Multiple sequence alignment - TraesCS7A01G270800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G270800 chr7A 100.000 8033 0 0 1 8033 281380508 281372476 0.000000e+00 14835.0
1 TraesCS7A01G270800 chr7A 82.880 1139 142 27 2912 4012 24694503 24693380 0.000000e+00 974.0
2 TraesCS7A01G270800 chr7A 91.667 312 26 0 4208 4519 693011659 693011348 4.450000e-117 433.0
3 TraesCS7A01G270800 chr7A 91.503 306 26 0 4214 4519 692980555 692980250 9.640000e-114 422.0
4 TraesCS7A01G270800 chr7A 89.630 270 24 4 2449 2717 693107206 693106940 2.780000e-89 340.0
5 TraesCS7A01G270800 chr7A 82.759 377 43 10 2449 2820 693012004 693011645 4.680000e-82 316.0
6 TraesCS7A01G270800 chr7A 95.283 106 5 0 4054 4159 1854038 1854143 1.390000e-37 169.0
7 TraesCS7A01G270800 chr7A 88.462 52 4 1 2134 2185 47923281 47923330 2.420000e-05 62.1
8 TraesCS7A01G270800 chr7D 95.098 2958 94 12 4208 7124 259293332 259290385 0.000000e+00 4612.0
9 TraesCS7A01G270800 chr7D 95.464 2844 93 12 1 2820 259296149 259293318 0.000000e+00 4505.0
10 TraesCS7A01G270800 chr7D 87.943 1128 116 9 2830 3954 56296359 56297469 0.000000e+00 1312.0
11 TraesCS7A01G270800 chr7D 87.043 903 98 13 2819 3718 53729673 53728787 0.000000e+00 1002.0
12 TraesCS7A01G270800 chr7D 89.219 269 27 2 2449 2717 601276900 601277166 1.290000e-87 335.0
13 TraesCS7A01G270800 chr7D 89.219 269 27 2 2449 2717 601321289 601321023 1.290000e-87 335.0
14 TraesCS7A01G270800 chr7D 85.893 319 26 4 4208 4517 601277227 601277535 1.010000e-83 322.0
15 TraesCS7A01G270800 chr7D 85.893 319 26 4 4208 4517 601320962 601320654 1.010000e-83 322.0
16 TraesCS7A01G270800 chr7D 96.774 93 3 0 7198 7290 259285364 259285272 1.080000e-33 156.0
17 TraesCS7A01G270800 chr7B 96.385 1715 62 0 4208 5922 238530118 238528404 0.000000e+00 2824.0
18 TraesCS7A01G270800 chr7B 90.604 1341 75 20 6059 7394 238528126 238526832 0.000000e+00 1731.0
19 TraesCS7A01G270800 chr7B 94.231 1092 42 9 1638 2727 238531346 238530274 0.000000e+00 1648.0
20 TraesCS7A01G270800 chr7B 95.256 801 21 3 848 1648 238532145 238531362 0.000000e+00 1253.0
21 TraesCS7A01G270800 chr7B 96.721 244 8 0 5814 6057 238528452 238528209 2.700000e-109 407.0
22 TraesCS7A01G270800 chr7B 89.720 321 24 2 4208 4519 680339024 680338704 1.260000e-107 401.0
23 TraesCS7A01G270800 chr7B 90.411 292 16 5 202 493 238533055 238532776 2.740000e-99 374.0
24 TraesCS7A01G270800 chr7B 94.762 210 11 0 2 211 238533662 238533453 2.160000e-85 327.0
25 TraesCS7A01G270800 chr7B 88.417 259 29 1 2459 2717 680339341 680339084 2.180000e-80 311.0
26 TraesCS7A01G270800 chr7B 96.667 180 6 0 527 706 238532774 238532595 4.710000e-77 300.0
27 TraesCS7A01G270800 chr7B 84.404 109 3 2 2726 2820 238530212 238530104 2.390000e-15 95.3
28 TraesCS7A01G270800 chr6D 85.629 1176 122 24 2820 3960 449255806 449254643 0.000000e+00 1192.0
29 TraesCS7A01G270800 chr6D 87.309 914 99 11 2815 3723 84306959 84306058 0.000000e+00 1029.0
30 TraesCS7A01G270800 chr6D 94.479 634 31 2 7400 8030 14616166 14615534 0.000000e+00 974.0
31 TraesCS7A01G270800 chr6D 94.349 637 31 3 7396 8029 464466003 464465369 0.000000e+00 972.0
32 TraesCS7A01G270800 chr6D 93.168 644 40 2 7390 8030 87386296 87385654 0.000000e+00 942.0
33 TraesCS7A01G270800 chr6D 86.117 461 50 9 2819 3276 17236989 17237438 1.210000e-132 484.0
34 TraesCS7A01G270800 chr6D 84.651 215 25 3 2830 3044 425833778 425833572 2.940000e-49 207.0
35 TraesCS7A01G270800 chr6D 86.667 60 7 1 6180 6239 33901460 33901518 1.870000e-06 65.8
36 TraesCS7A01G270800 chr5B 86.173 1121 131 12 2817 3934 611993771 611994870 0.000000e+00 1190.0
37 TraesCS7A01G270800 chr5B 94.382 623 32 1 7411 8030 680927864 680927242 0.000000e+00 953.0
38 TraesCS7A01G270800 chr5B 90.476 63 4 1 6177 6239 415995314 415995374 1.860000e-11 82.4
39 TraesCS7A01G270800 chr4B 88.382 964 96 10 2830 3790 361968030 361967080 0.000000e+00 1146.0
40 TraesCS7A01G270800 chr1D 84.901 1159 112 33 2826 3959 483693917 483695037 0.000000e+00 1112.0
41 TraesCS7A01G270800 chr1D 82.548 1146 160 25 2819 3958 10536567 10537678 0.000000e+00 972.0
42 TraesCS7A01G270800 chr1D 93.157 643 38 4 7392 8030 406828191 406828831 0.000000e+00 939.0
43 TraesCS7A01G270800 chr1D 93.146 642 35 8 7394 8030 415985012 415984375 0.000000e+00 933.0
44 TraesCS7A01G270800 chr1D 91.333 150 12 1 4011 4160 207730246 207730098 3.800000e-48 204.0
45 TraesCS7A01G270800 chr1D 87.943 141 13 4 2816 2956 293795287 293795151 6.450000e-36 163.0
46 TraesCS7A01G270800 chr5A 87.179 975 111 7 2819 3790 415575154 415574191 0.000000e+00 1096.0
47 TraesCS7A01G270800 chr5A 83.155 748 98 14 3237 3959 26929588 26928844 0.000000e+00 658.0
48 TraesCS7A01G270800 chr5A 82.700 526 59 19 3460 3955 403910039 403909516 9.570000e-119 438.0
49 TraesCS7A01G270800 chr5A 96.522 115 4 0 4047 4161 439567010 439567124 2.960000e-44 191.0
50 TraesCS7A01G270800 chr5A 97.143 105 3 0 4053 4157 471469698 471469802 2.300000e-40 178.0
51 TraesCS7A01G270800 chr5A 88.333 60 6 1 6180 6239 546771306 546771364 4.020000e-08 71.3
52 TraesCS7A01G270800 chr6A 83.831 1138 143 23 2826 3960 7340352 7339253 0.000000e+00 1044.0
53 TraesCS7A01G270800 chr3D 86.534 958 111 9 2819 3771 496365679 496364735 0.000000e+00 1038.0
54 TraesCS7A01G270800 chr3D 84.375 64 9 1 6177 6239 441260944 441261007 2.420000e-05 62.1
55 TraesCS7A01G270800 chr2B 87.061 912 105 8 2815 3723 464027273 464028174 0.000000e+00 1018.0
56 TraesCS7A01G270800 chr2B 87.342 158 11 1 4012 4160 11373494 11373651 1.070000e-38 172.0
57 TraesCS7A01G270800 chrUn 94.754 629 28 3 7396 8021 83928410 83929036 0.000000e+00 974.0
58 TraesCS7A01G270800 chrUn 84.795 513 56 9 2816 3326 468146841 468146349 5.600000e-136 496.0
59 TraesCS7A01G270800 chr6B 93.385 650 36 5 7388 8030 31940105 31939456 0.000000e+00 955.0
60 TraesCS7A01G270800 chr5D 93.427 639 36 4 7395 8030 530487718 530488353 0.000000e+00 942.0
61 TraesCS7A01G270800 chr5D 83.422 187 17 3 3783 3955 421651527 421651713 2.320000e-35 161.0
62 TraesCS7A01G270800 chr5D 92.063 63 4 1 6177 6239 352932416 352932477 3.990000e-13 87.9
63 TraesCS7A01G270800 chr5D 87.302 63 5 3 6177 6239 398490698 398490639 1.450000e-07 69.4
64 TraesCS7A01G270800 chr2A 79.700 1133 186 29 2858 3960 736987764 736986646 0.000000e+00 778.0
65 TraesCS7A01G270800 chr2A 79.299 599 85 23 3389 3958 605212184 605211596 4.550000e-102 383.0
66 TraesCS7A01G270800 chr2A 96.117 103 4 0 4042 4144 618966057 618966159 1.390000e-37 169.0
67 TraesCS7A01G270800 chr3A 79.671 487 69 11 3469 3954 456800280 456799823 2.800000e-84 324.0
68 TraesCS7A01G270800 chr3A 94.595 148 7 1 4013 4160 742957074 742956928 2.260000e-55 228.0
69 TraesCS7A01G270800 chr3A 94.595 111 6 0 4054 4164 147501380 147501270 1.070000e-38 172.0
70 TraesCS7A01G270800 chr3A 87.302 63 8 0 6177 6239 581848877 581848939 1.120000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G270800 chr7A 281372476 281380508 8032 True 14835.000000 14835 100.000000 1 8033 1 chr7A.!!$R2 8032
1 TraesCS7A01G270800 chr7A 24693380 24694503 1123 True 974.000000 974 82.880000 2912 4012 1 chr7A.!!$R1 1100
2 TraesCS7A01G270800 chr7A 693011348 693012004 656 True 374.500000 433 87.213000 2449 4519 2 chr7A.!!$R5 2070
3 TraesCS7A01G270800 chr7D 259290385 259296149 5764 True 4558.500000 4612 95.281000 1 7124 2 chr7D.!!$R3 7123
4 TraesCS7A01G270800 chr7D 56296359 56297469 1110 False 1312.000000 1312 87.943000 2830 3954 1 chr7D.!!$F1 1124
5 TraesCS7A01G270800 chr7D 53728787 53729673 886 True 1002.000000 1002 87.043000 2819 3718 1 chr7D.!!$R1 899
6 TraesCS7A01G270800 chr7D 601276900 601277535 635 False 328.500000 335 87.556000 2449 4517 2 chr7D.!!$F2 2068
7 TraesCS7A01G270800 chr7D 601320654 601321289 635 True 328.500000 335 87.556000 2449 4517 2 chr7D.!!$R4 2068
8 TraesCS7A01G270800 chr7B 238526832 238533662 6830 True 995.477778 2824 93.271222 2 7394 9 chr7B.!!$R1 7392
9 TraesCS7A01G270800 chr7B 680338704 680339341 637 True 356.000000 401 89.068500 2459 4519 2 chr7B.!!$R2 2060
10 TraesCS7A01G270800 chr6D 449254643 449255806 1163 True 1192.000000 1192 85.629000 2820 3960 1 chr6D.!!$R5 1140
11 TraesCS7A01G270800 chr6D 84306058 84306959 901 True 1029.000000 1029 87.309000 2815 3723 1 chr6D.!!$R2 908
12 TraesCS7A01G270800 chr6D 14615534 14616166 632 True 974.000000 974 94.479000 7400 8030 1 chr6D.!!$R1 630
13 TraesCS7A01G270800 chr6D 464465369 464466003 634 True 972.000000 972 94.349000 7396 8029 1 chr6D.!!$R6 633
14 TraesCS7A01G270800 chr6D 87385654 87386296 642 True 942.000000 942 93.168000 7390 8030 1 chr6D.!!$R3 640
15 TraesCS7A01G270800 chr5B 611993771 611994870 1099 False 1190.000000 1190 86.173000 2817 3934 1 chr5B.!!$F2 1117
16 TraesCS7A01G270800 chr5B 680927242 680927864 622 True 953.000000 953 94.382000 7411 8030 1 chr5B.!!$R1 619
17 TraesCS7A01G270800 chr4B 361967080 361968030 950 True 1146.000000 1146 88.382000 2830 3790 1 chr4B.!!$R1 960
18 TraesCS7A01G270800 chr1D 483693917 483695037 1120 False 1112.000000 1112 84.901000 2826 3959 1 chr1D.!!$F3 1133
19 TraesCS7A01G270800 chr1D 10536567 10537678 1111 False 972.000000 972 82.548000 2819 3958 1 chr1D.!!$F1 1139
20 TraesCS7A01G270800 chr1D 406828191 406828831 640 False 939.000000 939 93.157000 7392 8030 1 chr1D.!!$F2 638
21 TraesCS7A01G270800 chr1D 415984375 415985012 637 True 933.000000 933 93.146000 7394 8030 1 chr1D.!!$R3 636
22 TraesCS7A01G270800 chr5A 415574191 415575154 963 True 1096.000000 1096 87.179000 2819 3790 1 chr5A.!!$R3 971
23 TraesCS7A01G270800 chr5A 26928844 26929588 744 True 658.000000 658 83.155000 3237 3959 1 chr5A.!!$R1 722
24 TraesCS7A01G270800 chr5A 403909516 403910039 523 True 438.000000 438 82.700000 3460 3955 1 chr5A.!!$R2 495
25 TraesCS7A01G270800 chr6A 7339253 7340352 1099 True 1044.000000 1044 83.831000 2826 3960 1 chr6A.!!$R1 1134
26 TraesCS7A01G270800 chr3D 496364735 496365679 944 True 1038.000000 1038 86.534000 2819 3771 1 chr3D.!!$R1 952
27 TraesCS7A01G270800 chr2B 464027273 464028174 901 False 1018.000000 1018 87.061000 2815 3723 1 chr2B.!!$F2 908
28 TraesCS7A01G270800 chrUn 83928410 83929036 626 False 974.000000 974 94.754000 7396 8021 1 chrUn.!!$F1 625
29 TraesCS7A01G270800 chr6B 31939456 31940105 649 True 955.000000 955 93.385000 7388 8030 1 chr6B.!!$R1 642
30 TraesCS7A01G270800 chr5D 530487718 530488353 635 False 942.000000 942 93.427000 7395 8030 1 chr5D.!!$F3 635
31 TraesCS7A01G270800 chr2A 736986646 736987764 1118 True 778.000000 778 79.700000 2858 3960 1 chr2A.!!$R2 1102
32 TraesCS7A01G270800 chr2A 605211596 605212184 588 True 383.000000 383 79.299000 3389 3958 1 chr2A.!!$R1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 1165 0.389426 CGCCGGCAGTGTAGTAGTTT 60.389 55.0 28.98 0.0 0.00 2.66 F
1210 1929 0.248784 CGCCTACACCTACGGTAAGC 60.249 60.0 0.00 0.0 32.11 3.09 F
2283 3031 0.392461 GCAAATCGAGCACCCTGGTA 60.392 55.0 0.00 0.0 0.00 3.25 F
3600 4456 0.103208 CTCGCAGCCGGAACTAAGAT 59.897 55.0 5.05 0.0 34.56 2.40 F
4075 5118 0.603065 GCGTGAGGCCCATTTTCTTT 59.397 50.0 0.00 0.0 34.80 2.52 F
5902 7024 0.036732 GGTCAAGGACATGAGCACCA 59.963 55.0 0.00 0.0 44.99 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 2701 1.577736 AGATGGTCCTTGTCCCTCAG 58.422 55.0 0.00 0.0 0.00 3.35 R
3095 3948 0.719465 CGGTCCGATAATTATGGCGC 59.281 55.0 4.91 0.0 0.00 6.53 R
4201 5244 0.253894 AGGTGTAAATGGTACGCCCC 59.746 55.0 11.51 0.0 46.34 5.80 R
4784 5846 0.324943 AGTACCCATCGCTTTGCAGT 59.675 50.0 0.00 0.0 0.00 4.40 R
5918 7040 0.038166 TTCATTGGCACTCCACTCCC 59.962 55.0 0.00 0.0 43.33 4.30 R
7716 8941 0.527565 CTTTGGTGGATTTGCTCGGG 59.472 55.0 0.00 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 0.684535 TGGCATTCCGACAGACAAGA 59.315 50.000 0.00 0.00 34.14 3.02
71 72 1.264749 ACAGACAAGATAGGCCCGCA 61.265 55.000 0.00 0.00 0.00 5.69
138 139 2.456287 GATGGGCCGTCCTATCTGCC 62.456 65.000 15.17 0.00 44.36 4.85
142 143 2.279517 CCGTCCTATCTGCCACGC 60.280 66.667 0.00 0.00 0.00 5.34
156 157 1.007336 CCACGCGTAGAAAAGTCGCT 61.007 55.000 13.44 0.00 46.31 4.93
198 199 4.079385 ACCTGTTCCTTTACACCTTTTCCT 60.079 41.667 0.00 0.00 0.00 3.36
252 660 4.889780 ACCATCATAGTCTTCTCCCTTCT 58.110 43.478 0.00 0.00 0.00 2.85
315 725 2.043852 GGAGACGCAGAGGAGGGA 60.044 66.667 0.00 0.00 0.00 4.20
319 729 2.363147 ACGCAGAGGAGGGAGGAC 60.363 66.667 0.00 0.00 0.00 3.85
439 849 1.074566 CCCTTCTTGGCTTGTTCCTCT 59.925 52.381 0.00 0.00 0.00 3.69
457 867 2.021457 TCTCGCGGAATGTGATCAGTA 58.979 47.619 6.13 0.00 36.29 2.74
493 903 4.279169 GGATAATGGCTGGTACTACGTACA 59.721 45.833 6.51 0.00 40.41 2.90
496 906 0.524180 GGCTGGTACTACGTACACGC 60.524 60.000 0.85 7.23 44.43 5.34
554 964 1.458588 CCCCTCTGCCCTCTCCTAC 60.459 68.421 0.00 0.00 0.00 3.18
595 1006 2.397044 AAAATTGAAGGGAGTGGCCA 57.603 45.000 0.00 0.00 38.95 5.36
754 1165 0.389426 CGCCGGCAGTGTAGTAGTTT 60.389 55.000 28.98 0.00 0.00 2.66
760 1171 3.673809 CGGCAGTGTAGTAGTTTCTGTTC 59.326 47.826 0.00 0.00 0.00 3.18
763 1174 5.177696 GGCAGTGTAGTAGTTTCTGTTCTTG 59.822 44.000 0.00 0.00 0.00 3.02
764 1175 5.333416 GCAGTGTAGTAGTTTCTGTTCTTGC 60.333 44.000 0.00 0.00 0.00 4.01
766 1177 5.070580 AGTGTAGTAGTTTCTGTTCTTGCCT 59.929 40.000 0.00 0.00 0.00 4.75
768 1179 5.758296 TGTAGTAGTTTCTGTTCTTGCCTTG 59.242 40.000 0.00 0.00 0.00 3.61
772 1183 1.691196 TTCTGTTCTTGCCTTGGGTG 58.309 50.000 0.00 0.00 0.00 4.61
786 1197 4.603535 GGTGTGGGCAGGCTGGTT 62.604 66.667 17.64 0.00 0.00 3.67
959 1678 1.095600 GGAAGAGGGGCGATTTTGAC 58.904 55.000 0.00 0.00 0.00 3.18
976 1695 1.140852 TGACACTGTTCTTGGGTGGAG 59.859 52.381 0.00 0.00 35.53 3.86
1209 1928 0.383231 CCGCCTACACCTACGGTAAG 59.617 60.000 0.00 0.00 40.77 2.34
1210 1929 0.248784 CGCCTACACCTACGGTAAGC 60.249 60.000 0.00 0.00 32.11 3.09
1211 1930 0.819582 GCCTACACCTACGGTAAGCA 59.180 55.000 0.00 0.00 32.11 3.91
1212 1931 1.470458 GCCTACACCTACGGTAAGCAC 60.470 57.143 0.00 0.00 32.11 4.40
1213 1932 1.820519 CCTACACCTACGGTAAGCACA 59.179 52.381 0.00 0.00 32.11 4.57
1214 1933 2.231964 CCTACACCTACGGTAAGCACAA 59.768 50.000 0.00 0.00 32.11 3.33
1235 1954 0.449388 CACCGGCAGAGCTCAATTTC 59.551 55.000 17.77 0.00 0.00 2.17
1364 2083 1.079888 GTTTGGCCCCAATTGCTCG 60.080 57.895 0.00 0.00 35.70 5.03
1451 2170 6.239217 TGTATGTACAGGAGAAATGATGCT 57.761 37.500 0.33 0.00 0.00 3.79
1466 2185 5.537300 ATGATGCTACTCCTTTACATCGT 57.463 39.130 0.00 0.00 39.96 3.73
1591 2310 4.083271 GGAAAGACTTACACAATGACTGGC 60.083 45.833 0.00 0.00 0.00 4.85
1667 2412 1.794222 GCGGCACCAGTGATGTTAC 59.206 57.895 0.99 0.00 0.00 2.50
1674 2419 3.058914 GCACCAGTGATGTTACAGTTCAC 60.059 47.826 10.18 10.18 40.00 3.18
1749 2494 7.698506 AAGAGAATTCATGCTGAAATTCTCA 57.301 32.000 30.13 2.72 43.56 3.27
1800 2545 4.527816 AGAGATCTTCTGAGCCATGATACC 59.472 45.833 0.00 0.00 33.93 2.73
1824 2569 4.180057 CACCTCTTAGACTGCTTGATGAC 58.820 47.826 0.00 0.00 0.00 3.06
1954 2701 3.627577 TGAAAAGCTCACTGAGGAAACAC 59.372 43.478 8.17 0.00 0.00 3.32
2002 2749 4.389374 TCTTCTTGGAATGTGTGAAGGTC 58.611 43.478 0.00 0.00 35.98 3.85
2122 2869 4.424266 GCTTTGAACGAAGCGAGC 57.576 55.556 10.42 0.00 42.17 5.03
2283 3031 0.392461 GCAAATCGAGCACCCTGGTA 60.392 55.000 0.00 0.00 0.00 3.25
2355 3103 4.080469 AGCATGTTTCCATCATCTCTGAGT 60.080 41.667 4.32 0.00 34.12 3.41
2356 3104 4.639310 GCATGTTTCCATCATCTCTGAGTT 59.361 41.667 4.32 0.00 34.12 3.01
2357 3105 5.125097 GCATGTTTCCATCATCTCTGAGTTT 59.875 40.000 4.32 0.00 34.12 2.66
2358 3106 6.677431 GCATGTTTCCATCATCTCTGAGTTTC 60.677 42.308 4.32 0.00 34.12 2.78
2359 3107 6.119240 TGTTTCCATCATCTCTGAGTTTCT 57.881 37.500 4.32 0.00 34.12 2.52
2360 3108 6.537355 TGTTTCCATCATCTCTGAGTTTCTT 58.463 36.000 4.32 0.00 34.12 2.52
2361 3109 6.429078 TGTTTCCATCATCTCTGAGTTTCTTG 59.571 38.462 4.32 0.00 34.12 3.02
2527 3289 7.672240 AGGTTTGTTTGGTTTGTTTTCTTCTA 58.328 30.769 0.00 0.00 0.00 2.10
2567 3329 9.734984 ATCCCGGTGGTTTAATTCTTATATAAG 57.265 33.333 15.25 15.25 34.65 1.73
2848 3689 5.348259 TGAAAAGGAGATTAAAACCCCCT 57.652 39.130 0.00 0.00 0.00 4.79
2856 3697 1.154430 TTAAAACCCCCTGCCTCTGT 58.846 50.000 0.00 0.00 0.00 3.41
2917 3758 7.861629 TCCATCAAGGTCTAACAAGAACATAT 58.138 34.615 0.00 0.00 39.02 1.78
2935 3776 0.839946 ATATCAAGCCACCGGAAGCT 59.160 50.000 9.46 13.50 42.40 3.74
2950 3791 3.489398 CGGAAGCTATCACTCACACCTAC 60.489 52.174 0.00 0.00 0.00 3.18
2951 3792 3.447586 GGAAGCTATCACTCACACCTACA 59.552 47.826 0.00 0.00 0.00 2.74
2952 3793 4.081642 GGAAGCTATCACTCACACCTACAA 60.082 45.833 0.00 0.00 0.00 2.41
2953 3794 5.479306 GAAGCTATCACTCACACCTACAAA 58.521 41.667 0.00 0.00 0.00 2.83
2954 3795 5.483685 AGCTATCACTCACACCTACAAAA 57.516 39.130 0.00 0.00 0.00 2.44
2955 3796 5.238583 AGCTATCACTCACACCTACAAAAC 58.761 41.667 0.00 0.00 0.00 2.43
2956 3797 4.091509 GCTATCACTCACACCTACAAAACG 59.908 45.833 0.00 0.00 0.00 3.60
2957 3798 3.530265 TCACTCACACCTACAAAACGT 57.470 42.857 0.00 0.00 0.00 3.99
3052 3900 3.058708 CGTATCAGAACGAATAGCCGGTA 60.059 47.826 1.90 0.00 45.68 4.02
3095 3948 3.544651 CACATGCACACGTTTTAGACAG 58.455 45.455 0.00 0.00 0.00 3.51
3117 3970 2.000447 GCCATAATTATCGGACCGCTC 59.000 52.381 9.66 0.00 0.00 5.03
3235 4088 4.098044 GTCCATCCAGACACGAAGATTCTA 59.902 45.833 0.00 0.00 36.73 2.10
3241 4094 5.124138 TCCAGACACGAAGATTCTAGAAGAC 59.876 44.000 11.53 7.71 0.00 3.01
3251 4104 3.895232 TTCTAGAAGACCTGTCATGCC 57.105 47.619 0.00 0.00 0.00 4.40
3265 4118 3.099211 ATGCCTAGCACCTGCCGAG 62.099 63.158 0.00 0.00 43.04 4.63
3278 4131 2.821366 CCGAGCAGGCATGACACC 60.821 66.667 0.62 0.00 0.00 4.16
3311 4164 1.705337 CGGCCAGGCATAACTTGACG 61.705 60.000 15.19 0.00 38.94 4.35
3326 4179 0.468226 TGACGTCTCCACCAAAGCTT 59.532 50.000 17.92 0.00 0.00 3.74
3361 4214 1.159664 ACTCCACCTCCTGCCTCTT 59.840 57.895 0.00 0.00 0.00 2.85
3367 4220 1.072965 CACCTCCTGCCTCTTGTCTTT 59.927 52.381 0.00 0.00 0.00 2.52
3418 4271 1.544691 AGAGAAACGACACCGCAGTAT 59.455 47.619 0.00 0.00 39.95 2.12
3478 4334 4.363990 CGGAGCAGCACGAGTGGT 62.364 66.667 1.70 1.70 42.74 4.16
3547 4403 2.202919 CGCCATCGTCTGCCATCA 60.203 61.111 0.00 0.00 0.00 3.07
3599 4455 1.248785 ACTCGCAGCCGGAACTAAGA 61.249 55.000 5.05 0.00 34.56 2.10
3600 4456 0.103208 CTCGCAGCCGGAACTAAGAT 59.897 55.000 5.05 0.00 34.56 2.40
3603 4459 1.291132 GCAGCCGGAACTAAGATGAC 58.709 55.000 5.05 0.00 0.00 3.06
3649 4505 1.918293 AGGCCGACCATCTCCAACA 60.918 57.895 0.00 0.00 39.06 3.33
3695 4551 1.957177 GCACCGACCAGATCAGATCTA 59.043 52.381 12.88 0.00 37.58 1.98
3764 4626 2.126071 CGAAGCCGGATGACACGT 60.126 61.111 5.05 0.00 0.00 4.49
3812 4817 1.907739 GTGATCAGGCTGCCCTACA 59.092 57.895 16.57 8.15 40.33 2.74
3882 4916 2.584418 CAGATCTGCCGTGCCTCG 60.584 66.667 10.38 0.00 39.52 4.63
3974 5017 3.640407 GGCAGTGGCAGGGTGAGA 61.640 66.667 12.58 0.00 43.71 3.27
3986 5029 3.107601 CAGGGTGAGAGAAGGTGGATTA 58.892 50.000 0.00 0.00 0.00 1.75
3992 5035 2.367241 GAGAGAAGGTGGATTAGGGAGC 59.633 54.545 0.00 0.00 0.00 4.70
3996 5039 2.819284 GGTGGATTAGGGAGCGGGG 61.819 68.421 0.00 0.00 0.00 5.73
3997 5040 2.447765 TGGATTAGGGAGCGGGGG 60.448 66.667 0.00 0.00 0.00 5.40
3998 5041 3.955044 GGATTAGGGAGCGGGGGC 61.955 72.222 0.00 0.00 0.00 5.80
4016 5059 4.496336 GGCTAGGGCTGGGCAGTG 62.496 72.222 0.00 0.00 38.73 3.66
4017 5060 4.496336 GCTAGGGCTGGGCAGTGG 62.496 72.222 0.00 0.00 35.22 4.00
4018 5061 4.496336 CTAGGGCTGGGCAGTGGC 62.496 72.222 8.47 8.47 40.13 5.01
4024 5067 3.790437 CTGGGCAGTGGCGGATCT 61.790 66.667 10.99 0.00 42.47 2.75
4025 5068 2.364973 TGGGCAGTGGCGGATCTA 60.365 61.111 10.99 0.00 42.47 1.98
4026 5069 2.374830 CTGGGCAGTGGCGGATCTAG 62.375 65.000 10.99 0.00 42.47 2.43
4027 5070 2.423446 GGCAGTGGCGGATCTAGG 59.577 66.667 0.00 0.00 42.47 3.02
4028 5071 2.280457 GCAGTGGCGGATCTAGGC 60.280 66.667 8.01 8.01 0.00 3.93
4033 5076 3.631046 GGCGGATCTAGGCCCCAG 61.631 72.222 0.00 0.00 43.64 4.45
4034 5077 3.631046 GCGGATCTAGGCCCCAGG 61.631 72.222 0.00 0.00 0.00 4.45
4035 5078 2.122813 CGGATCTAGGCCCCAGGT 60.123 66.667 0.00 0.00 0.00 4.00
4036 5079 2.210711 CGGATCTAGGCCCCAGGTC 61.211 68.421 0.00 2.31 0.00 3.85
4037 5080 2.210711 GGATCTAGGCCCCAGGTCG 61.211 68.421 0.00 0.00 29.39 4.79
4038 5081 2.122813 ATCTAGGCCCCAGGTCGG 60.123 66.667 0.00 0.00 29.39 4.79
4073 5116 4.002797 GCGTGAGGCCCATTTTCT 57.997 55.556 0.00 0.00 34.80 2.52
4074 5117 2.267045 GCGTGAGGCCCATTTTCTT 58.733 52.632 0.00 0.00 34.80 2.52
4075 5118 0.603065 GCGTGAGGCCCATTTTCTTT 59.397 50.000 0.00 0.00 34.80 2.52
4076 5119 1.669795 GCGTGAGGCCCATTTTCTTTG 60.670 52.381 0.00 0.00 34.80 2.77
4077 5120 1.613437 CGTGAGGCCCATTTTCTTTGT 59.387 47.619 0.00 0.00 0.00 2.83
4078 5121 2.607771 CGTGAGGCCCATTTTCTTTGTG 60.608 50.000 0.00 0.00 0.00 3.33
4079 5122 1.969923 TGAGGCCCATTTTCTTTGTGG 59.030 47.619 0.00 0.00 0.00 4.17
4083 5126 2.460757 CCCATTTTCTTTGTGGGCTG 57.539 50.000 0.00 0.00 45.50 4.85
4084 5127 1.693606 CCCATTTTCTTTGTGGGCTGT 59.306 47.619 0.00 0.00 45.50 4.40
4085 5128 2.896685 CCCATTTTCTTTGTGGGCTGTA 59.103 45.455 0.00 0.00 45.50 2.74
4086 5129 3.056607 CCCATTTTCTTTGTGGGCTGTAG 60.057 47.826 0.00 0.00 45.50 2.74
4087 5130 3.056607 CCATTTTCTTTGTGGGCTGTAGG 60.057 47.826 0.00 0.00 0.00 3.18
4088 5131 2.286365 TTTCTTTGTGGGCTGTAGGG 57.714 50.000 0.00 0.00 0.00 3.53
4089 5132 1.440618 TTCTTTGTGGGCTGTAGGGA 58.559 50.000 0.00 0.00 0.00 4.20
4090 5133 1.440618 TCTTTGTGGGCTGTAGGGAA 58.559 50.000 0.00 0.00 0.00 3.97
4091 5134 1.777878 TCTTTGTGGGCTGTAGGGAAA 59.222 47.619 0.00 0.00 0.00 3.13
4092 5135 2.175931 TCTTTGTGGGCTGTAGGGAAAA 59.824 45.455 0.00 0.00 0.00 2.29
4093 5136 2.990740 TTGTGGGCTGTAGGGAAAAT 57.009 45.000 0.00 0.00 0.00 1.82
4094 5137 4.043561 TCTTTGTGGGCTGTAGGGAAAATA 59.956 41.667 0.00 0.00 0.00 1.40
4095 5138 3.359695 TGTGGGCTGTAGGGAAAATAC 57.640 47.619 0.00 0.00 0.00 1.89
4096 5139 2.916934 TGTGGGCTGTAGGGAAAATACT 59.083 45.455 0.00 0.00 0.00 2.12
4097 5140 3.279434 GTGGGCTGTAGGGAAAATACTG 58.721 50.000 0.00 0.00 0.00 2.74
4098 5141 2.916934 TGGGCTGTAGGGAAAATACTGT 59.083 45.455 0.00 0.00 0.00 3.55
4099 5142 4.080751 GTGGGCTGTAGGGAAAATACTGTA 60.081 45.833 0.00 0.00 0.00 2.74
4100 5143 4.163458 TGGGCTGTAGGGAAAATACTGTAG 59.837 45.833 0.00 0.00 0.00 2.74
4101 5144 4.127907 GGCTGTAGGGAAAATACTGTAGC 58.872 47.826 0.00 0.00 0.00 3.58
4102 5145 4.383770 GGCTGTAGGGAAAATACTGTAGCA 60.384 45.833 0.00 0.00 32.29 3.49
4103 5146 5.183228 GCTGTAGGGAAAATACTGTAGCAA 58.817 41.667 0.00 0.00 31.54 3.91
4104 5147 5.064834 GCTGTAGGGAAAATACTGTAGCAAC 59.935 44.000 0.00 0.00 31.54 4.17
4105 5148 6.368779 TGTAGGGAAAATACTGTAGCAACT 57.631 37.500 0.00 0.00 0.00 3.16
4106 5149 6.170506 TGTAGGGAAAATACTGTAGCAACTG 58.829 40.000 0.00 0.00 0.00 3.16
4107 5150 4.010349 AGGGAAAATACTGTAGCAACTGC 58.990 43.478 0.00 0.00 42.49 4.40
4121 5164 4.133856 GCAACTGCTACAGTACACAAAG 57.866 45.455 0.00 0.00 44.62 2.77
4122 5165 3.058914 GCAACTGCTACAGTACACAAAGG 60.059 47.826 0.00 0.00 44.62 3.11
4123 5166 3.402628 ACTGCTACAGTACACAAAGGG 57.597 47.619 0.00 0.00 43.46 3.95
4124 5167 2.038557 ACTGCTACAGTACACAAAGGGG 59.961 50.000 0.00 0.00 43.46 4.79
4125 5168 1.349688 TGCTACAGTACACAAAGGGGG 59.650 52.381 0.00 0.00 0.00 5.40
4126 5169 1.949079 GCTACAGTACACAAAGGGGGC 60.949 57.143 0.00 0.00 0.00 5.80
4127 5170 0.694196 TACAGTACACAAAGGGGGCC 59.306 55.000 0.00 0.00 0.00 5.80
4128 5171 1.304134 CAGTACACAAAGGGGGCCC 60.304 63.158 15.76 15.76 0.00 5.80
4129 5172 2.360726 GTACACAAAGGGGGCCCG 60.361 66.667 17.79 4.84 41.95 6.13
4130 5173 3.653078 TACACAAAGGGGGCCCGG 61.653 66.667 17.79 8.60 41.95 5.73
4151 5194 4.891037 GCTGGGCTGGGCTGGATC 62.891 72.222 0.00 0.00 0.00 3.36
4152 5195 4.201122 CTGGGCTGGGCTGGATCC 62.201 72.222 4.20 4.20 0.00 3.36
4216 5259 3.413166 GCGGGGCGTACCATTTAC 58.587 61.111 0.83 0.00 42.91 2.01
4217 5260 1.449956 GCGGGGCGTACCATTTACA 60.450 57.895 0.83 0.00 42.91 2.41
4235 5278 9.449719 CCATTTACACCTTAGTCTGAACTATTT 57.550 33.333 0.00 0.00 37.81 1.40
4363 5425 3.129502 CACCATGAGCCCAGCACG 61.130 66.667 0.00 0.00 0.00 5.34
4403 5465 2.423185 CAGGAACACACTTCTGTTTGCA 59.577 45.455 0.00 0.00 34.40 4.08
4502 5564 5.642919 ACAAAGAGAGCTTGCAAGATTAGAG 59.357 40.000 30.39 14.47 33.79 2.43
4538 5600 3.386592 GAGTCAGCCTCCTGCACT 58.613 61.111 0.00 0.00 44.83 4.40
4552 5614 2.354503 CCTGCACTAGTCATGCTGAAGT 60.355 50.000 10.93 0.00 42.73 3.01
4577 5639 4.405116 AAGAGAGAAGGATGCACAGATC 57.595 45.455 0.00 0.00 0.00 2.75
4619 5681 6.381420 TCACTTGAAATTTTCCAACCCTTGTA 59.619 34.615 6.68 0.00 0.00 2.41
4639 5701 4.517453 TGTAACAGTGTTAATTGCAGGACC 59.483 41.667 17.16 2.16 0.00 4.46
4640 5702 3.222173 ACAGTGTTAATTGCAGGACCA 57.778 42.857 0.00 0.00 0.00 4.02
4665 5727 4.082081 ACAATTTCATGCACCATGTACCTG 60.082 41.667 5.24 0.00 41.98 4.00
4675 5737 4.811557 GCACCATGTACCTGTCTATTCTTC 59.188 45.833 0.00 0.00 0.00 2.87
4748 5810 8.780846 TGTTCAGTCTCAACTTAACTGTTTAA 57.219 30.769 0.00 0.00 39.38 1.52
4780 5842 0.729116 CTGACGACCATGCCAATGAC 59.271 55.000 0.00 0.00 35.67 3.06
4784 5846 2.035469 ACCATGCCAATGACCGCA 59.965 55.556 0.00 0.00 39.79 5.69
5035 6097 4.034163 GTGCTGATCATGATGACTTGTCAG 59.966 45.833 14.30 15.82 35.38 3.51
5037 6099 4.634883 GCTGATCATGATGACTTGTCAGTT 59.365 41.667 14.30 0.00 35.12 3.16
5064 6126 6.071221 CCAATCAAACAATGGATCTTCCTCAA 60.071 38.462 0.00 0.00 37.46 3.02
5553 6615 4.500375 GGCAAACCTTATCCTCATGAATGC 60.500 45.833 0.00 0.00 0.00 3.56
5756 6818 4.848357 AGTCTGTACCAAGGAAATGATGG 58.152 43.478 0.00 0.00 40.16 3.51
5850 6972 2.277969 GACATGAGCACCAGTGATGAG 58.722 52.381 0.00 0.00 0.00 2.90
5902 7024 0.036732 GGTCAAGGACATGAGCACCA 59.963 55.000 0.00 0.00 44.99 4.17
5918 7040 0.687354 ACCAGTGGTGAAGTAGCCAG 59.313 55.000 15.86 0.00 35.14 4.85
5976 7098 1.148310 CCGGTGACATCAGTTGTGTC 58.852 55.000 0.00 0.00 44.77 3.67
6057 7179 6.611642 AGGCAGAGGTAATGATGTTAGTTAGA 59.388 38.462 0.00 0.00 0.00 2.10
6071 7274 5.066764 TGTTAGTTAGAAACAAACTGTGGGC 59.933 40.000 0.00 0.00 37.71 5.36
6106 7309 7.590689 CGCTAATAACGGGAAACTTAACAAAAA 59.409 33.333 0.00 0.00 0.00 1.94
6174 7377 6.089551 CGCCTAAATCACCAGTCGATATTTAG 59.910 42.308 0.00 0.00 38.76 1.85
6175 7378 6.128526 GCCTAAATCACCAGTCGATATTTAGC 60.129 42.308 0.00 0.00 38.17 3.09
6176 7379 7.155328 CCTAAATCACCAGTCGATATTTAGCT 58.845 38.462 0.00 0.00 38.17 3.32
6178 7381 7.865706 AAATCACCAGTCGATATTTAGCTTT 57.134 32.000 0.00 0.00 0.00 3.51
6203 7406 5.941948 TTCTTTTCGAAAAGGACCATCTC 57.058 39.130 37.27 0.00 44.22 2.75
6209 7412 1.916181 GAAAAGGACCATCTCCCCTGA 59.084 52.381 0.00 0.00 40.53 3.86
6293 7496 8.532977 AATTAAACCAATGTCTTTGTGTATGC 57.467 30.769 0.00 0.00 33.15 3.14
6375 7578 3.290308 CATAGATGCAGTCCCGAGTAC 57.710 52.381 0.00 0.00 0.00 2.73
6376 7579 1.688772 TAGATGCAGTCCCGAGTACC 58.311 55.000 0.00 0.00 0.00 3.34
6433 7636 4.063689 CAAATAGGCAGCGAGAGATCATT 58.936 43.478 0.00 0.00 0.00 2.57
6448 7651 2.183478 TCATTGAGTTGTGGCACGAT 57.817 45.000 11.43 0.00 0.00 3.73
6504 7707 8.929671 TTCTTCCTCCTCTTCAAGGGAGATGT 62.930 46.154 18.74 0.00 44.98 3.06
6604 7807 0.026803 GCGAGCTTAACTCCGCAATG 59.973 55.000 10.01 0.00 43.01 2.82
6611 7814 0.813610 TAACTCCGCAATGGCATCCG 60.814 55.000 0.00 6.99 41.24 4.18
6620 7823 2.825532 GCAATGGCATCCGGGTAAATAT 59.174 45.455 0.00 0.00 40.72 1.28
6621 7824 3.367292 GCAATGGCATCCGGGTAAATATG 60.367 47.826 0.00 0.00 40.72 1.78
6622 7825 3.806949 ATGGCATCCGGGTAAATATGT 57.193 42.857 0.00 0.00 0.00 2.29
6669 7881 4.023279 TGGTTTCGAACTGTCCATGAATTG 60.023 41.667 0.00 0.00 0.00 2.32
6672 7884 6.205784 GTTTCGAACTGTCCATGAATTGAAA 58.794 36.000 0.00 0.00 0.00 2.69
6679 7891 6.306987 ACTGTCCATGAATTGAAACCTAAGT 58.693 36.000 0.00 0.00 0.00 2.24
6680 7892 7.458397 ACTGTCCATGAATTGAAACCTAAGTA 58.542 34.615 0.00 0.00 0.00 2.24
6681 7893 7.390718 ACTGTCCATGAATTGAAACCTAAGTAC 59.609 37.037 0.00 0.00 0.00 2.73
6682 7894 7.227873 TGTCCATGAATTGAAACCTAAGTACA 58.772 34.615 0.00 0.00 0.00 2.90
6683 7895 7.888021 TGTCCATGAATTGAAACCTAAGTACAT 59.112 33.333 0.00 0.00 0.00 2.29
6874 8086 1.203063 AGCTATCTCGCCTGGTATGGA 60.203 52.381 0.00 0.00 0.00 3.41
7046 8258 2.348666 GCGCTTGATCTTTGACGTATGT 59.651 45.455 0.00 0.00 0.00 2.29
7128 8342 1.815003 TGCTCCACCGCATCGATTG 60.815 57.895 0.00 0.00 34.44 2.67
7138 8352 1.267038 CGCATCGATTGGTTTCACTCG 60.267 52.381 0.00 0.00 44.17 4.18
7142 8356 2.400399 TCGATTGGTTTCACTCGTGTC 58.600 47.619 6.15 0.00 43.55 3.67
7146 8360 4.615223 CGATTGGTTTCACTCGTGTCTCTA 60.615 45.833 0.00 0.00 39.96 2.43
7147 8361 3.637998 TGGTTTCACTCGTGTCTCTAC 57.362 47.619 0.00 0.00 0.00 2.59
7148 8362 2.295349 TGGTTTCACTCGTGTCTCTACC 59.705 50.000 0.00 0.00 0.00 3.18
7149 8363 2.557490 GGTTTCACTCGTGTCTCTACCT 59.443 50.000 0.00 0.00 0.00 3.08
7150 8364 3.005578 GGTTTCACTCGTGTCTCTACCTT 59.994 47.826 0.00 0.00 0.00 3.50
7151 8365 3.917329 TTCACTCGTGTCTCTACCTTG 57.083 47.619 0.00 0.00 0.00 3.61
7152 8366 2.860009 TCACTCGTGTCTCTACCTTGT 58.140 47.619 0.00 0.00 0.00 3.16
7153 8367 3.220110 TCACTCGTGTCTCTACCTTGTT 58.780 45.455 0.00 0.00 0.00 2.83
7158 8372 3.635373 TCGTGTCTCTACCTTGTTCTTGT 59.365 43.478 0.00 0.00 0.00 3.16
7170 8384 4.690280 CCTTGTTCTTGTTTTTGCTTGTGT 59.310 37.500 0.00 0.00 0.00 3.72
7179 8393 4.328440 TGTTTTTGCTTGTGTATTGTGTGC 59.672 37.500 0.00 0.00 0.00 4.57
7185 8399 0.306228 TGTGTATTGTGTGCGTGTGC 59.694 50.000 0.00 0.00 43.20 4.57
7226 8446 6.086765 GTGTGCAATCTTACAAAAGTGAATCG 59.913 38.462 0.00 0.00 34.13 3.34
7266 8486 2.022195 ACTATCCGTGCTGTCGTATGT 58.978 47.619 0.00 0.00 0.00 2.29
7279 8499 1.022451 CGTATGTCCGTTTGTGGGGG 61.022 60.000 0.00 0.00 0.00 5.40
7304 8524 5.419542 TCGTCCATCTAGTCCATCTTTTTG 58.580 41.667 0.00 0.00 0.00 2.44
7305 8525 5.046591 TCGTCCATCTAGTCCATCTTTTTGT 60.047 40.000 0.00 0.00 0.00 2.83
7306 8526 5.063944 CGTCCATCTAGTCCATCTTTTTGTG 59.936 44.000 0.00 0.00 0.00 3.33
7307 8527 5.940470 GTCCATCTAGTCCATCTTTTTGTGT 59.060 40.000 0.00 0.00 0.00 3.72
7308 8528 6.092807 GTCCATCTAGTCCATCTTTTTGTGTC 59.907 42.308 0.00 0.00 0.00 3.67
7309 8529 5.355350 CCATCTAGTCCATCTTTTTGTGTCC 59.645 44.000 0.00 0.00 0.00 4.02
7314 8534 4.901250 AGTCCATCTTTTTGTGTCCCAAAT 59.099 37.500 0.00 0.00 42.45 2.32
7316 8536 4.898265 TCCATCTTTTTGTGTCCCAAATGA 59.102 37.500 0.00 0.00 42.45 2.57
7333 8553 6.755141 CCCAAATGAGAAGTCAAGCAATAATG 59.245 38.462 0.00 0.00 35.88 1.90
7337 8557 6.053632 TGAGAAGTCAAGCAATAATGAGGA 57.946 37.500 0.00 0.00 0.00 3.71
7351 8571 2.341846 TGAGGAAACTTGACCCACAC 57.658 50.000 0.00 0.00 44.43 3.82
7357 8577 0.916086 AACTTGACCCACACCTGACA 59.084 50.000 0.00 0.00 0.00 3.58
7459 8680 2.143122 CATGGCAGTACAACGAACACT 58.857 47.619 0.00 0.00 0.00 3.55
7615 8836 2.678934 TCGTCGTGCTAAGGCCCT 60.679 61.111 0.00 0.00 37.74 5.19
7631 8853 1.115930 CCCTATAGGACCAGCGCACT 61.116 60.000 21.07 1.70 38.24 4.40
7716 8941 2.229208 GTAGACGAACAACGACGAGAC 58.771 52.381 0.00 0.00 45.77 3.36
7778 9003 1.374885 CACACGCCCACCAACGATA 60.375 57.895 0.00 0.00 0.00 2.92
7796 9021 1.452953 TACTAGATGCACCGCCGGAG 61.453 60.000 11.71 1.88 0.00 4.63
7841 9066 1.507140 TTCCATATTCAGGGAGCCGT 58.493 50.000 0.00 0.00 35.67 5.68
7859 9084 3.515286 CGCCGTCTCGCCTTCCTA 61.515 66.667 0.00 0.00 0.00 2.94
7862 9087 1.946475 GCCGTCTCGCCTTCCTAAGT 61.946 60.000 0.00 0.00 0.00 2.24
7988 9213 4.640690 AGGCAGACCTCCGGTGGT 62.641 66.667 27.79 27.79 46.34 4.16
8023 9248 4.083057 GCAGAAACCCTAGCTTTCTTTCTG 60.083 45.833 20.68 20.68 45.58 3.02
8030 9255 2.869101 AGCTTTCTTTCTGGGAGGAC 57.131 50.000 0.00 0.00 0.00 3.85
8031 9256 2.057922 AGCTTTCTTTCTGGGAGGACA 58.942 47.619 0.00 0.00 0.00 4.02
8032 9257 2.155279 GCTTTCTTTCTGGGAGGACAC 58.845 52.381 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 2.017559 GAGAGTTCGTGCGGGCCTAT 62.018 60.000 0.84 0.00 0.00 2.57
71 72 2.584391 GGGCCCACAGAGAGTTCGT 61.584 63.158 19.95 0.00 0.00 3.85
102 103 3.903783 CGGCCAATCACCGTCAAT 58.096 55.556 2.24 0.00 45.70 2.57
138 139 4.999550 GCGACTTTTCTACGCGTG 57.000 55.556 24.59 12.26 42.65 5.34
142 143 3.169733 GGTACAGAGCGACTTTTCTACG 58.830 50.000 0.00 0.00 0.00 3.51
156 157 2.158871 GGTGTGTTCTTGTGGGTACAGA 60.159 50.000 0.00 0.00 38.23 3.41
234 642 6.498538 AGAAGAAGAAGGGAGAAGACTATGA 58.501 40.000 0.00 0.00 0.00 2.15
252 660 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
315 725 1.215647 GGCAAGATCGTGTCGTCCT 59.784 57.895 10.41 0.00 0.00 3.85
319 729 1.550065 CTAGTGGCAAGATCGTGTCG 58.450 55.000 8.71 0.00 0.00 4.35
439 849 1.749063 ACTACTGATCACATTCCGCGA 59.251 47.619 8.23 0.00 0.00 5.87
457 867 3.763897 GCCATTATCCAACAGAACCAACT 59.236 43.478 0.00 0.00 0.00 3.16
493 903 4.153475 ACTTGTTTTTCTATGCATACGCGT 59.847 37.500 19.17 19.17 42.97 6.01
496 906 6.742718 CCAAGACTTGTTTTTCTATGCATACG 59.257 38.462 14.03 0.00 0.00 3.06
531 941 2.766229 GAGGGCAGAGGGGGAGAC 60.766 72.222 0.00 0.00 0.00 3.36
554 964 2.191786 TTACGCACCTCACATGGGGG 62.192 60.000 2.10 0.00 34.46 5.40
754 1165 0.550914 ACACCCAAGGCAAGAACAGA 59.449 50.000 0.00 0.00 0.00 3.41
760 1171 3.305516 GCCCACACCCAAGGCAAG 61.306 66.667 0.00 0.00 46.34 4.01
766 1177 4.601794 CAGCCTGCCCACACCCAA 62.602 66.667 0.00 0.00 0.00 4.12
772 1183 3.365265 CGAAACCAGCCTGCCCAC 61.365 66.667 0.00 0.00 0.00 4.61
862 1581 1.371635 CAAGAAACCAAAGCCGGCG 60.372 57.895 23.20 9.47 0.00 6.46
959 1678 0.250901 CCCTCCACCCAAGAACAGTG 60.251 60.000 0.00 0.00 0.00 3.66
976 1695 2.190488 CTTCTCAGTCCTGCACCCCC 62.190 65.000 0.00 0.00 0.00 5.40
987 1706 2.370445 CCCCATCGCCCTTCTCAGT 61.370 63.158 0.00 0.00 0.00 3.41
1209 1928 3.730761 CTCTGCCGGTGCTTGTGC 61.731 66.667 1.90 0.00 38.71 4.57
1210 1929 3.730761 GCTCTGCCGGTGCTTGTG 61.731 66.667 1.90 0.00 38.71 3.33
1211 1930 3.890936 GAGCTCTGCCGGTGCTTGT 62.891 63.158 6.43 0.00 43.67 3.16
1212 1931 3.123620 GAGCTCTGCCGGTGCTTG 61.124 66.667 6.43 0.00 43.67 4.01
1213 1932 2.475371 ATTGAGCTCTGCCGGTGCTT 62.475 55.000 16.19 0.00 43.67 3.91
1214 1933 2.475371 AATTGAGCTCTGCCGGTGCT 62.475 55.000 16.19 8.26 45.89 4.40
1235 1954 2.032054 ACATCGCCATACATTCTTTGCG 59.968 45.455 0.00 0.00 43.05 4.85
1273 1992 4.440525 CCGAATGAAATCCCAACATCAAGG 60.441 45.833 0.00 0.00 0.00 3.61
1451 2170 8.316214 AGACCAAATTAACGATGTAAAGGAGTA 58.684 33.333 0.00 0.00 0.00 2.59
1466 2185 7.831691 TCAGTTCATCCAAAGACCAAATTAA 57.168 32.000 0.00 0.00 0.00 1.40
1667 2412 7.484007 GCAAATATCATCTCACAAAGTGAACTG 59.516 37.037 1.19 2.56 42.26 3.16
1674 2419 6.688637 TGAGGCAAATATCATCTCACAAAG 57.311 37.500 0.00 0.00 30.58 2.77
1749 2494 9.736414 ACAGCTTCATTATATATCTCAATTGCT 57.264 29.630 0.00 0.00 0.00 3.91
1764 2509 8.298729 TCAGAAGATCTCTTACAGCTTCATTA 57.701 34.615 0.00 0.00 37.89 1.90
1776 2521 5.011943 GGTATCATGGCTCAGAAGATCTCTT 59.988 44.000 0.00 0.00 39.23 2.85
1779 2524 4.040217 GTGGTATCATGGCTCAGAAGATCT 59.960 45.833 0.00 0.00 0.00 2.75
1800 2545 3.667497 TCAAGCAGTCTAAGAGGTGTG 57.333 47.619 0.00 0.00 0.00 3.82
1824 2569 2.043227 GGAGAATGGAGTACCTCTGGG 58.957 57.143 0.00 0.00 37.04 4.45
1954 2701 1.577736 AGATGGTCCTTGTCCCTCAG 58.422 55.000 0.00 0.00 0.00 3.35
2002 2749 5.183228 TGTTCTCTAGAAATTTTAGCCCGG 58.817 41.667 0.00 0.00 35.58 5.73
2122 2869 5.011533 CCTGAGTATTTGATGGGACCTAGAG 59.988 48.000 0.00 0.00 0.00 2.43
2178 2925 6.150140 ACAAAATCATCTTCAGAAGGTAGTGC 59.850 38.462 10.42 0.00 0.00 4.40
2283 3031 5.579047 TGGAAAATCCATACCACACAAGAT 58.421 37.500 0.00 0.00 42.67 2.40
2355 3103 5.104527 TCTGTCCAGAAGAAGAACCAAGAAA 60.105 40.000 0.00 0.00 33.91 2.52
2356 3104 4.408921 TCTGTCCAGAAGAAGAACCAAGAA 59.591 41.667 0.00 0.00 33.91 2.52
2357 3105 3.967326 TCTGTCCAGAAGAAGAACCAAGA 59.033 43.478 0.00 0.00 33.91 3.02
2358 3106 4.342862 TCTGTCCAGAAGAAGAACCAAG 57.657 45.455 0.00 0.00 33.91 3.61
2359 3107 4.164221 AGTTCTGTCCAGAAGAAGAACCAA 59.836 41.667 9.90 0.00 46.93 3.67
2360 3108 3.711704 AGTTCTGTCCAGAAGAAGAACCA 59.288 43.478 9.90 0.00 46.93 3.67
2361 3109 4.344359 AGTTCTGTCCAGAAGAAGAACC 57.656 45.455 9.90 0.00 46.93 3.62
2501 3254 6.649141 AGAAGAAAACAAACCAAACAAACCTC 59.351 34.615 0.00 0.00 0.00 3.85
2527 3289 2.039879 ACCGGGATTACAAGTTCTTGCT 59.960 45.455 6.32 3.50 0.00 3.91
2657 3419 3.127376 ACACACGTCAAACTGTAAAACCC 59.873 43.478 0.00 0.00 0.00 4.11
2661 3423 3.864243 AGGACACACGTCAAACTGTAAA 58.136 40.909 0.00 0.00 44.54 2.01
2824 3664 5.780282 AGGGGGTTTTAATCTCCTTTTCAAG 59.220 40.000 0.00 0.00 0.00 3.02
2848 3689 2.102925 TGCATCGATTGATACAGAGGCA 59.897 45.455 0.00 0.00 46.00 4.75
2856 3697 0.798159 GCCGCATGCATCGATTGATA 59.202 50.000 19.57 0.00 40.77 2.15
2917 3758 1.491668 TAGCTTCCGGTGGCTTGATA 58.508 50.000 23.62 7.99 39.65 2.15
2935 3776 5.204409 ACGTTTTGTAGGTGTGAGTGATA 57.796 39.130 0.00 0.00 0.00 2.15
2950 3791 6.086241 CCACATTATCGAGTTTTGACGTTTTG 59.914 38.462 0.00 0.00 0.00 2.44
2951 3792 6.017770 TCCACATTATCGAGTTTTGACGTTTT 60.018 34.615 0.00 0.00 0.00 2.43
2952 3793 5.467399 TCCACATTATCGAGTTTTGACGTTT 59.533 36.000 0.00 0.00 0.00 3.60
2953 3794 4.992319 TCCACATTATCGAGTTTTGACGTT 59.008 37.500 0.00 0.00 0.00 3.99
2954 3795 4.562082 TCCACATTATCGAGTTTTGACGT 58.438 39.130 0.00 0.00 0.00 4.34
2955 3796 5.524511 TTCCACATTATCGAGTTTTGACG 57.475 39.130 0.00 0.00 0.00 4.35
2956 3797 5.739161 GCATTCCACATTATCGAGTTTTGAC 59.261 40.000 0.00 0.00 0.00 3.18
2957 3798 5.647658 AGCATTCCACATTATCGAGTTTTGA 59.352 36.000 0.00 0.00 0.00 2.69
3052 3900 1.226746 GTGCGCTTTAGGTCTGTTGT 58.773 50.000 9.73 0.00 0.00 3.32
3095 3948 0.719465 CGGTCCGATAATTATGGCGC 59.281 55.000 4.91 0.00 0.00 6.53
3117 3970 2.744760 TCTCTCTCCTGAAGATGGGTG 58.255 52.381 0.00 0.00 32.19 4.61
3235 4088 1.484240 GCTAGGCATGACAGGTCTTCT 59.516 52.381 0.00 0.00 0.00 2.85
3241 4094 0.463295 CAGGTGCTAGGCATGACAGG 60.463 60.000 0.00 0.00 41.91 4.00
3311 4164 0.868406 CACGAAGCTTTGGTGGAGAC 59.132 55.000 18.07 0.00 35.97 3.36
3343 4196 1.159664 AAGAGGCAGGAGGTGGAGT 59.840 57.895 0.00 0.00 0.00 3.85
3361 4214 1.669115 GGAGCAGCGCTGAAAGACA 60.669 57.895 40.21 0.00 39.88 3.41
3367 4220 2.110835 TTTGTGGAGCAGCGCTGA 59.889 55.556 40.21 17.52 39.88 4.26
3418 4271 1.375551 TTCAGATCGGACGATGACGA 58.624 50.000 12.40 2.91 43.85 4.20
3649 4505 1.997874 GGTGGTGGCCATCTCCTCT 60.998 63.158 26.72 0.00 35.28 3.69
3681 4537 3.639094 CCTTCGGTTAGATCTGATCTGGT 59.361 47.826 26.37 6.76 40.51 4.00
3695 4551 1.597027 CTTGACGGCACCTTCGGTT 60.597 57.895 0.00 0.00 31.02 4.44
3798 4803 4.082523 GCGTGTAGGGCAGCCTGA 62.083 66.667 12.43 0.00 0.00 3.86
3922 4956 3.237741 GGCGGGGATCCTCCTCTG 61.238 72.222 12.58 0.57 33.85 3.35
3962 5005 1.152030 ACCTTCTCTCACCCTGCCA 60.152 57.895 0.00 0.00 0.00 4.92
3965 5008 1.577736 ATCCACCTTCTCTCACCCTG 58.422 55.000 0.00 0.00 0.00 4.45
3969 5012 3.375699 TCCCTAATCCACCTTCTCTCAC 58.624 50.000 0.00 0.00 0.00 3.51
3974 5017 1.123928 CGCTCCCTAATCCACCTTCT 58.876 55.000 0.00 0.00 0.00 2.85
4000 5043 4.496336 CCACTGCCCAGCCCTAGC 62.496 72.222 0.00 0.00 40.32 3.42
4012 5055 2.423446 GGCCTAGATCCGCCACTG 59.577 66.667 10.43 0.00 45.01 3.66
4016 5059 3.631046 CTGGGGCCTAGATCCGCC 61.631 72.222 12.23 7.40 44.92 6.13
4017 5060 3.631046 CCTGGGGCCTAGATCCGC 61.631 72.222 19.80 9.95 37.10 5.54
4018 5061 2.122813 ACCTGGGGCCTAGATCCG 60.123 66.667 19.80 3.76 0.00 4.18
4019 5062 2.210711 CGACCTGGGGCCTAGATCC 61.211 68.421 19.80 5.82 0.00 3.36
4020 5063 2.210711 CCGACCTGGGGCCTAGATC 61.211 68.421 19.80 10.37 0.00 2.75
4021 5064 2.122813 CCGACCTGGGGCCTAGAT 60.123 66.667 19.80 0.00 0.00 1.98
4056 5099 0.603065 AAAGAAAATGGGCCTCACGC 59.397 50.000 4.53 0.00 0.00 5.34
4057 5100 1.613437 ACAAAGAAAATGGGCCTCACG 59.387 47.619 4.53 0.00 0.00 4.35
4058 5101 2.289010 CCACAAAGAAAATGGGCCTCAC 60.289 50.000 4.53 0.00 0.00 3.51
4059 5102 1.969923 CCACAAAGAAAATGGGCCTCA 59.030 47.619 4.53 0.00 0.00 3.86
4060 5103 1.276138 CCCACAAAGAAAATGGGCCTC 59.724 52.381 4.53 0.00 46.52 4.70
4061 5104 1.351076 CCCACAAAGAAAATGGGCCT 58.649 50.000 4.53 0.00 46.52 5.19
4062 5105 3.933879 CCCACAAAGAAAATGGGCC 57.066 52.632 0.00 0.00 46.52 5.80
4065 5108 3.056607 CCTACAGCCCACAAAGAAAATGG 60.057 47.826 0.00 0.00 0.00 3.16
4066 5109 3.056607 CCCTACAGCCCACAAAGAAAATG 60.057 47.826 0.00 0.00 0.00 2.32
4067 5110 3.165071 CCCTACAGCCCACAAAGAAAAT 58.835 45.455 0.00 0.00 0.00 1.82
4068 5111 2.175931 TCCCTACAGCCCACAAAGAAAA 59.824 45.455 0.00 0.00 0.00 2.29
4069 5112 1.777878 TCCCTACAGCCCACAAAGAAA 59.222 47.619 0.00 0.00 0.00 2.52
4070 5113 1.440618 TCCCTACAGCCCACAAAGAA 58.559 50.000 0.00 0.00 0.00 2.52
4071 5114 1.440618 TTCCCTACAGCCCACAAAGA 58.559 50.000 0.00 0.00 0.00 2.52
4072 5115 2.286365 TTTCCCTACAGCCCACAAAG 57.714 50.000 0.00 0.00 0.00 2.77
4073 5116 2.757894 TTTTCCCTACAGCCCACAAA 57.242 45.000 0.00 0.00 0.00 2.83
4074 5117 2.990740 ATTTTCCCTACAGCCCACAA 57.009 45.000 0.00 0.00 0.00 3.33
4075 5118 2.916934 AGTATTTTCCCTACAGCCCACA 59.083 45.455 0.00 0.00 0.00 4.17
4076 5119 3.279434 CAGTATTTTCCCTACAGCCCAC 58.721 50.000 0.00 0.00 0.00 4.61
4077 5120 2.916934 ACAGTATTTTCCCTACAGCCCA 59.083 45.455 0.00 0.00 0.00 5.36
4078 5121 3.646736 ACAGTATTTTCCCTACAGCCC 57.353 47.619 0.00 0.00 0.00 5.19
4079 5122 4.127907 GCTACAGTATTTTCCCTACAGCC 58.872 47.826 0.00 0.00 0.00 4.85
4080 5123 4.766375 TGCTACAGTATTTTCCCTACAGC 58.234 43.478 0.00 0.00 0.00 4.40
4081 5124 6.313905 CAGTTGCTACAGTATTTTCCCTACAG 59.686 42.308 0.13 0.00 0.00 2.74
4082 5125 6.170506 CAGTTGCTACAGTATTTTCCCTACA 58.829 40.000 0.13 0.00 0.00 2.74
4083 5126 5.064834 GCAGTTGCTACAGTATTTTCCCTAC 59.935 44.000 0.13 0.00 38.21 3.18
4084 5127 5.183228 GCAGTTGCTACAGTATTTTCCCTA 58.817 41.667 0.13 0.00 38.21 3.53
4085 5128 4.010349 GCAGTTGCTACAGTATTTTCCCT 58.990 43.478 0.13 0.00 38.21 4.20
4086 5129 4.357018 GCAGTTGCTACAGTATTTTCCC 57.643 45.455 0.13 0.00 38.21 3.97
4100 5143 3.058914 CCTTTGTGTACTGTAGCAGTTGC 60.059 47.826 7.11 0.00 42.59 4.17
4101 5144 3.498397 CCCTTTGTGTACTGTAGCAGTTG 59.502 47.826 7.11 0.00 42.59 3.16
4102 5145 3.496160 CCCCTTTGTGTACTGTAGCAGTT 60.496 47.826 7.11 0.00 42.59 3.16
4104 5147 2.615493 CCCCCTTTGTGTACTGTAGCAG 60.615 54.545 0.00 0.00 37.52 4.24
4105 5148 1.349688 CCCCCTTTGTGTACTGTAGCA 59.650 52.381 0.00 0.00 0.00 3.49
4106 5149 1.949079 GCCCCCTTTGTGTACTGTAGC 60.949 57.143 0.00 0.00 0.00 3.58
4107 5150 1.339727 GGCCCCCTTTGTGTACTGTAG 60.340 57.143 0.00 0.00 0.00 2.74
4108 5151 0.694196 GGCCCCCTTTGTGTACTGTA 59.306 55.000 0.00 0.00 0.00 2.74
4109 5152 1.458927 GGCCCCCTTTGTGTACTGT 59.541 57.895 0.00 0.00 0.00 3.55
4110 5153 1.304134 GGGCCCCCTTTGTGTACTG 60.304 63.158 12.23 0.00 0.00 2.74
4111 5154 2.902457 CGGGCCCCCTTTGTGTACT 61.902 63.158 18.66 0.00 0.00 2.73
4112 5155 2.360726 CGGGCCCCCTTTGTGTAC 60.361 66.667 18.66 0.00 0.00 2.90
4113 5156 3.653078 CCGGGCCCCCTTTGTGTA 61.653 66.667 18.66 0.00 0.00 2.90
4134 5177 4.891037 GATCCAGCCCAGCCCAGC 62.891 72.222 0.00 0.00 0.00 4.85
4135 5178 4.201122 GGATCCAGCCCAGCCCAG 62.201 72.222 6.95 0.00 0.00 4.45
4199 5242 1.449956 TGTAAATGGTACGCCCCGC 60.450 57.895 0.00 0.00 0.00 6.13
4200 5243 1.091197 GGTGTAAATGGTACGCCCCG 61.091 60.000 5.01 0.00 41.05 5.73
4201 5244 0.253894 AGGTGTAAATGGTACGCCCC 59.746 55.000 11.51 0.00 46.34 5.80
4202 5245 2.118313 AAGGTGTAAATGGTACGCCC 57.882 50.000 11.51 0.00 46.34 6.13
4203 5246 3.865446 ACTAAGGTGTAAATGGTACGCC 58.135 45.455 7.82 7.82 45.72 5.68
4204 5247 4.565564 CAGACTAAGGTGTAAATGGTACGC 59.434 45.833 0.00 0.00 0.00 4.42
4205 5248 5.957798 TCAGACTAAGGTGTAAATGGTACG 58.042 41.667 0.00 0.00 0.00 3.67
4206 5249 7.384477 AGTTCAGACTAAGGTGTAAATGGTAC 58.616 38.462 0.00 0.00 33.32 3.34
4207 5250 7.549147 AGTTCAGACTAAGGTGTAAATGGTA 57.451 36.000 0.00 0.00 33.32 3.25
4208 5251 6.435292 AGTTCAGACTAAGGTGTAAATGGT 57.565 37.500 0.00 0.00 33.32 3.55
4209 5252 9.449719 AAATAGTTCAGACTAAGGTGTAAATGG 57.550 33.333 0.00 0.00 41.48 3.16
4212 5255 9.841295 ACAAAATAGTTCAGACTAAGGTGTAAA 57.159 29.630 0.00 0.00 41.48 2.01
4213 5256 9.841295 AACAAAATAGTTCAGACTAAGGTGTAA 57.159 29.630 0.00 0.00 41.48 2.41
4214 5257 9.485206 GAACAAAATAGTTCAGACTAAGGTGTA 57.515 33.333 0.00 0.00 45.53 2.90
4215 5258 8.379457 GAACAAAATAGTTCAGACTAAGGTGT 57.621 34.615 0.00 0.00 45.53 4.16
4235 5278 1.321474 CCTTGCTGCAAGAGGAACAA 58.679 50.000 36.69 4.35 43.42 2.83
4363 5425 3.252701 CCTGGATTGCTCAATATGAGTGC 59.747 47.826 8.97 0.00 45.94 4.40
4403 5465 1.202770 ACTACCTCCTTTGCGCAAGTT 60.203 47.619 23.68 2.12 41.68 2.66
4502 5564 3.191371 ACTCCGGCAATTTCAGTTCATTC 59.809 43.478 0.00 0.00 0.00 2.67
4552 5614 6.114187 TCTGTGCATCCTTCTCTCTTAAAA 57.886 37.500 0.00 0.00 0.00 1.52
4577 5639 7.095695 TCAAGTGAGGAAAAGTACCTTTTTG 57.904 36.000 3.69 0.00 42.72 2.44
4598 5660 6.947464 TGTTACAAGGGTTGGAAAATTTCAA 58.053 32.000 8.09 0.00 34.72 2.69
4619 5681 3.317993 GTGGTCCTGCAATTAACACTGTT 59.682 43.478 0.00 0.00 0.00 3.16
4639 5701 3.655486 ACATGGTGCATGAAATTGTGTG 58.345 40.909 0.00 0.00 43.81 3.82
4640 5702 4.321899 GGTACATGGTGCATGAAATTGTGT 60.322 41.667 0.00 0.00 43.81 3.72
4665 5727 7.440523 TTTTCCAGCTGAAAGAAGAATAGAC 57.559 36.000 17.39 0.00 43.57 2.59
4748 5810 1.792949 GTCGTCAGCGTCACTTTTCAT 59.207 47.619 0.00 0.00 39.49 2.57
4759 5821 2.108514 ATTGGCATGGTCGTCAGCG 61.109 57.895 0.00 0.00 39.92 5.18
4784 5846 0.324943 AGTACCCATCGCTTTGCAGT 59.675 50.000 0.00 0.00 0.00 4.40
5035 6097 5.665916 AGATCCATTGTTTGATTGGGAAC 57.334 39.130 0.00 0.00 0.00 3.62
5037 6099 4.711355 GGAAGATCCATTGTTTGATTGGGA 59.289 41.667 0.00 0.00 36.28 4.37
5064 6126 1.029681 GCTTCCGAACCCTTGTTTGT 58.970 50.000 0.00 0.00 34.54 2.83
5553 6615 6.034591 CGTTATACACCTCTTTACAGTCAGG 58.965 44.000 0.00 0.00 0.00 3.86
5756 6818 5.810074 ACTGAAGTGTTATTGTTTTGGCAAC 59.190 36.000 0.00 0.00 0.00 4.17
5850 6972 2.622436 GTGCTCATGTCCTTGACTACC 58.378 52.381 0.00 0.00 33.15 3.18
5902 7024 0.178903 TCCCTGGCTACTTCACCACT 60.179 55.000 0.00 0.00 0.00 4.00
5918 7040 0.038166 TTCATTGGCACTCCACTCCC 59.962 55.000 0.00 0.00 43.33 4.30
5976 7098 1.879796 GCCTTCTGTTCCAGGTCTGTG 60.880 57.143 0.00 0.00 32.06 3.66
6057 7179 4.754322 CAGTTAAAGCCCACAGTTTGTTT 58.246 39.130 0.00 0.00 0.00 2.83
6062 7265 0.951558 CGCAGTTAAAGCCCACAGTT 59.048 50.000 0.00 0.00 0.00 3.16
6066 7269 1.161843 TTAGCGCAGTTAAAGCCCAC 58.838 50.000 11.47 0.00 28.24 4.61
6071 7274 3.866910 TCCCGTTATTAGCGCAGTTAAAG 59.133 43.478 11.47 6.21 36.65 1.85
6106 7309 6.583562 GGCACCAGTATACTAGTCAATTCTT 58.416 40.000 4.74 0.00 0.00 2.52
6183 7386 3.440522 GGGAGATGGTCCTTTTCGAAAAG 59.559 47.826 33.84 33.84 46.06 2.27
6186 7389 1.280998 GGGGAGATGGTCCTTTTCGAA 59.719 52.381 0.00 0.00 46.06 3.71
6187 7390 0.909623 GGGGAGATGGTCCTTTTCGA 59.090 55.000 0.00 0.00 46.06 3.71
6188 7391 0.912486 AGGGGAGATGGTCCTTTTCG 59.088 55.000 0.00 0.00 46.06 3.46
6197 7400 1.694133 GCAGAGGTCAGGGGAGATGG 61.694 65.000 0.00 0.00 0.00 3.51
6198 7401 0.979709 TGCAGAGGTCAGGGGAGATG 60.980 60.000 0.00 0.00 0.00 2.90
6203 7406 0.107312 CTTGATGCAGAGGTCAGGGG 60.107 60.000 0.00 0.00 0.00 4.79
6209 7412 3.076104 CATCGCTTGATGCAGAGGT 57.924 52.632 0.00 0.00 42.78 3.85
6293 7496 3.508762 GAACAATCTGCTGCTGAAATGG 58.491 45.455 21.04 11.77 0.00 3.16
6375 7578 4.856607 GCGAAGGAGACTCGGCGG 62.857 72.222 7.21 0.00 42.68 6.13
6433 7636 1.948508 GCAATCGTGCCACAACTCA 59.051 52.632 0.00 0.00 45.68 3.41
6448 7651 0.533308 GTACCAGGGACACGTTGCAA 60.533 55.000 0.00 0.00 0.00 4.08
6604 7807 3.134574 TGACATATTTACCCGGATGCC 57.865 47.619 0.73 0.00 0.00 4.40
6631 7843 3.369052 CGAAACCATACTGCTACCCTGAA 60.369 47.826 0.00 0.00 0.00 3.02
6632 7844 2.167693 CGAAACCATACTGCTACCCTGA 59.832 50.000 0.00 0.00 0.00 3.86
6640 7852 2.415512 GGACAGTTCGAAACCATACTGC 59.584 50.000 11.61 5.83 41.22 4.40
6654 7866 6.777580 ACTTAGGTTTCAATTCATGGACAGTT 59.222 34.615 0.00 0.00 0.00 3.16
6659 7871 8.877864 AATGTACTTAGGTTTCAATTCATGGA 57.122 30.769 0.00 0.00 0.00 3.41
6672 7884 7.463431 TCCACCAAAACATAATGTACTTAGGT 58.537 34.615 0.00 0.00 35.93 3.08
6683 7895 8.670135 CGTCAGTATTATTCCACCAAAACATAA 58.330 33.333 0.00 0.00 0.00 1.90
6693 7905 3.793559 ACCAGCGTCAGTATTATTCCAC 58.206 45.455 0.00 0.00 0.00 4.02
6874 8086 4.457496 CTCCATGTCAGCCCGCGT 62.457 66.667 4.92 0.00 0.00 6.01
7046 8258 3.810623 ACCAAACCCTTCTACCTCCATA 58.189 45.455 0.00 0.00 0.00 2.74
7116 8330 0.802494 GTGAAACCAATCGATGCGGT 59.198 50.000 12.83 12.83 33.32 5.68
7124 8338 3.654414 AGAGACACGAGTGAAACCAATC 58.346 45.455 10.50 0.00 37.80 2.67
7128 8342 2.557490 AGGTAGAGACACGAGTGAAACC 59.443 50.000 10.50 9.02 37.80 3.27
7138 8352 6.679327 AAAACAAGAACAAGGTAGAGACAC 57.321 37.500 0.00 0.00 0.00 3.67
7142 8356 6.136541 AGCAAAAACAAGAACAAGGTAGAG 57.863 37.500 0.00 0.00 0.00 2.43
7146 8360 4.690280 CACAAGCAAAAACAAGAACAAGGT 59.310 37.500 0.00 0.00 0.00 3.50
7147 8361 4.690280 ACACAAGCAAAAACAAGAACAAGG 59.310 37.500 0.00 0.00 0.00 3.61
7148 8362 5.844301 ACACAAGCAAAAACAAGAACAAG 57.156 34.783 0.00 0.00 0.00 3.16
7149 8363 7.386299 ACAATACACAAGCAAAAACAAGAACAA 59.614 29.630 0.00 0.00 0.00 2.83
7150 8364 6.870965 ACAATACACAAGCAAAAACAAGAACA 59.129 30.769 0.00 0.00 0.00 3.18
7151 8365 7.148656 ACACAATACACAAGCAAAAACAAGAAC 60.149 33.333 0.00 0.00 0.00 3.01
7152 8366 6.870965 ACACAATACACAAGCAAAAACAAGAA 59.129 30.769 0.00 0.00 0.00 2.52
7153 8367 6.309980 CACACAATACACAAGCAAAAACAAGA 59.690 34.615 0.00 0.00 0.00 3.02
7158 8372 3.549471 CGCACACAATACACAAGCAAAAA 59.451 39.130 0.00 0.00 0.00 1.94
7170 8384 1.154814 ACACGCACACGCACACAATA 61.155 50.000 0.00 0.00 45.53 1.90
7185 8399 1.324435 CACACAGGAATATCGCACACG 59.676 52.381 0.00 0.00 42.01 4.49
7226 8446 5.637006 AGTCAGAACTGTACTGTCTGATC 57.363 43.478 23.90 19.47 39.27 2.92
7266 8486 2.111460 CGAACCCCCACAAACGGA 59.889 61.111 0.00 0.00 0.00 4.69
7279 8499 4.657436 AAGATGGACTAGATGGACGAAC 57.343 45.455 0.00 0.00 0.00 3.95
7304 8524 3.057946 GCTTGACTTCTCATTTGGGACAC 60.058 47.826 0.00 0.00 39.29 3.67
7305 8525 3.149196 GCTTGACTTCTCATTTGGGACA 58.851 45.455 0.00 0.00 0.00 4.02
7306 8526 3.149196 TGCTTGACTTCTCATTTGGGAC 58.851 45.455 0.00 0.00 0.00 4.46
7307 8527 3.507162 TGCTTGACTTCTCATTTGGGA 57.493 42.857 0.00 0.00 0.00 4.37
7308 8528 4.796038 ATTGCTTGACTTCTCATTTGGG 57.204 40.909 0.00 0.00 0.00 4.12
7309 8529 7.541162 TCATTATTGCTTGACTTCTCATTTGG 58.459 34.615 0.00 0.00 0.00 3.28
7314 8534 6.053632 TCCTCATTATTGCTTGACTTCTCA 57.946 37.500 0.00 0.00 0.00 3.27
7316 8536 6.944862 AGTTTCCTCATTATTGCTTGACTTCT 59.055 34.615 0.00 0.00 0.00 2.85
7333 8553 1.143073 AGGTGTGGGTCAAGTTTCCTC 59.857 52.381 0.00 0.00 0.00 3.71
7337 8557 1.283613 TGTCAGGTGTGGGTCAAGTTT 59.716 47.619 0.00 0.00 0.00 2.66
7351 8571 3.562182 ACTACCAAACCCTTTTGTCAGG 58.438 45.455 0.00 0.00 40.61 3.86
7357 8577 5.917545 TCCTTAGACTACCAAACCCTTTT 57.082 39.130 0.00 0.00 0.00 2.27
7474 8695 5.069781 GCTAGGTGGTCTACAGATCTGAATT 59.930 44.000 29.27 9.63 0.00 2.17
7615 8836 2.621998 GTTCTAGTGCGCTGGTCCTATA 59.378 50.000 10.80 0.00 0.00 1.31
7631 8853 1.001068 TCATCGGCGGTTGTTGTTCTA 59.999 47.619 7.21 0.00 0.00 2.10
7716 8941 0.527565 CTTTGGTGGATTTGCTCGGG 59.472 55.000 0.00 0.00 0.00 5.14
7778 9003 2.758327 TCCGGCGGTGCATCTAGT 60.758 61.111 27.32 0.00 0.00 2.57
7828 9053 4.162690 GGCGACGGCTCCCTGAAT 62.163 66.667 15.00 0.00 39.81 2.57
7859 9084 5.131475 TCTTGTTAGGGTTTGTGTCCTACTT 59.869 40.000 0.00 0.00 35.56 2.24
7862 9087 4.409574 TGTCTTGTTAGGGTTTGTGTCCTA 59.590 41.667 0.00 0.00 34.75 2.94
7994 9219 0.905357 GCTAGGGTTTCTGCCTCTCA 59.095 55.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.