	0.00	32.80	4.41
443	444	0.526211	GGTCCCGGAACATTTTCAGC	59.474	55.000	0.73	0.00	32.80	4.26
444	445	2.200373	AGGTCCCGGAACATTTTCAG	57.800	50.000	0.73	0.00	32.80	3.02
445	446	2.510613	GAAGGTCCCGGAACATTTTCA	58.489	47.619	0.73	0.00	32.80	2.69
446	447	1.816835	GGAAGGTCCCGGAACATTTTC	59.183	52.381	0.73	0.00	0.00	2.29
447	448	1.884928	CGGAAGGTCCCGGAACATTTT	60.885	52.381	0.73	0.00	45.43	1.82
448	449	0.322187	CGGAAGGTCCCGGAACATTT	60.322	55.000	0.73	0.00	45.43	2.32
449	450	1.298667	CGGAAGGTCCCGGAACATT	59.701	57.895	0.73	0.00	45.43	2.71
450	451	2.987125	CGGAAGGTCCCGGAACAT	59.013	61.111	0.73	0.00	45.43	2.71
460	461	9.747874	TTTCTCTCTGAAACATTTCCGGAAGGT	62.748	40.741	17.97	16.56	44.93	3.50
461	462	7.462844	TTTCTCTCTGAAACATTTCCGGAAGG	61.463	42.308	17.97	15.89	45.53	3.46
462	463	4.569943	TCTCTCTGAAACATTTCCGGAAG	58.430	43.478	17.97	9.53	36.36	3.46
463	464	4.617253	TCTCTCTGAAACATTTCCGGAA	57.383	40.909	14.35	14.35	36.36	4.30
464	465	4.617253	TTCTCTCTGAAACATTTCCGGA	57.383	40.909	0.00	0.00	36.36	5.14
465	466	5.452777	GTTTTCTCTCTGAAACATTTCCGG	58.547	41.667	0.00	0.00	43.55	5.14
466	467	5.452777	GGTTTTCTCTCTGAAACATTTCCG	58.547	41.667	2.00	0.00	43.55	4.30
467	468	5.238650	TCGGTTTTCTCTCTGAAACATTTCC	59.761	40.000	2.00	0.00	43.55	3.13
468	469	6.300354	TCGGTTTTCTCTCTGAAACATTTC	57.700	37.500	0.00	0.00	43.55	2.17
469	470	5.278022	GCTCGGTTTTCTCTCTGAAACATTT	60.278	40.000	0.00	0.00	43.55	2.32
470	471	4.214332	GCTCGGTTTTCTCTCTGAAACATT	59.786	41.667	0.00	0.00	43.55	2.71
471	472	3.748568	GCTCGGTTTTCTCTCTGAAACAT	59.251	43.478	0.00	0.00	43.55	2.71
472	473	3.131396	GCTCGGTTTTCTCTCTGAAACA	58.869	45.455	0.00	0.00	43.55	2.83
473	474	2.480802	GGCTCGGTTTTCTCTCTGAAAC	59.519	50.000	0.00	0.00	43.55	2.78
474	475	2.767505	GGCTCGGTTTTCTCTCTGAAA	58.232	47.619	0.00	0.00	42.33	2.69
475	476	1.336887	CGGCTCGGTTTTCTCTCTGAA	60.337	52.381	0.00	0.00	0.00	3.02
476	477	0.243907	CGGCTCGGTTTTCTCTCTGA	59.756	55.000	0.00	0.00	0.00	3.27
477	478	0.737715	CCGGCTCGGTTTTCTCTCTG	60.738	60.000	5.56	0.00	42.73	3.35
478	479	1.592223	CCGGCTCGGTTTTCTCTCT	59.408	57.895	5.56	0.00	42.73	3.10
479	480	4.187056	CCGGCTCGGTTTTCTCTC	57.813	61.111	5.56	0.00	42.73	3.20
490	491	2.748058	TTTTCAGCACCCTCCGGCTC	62.748	60.000	0.00	0.00	38.56	4.70
491	492	2.142292	ATTTTCAGCACCCTCCGGCT	62.142	55.000	0.00	0.00	42.06	5.52
492	493	1.678970	ATTTTCAGCACCCTCCGGC	60.679	57.895	0.00	0.00	0.00	6.13
493	494	0.609131	ACATTTTCAGCACCCTCCGG	60.609	55.000	0.00	0.00	0.00	5.14
494	495	1.200020	GAACATTTTCAGCACCCTCCG	59.800	52.381	0.00	0.00	0.00	4.63
495	496	1.546029	GGAACATTTTCAGCACCCTCC	59.454	52.381	0.00	0.00	32.80	4.30
496	497	1.200020	CGGAACATTTTCAGCACCCTC	59.800	52.381	0.00	0.00	32.80	4.30
497	498	1.247567	CGGAACATTTTCAGCACCCT	58.752	50.000	0.00	0.00	32.80	4.34
498	499	0.243636	CCGGAACATTTTCAGCACCC	59.756	55.000	0.00	0.00	32.80	4.61
499	500	0.388520	GCCGGAACATTTTCAGCACC	60.389	55.000	5.05	0.00	34.31	5.01
500	501	0.598065	AGCCGGAACATTTTCAGCAC	59.402	50.000	5.05	0.00	35.82	4.40
501	502	1.000385	CAAGCCGGAACATTTTCAGCA	60.000	47.619	5.05	0.00	35.82	4.41
502	503	1.269448	TCAAGCCGGAACATTTTCAGC	59.731	47.619	5.05	0.00	34.34	4.26
503	504	3.057315	ACATCAAGCCGGAACATTTTCAG	60.057	43.478	5.05	0.00	32.80	3.02
504	505	2.890311	ACATCAAGCCGGAACATTTTCA	59.110	40.909	5.05	0.00	32.80	2.69
505	506	3.575965	ACATCAAGCCGGAACATTTTC	57.424	42.857	5.05	0.00	0.00	2.29
506	507	4.335400	AAACATCAAGCCGGAACATTTT	57.665	36.364	5.05	0.00	0.00	1.82
507	508	4.335400	AAAACATCAAGCCGGAACATTT	57.665	36.364	5.05	0.00	0.00	2.32
508	509	4.522789	AGTAAAACATCAAGCCGGAACATT	59.477	37.500	5.05	0.00	0.00	2.71
509	510	4.079253	AGTAAAACATCAAGCCGGAACAT	58.921	39.130	5.05	0.00	0.00	2.71
510	511	3.482436	AGTAAAACATCAAGCCGGAACA	58.518	40.909	5.05	0.00	0.00	3.18
511	512	4.473199	GAAGTAAAACATCAAGCCGGAAC	58.527	43.478	5.05	0.00	0.00	3.62
512	513	3.187637	CGAAGTAAAACATCAAGCCGGAA	59.812	43.478	5.05	0.00	0.00	4.30
513	514	2.739913	CGAAGTAAAACATCAAGCCGGA	59.260	45.455	5.05	0.00	0.00	5.14
514	515	2.739913	TCGAAGTAAAACATCAAGCCGG	59.260	45.455	0.00	0.00	0.00	6.13
515	516	4.398549	TTCGAAGTAAAACATCAAGCCG	57.601	40.909	0.00	0.00	0.00	5.52
516	517	4.617223	GCTTTCGAAGTAAAACATCAAGCC	59.383	41.667	0.00	0.00	26.27	4.35
517	518	5.452777	AGCTTTCGAAGTAAAACATCAAGC	58.547	37.500	0.00	0.00	30.12	4.01
518	519	7.132213	TCAAGCTTTCGAAGTAAAACATCAAG	58.868	34.615	0.00	0.00	0.00	3.02
519	520	7.022055	TCAAGCTTTCGAAGTAAAACATCAA	57.978	32.000	0.00	0.00	0.00	2.57
520	521	6.612247	TCAAGCTTTCGAAGTAAAACATCA	57.388	33.333	0.00	0.00	0.00	3.07
521	522	9.607285	TTTATCAAGCTTTCGAAGTAAAACATC	57.393	29.630	0.00	0.00	0.00	3.06
522	523	9.394477	GTTTATCAAGCTTTCGAAGTAAAACAT	57.606	29.630	0.00	0.00	0.00	2.71
523	524	8.399425	TGTTTATCAAGCTTTCGAAGTAAAACA	58.601	29.630	0.00	6.21	31.62	2.83
524	525	8.776680	TGTTTATCAAGCTTTCGAAGTAAAAC	57.223	30.769	0.00	3.95	0.00	2.43
525	526	9.959749	AATGTTTATCAAGCTTTCGAAGTAAAA	57.040	25.926	0.00	0.00	0.00	1.52
526	527	9.959749	AAATGTTTATCAAGCTTTCGAAGTAAA	57.040	25.926	0.00	0.00	0.00	2.01
527	528	9.959749	AAAATGTTTATCAAGCTTTCGAAGTAA	57.040	25.926	0.00	0.00	0.00	2.24
529	530	9.959749	TTAAAATGTTTATCAAGCTTTCGAAGT	57.040	25.926	0.00	0.00	0.00	3.01
532	533	9.737427	TGTTTAAAATGTTTATCAAGCTTTCGA	57.263	25.926	0.00	0.00	0.00	3.71
588	589	6.656693	AGAGAAAATGTTTCTCCTGTGTATGG	59.343	38.462	21.43	0.00	44.46	2.74
750	765	9.465985	TGTTTCTTTTTCACGTTCTTAGTTTTT	57.534	25.926	0.00	0.00	0.00	1.94
825	840	1.444895	GCCCACAAGCAAGCATTCG	60.445	57.895	0.00	0.00	0.00	3.34
835	850	1.782044	CGACCAAAAATGCCCACAAG	58.218	50.000	0.00	0.00	0.00	3.16
836	851	0.249657	GCGACCAAAAATGCCCACAA	60.250	50.000	0.00	0.00	0.00	3.33
1449	1464	1.815003	CACGATCTTGCCGCATCCA	60.815	57.895	0.00	0.00	0.00	3.41
1473	1488	3.268032	CCCAGCCTCCCAGGGTTT	61.268	66.667	5.01	0.00	45.25	3.27
1513	1528	2.439156	AGCTTGCTCATTCGCCCC	60.439	61.111	0.00	0.00	0.00	5.80
1662	1677	7.701078	TCTTTCGCACTGACAGAATAATAGTAC	59.299	37.037	10.08	0.00	30.54	2.73
1663	1678	7.768240	TCTTTCGCACTGACAGAATAATAGTA	58.232	34.615	10.08	0.00	30.54	1.82
1679	1694	4.568760	CCTAGAAATTCTCCTCTTTCGCAC	59.431	45.833	0.00	0.00	36.66	5.34
1858	1873	4.713824	AGTAGCGCATAACTACTCAACA	57.286	40.909	11.47	0.00	45.65	3.33
1949	1964	2.093288	TCTTCCTGCAGCTAATCACCAG	60.093	50.000	8.66	0.00	0.00	4.00
2013	3345	2.623889	GTCTATGTAGAGGGCGACATGT	59.376	50.000	0.00	0.00	40.05	3.21
2269	3601	2.125512	CCGCCGCTGAACTTAGCT	60.126	61.111	0.00	0.00	41.51	3.32
2459	3800	2.253452	GCAGGACTTTGCGCTGTG	59.747	61.111	9.73	0.16	33.90	3.66
2499	3841	3.241067	AGGATGTTGTCATTGCAATGC	57.759	42.857	30.57	24.77	36.36	3.56
2650	3992	2.300152	ACTCTTCATTGAGGAAGACGCA	59.700	45.455	4.16	0.00	46.16	5.24
2698	4040	0.602638	GGCACATCAACGTCACCAGA	60.603	55.000	0.00	0.00	0.00	3.86
2727	4069	2.174969	GTTTGACACACCGGCGTCA	61.175	57.895	15.76	15.76	40.30	4.35
2762	4104	2.135933	GTGGTCCAACGAAGACAGAAG	58.864	52.381	0.00	0.00	35.89	2.85
2763	4105	1.483004	TGTGGTCCAACGAAGACAGAA	59.517	47.619	0.00	0.00	35.89	3.02
2775	4117	2.549134	CCGTACTGTTTCATGTGGTCCA	60.549	50.000	0.00	0.00	0.00	4.02
2794	4136	1.378382	TTCACCATGCCCATCACCG	60.378	57.895	0.00	0.00	0.00	4.94
2806	4148	2.204461	TCCTCGCCGAACTTCACCA	61.204	57.895	0.00	0.00	0.00	4.17
2828	4170	1.548719	TGTCTACATTCCTCCACCACG	59.451	52.381	0.00	0.00	0.00	4.94
2900	4242	2.752354	CAGGCGGGAAATTCAATACACA	59.248	45.455	0.00	0.00	0.00	3.72
2918	4260	0.247460	TGACGATGTTGCTCTCCAGG	59.753	55.000	0.00	0.00	0.00	4.45
2997	4347	1.298859	CGAGGAGGTTCTTTTGCGGG	61.299	60.000	0.00	0.00	0.00	6.13
3088	4438	1.379977	CGGGTAGGTCTGCTCCTCA	60.380	63.158	0.00	0.00	38.86	3.86
3152	4502	1.035932	GCGTCTCCTAGGGTGTGCTA	61.036	60.000	9.46	0.00	0.00	3.49
3162	4512	1.103803	GACATCTGGTGCGTCTCCTA	58.896	55.000	0.00	0.00	0.00	2.94
3234	4584	6.763135	TGTTGGAGATGCTCTAATAACATGAC	59.237	38.462	0.00	0.00	33.81	3.06
3235	4585	6.888105	TGTTGGAGATGCTCTAATAACATGA	58.112	36.000	0.00	0.00	33.81	3.07
3236	4586	6.293298	GCTGTTGGAGATGCTCTAATAACATG	60.293	42.308	0.00	0.00	33.81	3.21
3237	4587	5.762218	GCTGTTGGAGATGCTCTAATAACAT	59.238	40.000	0.00	0.00	33.81	2.71
3238	4588	5.118990	GCTGTTGGAGATGCTCTAATAACA	58.881	41.667	0.00	0.00	33.81	2.41
3239	4589	4.513318	GGCTGTTGGAGATGCTCTAATAAC	59.487	45.833	0.00	0.00	33.81	1.89
3240	4590	4.708177	GGCTGTTGGAGATGCTCTAATAA	58.292	43.478	0.00	0.00	33.81	1.40
3241	4591	3.243873	CGGCTGTTGGAGATGCTCTAATA	60.244	47.826	0.00	0.00	33.81	0.98
3242	4592	2.484417	CGGCTGTTGGAGATGCTCTAAT	60.484	50.000	0.00	0.00	33.81	1.73
3272	4622	0.388907	ACTAGTTTTTAGCGCGCGGA	60.389	50.000	33.06	15.73	0.00	5.54
3275	4625	1.642360	GCAAACTAGTTTTTAGCGCGC	59.358	47.619	26.66	26.66	0.00	6.86
3424	4776	7.854337	ACAAATATTTAGGAACGAAGGGAGTA	58.146	34.615	0.00	0.00	0.00	2.59
3425	4777	6.718294	ACAAATATTTAGGAACGAAGGGAGT	58.282	36.000	0.00	0.00	0.00	3.85
3426	4778	7.048512	AGACAAATATTTAGGAACGAAGGGAG	58.951	38.462	0.00	0.00	0.00	4.30
3427	4779	6.954232	AGACAAATATTTAGGAACGAAGGGA	58.046	36.000	0.00	0.00	0.00	4.20
3428	4780	7.767198	TGTAGACAAATATTTAGGAACGAAGGG	59.233	37.037	0.00	0.00	0.00	3.95
3429	4781	8.601476	GTGTAGACAAATATTTAGGAACGAAGG	58.399	37.037	0.00	0.00	0.00	3.46
3430	4782	9.367444	AGTGTAGACAAATATTTAGGAACGAAG	57.633	33.333	0.00	0.00	0.00	3.79
3431	4783	9.362539	GAGTGTAGACAAATATTTAGGAACGAA	57.637	33.333	0.00	0.00	0.00	3.85
3432	4784	8.746530	AGAGTGTAGACAAATATTTAGGAACGA	58.253	33.333	0.00	0.00	0.00	3.85
3433	4785	8.928270	AGAGTGTAGACAAATATTTAGGAACG	57.072	34.615	0.00	0.00	0.00	3.95
3462	4814	9.696572	ACCACATACGGATGTATATAGACTTAT	57.303	33.333	14.23	0.00	44.82	1.73
3464	4816	9.175312	CTACCACATACGGATGTATATAGACTT	57.825	37.037	14.23	0.00	44.82	3.01
3465	4817	8.327271	ACTACCACATACGGATGTATATAGACT	58.673	37.037	22.62	7.05	44.82	3.24
3466	4818	8.503458	ACTACCACATACGGATGTATATAGAC	57.497	38.462	22.62	0.00	44.82	2.59
3467	4819	7.772292	GGACTACCACATACGGATGTATATAGA	59.228	40.741	22.62	5.04	44.82	1.98
3468	4820	7.555195	TGGACTACCACATACGGATGTATATAG	59.445	40.741	14.23	16.35	44.82	1.31
3469	4821	7.404481	TGGACTACCACATACGGATGTATATA	58.596	38.462	14.23	5.36	44.82	0.86
3470	4822	6.250711	TGGACTACCACATACGGATGTATAT	58.749	40.000	14.23	4.37	44.82	0.86
3471	4823	5.633117	TGGACTACCACATACGGATGTATA	58.367	41.667	14.23	8.27	44.82	1.47
3472	4824	4.476297	TGGACTACCACATACGGATGTAT	58.524	43.478	14.23	7.46	44.82	2.29
3473	4825	3.900971	TGGACTACCACATACGGATGTA	58.099	45.455	14.23	0.00	44.82	2.29
3489	4841	9.354673	TGTCTTTTTAGAGATTTCAAATGGACT	57.645	29.630	0.00	0.00	0.00	3.85
3490	4842	9.965824	TTGTCTTTTTAGAGATTTCAAATGGAC	57.034	29.630	0.00	0.00	0.00	4.02
3507	4859	8.520351	CCTCCGTTCCTAAATATTTGTCTTTTT	58.480	33.333	11.05	0.00	0.00	1.94
3508	4860	7.122204	CCCTCCGTTCCTAAATATTTGTCTTTT	59.878	37.037	11.05	0.00	0.00	2.27
3509	4861	6.602009	CCCTCCGTTCCTAAATATTTGTCTTT	59.398	38.462	11.05	0.00	0.00	2.52
3510	4862	6.069847	TCCCTCCGTTCCTAAATATTTGTCTT	60.070	38.462	11.05	0.00	0.00	3.01
3511	4863	5.427481	TCCCTCCGTTCCTAAATATTTGTCT	59.573	40.000	11.05	0.00	0.00	3.41
3512	4864	5.677567	TCCCTCCGTTCCTAAATATTTGTC	58.322	41.667	11.05	0.00	0.00	3.18
3513	4865	5.191124	ACTCCCTCCGTTCCTAAATATTTGT	59.809	40.000	11.05	0.00	0.00	2.83
3514	4866	5.681639	ACTCCCTCCGTTCCTAAATATTTG	58.318	41.667	11.05	1.40	0.00	2.32
3515	4867	5.970501	ACTCCCTCCGTTCCTAAATATTT	57.029	39.130	5.89	5.89	0.00	1.40
3516	4868	5.901276	TGTACTCCCTCCGTTCCTAAATATT	59.099	40.000	0.00	0.00	0.00	1.28
3517	4869	5.461327	TGTACTCCCTCCGTTCCTAAATAT	58.539	41.667	0.00	0.00	0.00	1.28
3518	4870	4.870636	TGTACTCCCTCCGTTCCTAAATA	58.129	43.478	0.00	0.00	0.00	1.40
3519	4871	3.716431	TGTACTCCCTCCGTTCCTAAAT	58.284	45.455	0.00	0.00	0.00	1.40
3520	4872	3.173953	TGTACTCCCTCCGTTCCTAAA	57.826	47.619	0.00	0.00	0.00	1.85
3521	4873	2.905415	TGTACTCCCTCCGTTCCTAA	57.095	50.000	0.00	0.00	0.00	2.69
3522	4874	3.393426	AATGTACTCCCTCCGTTCCTA	57.607	47.619	0.00	0.00	0.00	2.94
3523	4875	2.249309	AATGTACTCCCTCCGTTCCT	57.751	50.000	0.00	0.00	0.00	3.36
3524	4876	2.235402	TGAAATGTACTCCCTCCGTTCC	59.765	50.000	0.00	0.00	0.00	3.62
3525	4877	3.604875	TGAAATGTACTCCCTCCGTTC	57.395	47.619	0.00	0.00	0.00	3.95
3526	4878	4.360951	TTTGAAATGTACTCCCTCCGTT	57.639	40.909	0.00	0.00	0.00	4.44
3527	4879	4.569719	ATTTGAAATGTACTCCCTCCGT	57.430	40.909	0.00	0.00	0.00	4.69
3528	4880	5.914033	TCTATTTGAAATGTACTCCCTCCG	58.086	41.667	0.00	0.00	0.00	4.63
3529	4881	6.261158	GCTTCTATTTGAAATGTACTCCCTCC	59.739	42.308	0.00	0.00	33.79	4.30
3530	4882	6.823689	TGCTTCTATTTGAAATGTACTCCCTC	59.176	38.462	0.00	0.00	33.79	4.30
3531	4883	6.721318	TGCTTCTATTTGAAATGTACTCCCT	58.279	36.000	0.00	0.00	33.79	4.20
3532	4884	7.391148	TTGCTTCTATTTGAAATGTACTCCC	57.609	36.000	0.00	0.00	33.79	4.30
3533	4885	9.691362	TTTTTGCTTCTATTTGAAATGTACTCC	57.309	29.630	0.00	0.00	33.79	3.85
3815	5308	2.943978	CGACGGAGGGCTGAAAGGT	61.944	63.158	0.00	0.00	0.00	3.50
4042	5543	5.988310	ATCTTGATTTCCACAATGCTCAA	57.012	34.783	0.00	0.00	0.00	3.02
4473	5989	3.973206	TTGGCGAGGAGTATTTGAGAA	57.027	42.857	0.00	0.00	0.00	2.87
5334	7026	4.067016	CCGTTTTAGCACGCGCGT	62.067	61.111	32.73	32.73	45.49	6.01
5443	7137	1.794222	GGGCGAAACCGATCAACAG	59.206	57.895	0.00	0.00	40.62	3.16
5547	7242	2.171237	ACCGTATTAACCAGTTAGGGCC	59.829	50.000	0.00	0.00	43.89	5.80
5565	7260	1.293963	TGTCGTGTCGAGGTCTACCG	61.294	60.000	0.00	0.00	42.08	4.02
5582	7277	1.133482	CAGTTGGGGAGAAAGGGTTGT	60.133	52.381	0.00	0.00	0.00	3.32
5728	7423	2.038269	TCCGGCAGGATTTTGTCGC	61.038	57.895	0.00	0.00	44.34	5.19
5813	7508	1.877443	CGGTTTTCCTCAATGGACGTT	59.123	47.619	0.00	0.00	46.14	3.99
5944	7639	2.506231	TGACCTTGTACACCCACTTCAA	59.494	45.455	0.00	0.00	0.00	2.69
6026	7723	4.947147	GTCCACCCGCTGGCACAA	62.947	66.667	0.00	0.00	40.39	3.33
6035	7732	0.253044	ACTTCATCATGGTCCACCCG	59.747	55.000	0.00	0.00	35.15	5.28
6087	7784	2.807840	TTGCCAGAGCTAGCAAAAGCG	61.808	52.381	18.83	0.00	45.51	4.68
6149	7846	1.594331	AGTTTGTCGTTGAGGAAGGC	58.406	50.000	0.00	0.00	0.00	4.35
6186	7884	1.132262	GGTGTATCCCAACATTGTGCG	59.868	52.381	0.00	0.00	0.00	5.34
6195	7893	3.244946	TGTCCGAAAATGGTGTATCCCAA	60.245	43.478	0.00	0.00	38.20	4.12
6196	7894	2.306219	TGTCCGAAAATGGTGTATCCCA	59.694	45.455	0.00	0.00	39.27	4.37
6204	7902	2.637872	TCCTCTCTTGTCCGAAAATGGT	59.362	45.455	0.00	0.00	0.00	3.55
6254	7952	1.280746	CGTGGTGCTTGCTTCAGTG	59.719	57.895	0.00	0.00	0.00	3.66
6283	7981	1.790623	ACGGACACGATCGAACTTTTG	59.209	47.619	24.34	10.95	44.60	2.44
6407	8106	1.226888	CTCGATTTCCCCCGACGTC	60.227	63.158	5.18	5.18	0.00	4.34
6465	8188	2.004808	TAGCACACCTCGATCCGCAG	62.005	60.000	0.00	0.00	0.00	5.18
6507	8616	0.247460	CCTCCATGAAGCACGAGACA	59.753	55.000	0.00	0.00	0.00	3.41
6544	8653	1.580845	GCACTCTTCACCGCAGCAAT	61.581	55.000	0.00	0.00	0.00	3.56
6610	8719	2.711899	TAGTCATCCCCGCTCCCCT	61.712	63.158	0.00	0.00	0.00	4.79
6693	10333	6.403866	AACATTGTTGGCATAGAAGAACAA	57.596	33.333	0.15	0.00	41.27	2.83
6831	10479	0.037447	GCTGGCTCCTCCTTCAGTTT	59.963	55.000	0.00	0.00	35.26	2.66
6856	10504	7.492669	CGGATTAGTTGTCAATGTAGAGTTGAT	59.507	37.037	0.00	0.00	37.84	2.57
6945	10603	0.467384	CATGGTCTCTCCGCATTCCT	59.533	55.000	0.00	0.00	39.52	3.36
7044	10703	1.442769	GATCTTTGCACGAAGCTCCA	58.557	50.000	6.22	0.00	45.94	3.86
7073	10732	4.605640	AAGCATGTGCCATTGTAACTTT	57.394	36.364	0.57	0.00	43.38	2.66
7123	10782	3.427503	GGAAAATAATGTGACAGGCCACG	60.428	47.826	5.01	0.00	39.80	4.94
7242	10901	0.678950	TCGTGCCATCTCACAACTCA	59.321	50.000	0.00	0.00	36.80	3.41
7370	11030	5.304686	ACATACTCCAACAGAAAAGACCA	57.695	39.130	0.00	0.00	0.00	4.02
7963	11661	1.065410	TTTGCCCCCTGACTGGAGAA	61.065	55.000	0.00	0.00	38.35	2.87
7972	11670	1.002315	CAAATTCCAGTTTGCCCCCTG	59.998	52.381	0.00	0.00	32.90	4.45
8072	11770	6.152154	AGTTTACTTGCACAACAAAGGTTACT	59.848	34.615	0.00	0.00	37.96	2.24
8075	11773	5.400066	AGTTTACTTGCACAACAAAGGTT	57.600	34.783	0.00	0.00	37.96	3.50
8133	11831	9.709495	AGATATAAGATGTTTTTGCTGCAAAAA	57.291	25.926	36.16	36.16	46.57	1.94
8226	11931	4.530875	AGGCACTCTCCAGAAATAATTGG	58.469	43.478	0.00	0.00	35.74	3.16
8227	11932	8.944029	CATATAGGCACTCTCCAGAAATAATTG	58.056	37.037	0.00	0.00	41.75	2.32
8228	11933	8.664079	ACATATAGGCACTCTCCAGAAATAATT	58.336	33.333	0.00	0.00	41.75	1.40
8631	12612	7.837689	AGTGTTTTTCTTTTAGTCCTACCCTTT	59.162	33.333	0.00	0.00	0.00	3.11
8700	12681	9.609346	TTCCTAATTTCGTAGAAAGGAAATAGG	57.391	33.333	10.36	11.47	45.05	2.57
8740	12721	6.546034	ACTTCACTGTAACATAAAAGCAAGGT	59.454	34.615	0.00	0.00	0.00	3.50
8877	12858	1.053811	GCGACGACAACTCAACTCTC	58.946	55.000	0.00	0.00	0.00	3.20
9160	13163	4.134379	AGCACAGGATATGTTCTCAGTG	57.866	45.455	0.00	0.00	41.41	3.66
9170	13173	0.467474	TCGTCGGGAGCACAGGATAT	60.467	55.000	0.00	0.00	0.00	1.63
9238	13245	0.327000	CCCCTCATCCTGTCCCTCTT	60.327	60.000	0.00	0.00	0.00	2.85
9310	13318	2.021457	GGTCCGTATTGTTGGATTGGG	58.979	52.381	0.00	0.00	36.48	4.12
9313	13321	4.295141	TCAAGGTCCGTATTGTTGGATT	57.705	40.909	0.00	0.00	36.48	3.01
9323	13331	4.851843	TCATCTAGACTTCAAGGTCCGTA	58.148	43.478	0.00	0.00	36.95	4.02
9347	13355	1.155042	GAAGACAGTGCAAGGCAGAG	58.845	55.000	0.00	0.00	40.08	3.35
9352	13360	3.951775	AGTAGAGAAGACAGTGCAAGG	57.048	47.619	0.00	0.00	0.00	3.61
9354	13362	4.382040	GGCATAGTAGAGAAGACAGTGCAA	60.382	45.833	0.00	0.00	33.60	4.08
9358	13366	4.605183	ACAGGCATAGTAGAGAAGACAGT	58.395	43.478	0.00	0.00	0.00	3.55
9414	13427	3.991773	ACAATGAACAATCATGCAACAGC	59.008	39.130	0.00	0.00	45.60	4.40
9508	14377	8.964476	TCTTTAGTTCAGTTTCAGAACAAGAT	57.036	30.769	8.54	0.00	45.93	2.40
9510	14379	9.050601	AGATCTTTAGTTCAGTTTCAGAACAAG	57.949	33.333	8.54	4.83	45.93	3.16
9515	14384	8.183104	TCAGAGATCTTTAGTTCAGTTTCAGA	57.817	34.615	0.00	0.00	0.00	3.27
9553	14422	3.581024	TGTTCTTGCATGGAAGCATTC	57.419	42.857	21.14	11.45	45.19	2.67
9554	14423	3.512329	TGATGTTCTTGCATGGAAGCATT	59.488	39.130	21.14	6.65	45.19	3.56
9618	14488	2.684943	TCAGAGGGGTGTCTGTTGTAA	58.315	47.619	1.03	0.00	43.89	2.41
9626	14496	2.859165	TCATTGTTCAGAGGGGTGTC	57.141	50.000	0.00	0.00	0.00	3.67
9627	14497	3.593442	TTTCATTGTTCAGAGGGGTGT	57.407	42.857	0.00	0.00	0.00	4.16
9666	14536	1.967066	CCATGTAAACACTTGCCCCAA	59.033	47.619	0.00	0.00	0.00	4.12
9668	14538	1.272212	CACCATGTAAACACTTGCCCC	59.728	52.381	0.00	0.00	0.00	5.80
9669	14539	1.336795	GCACCATGTAAACACTTGCCC	60.337	52.381	0.00	0.00	0.00	5.36
9670	14540	1.336795	GGCACCATGTAAACACTTGCC	60.337	52.381	12.96	12.96	39.57	4.52
9671	14541	1.339610	TGGCACCATGTAAACACTTGC	59.660	47.619	0.00	4.58	0.00	4.01
9672	14542	3.724508	TTGGCACCATGTAAACACTTG	57.275	42.857	0.00	0.00	0.00	3.16
9673	14543	4.744795	TTTTGGCACCATGTAAACACTT	57.255	36.364	0.00	0.00	0.00	3.16
9674	14544	4.744795	TTTTTGGCACCATGTAAACACT	57.255	36.364	0.00	0.00	0.00	3.55
9675	14545	4.450757	GGATTTTTGGCACCATGTAAACAC	59.549	41.667	0.00	0.00	0.00	3.32
9744	14649	5.187772	AGTTGTTCATAGGAGCAGTGATACA	59.812	40.000	0.00	0.00	35.58	2.29
9754	14659	6.108687	TGTTCATAGCAGTTGTTCATAGGAG	58.891	40.000	0.00	0.00	0.00	3.69
9755	14660	6.048732	TGTTCATAGCAGTTGTTCATAGGA	57.951	37.500	0.00	0.00	0.00	2.94
9756	14661	6.741992	TTGTTCATAGCAGTTGTTCATAGG	57.258	37.500	0.00	0.00	0.00	2.57
9757	14662	7.121911	CGATTGTTCATAGCAGTTGTTCATAG	58.878	38.462	0.00	0.00	0.00	2.23
9758	14663	6.593770	ACGATTGTTCATAGCAGTTGTTCATA	59.406	34.615	0.00	0.00	0.00	2.15
9759	14664	5.412594	ACGATTGTTCATAGCAGTTGTTCAT	59.587	36.000	0.00	0.00	0.00	2.57
9760	14665	4.754618	ACGATTGTTCATAGCAGTTGTTCA	59.245	37.500	0.00	0.00	0.00	3.18
9761	14666	5.283060	ACGATTGTTCATAGCAGTTGTTC	57.717	39.130	0.00	0.00	0.00	3.18
9762	14667	5.689383	AACGATTGTTCATAGCAGTTGTT	57.311	34.783	0.00	0.00	30.83	2.83
9763	14668	6.985188	ATAACGATTGTTCATAGCAGTTGT	57.015	33.333	0.28	0.00	39.54	3.32
9764	14669	6.688385	CCAATAACGATTGTTCATAGCAGTTG	59.312	38.462	0.28	0.00	40.87	3.16
9765	14670	6.183360	CCCAATAACGATTGTTCATAGCAGTT	60.183	38.462	0.28	0.00	40.87	3.16
9766	14671	5.296780	CCCAATAACGATTGTTCATAGCAGT	59.703	40.000	0.28	0.00	40.87	4.40
9774	14679	6.751888	CCTTTGATTCCCAATAACGATTGTTC	59.248	38.462	0.28	0.00	40.87	3.18
9779	14684	5.536161	CCATCCTTTGATTCCCAATAACGAT	59.464	40.000	0.00	0.00	34.23	3.73

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.