Multiple sequence alignment - TraesCS7A01G270500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G270500 chr7A 100.000 4278 0 0 1 4278 278452111 278456388 0.000000e+00 7901
1 TraesCS7A01G270500 chr7A 91.156 147 9 1 1367 1509 278453285 278453431 3.370000e-46 196
2 TraesCS7A01G270500 chr7A 91.156 147 9 1 1175 1321 278453477 278453619 3.370000e-46 196
3 TraesCS7A01G270500 chr7B 91.722 3757 158 54 591 4278 236333180 236329508 0.000000e+00 5073
4 TraesCS7A01G270500 chr7B 89.931 288 28 1 4 290 236343939 236343652 1.880000e-98 370
5 TraesCS7A01G270500 chr7B 90.541 148 9 2 1367 1509 236332625 236332478 1.570000e-44 191
6 TraesCS7A01G270500 chr7B 92.000 125 5 1 1175 1294 236332438 236332314 2.050000e-38 171
7 TraesCS7A01G270500 chr7D 92.408 3293 145 38 592 3838 257111724 257108491 0.000000e+00 4599
8 TraesCS7A01G270500 chr7D 93.833 454 22 6 3827 4278 257107938 257107489 0.000000e+00 678
9 TraesCS7A01G270500 chr7D 92.414 145 11 0 1175 1319 257110943 257110799 1.560000e-49 207
10 TraesCS7A01G270500 chr7D 91.837 147 8 1 1367 1509 257111129 257110983 7.250000e-48 202
11 TraesCS7A01G270500 chr3D 82.014 278 38 7 311 582 508755 509026 4.300000e-55 226
12 TraesCS7A01G270500 chr6D 83.673 245 27 6 307 544 354104089 354104327 7.200000e-53 219
13 TraesCS7A01G270500 chr3A 82.988 241 23 9 311 544 650043320 650043091 7.250000e-48 202
14 TraesCS7A01G270500 chr3A 81.275 251 24 10 293 543 73628298 73628525 9.450000e-42 182
15 TraesCS7A01G270500 chr3A 79.181 293 31 12 293 578 73627626 73627895 4.400000e-40 176
16 TraesCS7A01G270500 chr3A 80.162 247 27 8 297 543 73630996 73631220 9.520000e-37 165
17 TraesCS7A01G270500 chr3A 87.218 133 7 5 293 420 73621047 73621174 4.460000e-30 143
18 TraesCS7A01G270500 chr3A 86.777 121 10 3 309 429 73620414 73620528 3.470000e-26 130
19 TraesCS7A01G270500 chr3A 77.966 236 27 13 309 543 73631710 73631921 1.620000e-24 124
20 TraesCS7A01G270500 chr3A 78.319 226 21 7 318 543 73619017 73619214 2.090000e-23 121
21 TraesCS7A01G270500 chr1B 82.353 221 32 4 318 537 546158029 546158243 7.310000e-43 185
22 TraesCS7A01G270500 chr4D 89.831 118 12 0 312 429 14939126 14939009 7.410000e-33 152
23 TraesCS7A01G270500 chr6A 80.198 202 30 4 309 510 536020275 536020466 4.460000e-30 143
24 TraesCS7A01G270500 chr2A 86.555 119 11 2 425 543 774793442 774793329 4.490000e-25 126
25 TraesCS7A01G270500 chr4B 83.969 131 8 5 450 580 24915042 24915159 3.500000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G270500 chr7A 278452111 278456388 4277 False 2764.333333 7901 94.104 1 4278 3 chr7A.!!$F1 4277
1 TraesCS7A01G270500 chr7B 236329508 236333180 3672 True 1811.666667 5073 91.421 591 4278 3 chr7B.!!$R2 3687
2 TraesCS7A01G270500 chr7D 257107489 257111724 4235 True 1421.500000 4599 92.623 592 4278 4 chr7D.!!$R1 3686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.029567 CCGTAAAAACCTGCGTGCAA 59.970 50.0 0.0 0.0 0.0 4.08 F
340 341 0.037975 GACCAAGCCCGACGTAGAAA 60.038 55.0 0.0 0.0 0.0 2.52 F
347 348 0.104304 CCCGACGTAGAAATCCCAGG 59.896 60.0 0.0 0.0 0.0 4.45 F
786 795 0.107017 CTCAATCCCACGCTTCCCAT 60.107 55.0 0.0 0.0 0.0 4.00 F
2274 2305 0.107456 CCATCGTTCCCTGCTGCTAT 59.893 55.0 0.0 0.0 0.0 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1356 1375 0.038166 GCAACACTCCATTCCCTCCA 59.962 55.0 0.00 0.0 0.00 3.86 R
1498 1526 0.100146 CCGAGCCTACAGTACGGTTC 59.900 60.0 3.39 0.0 38.97 3.62 R
2181 2212 0.524816 GCGACGCCACGAAGAAGATA 60.525 55.0 9.14 0.0 35.09 1.98 R
2347 2382 0.598065 GTTTGTCATGTGGGGAGTGC 59.402 55.0 0.00 0.0 0.00 4.40 R
3902 4537 0.873312 ATGCTACGCTGCTGTCATCG 60.873 55.0 0.00 0.0 37.78 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.666876 TCCCTAACCCAATCCCGAT 57.333 52.632 0.00 0.00 0.00 4.18
19 20 2.799282 TCCCTAACCCAATCCCGATA 57.201 50.000 0.00 0.00 0.00 2.92
20 21 2.616524 TCCCTAACCCAATCCCGATAG 58.383 52.381 0.00 0.00 0.00 2.08
32 33 3.993103 CGATAGGAACGTCCGTGC 58.007 61.111 0.00 0.00 42.75 5.34
33 34 1.588139 CGATAGGAACGTCCGTGCC 60.588 63.158 8.88 8.88 44.28 5.01
37 38 2.126031 GGAACGTCCGTGCCTCTC 60.126 66.667 9.66 0.00 40.71 3.20
38 39 2.504244 GAACGTCCGTGCCTCTCG 60.504 66.667 0.00 0.00 0.00 4.04
39 40 2.974489 GAACGTCCGTGCCTCTCGA 61.974 63.158 0.00 0.00 0.00 4.04
40 41 2.852431 GAACGTCCGTGCCTCTCGAG 62.852 65.000 5.93 5.93 0.00 4.04
41 42 4.838486 CGTCCGTGCCTCTCGAGC 62.838 72.222 7.81 0.00 0.00 5.03
42 43 3.749064 GTCCGTGCCTCTCGAGCA 61.749 66.667 7.81 0.00 38.08 4.26
43 44 3.443925 TCCGTGCCTCTCGAGCAG 61.444 66.667 7.81 6.24 41.87 4.24
44 45 3.443925 CCGTGCCTCTCGAGCAGA 61.444 66.667 7.81 0.00 41.87 4.26
46 47 2.202730 GTGCCTCTCGAGCAGAGC 60.203 66.667 7.81 8.13 46.90 4.09
47 48 3.456365 TGCCTCTCGAGCAGAGCC 61.456 66.667 7.81 0.00 46.90 4.70
48 49 3.456365 GCCTCTCGAGCAGAGCCA 61.456 66.667 7.81 0.00 46.90 4.75
49 50 2.493973 CCTCTCGAGCAGAGCCAC 59.506 66.667 7.81 0.00 46.90 5.01
50 51 2.101965 CTCTCGAGCAGAGCCACG 59.898 66.667 7.81 0.00 46.44 4.94
51 52 4.121669 TCTCGAGCAGAGCCACGC 62.122 66.667 7.81 0.00 46.44 5.34
52 53 4.426112 CTCGAGCAGAGCCACGCA 62.426 66.667 0.00 0.00 40.54 5.24
53 54 4.724602 TCGAGCAGAGCCACGCAC 62.725 66.667 0.00 0.00 0.00 5.34
54 55 4.731612 CGAGCAGAGCCACGCACT 62.732 66.667 0.00 0.00 0.00 4.40
55 56 2.573869 GAGCAGAGCCACGCACTA 59.426 61.111 0.00 0.00 0.00 2.74
56 57 1.518133 GAGCAGAGCCACGCACTAG 60.518 63.158 0.00 0.00 0.00 2.57
57 58 1.938657 GAGCAGAGCCACGCACTAGA 61.939 60.000 0.00 0.00 0.00 2.43
58 59 1.807573 GCAGAGCCACGCACTAGAC 60.808 63.158 0.00 0.00 0.00 2.59
59 60 1.153745 CAGAGCCACGCACTAGACC 60.154 63.158 0.00 0.00 0.00 3.85
60 61 1.606601 AGAGCCACGCACTAGACCA 60.607 57.895 0.00 0.00 0.00 4.02
61 62 1.185618 AGAGCCACGCACTAGACCAA 61.186 55.000 0.00 0.00 0.00 3.67
62 63 1.004918 AGCCACGCACTAGACCAAC 60.005 57.895 0.00 0.00 0.00 3.77
63 64 2.033194 GCCACGCACTAGACCAACC 61.033 63.158 0.00 0.00 0.00 3.77
64 65 1.736645 CCACGCACTAGACCAACCG 60.737 63.158 0.00 0.00 0.00 4.44
65 66 1.287815 CACGCACTAGACCAACCGA 59.712 57.895 0.00 0.00 0.00 4.69
66 67 1.007336 CACGCACTAGACCAACCGAC 61.007 60.000 0.00 0.00 0.00 4.79
67 68 1.287815 CGCACTAGACCAACCGACA 59.712 57.895 0.00 0.00 0.00 4.35
68 69 0.319211 CGCACTAGACCAACCGACAA 60.319 55.000 0.00 0.00 0.00 3.18
69 70 1.429463 GCACTAGACCAACCGACAAG 58.571 55.000 0.00 0.00 0.00 3.16
70 71 1.429463 CACTAGACCAACCGACAAGC 58.571 55.000 0.00 0.00 0.00 4.01
71 72 1.000955 CACTAGACCAACCGACAAGCT 59.999 52.381 0.00 0.00 0.00 3.74
72 73 1.692519 ACTAGACCAACCGACAAGCTT 59.307 47.619 0.00 0.00 0.00 3.74
73 74 2.069273 CTAGACCAACCGACAAGCTTG 58.931 52.381 24.84 24.84 0.00 4.01
74 75 1.166531 AGACCAACCGACAAGCTTGC 61.167 55.000 26.27 17.09 0.00 4.01
75 76 1.152963 ACCAACCGACAAGCTTGCT 60.153 52.632 26.27 13.39 0.00 3.91
76 77 0.107831 ACCAACCGACAAGCTTGCTA 59.892 50.000 26.27 0.00 0.00 3.49
77 78 0.798776 CCAACCGACAAGCTTGCTAG 59.201 55.000 26.27 16.32 0.00 3.42
87 88 4.864334 CTTGCTAGCAGGGCGGGG 62.864 72.222 18.64 1.15 0.00 5.73
92 93 4.815973 TAGCAGGGCGGGGGTGAT 62.816 66.667 0.00 0.00 0.00 3.06
95 96 4.489771 CAGGGCGGGGGTGATGAC 62.490 72.222 0.00 0.00 0.00 3.06
105 106 3.799755 GTGATGACCGGCGGCAAC 61.800 66.667 28.71 22.35 0.00 4.17
106 107 4.321966 TGATGACCGGCGGCAACA 62.322 61.111 28.71 24.58 0.00 3.33
107 108 3.499737 GATGACCGGCGGCAACAG 61.500 66.667 28.71 0.40 0.00 3.16
108 109 4.329545 ATGACCGGCGGCAACAGT 62.330 61.111 28.71 4.60 0.00 3.55
109 110 4.980805 TGACCGGCGGCAACAGTC 62.981 66.667 28.71 15.67 0.00 3.51
119 120 4.003788 CAACAGTCGGCGGGGAGT 62.004 66.667 7.21 0.00 0.00 3.85
120 121 3.692406 AACAGTCGGCGGGGAGTC 61.692 66.667 7.21 0.00 0.00 3.36
141 142 4.410400 CGGGTGGGTGGAGCTTCC 62.410 72.222 0.00 0.00 36.96 3.46
142 143 2.936032 GGGTGGGTGGAGCTTCCT 60.936 66.667 0.00 0.00 37.46 3.36
143 144 2.671682 GGTGGGTGGAGCTTCCTC 59.328 66.667 0.00 0.00 37.46 3.71
144 145 2.224159 GGTGGGTGGAGCTTCCTCA 61.224 63.158 0.00 0.00 39.96 3.86
145 146 1.298014 GTGGGTGGAGCTTCCTCAG 59.702 63.158 0.00 0.00 39.96 3.35
156 157 3.689309 GCTTCCTCAGCTTTATTCAGC 57.311 47.619 0.00 0.00 46.27 4.26
157 158 2.031437 GCTTCCTCAGCTTTATTCAGCG 59.969 50.000 0.00 0.00 46.27 5.18
158 159 3.265791 CTTCCTCAGCTTTATTCAGCGT 58.734 45.455 0.00 0.00 45.24 5.07
159 160 3.334583 TCCTCAGCTTTATTCAGCGTT 57.665 42.857 0.00 0.00 45.24 4.84
160 161 4.465632 TCCTCAGCTTTATTCAGCGTTA 57.534 40.909 0.00 0.00 45.24 3.18
161 162 5.023533 TCCTCAGCTTTATTCAGCGTTAT 57.976 39.130 0.00 0.00 45.24 1.89
162 163 6.156748 TCCTCAGCTTTATTCAGCGTTATA 57.843 37.500 0.00 0.00 45.24 0.98
163 164 6.578944 TCCTCAGCTTTATTCAGCGTTATAA 58.421 36.000 0.00 0.00 45.24 0.98
164 165 6.479001 TCCTCAGCTTTATTCAGCGTTATAAC 59.521 38.462 5.47 5.47 45.24 1.89
165 166 6.480320 CCTCAGCTTTATTCAGCGTTATAACT 59.520 38.462 13.56 0.00 45.24 2.24
166 167 7.011482 CCTCAGCTTTATTCAGCGTTATAACTT 59.989 37.037 13.56 0.00 45.24 2.66
167 168 8.263940 TCAGCTTTATTCAGCGTTATAACTTT 57.736 30.769 13.56 0.00 45.24 2.66
168 169 9.373603 TCAGCTTTATTCAGCGTTATAACTTTA 57.626 29.630 13.56 0.00 45.24 1.85
178 179 9.199982 TCAGCGTTATAACTTTATATAAGTGGC 57.800 33.333 13.56 4.90 30.46 5.01
179 180 8.984764 CAGCGTTATAACTTTATATAAGTGGCA 58.015 33.333 13.56 0.00 30.46 4.92
180 181 9.204570 AGCGTTATAACTTTATATAAGTGGCAG 57.795 33.333 13.56 0.00 30.46 4.85
181 182 7.955864 GCGTTATAACTTTATATAAGTGGCAGC 59.044 37.037 13.56 0.09 30.46 5.25
182 183 8.160342 CGTTATAACTTTATATAAGTGGCAGCG 58.840 37.037 13.56 0.00 30.46 5.18
183 184 8.985805 GTTATAACTTTATATAAGTGGCAGCGT 58.014 33.333 8.41 0.00 30.46 5.07
184 185 5.986004 AACTTTATATAAGTGGCAGCGTC 57.014 39.130 0.00 0.00 0.00 5.19
185 186 5.277857 ACTTTATATAAGTGGCAGCGTCT 57.722 39.130 0.00 0.00 0.00 4.18
186 187 6.401047 ACTTTATATAAGTGGCAGCGTCTA 57.599 37.500 0.00 0.00 0.00 2.59
187 188 6.812998 ACTTTATATAAGTGGCAGCGTCTAA 58.187 36.000 0.00 0.00 0.00 2.10
188 189 7.442656 ACTTTATATAAGTGGCAGCGTCTAAT 58.557 34.615 0.00 0.00 0.00 1.73
189 190 7.931948 ACTTTATATAAGTGGCAGCGTCTAATT 59.068 33.333 0.00 0.00 0.00 1.40
190 191 8.671384 TTTATATAAGTGGCAGCGTCTAATTT 57.329 30.769 0.00 0.00 0.00 1.82
191 192 9.767228 TTTATATAAGTGGCAGCGTCTAATTTA 57.233 29.630 0.00 0.00 0.00 1.40
192 193 9.938280 TTATATAAGTGGCAGCGTCTAATTTAT 57.062 29.630 0.00 0.00 0.00 1.40
193 194 6.787085 ATAAGTGGCAGCGTCTAATTTATC 57.213 37.500 0.00 0.00 0.00 1.75
194 195 3.467803 AGTGGCAGCGTCTAATTTATCC 58.532 45.455 0.00 0.00 0.00 2.59
195 196 2.548480 GTGGCAGCGTCTAATTTATCCC 59.452 50.000 0.00 0.00 0.00 3.85
196 197 2.438021 TGGCAGCGTCTAATTTATCCCT 59.562 45.455 0.00 0.00 0.00 4.20
197 198 3.118038 TGGCAGCGTCTAATTTATCCCTT 60.118 43.478 0.00 0.00 0.00 3.95
198 199 3.498777 GGCAGCGTCTAATTTATCCCTTC 59.501 47.826 0.00 0.00 0.00 3.46
199 200 3.498777 GCAGCGTCTAATTTATCCCTTCC 59.501 47.826 0.00 0.00 0.00 3.46
200 201 4.743955 GCAGCGTCTAATTTATCCCTTCCT 60.744 45.833 0.00 0.00 0.00 3.36
201 202 5.368989 CAGCGTCTAATTTATCCCTTCCTT 58.631 41.667 0.00 0.00 0.00 3.36
202 203 5.467063 CAGCGTCTAATTTATCCCTTCCTTC 59.533 44.000 0.00 0.00 0.00 3.46
203 204 4.755629 GCGTCTAATTTATCCCTTCCTTCC 59.244 45.833 0.00 0.00 0.00 3.46
204 205 5.306394 CGTCTAATTTATCCCTTCCTTCCC 58.694 45.833 0.00 0.00 0.00 3.97
205 206 5.163237 CGTCTAATTTATCCCTTCCTTCCCA 60.163 44.000 0.00 0.00 0.00 4.37
206 207 6.634039 CGTCTAATTTATCCCTTCCTTCCCAA 60.634 42.308 0.00 0.00 0.00 4.12
207 208 7.298374 GTCTAATTTATCCCTTCCTTCCCAAT 58.702 38.462 0.00 0.00 0.00 3.16
208 209 7.785028 GTCTAATTTATCCCTTCCTTCCCAATT 59.215 37.037 0.00 0.00 0.00 2.32
209 210 8.351414 TCTAATTTATCCCTTCCTTCCCAATTT 58.649 33.333 0.00 0.00 0.00 1.82
210 211 7.437713 AATTTATCCCTTCCTTCCCAATTTC 57.562 36.000 0.00 0.00 0.00 2.17
211 212 5.544441 TTATCCCTTCCTTCCCAATTTCA 57.456 39.130 0.00 0.00 0.00 2.69
212 213 3.456380 TCCCTTCCTTCCCAATTTCAG 57.544 47.619 0.00 0.00 0.00 3.02
213 214 2.993146 TCCCTTCCTTCCCAATTTCAGA 59.007 45.455 0.00 0.00 0.00 3.27
214 215 3.010584 TCCCTTCCTTCCCAATTTCAGAG 59.989 47.826 0.00 0.00 0.00 3.35
215 216 3.359950 CCTTCCTTCCCAATTTCAGAGG 58.640 50.000 0.00 0.00 0.00 3.69
216 217 3.245407 CCTTCCTTCCCAATTTCAGAGGT 60.245 47.826 0.00 0.00 0.00 3.85
217 218 3.439857 TCCTTCCCAATTTCAGAGGTG 57.560 47.619 0.00 0.00 0.00 4.00
218 219 1.821136 CCTTCCCAATTTCAGAGGTGC 59.179 52.381 0.00 0.00 0.00 5.01
219 220 1.470098 CTTCCCAATTTCAGAGGTGCG 59.530 52.381 0.00 0.00 0.00 5.34
220 221 0.322456 TCCCAATTTCAGAGGTGCGG 60.322 55.000 0.00 0.00 0.00 5.69
221 222 1.508088 CCAATTTCAGAGGTGCGGC 59.492 57.895 0.00 0.00 0.00 6.53
222 223 1.508088 CAATTTCAGAGGTGCGGCC 59.492 57.895 0.00 0.00 37.58 6.13
223 224 1.678970 AATTTCAGAGGTGCGGCCC 60.679 57.895 0.00 0.00 38.26 5.80
224 225 2.142292 AATTTCAGAGGTGCGGCCCT 62.142 55.000 9.39 9.39 38.26 5.19
237 238 4.570874 GCCCTCGCCTCCCCAATC 62.571 72.222 0.00 0.00 0.00 2.67
238 239 2.770048 CCCTCGCCTCCCCAATCT 60.770 66.667 0.00 0.00 0.00 2.40
239 240 1.459539 CCCTCGCCTCCCCAATCTA 60.460 63.158 0.00 0.00 0.00 1.98
240 241 1.054406 CCCTCGCCTCCCCAATCTAA 61.054 60.000 0.00 0.00 0.00 2.10
241 242 1.059913 CCTCGCCTCCCCAATCTAAT 58.940 55.000 0.00 0.00 0.00 1.73
242 243 1.271054 CCTCGCCTCCCCAATCTAATG 60.271 57.143 0.00 0.00 0.00 1.90
243 244 1.694150 CTCGCCTCCCCAATCTAATGA 59.306 52.381 0.00 0.00 0.00 2.57
244 245 2.304180 CTCGCCTCCCCAATCTAATGAT 59.696 50.000 0.00 0.00 33.70 2.45
245 246 2.303022 TCGCCTCCCCAATCTAATGATC 59.697 50.000 0.00 0.00 31.51 2.92
246 247 2.616510 CGCCTCCCCAATCTAATGATCC 60.617 54.545 0.00 0.00 31.51 3.36
247 248 2.291217 GCCTCCCCAATCTAATGATCCC 60.291 54.545 0.00 0.00 31.51 3.85
248 249 2.988859 CCTCCCCAATCTAATGATCCCA 59.011 50.000 0.00 0.00 31.51 4.37
249 250 3.245052 CCTCCCCAATCTAATGATCCCAC 60.245 52.174 0.00 0.00 31.51 4.61
250 251 2.716424 TCCCCAATCTAATGATCCCACC 59.284 50.000 0.00 0.00 31.51 4.61
251 252 2.553028 CCCCAATCTAATGATCCCACCG 60.553 54.545 0.00 0.00 31.51 4.94
252 253 2.154462 CCAATCTAATGATCCCACCGC 58.846 52.381 0.00 0.00 31.51 5.68
253 254 2.154462 CAATCTAATGATCCCACCGCC 58.846 52.381 0.00 0.00 31.51 6.13
254 255 1.434188 ATCTAATGATCCCACCGCCA 58.566 50.000 0.00 0.00 0.00 5.69
255 256 1.434188 TCTAATGATCCCACCGCCAT 58.566 50.000 0.00 0.00 0.00 4.40
256 257 1.347707 TCTAATGATCCCACCGCCATC 59.652 52.381 0.00 0.00 0.00 3.51
257 258 1.349026 CTAATGATCCCACCGCCATCT 59.651 52.381 0.00 0.00 0.00 2.90
258 259 0.179009 AATGATCCCACCGCCATCTG 60.179 55.000 0.00 0.00 0.00 2.90
259 260 1.348008 ATGATCCCACCGCCATCTGT 61.348 55.000 0.00 0.00 0.00 3.41
260 261 0.689412 TGATCCCACCGCCATCTGTA 60.689 55.000 0.00 0.00 0.00 2.74
261 262 0.468226 GATCCCACCGCCATCTGTAA 59.532 55.000 0.00 0.00 0.00 2.41
262 263 0.469917 ATCCCACCGCCATCTGTAAG 59.530 55.000 0.00 0.00 0.00 2.34
263 264 1.819632 CCCACCGCCATCTGTAAGC 60.820 63.158 0.00 0.00 0.00 3.09
264 265 1.221840 CCACCGCCATCTGTAAGCT 59.778 57.895 0.00 0.00 0.00 3.74
265 266 0.811616 CCACCGCCATCTGTAAGCTC 60.812 60.000 0.00 0.00 0.00 4.09
266 267 0.176680 CACCGCCATCTGTAAGCTCT 59.823 55.000 0.00 0.00 0.00 4.09
267 268 0.461961 ACCGCCATCTGTAAGCTCTC 59.538 55.000 0.00 0.00 0.00 3.20
268 269 0.461548 CCGCCATCTGTAAGCTCTCA 59.538 55.000 0.00 0.00 0.00 3.27
269 270 1.069823 CCGCCATCTGTAAGCTCTCAT 59.930 52.381 0.00 0.00 0.00 2.90
270 271 2.402305 CGCCATCTGTAAGCTCTCATC 58.598 52.381 0.00 0.00 0.00 2.92
271 272 2.765122 GCCATCTGTAAGCTCTCATCC 58.235 52.381 0.00 0.00 0.00 3.51
272 273 2.865670 GCCATCTGTAAGCTCTCATCCG 60.866 54.545 0.00 0.00 0.00 4.18
273 274 2.363680 CCATCTGTAAGCTCTCATCCGT 59.636 50.000 0.00 0.00 0.00 4.69
274 275 3.570125 CCATCTGTAAGCTCTCATCCGTA 59.430 47.826 0.00 0.00 0.00 4.02
275 276 4.038042 CCATCTGTAAGCTCTCATCCGTAA 59.962 45.833 0.00 0.00 0.00 3.18
276 277 5.451937 CCATCTGTAAGCTCTCATCCGTAAA 60.452 44.000 0.00 0.00 0.00 2.01
277 278 5.654603 TCTGTAAGCTCTCATCCGTAAAA 57.345 39.130 0.00 0.00 0.00 1.52
278 279 6.032956 TCTGTAAGCTCTCATCCGTAAAAA 57.967 37.500 0.00 0.00 0.00 1.94
279 280 5.867716 TCTGTAAGCTCTCATCCGTAAAAAC 59.132 40.000 0.00 0.00 0.00 2.43
280 281 4.933400 TGTAAGCTCTCATCCGTAAAAACC 59.067 41.667 0.00 0.00 0.00 3.27
281 282 3.983044 AGCTCTCATCCGTAAAAACCT 57.017 42.857 0.00 0.00 0.00 3.50
282 283 3.600388 AGCTCTCATCCGTAAAAACCTG 58.400 45.455 0.00 0.00 0.00 4.00
283 284 2.096013 GCTCTCATCCGTAAAAACCTGC 59.904 50.000 0.00 0.00 0.00 4.85
284 285 2.343101 TCTCATCCGTAAAAACCTGCG 58.657 47.619 0.00 0.00 0.00 5.18
285 286 2.073816 CTCATCCGTAAAAACCTGCGT 58.926 47.619 0.00 0.00 0.00 5.24
286 287 1.801771 TCATCCGTAAAAACCTGCGTG 59.198 47.619 0.00 0.00 0.00 5.34
287 288 0.519961 ATCCGTAAAAACCTGCGTGC 59.480 50.000 0.00 0.00 0.00 5.34
288 289 0.814410 TCCGTAAAAACCTGCGTGCA 60.814 50.000 0.00 0.00 0.00 4.57
289 290 0.029567 CCGTAAAAACCTGCGTGCAA 59.970 50.000 0.00 0.00 0.00 4.08
290 291 1.394697 CGTAAAAACCTGCGTGCAAG 58.605 50.000 0.00 0.00 0.00 4.01
291 292 1.268335 CGTAAAAACCTGCGTGCAAGT 60.268 47.619 0.59 0.00 0.00 3.16
292 293 2.793237 CGTAAAAACCTGCGTGCAAGTT 60.793 45.455 3.07 3.07 32.58 2.66
293 294 3.546417 CGTAAAAACCTGCGTGCAAGTTA 60.546 43.478 9.08 0.00 31.20 2.24
294 295 3.726291 AAAAACCTGCGTGCAAGTTAT 57.274 38.095 9.08 0.02 31.20 1.89
295 296 4.839668 AAAAACCTGCGTGCAAGTTATA 57.160 36.364 9.08 0.00 31.20 0.98
296 297 3.824414 AAACCTGCGTGCAAGTTATAC 57.176 42.857 9.08 0.00 31.20 1.47
297 298 1.734163 ACCTGCGTGCAAGTTATACC 58.266 50.000 0.59 0.00 0.00 2.73
298 299 1.278127 ACCTGCGTGCAAGTTATACCT 59.722 47.619 0.59 0.00 0.00 3.08
299 300 1.665679 CCTGCGTGCAAGTTATACCTG 59.334 52.381 0.59 0.00 0.00 4.00
300 301 1.665679 CTGCGTGCAAGTTATACCTGG 59.334 52.381 0.59 0.00 0.00 4.45
301 302 0.377203 GCGTGCAAGTTATACCTGGC 59.623 55.000 0.59 0.00 31.63 4.85
302 303 1.014352 CGTGCAAGTTATACCTGGCC 58.986 55.000 0.00 0.00 29.72 5.36
303 304 1.677518 CGTGCAAGTTATACCTGGCCA 60.678 52.381 4.71 4.71 29.72 5.36
304 305 1.743394 GTGCAAGTTATACCTGGCCAC 59.257 52.381 0.00 0.00 29.72 5.01
305 306 1.340600 TGCAAGTTATACCTGGCCACC 60.341 52.381 0.00 0.00 29.72 4.61
306 307 2.022238 GCAAGTTATACCTGGCCACCC 61.022 57.143 0.00 0.00 0.00 4.61
307 308 0.924090 AAGTTATACCTGGCCACCCC 59.076 55.000 0.00 0.00 0.00 4.95
308 309 0.045778 AGTTATACCTGGCCACCCCT 59.954 55.000 0.00 0.00 0.00 4.79
309 310 0.472898 GTTATACCTGGCCACCCCTC 59.527 60.000 0.00 0.00 0.00 4.30
310 311 1.052124 TTATACCTGGCCACCCCTCG 61.052 60.000 0.00 0.00 0.00 4.63
311 312 2.957902 TATACCTGGCCACCCCTCGG 62.958 65.000 0.00 2.29 0.00 4.63
330 331 4.785453 CCGAGCCTGACCAAGCCC 62.785 72.222 0.00 0.00 0.00 5.19
332 333 3.706373 GAGCCTGACCAAGCCCGA 61.706 66.667 0.00 0.00 0.00 5.14
333 334 3.959991 GAGCCTGACCAAGCCCGAC 62.960 68.421 0.00 0.00 0.00 4.79
335 336 4.003788 CCTGACCAAGCCCGACGT 62.004 66.667 0.00 0.00 0.00 4.34
336 337 2.642254 CCTGACCAAGCCCGACGTA 61.642 63.158 0.00 0.00 0.00 3.57
337 338 1.153823 CTGACCAAGCCCGACGTAG 60.154 63.158 0.00 0.00 0.00 3.51
338 339 1.592400 CTGACCAAGCCCGACGTAGA 61.592 60.000 0.00 0.00 0.00 2.59
339 340 1.180456 TGACCAAGCCCGACGTAGAA 61.180 55.000 0.00 0.00 0.00 2.10
340 341 0.037975 GACCAAGCCCGACGTAGAAA 60.038 55.000 0.00 0.00 0.00 2.52
341 342 0.611714 ACCAAGCCCGACGTAGAAAT 59.388 50.000 0.00 0.00 0.00 2.17
342 343 1.287425 CCAAGCCCGACGTAGAAATC 58.713 55.000 0.00 0.00 0.00 2.17
343 344 1.287425 CAAGCCCGACGTAGAAATCC 58.713 55.000 0.00 0.00 0.00 3.01
344 345 0.177373 AAGCCCGACGTAGAAATCCC 59.823 55.000 0.00 0.00 0.00 3.85
345 346 0.974010 AGCCCGACGTAGAAATCCCA 60.974 55.000 0.00 0.00 0.00 4.37
346 347 0.529992 GCCCGACGTAGAAATCCCAG 60.530 60.000 0.00 0.00 0.00 4.45
347 348 0.104304 CCCGACGTAGAAATCCCAGG 59.896 60.000 0.00 0.00 0.00 4.45
348 349 0.529992 CCGACGTAGAAATCCCAGGC 60.530 60.000 0.00 0.00 0.00 4.85
349 350 0.529992 CGACGTAGAAATCCCAGGCC 60.530 60.000 0.00 0.00 0.00 5.19
350 351 0.179054 GACGTAGAAATCCCAGGCCC 60.179 60.000 0.00 0.00 0.00 5.80
351 352 1.227556 CGTAGAAATCCCAGGCCCG 60.228 63.158 0.00 0.00 0.00 6.13
352 353 1.148498 GTAGAAATCCCAGGCCCGG 59.852 63.158 0.00 0.00 0.00 5.73
386 387 4.029287 GCGTCGGGCCTAGAAATC 57.971 61.111 0.84 0.00 34.80 2.17
387 388 1.143183 GCGTCGGGCCTAGAAATCA 59.857 57.895 0.84 0.00 34.80 2.57
388 389 0.876342 GCGTCGGGCCTAGAAATCAG 60.876 60.000 0.84 0.00 34.80 2.90
389 390 0.249489 CGTCGGGCCTAGAAATCAGG 60.249 60.000 0.84 0.00 36.16 3.86
396 397 1.685148 CCTAGAAATCAGGCCCAAGC 58.315 55.000 0.00 0.00 38.76 4.01
409 410 4.454717 CAAGCCCGGCGCGTAAAC 62.455 66.667 8.43 0.00 44.76 2.01
410 411 4.692475 AAGCCCGGCGCGTAAACT 62.692 61.111 8.43 0.00 44.76 2.66
411 412 4.692475 AGCCCGGCGCGTAAACTT 62.692 61.111 8.43 0.00 44.76 2.66
412 413 2.784889 AAGCCCGGCGCGTAAACTTA 62.785 55.000 8.43 0.00 44.76 2.24
413 414 2.389809 GCCCGGCGCGTAAACTTAA 61.390 57.895 8.43 0.00 0.00 1.85
414 415 1.910216 GCCCGGCGCGTAAACTTAAA 61.910 55.000 8.43 0.00 0.00 1.52
415 416 0.516439 CCCGGCGCGTAAACTTAAAA 59.484 50.000 8.43 0.00 0.00 1.52
416 417 1.464521 CCCGGCGCGTAAACTTAAAAG 60.465 52.381 8.43 0.00 0.00 2.27
417 418 1.244352 CGGCGCGTAAACTTAAAAGC 58.756 50.000 8.43 0.00 0.00 3.51
418 419 1.609932 GGCGCGTAAACTTAAAAGCC 58.390 50.000 8.43 0.00 36.32 4.35
419 420 1.609932 GCGCGTAAACTTAAAAGCCC 58.390 50.000 8.43 0.00 0.00 5.19
420 421 1.873295 CGCGTAAACTTAAAAGCCCG 58.127 50.000 0.00 0.00 0.00 6.13
421 422 1.609932 GCGTAAACTTAAAAGCCCGC 58.390 50.000 0.00 0.00 0.00 6.13
422 423 1.730121 GCGTAAACTTAAAAGCCCGCC 60.730 52.381 0.00 0.00 34.28 6.13
423 424 1.135603 CGTAAACTTAAAAGCCCGCCC 60.136 52.381 0.00 0.00 0.00 6.13
424 425 1.135603 GTAAACTTAAAAGCCCGCCCG 60.136 52.381 0.00 0.00 0.00 6.13
425 426 1.529152 AAACTTAAAAGCCCGCCCGG 61.529 55.000 0.00 0.00 0.00 5.73
449 450 4.413565 GCCGGGCCCCTTCGTTAA 62.414 66.667 18.66 0.00 0.00 2.01
450 451 2.437180 CCGGGCCCCTTCGTTAAC 60.437 66.667 18.66 0.00 0.00 2.01
451 452 2.666812 CGGGCCCCTTCGTTAACT 59.333 61.111 18.66 0.00 0.00 2.24
452 453 1.449070 CGGGCCCCTTCGTTAACTC 60.449 63.158 18.66 0.00 0.00 3.01
453 454 1.449070 GGGCCCCTTCGTTAACTCG 60.449 63.158 12.23 0.00 0.00 4.18
454 455 2.104859 GGCCCCTTCGTTAACTCGC 61.105 63.158 3.71 0.00 0.00 5.03
455 456 1.375013 GCCCCTTCGTTAACTCGCA 60.375 57.895 3.71 0.00 0.00 5.10
456 457 0.952010 GCCCCTTCGTTAACTCGCAA 60.952 55.000 3.71 0.00 0.00 4.85
457 458 1.515081 CCCCTTCGTTAACTCGCAAA 58.485 50.000 3.71 0.00 0.00 3.68
458 459 2.081462 CCCCTTCGTTAACTCGCAAAT 58.919 47.619 3.71 0.00 0.00 2.32
459 460 2.159572 CCCCTTCGTTAACTCGCAAATG 60.160 50.000 3.71 0.00 0.00 2.32
460 461 2.482721 CCCTTCGTTAACTCGCAAATGT 59.517 45.455 3.71 0.00 0.00 2.71
461 462 3.479006 CCTTCGTTAACTCGCAAATGTG 58.521 45.455 3.71 0.00 0.00 3.21
462 463 3.185594 CCTTCGTTAACTCGCAAATGTGA 59.814 43.478 3.71 0.00 0.00 3.58
463 464 4.142902 CCTTCGTTAACTCGCAAATGTGAT 60.143 41.667 3.71 0.00 33.67 3.06
464 465 4.320667 TCGTTAACTCGCAAATGTGATG 57.679 40.909 3.71 0.00 33.67 3.07
465 466 3.124466 TCGTTAACTCGCAAATGTGATGG 59.876 43.478 3.71 0.00 33.67 3.51
466 467 3.727673 CGTTAACTCGCAAATGTGATGGG 60.728 47.826 3.71 0.00 33.67 4.00
467 468 0.527565 AACTCGCAAATGTGATGGGC 59.472 50.000 0.00 0.00 33.67 5.36
468 469 1.315257 ACTCGCAAATGTGATGGGCC 61.315 55.000 0.00 0.00 33.67 5.80
469 470 1.001020 TCGCAAATGTGATGGGCCT 60.001 52.632 4.53 0.00 0.00 5.19
470 471 0.254462 TCGCAAATGTGATGGGCCTA 59.746 50.000 4.53 0.00 0.00 3.93
471 472 0.664761 CGCAAATGTGATGGGCCTAG 59.335 55.000 4.53 0.00 0.00 3.02
472 473 1.035139 GCAAATGTGATGGGCCTAGG 58.965 55.000 3.67 3.67 0.00 3.02
473 474 1.035139 CAAATGTGATGGGCCTAGGC 58.965 55.000 26.55 26.55 41.06 3.93
508 509 3.601443 CCTTCGGGCTCAATATCTAGG 57.399 52.381 0.00 0.00 0.00 3.02
509 510 2.354203 CCTTCGGGCTCAATATCTAGGC 60.354 54.545 3.05 3.05 37.55 3.93
513 514 2.777832 GGCTCAATATCTAGGCCCAG 57.222 55.000 0.00 0.00 37.12 4.45
514 515 1.280421 GGCTCAATATCTAGGCCCAGG 59.720 57.143 0.00 0.00 37.12 4.45
515 516 1.339535 GCTCAATATCTAGGCCCAGGC 60.340 57.143 0.00 0.00 41.06 4.85
553 554 4.436998 GGCCGGGTCAGTCGACTG 62.437 72.222 34.76 34.76 45.08 3.51
554 555 4.436998 GCCGGGTCAGTCGACTGG 62.437 72.222 37.82 25.79 43.91 4.00
555 556 3.760035 CCGGGTCAGTCGACTGGG 61.760 72.222 37.82 28.53 43.91 4.45
556 557 4.436998 CGGGTCAGTCGACTGGGC 62.437 72.222 37.82 29.96 43.91 5.36
557 558 2.997897 GGGTCAGTCGACTGGGCT 60.998 66.667 37.82 7.10 43.91 5.19
558 559 2.262915 GGTCAGTCGACTGGGCTG 59.737 66.667 37.82 18.93 43.91 4.85
559 560 2.262915 GTCAGTCGACTGGGCTGG 59.737 66.667 37.82 17.46 43.91 4.85
560 561 2.997315 TCAGTCGACTGGGCTGGG 60.997 66.667 37.82 16.77 43.91 4.45
561 562 4.767255 CAGTCGACTGGGCTGGGC 62.767 72.222 33.36 0.00 40.20 5.36
563 564 4.767255 GTCGACTGGGCTGGGCTG 62.767 72.222 8.70 0.00 0.00 4.85
581 582 3.346426 GCCCATGGCCAGGTATAAG 57.654 57.895 17.55 0.00 44.06 1.73
582 583 0.478507 GCCCATGGCCAGGTATAAGT 59.521 55.000 17.55 0.00 44.06 2.24
583 584 1.819305 GCCCATGGCCAGGTATAAGTG 60.819 57.143 17.55 4.03 44.06 3.16
584 585 1.494721 CCCATGGCCAGGTATAAGTGT 59.505 52.381 17.55 0.00 0.00 3.55
585 586 2.708861 CCCATGGCCAGGTATAAGTGTA 59.291 50.000 17.55 0.00 0.00 2.90
586 587 3.244561 CCCATGGCCAGGTATAAGTGTAG 60.245 52.174 17.55 0.00 0.00 2.74
587 588 3.403038 CATGGCCAGGTATAAGTGTAGC 58.597 50.000 13.05 0.00 0.00 3.58
588 589 2.473070 TGGCCAGGTATAAGTGTAGCA 58.527 47.619 0.00 0.00 0.00 3.49
589 590 3.045634 TGGCCAGGTATAAGTGTAGCAT 58.954 45.455 0.00 0.00 0.00 3.79
594 595 4.982916 CCAGGTATAAGTGTAGCATCGTTC 59.017 45.833 0.00 0.00 0.00 3.95
614 615 9.764363 ATCGTTCATTTACATGCTATAGAGAAA 57.236 29.630 3.21 0.00 0.00 2.52
618 619 8.824159 TCATTTACATGCTATAGAGAAAGAGC 57.176 34.615 3.21 0.00 35.43 4.09
635 639 3.565307 AGAGCAGTCAATTGGGAAAACA 58.435 40.909 5.42 0.00 0.00 2.83
683 692 1.614903 CACGTAGGACAGTACACCCAA 59.385 52.381 0.00 0.00 0.00 4.12
762 771 1.830145 CCCCCGGGTGTCAAGATAG 59.170 63.158 21.85 0.00 0.00 2.08
786 795 0.107017 CTCAATCCCACGCTTCCCAT 60.107 55.000 0.00 0.00 0.00 4.00
837 846 2.689034 GTGACCTCCCCCTCCTGG 60.689 72.222 0.00 0.00 0.00 4.45
853 862 3.402681 GGCCAGCCAGTAGCCTCA 61.403 66.667 3.12 0.00 45.47 3.86
899 908 3.490759 GCATCACTCGGTGCCACG 61.491 66.667 0.00 0.00 35.35 4.94
953 962 2.036764 GAAGCAGCACGCCCGTAATC 62.037 60.000 0.00 0.00 44.04 1.75
1045 1054 2.987125 GGTCGGAGCTAAAGCCCA 59.013 61.111 0.00 0.00 43.38 5.36
1132 1149 3.483869 GGGCCGCCATCCTTCTCT 61.484 66.667 12.58 0.00 0.00 3.10
1215 1233 1.795170 TTTGCCTTGCTCGTTCTGCC 61.795 55.000 0.00 0.00 0.00 4.85
1237 1255 4.074526 TCGTGCTCTGCCTCTGCC 62.075 66.667 0.00 0.00 36.33 4.85
1308 1327 1.538047 CTGGGTGTATTTGCAGCAGT 58.462 50.000 0.00 0.00 38.49 4.40
1356 1375 2.421923 TCGTTCTCGGACCTGGAGGT 62.422 60.000 0.00 0.00 43.01 3.85
1379 1398 1.177401 GGGAATGGAGTGTTGCTTCC 58.823 55.000 0.00 0.00 35.65 3.46
1383 1402 2.592102 ATGGAGTGTTGCTTCCACAT 57.408 45.000 0.00 0.00 34.82 3.21
1411 1435 0.320247 CCTTGCTCGTTCTGCTCTGT 60.320 55.000 0.00 0.00 0.00 3.41
1416 1440 1.401148 GCTCGTTCTGCTCTGTTCGTA 60.401 52.381 0.00 0.00 0.00 3.43
1433 1457 0.179124 GTACTCTGCCTCTGCTTCCG 60.179 60.000 0.00 0.00 38.71 4.30
1446 1474 1.796151 CTTCCGCTCCGTACGTACA 59.204 57.895 24.50 6.07 0.00 2.90
1478 1506 4.504461 CAGATTCTCGCAGTTAATTACGCT 59.496 41.667 0.00 0.00 0.00 5.07
1489 1517 6.255215 CAGTTAATTACGCTGGGTGTATTTG 58.745 40.000 7.71 0.51 0.00 2.32
1498 1526 0.171903 GGGTGTATTTGCAGCAGCTG 59.828 55.000 18.93 18.93 42.74 4.24
1499 1527 1.167851 GGTGTATTTGCAGCAGCTGA 58.832 50.000 27.39 5.57 42.74 4.26
1500 1528 1.541147 GGTGTATTTGCAGCAGCTGAA 59.459 47.619 27.39 14.04 42.74 3.02
1507 1535 1.374758 GCAGCAGCTGAACCGTACT 60.375 57.895 27.39 0.00 37.91 2.73
1516 1544 0.806868 TGAACCGTACTGTAGGCTCG 59.193 55.000 0.00 0.00 0.00 5.03
1608 1636 0.527113 TGCATCCTTGATTGGCGTTG 59.473 50.000 0.00 0.00 0.00 4.10
1636 1664 5.777802 CTGTCTAGCTGTATTGTATCCAGG 58.222 45.833 0.00 0.00 0.00 4.45
1637 1665 5.208890 TGTCTAGCTGTATTGTATCCAGGT 58.791 41.667 0.00 0.00 39.91 4.00
1648 1676 8.285891 TGTATTGTATCCAGGTCCCAAATTTAT 58.714 33.333 0.00 0.00 0.00 1.40
1661 1689 6.373495 GTCCCAAATTTATTGACCGAACTAGT 59.627 38.462 0.00 0.00 0.00 2.57
1662 1690 7.550196 GTCCCAAATTTATTGACCGAACTAGTA 59.450 37.037 0.00 0.00 0.00 1.82
1663 1691 7.767198 TCCCAAATTTATTGACCGAACTAGTAG 59.233 37.037 0.00 0.00 0.00 2.57
1678 1706 7.249147 CGAACTAGTAGTAGCAGTACAATTGT 58.751 38.462 16.68 16.68 0.00 2.71
1680 1708 6.783162 ACTAGTAGTAGCAGTACAATTGTCG 58.217 40.000 15.85 6.29 0.00 4.35
1723 1751 2.852901 GCAACTTCGCAACGTGATTTGA 60.853 45.455 0.00 0.00 0.00 2.69
1744 1772 7.615582 TTGACAGAAAAGATAATAGCCACTG 57.384 36.000 0.00 0.00 0.00 3.66
1808 1836 1.364171 GGACTCGATATGCCACGCT 59.636 57.895 0.00 0.00 0.00 5.07
1810 1838 0.249073 GACTCGATATGCCACGCTGT 60.249 55.000 0.00 0.00 0.00 4.40
1821 1849 2.100584 TGCCACGCTGTGAAAAGAAAAT 59.899 40.909 9.75 0.00 35.23 1.82
1841 1869 8.705594 AGAAAATTAATGCTACTAGCTCACCTA 58.294 33.333 9.49 0.00 42.97 3.08
1893 1921 7.998580 ACTATAACTCAGAACTGTTACCTAGC 58.001 38.462 0.00 0.00 32.43 3.42
1896 1924 3.100671 CTCAGAACTGTTACCTAGCCCT 58.899 50.000 0.00 0.00 0.00 5.19
1917 1945 2.964740 ACTGTTGGTGACTGATGATCG 58.035 47.619 0.00 0.00 0.00 3.69
1922 1950 3.236632 TGGTGACTGATGATCGAACAG 57.763 47.619 0.82 6.19 37.62 3.16
2119 2150 4.427312 CATGGCTCTTTTACTTTGCATCC 58.573 43.478 0.00 0.00 0.00 3.51
2126 2157 5.768317 TCTTTTACTTTGCATCCTTTTCCG 58.232 37.500 0.00 0.00 0.00 4.30
2162 2193 1.611977 GGCCAGCCGTAATTTAATCCC 59.388 52.381 0.00 0.00 0.00 3.85
2170 2201 4.528920 CCGTAATTTAATCCCCACTTGGA 58.471 43.478 0.00 0.00 39.18 3.53
2181 2212 3.141272 TCCCCACTTGGAAACATAAAGGT 59.859 43.478 0.00 0.00 42.32 3.50
2182 2213 4.354387 TCCCCACTTGGAAACATAAAGGTA 59.646 41.667 0.00 0.00 42.32 3.08
2195 2226 5.116882 ACATAAAGGTATCTTCTTCGTGGC 58.883 41.667 0.00 0.00 31.82 5.01
2266 2297 0.323725 ATTTGCAGCCATCGTTCCCT 60.324 50.000 0.00 0.00 0.00 4.20
2273 2304 1.522092 CCATCGTTCCCTGCTGCTA 59.478 57.895 0.00 0.00 0.00 3.49
2274 2305 0.107456 CCATCGTTCCCTGCTGCTAT 59.893 55.000 0.00 0.00 0.00 2.97
2278 2310 1.709147 CGTTCCCTGCTGCTATGTGC 61.709 60.000 0.00 0.00 43.25 4.57
2291 2323 5.106791 GCTGCTATGTGCCAATTATACAGAG 60.107 44.000 0.00 0.00 42.00 3.35
2301 2333 5.059833 CCAATTATACAGAGGTCCTGCTTC 58.940 45.833 0.00 0.00 46.81 3.86
2314 2346 2.364324 TCCTGCTTCGACATATGTACCC 59.636 50.000 8.71 0.00 0.00 3.69
2315 2347 2.102420 CCTGCTTCGACATATGTACCCA 59.898 50.000 8.71 1.65 0.00 4.51
2316 2348 3.431626 CCTGCTTCGACATATGTACCCAA 60.432 47.826 8.71 0.00 0.00 4.12
2317 2349 3.527533 TGCTTCGACATATGTACCCAAC 58.472 45.455 8.71 0.00 0.00 3.77
2318 2350 2.870411 GCTTCGACATATGTACCCAACC 59.130 50.000 8.71 0.00 0.00 3.77
2319 2351 3.463944 CTTCGACATATGTACCCAACCC 58.536 50.000 8.71 0.00 0.00 4.11
2320 2352 2.468915 TCGACATATGTACCCAACCCA 58.531 47.619 8.71 0.00 0.00 4.51
2321 2353 2.838813 TCGACATATGTACCCAACCCAA 59.161 45.455 8.71 0.00 0.00 4.12
2515 2574 6.703165 TCTCGAATTGGATGTCATACTCAATG 59.297 38.462 0.00 0.00 36.88 2.82
2623 2682 3.398954 GCTATCTCGAGCCTCTTATCG 57.601 52.381 7.81 0.00 40.26 2.92
2779 2838 4.082523 TTCCTCGCCAAGCTCCGG 62.083 66.667 0.00 0.00 0.00 5.14
3262 3324 5.431420 AACGTGACAGTGATTTGCATTTA 57.569 34.783 0.00 0.00 0.00 1.40
3351 3416 4.253685 TGTACTTCACAGAATAAGCCAGC 58.746 43.478 0.00 0.00 31.89 4.85
3410 3475 8.465999 TGAAGTCTTTTTACTTGAGCAATTCAA 58.534 29.630 0.00 0.00 43.40 2.69
3426 3491 9.228949 GAGCAATTCAATCTGTATCATAGGAAT 57.771 33.333 0.00 0.00 0.00 3.01
3454 3519 3.162666 TCTTCCCTGTTAGACGTGTCAT 58.837 45.455 0.00 0.00 0.00 3.06
3610 3678 8.553459 TTGGTTCTGTCTTTCTTCATCTATTC 57.447 34.615 0.00 0.00 0.00 1.75
3611 3679 6.813649 TGGTTCTGTCTTTCTTCATCTATTCG 59.186 38.462 0.00 0.00 0.00 3.34
3653 3721 2.283143 AATTAGCCTGCCATCGCCCA 62.283 55.000 0.00 0.00 0.00 5.36
3702 3770 2.099921 TGGTGGTCCGACAAATTTTGTG 59.900 45.455 19.03 11.01 45.52 3.33
3722 3790 2.158475 TGAGTGGGGCTGAAAGTTTGAT 60.158 45.455 0.00 0.00 35.30 2.57
3734 3802 7.329471 GGCTGAAAGTTTGATTGGAGATTTTAC 59.671 37.037 0.00 0.00 35.30 2.01
3744 3812 2.805671 TGGAGATTTTACTGTGTGTGCG 59.194 45.455 0.00 0.00 0.00 5.34
3750 3818 4.466567 TTTTACTGTGTGTGCGAATCTG 57.533 40.909 0.00 0.00 0.00 2.90
3779 3850 8.918202 AATTTATATATTTCCCTTGAGCGTCA 57.082 30.769 0.00 0.00 0.00 4.35
3783 3854 3.923017 ATTTCCCTTGAGCGTCAAAAG 57.077 42.857 2.82 0.00 35.73 2.27
3784 3855 0.951558 TTCCCTTGAGCGTCAAAAGC 59.048 50.000 2.82 0.00 35.73 3.51
3885 4520 0.482446 ACAAAGTGCCCTCCATTCCA 59.518 50.000 0.00 0.00 0.00 3.53
3902 4537 4.569719 TTCCAGAAGTATTTCCAGGACC 57.430 45.455 8.66 0.00 37.59 4.46
3942 4577 2.059541 GTCGGTGCTGTCTACTTTCAC 58.940 52.381 0.00 0.00 0.00 3.18
4172 4826 6.594159 TGTTTCTTCTGAATTTACTCGGATCC 59.406 38.462 0.00 0.00 30.77 3.36
4202 4856 5.338056 CCCTGCCCTTAACTTTTATTTTCCC 60.338 44.000 0.00 0.00 0.00 3.97
4203 4857 5.394224 TGCCCTTAACTTTTATTTTCCCG 57.606 39.130 0.00 0.00 0.00 5.14
4219 4873 0.677288 CCCGTGTGTGTGTTCCTCTA 59.323 55.000 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.616524 CTATCGGGATTGGGTTAGGGA 58.383 52.381 0.00 0.00 0.00 4.20
1 2 1.628846 CCTATCGGGATTGGGTTAGGG 59.371 57.143 1.76 0.00 37.23 3.53
2 3 2.616524 TCCTATCGGGATTGGGTTAGG 58.383 52.381 8.87 0.00 39.58 2.69
3 4 3.554337 CGTTCCTATCGGGATTGGGTTAG 60.554 52.174 8.87 0.00 44.66 2.34
4 5 2.366266 CGTTCCTATCGGGATTGGGTTA 59.634 50.000 8.87 0.00 44.66 2.85
5 6 1.140252 CGTTCCTATCGGGATTGGGTT 59.860 52.381 8.87 0.00 44.66 4.11
6 7 0.756903 CGTTCCTATCGGGATTGGGT 59.243 55.000 8.87 0.00 44.66 4.51
7 8 0.756903 ACGTTCCTATCGGGATTGGG 59.243 55.000 8.87 2.62 44.66 4.12
8 9 1.270147 GGACGTTCCTATCGGGATTGG 60.270 57.143 3.16 3.16 44.66 3.16
9 10 1.602165 CGGACGTTCCTATCGGGATTG 60.602 57.143 0.00 0.00 44.66 2.67
10 11 0.672342 CGGACGTTCCTATCGGGATT 59.328 55.000 0.00 0.00 44.66 3.01
11 12 0.466922 ACGGACGTTCCTATCGGGAT 60.467 55.000 0.00 0.00 44.66 3.85
12 13 1.077501 ACGGACGTTCCTATCGGGA 60.078 57.895 0.00 0.00 43.41 5.14
13 14 1.065273 CACGGACGTTCCTATCGGG 59.935 63.158 0.00 0.00 33.30 5.14
14 15 1.588139 GCACGGACGTTCCTATCGG 60.588 63.158 0.00 0.00 33.30 4.18
15 16 1.588139 GGCACGGACGTTCCTATCG 60.588 63.158 6.29 0.00 33.30 2.92
16 17 0.248949 GAGGCACGGACGTTCCTATC 60.249 60.000 15.58 1.90 41.62 2.08
17 18 0.683504 AGAGGCACGGACGTTCCTAT 60.684 55.000 15.58 10.30 41.62 2.57
18 19 1.303888 AGAGGCACGGACGTTCCTA 60.304 57.895 15.58 0.00 41.62 2.94
19 20 2.600769 AGAGGCACGGACGTTCCT 60.601 61.111 15.54 15.54 44.10 3.36
20 21 2.126031 GAGAGGCACGGACGTTCC 60.126 66.667 5.39 5.39 0.00 3.62
21 22 2.504244 CGAGAGGCACGGACGTTC 60.504 66.667 0.00 0.00 0.00 3.95
22 23 2.979197 CTCGAGAGGCACGGACGTT 61.979 63.158 6.58 0.00 0.00 3.99
23 24 3.432588 CTCGAGAGGCACGGACGT 61.433 66.667 6.58 0.00 0.00 4.34
24 25 4.838486 GCTCGAGAGGCACGGACG 62.838 72.222 18.75 0.00 0.00 4.79
25 26 3.691744 CTGCTCGAGAGGCACGGAC 62.692 68.421 18.75 0.00 34.43 4.79
26 27 3.443925 CTGCTCGAGAGGCACGGA 61.444 66.667 18.75 0.00 34.43 4.69
27 28 3.408501 CTCTGCTCGAGAGGCACGG 62.409 68.421 18.75 2.78 44.25 4.94
28 29 2.101965 CTCTGCTCGAGAGGCACG 59.898 66.667 18.75 2.71 44.25 5.34
34 35 4.121669 GCGTGGCTCTGCTCGAGA 62.122 66.667 18.75 0.02 42.62 4.04
35 36 4.426112 TGCGTGGCTCTGCTCGAG 62.426 66.667 8.45 8.45 42.88 4.04
36 37 4.724602 GTGCGTGGCTCTGCTCGA 62.725 66.667 10.30 0.00 0.00 4.04
37 38 3.342370 TAGTGCGTGGCTCTGCTCG 62.342 63.158 2.71 0.00 34.22 5.03
38 39 1.518133 CTAGTGCGTGGCTCTGCTC 60.518 63.158 2.71 2.57 34.22 4.26
39 40 1.979155 TCTAGTGCGTGGCTCTGCT 60.979 57.895 2.71 0.00 34.22 4.24
40 41 1.807573 GTCTAGTGCGTGGCTCTGC 60.808 63.158 2.71 0.00 34.22 4.26
41 42 1.153745 GGTCTAGTGCGTGGCTCTG 60.154 63.158 2.71 0.00 34.22 3.35
42 43 1.185618 TTGGTCTAGTGCGTGGCTCT 61.186 55.000 0.00 0.00 36.36 4.09
43 44 1.014564 GTTGGTCTAGTGCGTGGCTC 61.015 60.000 0.00 0.00 0.00 4.70
44 45 1.004918 GTTGGTCTAGTGCGTGGCT 60.005 57.895 0.00 0.00 0.00 4.75
45 46 2.033194 GGTTGGTCTAGTGCGTGGC 61.033 63.158 0.00 0.00 0.00 5.01
46 47 1.736645 CGGTTGGTCTAGTGCGTGG 60.737 63.158 0.00 0.00 0.00 4.94
47 48 1.007336 GTCGGTTGGTCTAGTGCGTG 61.007 60.000 0.00 0.00 0.00 5.34
48 49 1.288127 GTCGGTTGGTCTAGTGCGT 59.712 57.895 0.00 0.00 0.00 5.24
49 50 0.319211 TTGTCGGTTGGTCTAGTGCG 60.319 55.000 0.00 0.00 0.00 5.34
50 51 1.429463 CTTGTCGGTTGGTCTAGTGC 58.571 55.000 0.00 0.00 0.00 4.40
51 52 1.000955 AGCTTGTCGGTTGGTCTAGTG 59.999 52.381 0.00 0.00 0.00 2.74
52 53 1.339097 AGCTTGTCGGTTGGTCTAGT 58.661 50.000 0.00 0.00 0.00 2.57
53 54 2.069273 CAAGCTTGTCGGTTGGTCTAG 58.931 52.381 18.65 0.00 45.09 2.43
54 55 2.163818 CAAGCTTGTCGGTTGGTCTA 57.836 50.000 18.65 0.00 45.09 2.59
55 56 3.006672 CAAGCTTGTCGGTTGGTCT 57.993 52.632 18.65 0.00 45.09 3.85
60 61 2.544726 GCTAGCAAGCTTGTCGGTT 58.455 52.632 26.55 10.68 45.85 4.44
61 62 4.285851 GCTAGCAAGCTTGTCGGT 57.714 55.556 26.55 10.07 45.85 4.69
70 71 4.864334 CCCCGCCCTGCTAGCAAG 62.864 72.222 19.86 13.03 0.00 4.01
75 76 4.815973 ATCACCCCCGCCCTGCTA 62.816 66.667 0.00 0.00 0.00 3.49
78 79 4.489771 GTCATCACCCCCGCCCTG 62.490 72.222 0.00 0.00 0.00 4.45
88 89 3.799755 GTTGCCGCCGGTCATCAC 61.800 66.667 4.45 0.00 0.00 3.06
89 90 4.321966 TGTTGCCGCCGGTCATCA 62.322 61.111 4.45 6.14 0.00 3.07
90 91 3.499737 CTGTTGCCGCCGGTCATC 61.500 66.667 4.45 3.45 0.00 2.92
91 92 4.329545 ACTGTTGCCGCCGGTCAT 62.330 61.111 4.45 0.00 0.00 3.06
92 93 4.980805 GACTGTTGCCGCCGGTCA 62.981 66.667 4.45 0.00 37.98 4.02
102 103 3.934391 GACTCCCCGCCGACTGTTG 62.934 68.421 0.00 0.00 0.00 3.33
103 104 3.692406 GACTCCCCGCCGACTGTT 61.692 66.667 0.00 0.00 0.00 3.16
124 125 4.410400 GGAAGCTCCACCCACCCG 62.410 72.222 0.00 0.00 36.28 5.28
125 126 2.936032 AGGAAGCTCCACCCACCC 60.936 66.667 5.21 0.00 39.61 4.61
126 127 2.190488 CTGAGGAAGCTCCACCCACC 62.190 65.000 5.21 0.00 39.61 4.61
127 128 1.298014 CTGAGGAAGCTCCACCCAC 59.702 63.158 5.21 0.00 39.61 4.61
128 129 3.811702 CTGAGGAAGCTCCACCCA 58.188 61.111 5.21 1.93 39.61 4.51
137 138 3.265791 ACGCTGAATAAAGCTGAGGAAG 58.734 45.455 0.00 0.00 41.24 3.46
138 139 3.334583 ACGCTGAATAAAGCTGAGGAA 57.665 42.857 0.00 0.00 41.24 3.36
139 140 3.334583 AACGCTGAATAAAGCTGAGGA 57.665 42.857 0.00 0.00 41.24 3.71
140 141 6.480320 AGTTATAACGCTGAATAAAGCTGAGG 59.520 38.462 9.91 0.00 41.24 3.86
141 142 7.470289 AGTTATAACGCTGAATAAAGCTGAG 57.530 36.000 9.91 0.00 41.24 3.35
142 143 7.843490 AAGTTATAACGCTGAATAAAGCTGA 57.157 32.000 9.91 0.00 41.24 4.26
152 153 9.199982 GCCACTTATATAAAGTTATAACGCTGA 57.800 33.333 9.91 0.00 0.00 4.26
153 154 8.984764 TGCCACTTATATAAAGTTATAACGCTG 58.015 33.333 9.91 0.00 0.00 5.18
154 155 9.204570 CTGCCACTTATATAAAGTTATAACGCT 57.795 33.333 9.91 4.14 0.00 5.07
155 156 7.955864 GCTGCCACTTATATAAAGTTATAACGC 59.044 37.037 9.91 3.62 0.00 4.84
156 157 8.160342 CGCTGCCACTTATATAAAGTTATAACG 58.840 37.037 9.91 0.00 0.00 3.18
157 158 8.985805 ACGCTGCCACTTATATAAAGTTATAAC 58.014 33.333 7.57 7.57 0.00 1.89
158 159 9.199982 GACGCTGCCACTTATATAAAGTTATAA 57.800 33.333 0.00 0.00 0.00 0.98
159 160 8.582437 AGACGCTGCCACTTATATAAAGTTATA 58.418 33.333 0.00 0.00 0.00 0.98
160 161 7.442656 AGACGCTGCCACTTATATAAAGTTAT 58.557 34.615 0.00 0.00 0.00 1.89
161 162 6.812998 AGACGCTGCCACTTATATAAAGTTA 58.187 36.000 0.00 0.00 0.00 2.24
162 163 5.671493 AGACGCTGCCACTTATATAAAGTT 58.329 37.500 0.00 0.00 0.00 2.66
163 164 5.277857 AGACGCTGCCACTTATATAAAGT 57.722 39.130 0.00 0.00 0.00 2.66
164 165 7.891183 ATTAGACGCTGCCACTTATATAAAG 57.109 36.000 0.00 0.00 0.00 1.85
165 166 8.671384 AAATTAGACGCTGCCACTTATATAAA 57.329 30.769 0.00 0.00 0.00 1.40
166 167 9.938280 ATAAATTAGACGCTGCCACTTATATAA 57.062 29.630 0.00 0.00 0.00 0.98
167 168 9.582431 GATAAATTAGACGCTGCCACTTATATA 57.418 33.333 0.00 0.00 0.00 0.86
168 169 7.549488 GGATAAATTAGACGCTGCCACTTATAT 59.451 37.037 0.00 0.00 0.00 0.86
169 170 6.872020 GGATAAATTAGACGCTGCCACTTATA 59.128 38.462 0.00 0.00 0.00 0.98
170 171 5.701290 GGATAAATTAGACGCTGCCACTTAT 59.299 40.000 0.00 0.00 0.00 1.73
171 172 5.054477 GGATAAATTAGACGCTGCCACTTA 58.946 41.667 0.00 0.00 0.00 2.24
172 173 3.877508 GGATAAATTAGACGCTGCCACTT 59.122 43.478 0.00 0.00 0.00 3.16
173 174 3.467803 GGATAAATTAGACGCTGCCACT 58.532 45.455 0.00 0.00 0.00 4.00
174 175 2.548480 GGGATAAATTAGACGCTGCCAC 59.452 50.000 0.00 0.00 0.00 5.01
175 176 2.438021 AGGGATAAATTAGACGCTGCCA 59.562 45.455 0.00 0.00 0.00 4.92
176 177 3.127425 AGGGATAAATTAGACGCTGCC 57.873 47.619 0.00 0.00 0.00 4.85
177 178 3.498777 GGAAGGGATAAATTAGACGCTGC 59.501 47.826 0.00 0.00 0.00 5.25
178 179 4.962155 AGGAAGGGATAAATTAGACGCTG 58.038 43.478 0.00 0.00 0.00 5.18
179 180 5.454897 GGAAGGAAGGGATAAATTAGACGCT 60.455 44.000 0.00 0.00 0.00 5.07
180 181 4.755629 GGAAGGAAGGGATAAATTAGACGC 59.244 45.833 0.00 0.00 0.00 5.19
181 182 5.163237 TGGGAAGGAAGGGATAAATTAGACG 60.163 44.000 0.00 0.00 0.00 4.18
182 183 6.262056 TGGGAAGGAAGGGATAAATTAGAC 57.738 41.667 0.00 0.00 0.00 2.59
183 184 6.918951 TTGGGAAGGAAGGGATAAATTAGA 57.081 37.500 0.00 0.00 0.00 2.10
184 185 8.553085 AAATTGGGAAGGAAGGGATAAATTAG 57.447 34.615 0.00 0.00 0.00 1.73
185 186 8.125733 TGAAATTGGGAAGGAAGGGATAAATTA 58.874 33.333 0.00 0.00 0.00 1.40
186 187 6.965272 TGAAATTGGGAAGGAAGGGATAAATT 59.035 34.615 0.00 0.00 0.00 1.82
187 188 6.511208 TGAAATTGGGAAGGAAGGGATAAAT 58.489 36.000 0.00 0.00 0.00 1.40
188 189 5.909760 TGAAATTGGGAAGGAAGGGATAAA 58.090 37.500 0.00 0.00 0.00 1.40
189 190 5.255207 TCTGAAATTGGGAAGGAAGGGATAA 59.745 40.000 0.00 0.00 0.00 1.75
190 191 4.793520 TCTGAAATTGGGAAGGAAGGGATA 59.206 41.667 0.00 0.00 0.00 2.59
191 192 3.597868 TCTGAAATTGGGAAGGAAGGGAT 59.402 43.478 0.00 0.00 0.00 3.85
192 193 2.993146 TCTGAAATTGGGAAGGAAGGGA 59.007 45.455 0.00 0.00 0.00 4.20
193 194 3.359950 CTCTGAAATTGGGAAGGAAGGG 58.640 50.000 0.00 0.00 0.00 3.95
194 195 3.245407 ACCTCTGAAATTGGGAAGGAAGG 60.245 47.826 4.67 0.00 0.00 3.46
195 196 3.760684 CACCTCTGAAATTGGGAAGGAAG 59.239 47.826 4.67 0.00 0.00 3.46
196 197 3.766545 CACCTCTGAAATTGGGAAGGAA 58.233 45.455 4.67 0.00 0.00 3.36
197 198 2.555227 GCACCTCTGAAATTGGGAAGGA 60.555 50.000 4.67 0.00 0.00 3.36
198 199 1.821136 GCACCTCTGAAATTGGGAAGG 59.179 52.381 0.00 0.00 0.00 3.46
199 200 1.470098 CGCACCTCTGAAATTGGGAAG 59.530 52.381 0.00 0.00 0.00 3.46
200 201 1.533625 CGCACCTCTGAAATTGGGAA 58.466 50.000 0.00 0.00 0.00 3.97
201 202 0.322456 CCGCACCTCTGAAATTGGGA 60.322 55.000 0.00 0.00 0.00 4.37
202 203 1.937546 GCCGCACCTCTGAAATTGGG 61.938 60.000 0.00 0.00 0.00 4.12
203 204 1.508088 GCCGCACCTCTGAAATTGG 59.492 57.895 0.00 0.00 0.00 3.16
204 205 1.508088 GGCCGCACCTCTGAAATTG 59.492 57.895 0.00 0.00 34.51 2.32
205 206 1.678970 GGGCCGCACCTCTGAAATT 60.679 57.895 0.00 0.00 39.10 1.82
206 207 2.044946 GGGCCGCACCTCTGAAAT 60.045 61.111 0.00 0.00 39.10 2.17
207 208 3.249189 AGGGCCGCACCTCTGAAA 61.249 61.111 0.00 0.00 35.43 2.69
220 221 4.570874 GATTGGGGAGGCGAGGGC 62.571 72.222 0.00 0.00 38.90 5.19
221 222 1.054406 TTAGATTGGGGAGGCGAGGG 61.054 60.000 0.00 0.00 0.00 4.30
222 223 1.059913 ATTAGATTGGGGAGGCGAGG 58.940 55.000 0.00 0.00 0.00 4.63
223 224 1.694150 TCATTAGATTGGGGAGGCGAG 59.306 52.381 0.00 0.00 0.00 5.03
224 225 1.801242 TCATTAGATTGGGGAGGCGA 58.199 50.000 0.00 0.00 0.00 5.54
225 226 2.616510 GGATCATTAGATTGGGGAGGCG 60.617 54.545 0.00 0.00 33.72 5.52
226 227 2.291217 GGGATCATTAGATTGGGGAGGC 60.291 54.545 0.00 0.00 33.72 4.70
227 228 2.988859 TGGGATCATTAGATTGGGGAGG 59.011 50.000 0.00 0.00 33.72 4.30
228 229 3.245052 GGTGGGATCATTAGATTGGGGAG 60.245 52.174 0.00 0.00 33.72 4.30
229 230 2.716424 GGTGGGATCATTAGATTGGGGA 59.284 50.000 0.00 0.00 33.72 4.81
230 231 2.553028 CGGTGGGATCATTAGATTGGGG 60.553 54.545 0.00 0.00 33.72 4.96
231 232 2.783135 CGGTGGGATCATTAGATTGGG 58.217 52.381 0.00 0.00 33.72 4.12
232 233 2.154462 GCGGTGGGATCATTAGATTGG 58.846 52.381 0.00 0.00 33.72 3.16
233 234 2.154462 GGCGGTGGGATCATTAGATTG 58.846 52.381 0.00 0.00 33.72 2.67
234 235 1.774254 TGGCGGTGGGATCATTAGATT 59.226 47.619 0.00 0.00 33.72 2.40
235 236 1.434188 TGGCGGTGGGATCATTAGAT 58.566 50.000 0.00 0.00 37.13 1.98
236 237 1.347707 GATGGCGGTGGGATCATTAGA 59.652 52.381 0.00 0.00 0.00 2.10
237 238 1.349026 AGATGGCGGTGGGATCATTAG 59.651 52.381 0.00 0.00 0.00 1.73
238 239 1.072173 CAGATGGCGGTGGGATCATTA 59.928 52.381 0.00 0.00 0.00 1.90
239 240 0.179009 CAGATGGCGGTGGGATCATT 60.179 55.000 0.00 0.00 0.00 2.57
240 241 1.348008 ACAGATGGCGGTGGGATCAT 61.348 55.000 0.00 0.00 0.00 2.45
241 242 0.689412 TACAGATGGCGGTGGGATCA 60.689 55.000 0.00 0.00 0.00 2.92
242 243 0.468226 TTACAGATGGCGGTGGGATC 59.532 55.000 0.00 0.00 0.00 3.36
243 244 0.469917 CTTACAGATGGCGGTGGGAT 59.530 55.000 0.00 0.00 0.00 3.85
244 245 1.904771 CTTACAGATGGCGGTGGGA 59.095 57.895 0.00 0.00 0.00 4.37
245 246 1.819632 GCTTACAGATGGCGGTGGG 60.820 63.158 0.00 0.00 0.00 4.61
246 247 0.811616 GAGCTTACAGATGGCGGTGG 60.812 60.000 0.00 0.00 0.00 4.61
247 248 0.176680 AGAGCTTACAGATGGCGGTG 59.823 55.000 0.00 0.00 0.00 4.94
248 249 0.461961 GAGAGCTTACAGATGGCGGT 59.538 55.000 0.00 0.00 0.00 5.68
249 250 0.461548 TGAGAGCTTACAGATGGCGG 59.538 55.000 0.00 0.00 0.00 6.13
250 251 2.402305 GATGAGAGCTTACAGATGGCG 58.598 52.381 0.00 0.00 0.00 5.69
251 252 2.765122 GGATGAGAGCTTACAGATGGC 58.235 52.381 0.00 0.00 0.00 4.40
252 253 2.363680 ACGGATGAGAGCTTACAGATGG 59.636 50.000 0.00 0.00 0.00 3.51
253 254 3.724508 ACGGATGAGAGCTTACAGATG 57.275 47.619 0.00 0.00 0.00 2.90
254 255 5.854010 TTTACGGATGAGAGCTTACAGAT 57.146 39.130 0.00 0.00 0.00 2.90
255 256 5.654603 TTTTACGGATGAGAGCTTACAGA 57.345 39.130 0.00 0.00 0.00 3.41
256 257 5.063564 GGTTTTTACGGATGAGAGCTTACAG 59.936 44.000 0.00 0.00 0.00 2.74
257 258 4.933400 GGTTTTTACGGATGAGAGCTTACA 59.067 41.667 0.00 0.00 0.00 2.41
258 259 5.063564 CAGGTTTTTACGGATGAGAGCTTAC 59.936 44.000 0.00 0.00 0.00 2.34
259 260 5.175859 CAGGTTTTTACGGATGAGAGCTTA 58.824 41.667 0.00 0.00 0.00 3.09
260 261 4.003648 CAGGTTTTTACGGATGAGAGCTT 58.996 43.478 0.00 0.00 0.00 3.74
261 262 3.600388 CAGGTTTTTACGGATGAGAGCT 58.400 45.455 0.00 0.00 0.00 4.09
262 263 2.096013 GCAGGTTTTTACGGATGAGAGC 59.904 50.000 0.00 0.00 0.00 4.09
263 264 2.348666 CGCAGGTTTTTACGGATGAGAG 59.651 50.000 0.00 0.00 0.00 3.20
264 265 2.289195 ACGCAGGTTTTTACGGATGAGA 60.289 45.455 0.00 0.00 0.00 3.27
265 266 2.073816 ACGCAGGTTTTTACGGATGAG 58.926 47.619 0.00 0.00 0.00 2.90
266 267 1.801771 CACGCAGGTTTTTACGGATGA 59.198 47.619 0.00 0.00 0.00 2.92
267 268 1.727857 GCACGCAGGTTTTTACGGATG 60.728 52.381 0.00 0.00 0.00 3.51
268 269 0.519961 GCACGCAGGTTTTTACGGAT 59.480 50.000 0.00 0.00 0.00 4.18
269 270 0.814410 TGCACGCAGGTTTTTACGGA 60.814 50.000 0.00 0.00 0.00 4.69
270 271 0.029567 TTGCACGCAGGTTTTTACGG 59.970 50.000 0.00 0.00 0.00 4.02
271 272 1.268335 ACTTGCACGCAGGTTTTTACG 60.268 47.619 0.29 0.00 32.14 3.18
272 273 2.485266 ACTTGCACGCAGGTTTTTAC 57.515 45.000 0.29 0.00 32.14 2.01
273 274 4.839668 ATAACTTGCACGCAGGTTTTTA 57.160 36.364 22.22 7.50 42.32 1.52
274 275 3.726291 ATAACTTGCACGCAGGTTTTT 57.274 38.095 22.22 9.81 42.32 1.94
275 276 3.057806 GGTATAACTTGCACGCAGGTTTT 60.058 43.478 22.22 17.20 42.32 2.43
276 277 2.486592 GGTATAACTTGCACGCAGGTTT 59.513 45.455 22.22 13.42 42.32 3.27
277 278 2.081462 GGTATAACTTGCACGCAGGTT 58.919 47.619 21.06 21.06 45.81 3.50
278 279 1.278127 AGGTATAACTTGCACGCAGGT 59.722 47.619 0.29 0.29 37.88 4.00
279 280 1.665679 CAGGTATAACTTGCACGCAGG 59.334 52.381 0.00 0.00 0.00 4.85
280 281 1.665679 CCAGGTATAACTTGCACGCAG 59.334 52.381 0.00 0.00 0.00 5.18
281 282 1.732941 CCAGGTATAACTTGCACGCA 58.267 50.000 0.00 0.00 0.00 5.24
282 283 0.377203 GCCAGGTATAACTTGCACGC 59.623 55.000 8.92 0.00 0.00 5.34
283 284 1.014352 GGCCAGGTATAACTTGCACG 58.986 55.000 15.18 0.00 31.24 5.34
284 285 1.743394 GTGGCCAGGTATAACTTGCAC 59.257 52.381 15.18 8.06 31.24 4.57
285 286 1.340600 GGTGGCCAGGTATAACTTGCA 60.341 52.381 15.18 0.00 31.24 4.08
286 287 1.389555 GGTGGCCAGGTATAACTTGC 58.610 55.000 5.11 5.27 0.00 4.01
287 288 1.409661 GGGGTGGCCAGGTATAACTTG 60.410 57.143 5.11 0.00 0.00 3.16
288 289 0.924090 GGGGTGGCCAGGTATAACTT 59.076 55.000 5.11 0.00 0.00 2.66
289 290 0.045778 AGGGGTGGCCAGGTATAACT 59.954 55.000 5.11 0.00 0.00 2.24
290 291 0.472898 GAGGGGTGGCCAGGTATAAC 59.527 60.000 5.11 0.00 0.00 1.89
291 292 1.052124 CGAGGGGTGGCCAGGTATAA 61.052 60.000 5.11 0.00 0.00 0.98
292 293 1.458777 CGAGGGGTGGCCAGGTATA 60.459 63.158 5.11 0.00 0.00 1.47
293 294 2.768344 CGAGGGGTGGCCAGGTAT 60.768 66.667 5.11 0.00 0.00 2.73
318 319 2.558554 CTACGTCGGGCTTGGTCAGG 62.559 65.000 0.00 0.00 0.00 3.86
319 320 1.153823 CTACGTCGGGCTTGGTCAG 60.154 63.158 0.00 0.00 0.00 3.51
320 321 1.180456 TTCTACGTCGGGCTTGGTCA 61.180 55.000 0.00 0.00 0.00 4.02
321 322 0.037975 TTTCTACGTCGGGCTTGGTC 60.038 55.000 0.00 0.00 0.00 4.02
322 323 0.611714 ATTTCTACGTCGGGCTTGGT 59.388 50.000 0.00 0.00 0.00 3.67
323 324 1.287425 GATTTCTACGTCGGGCTTGG 58.713 55.000 0.00 0.00 0.00 3.61
324 325 1.287425 GGATTTCTACGTCGGGCTTG 58.713 55.000 0.00 0.00 0.00 4.01
325 326 0.177373 GGGATTTCTACGTCGGGCTT 59.823 55.000 0.00 0.00 0.00 4.35
326 327 0.974010 TGGGATTTCTACGTCGGGCT 60.974 55.000 0.00 0.00 0.00 5.19
327 328 0.529992 CTGGGATTTCTACGTCGGGC 60.530 60.000 0.00 0.00 0.00 6.13
328 329 0.104304 CCTGGGATTTCTACGTCGGG 59.896 60.000 0.00 0.00 0.00 5.14
329 330 0.529992 GCCTGGGATTTCTACGTCGG 60.530 60.000 0.00 0.00 0.00 4.79
330 331 0.529992 GGCCTGGGATTTCTACGTCG 60.530 60.000 0.00 0.00 0.00 5.12
331 332 0.179054 GGGCCTGGGATTTCTACGTC 60.179 60.000 0.84 0.00 0.00 4.34
332 333 1.912971 GGGCCTGGGATTTCTACGT 59.087 57.895 0.84 0.00 0.00 3.57
333 334 1.227556 CGGGCCTGGGATTTCTACG 60.228 63.158 2.57 0.00 0.00 3.51
334 335 1.148498 CCGGGCCTGGGATTTCTAC 59.852 63.158 24.51 0.00 0.00 2.59
335 336 3.655358 CCGGGCCTGGGATTTCTA 58.345 61.111 24.51 0.00 0.00 2.10
369 370 0.876342 CTGATTTCTAGGCCCGACGC 60.876 60.000 0.00 0.00 0.00 5.19
370 371 0.249489 CCTGATTTCTAGGCCCGACG 60.249 60.000 0.00 0.00 0.00 5.12
371 372 3.688553 CCTGATTTCTAGGCCCGAC 57.311 57.895 0.00 0.00 0.00 4.79
377 378 1.685148 GCTTGGGCCTGATTTCTAGG 58.315 55.000 4.53 0.00 38.39 3.02
392 393 4.454717 GTTTACGCGCCGGGCTTG 62.455 66.667 18.34 11.55 40.44 4.01
393 394 2.784889 TAAGTTTACGCGCCGGGCTT 62.785 55.000 18.34 7.39 40.44 4.35
394 395 2.784889 TTAAGTTTACGCGCCGGGCT 62.785 55.000 18.34 0.22 40.44 5.19
395 396 1.910216 TTTAAGTTTACGCGCCGGGC 61.910 55.000 9.54 9.54 38.69 6.13
396 397 0.516439 TTTTAAGTTTACGCGCCGGG 59.484 50.000 5.73 0.00 0.00 5.73
397 398 1.873295 CTTTTAAGTTTACGCGCCGG 58.127 50.000 5.73 0.00 0.00 6.13
398 399 1.244352 GCTTTTAAGTTTACGCGCCG 58.756 50.000 5.73 0.00 0.00 6.46
399 400 1.609932 GGCTTTTAAGTTTACGCGCC 58.390 50.000 5.73 0.00 0.00 6.53
400 401 1.609932 GGGCTTTTAAGTTTACGCGC 58.390 50.000 5.73 0.00 0.00 6.86
401 402 1.873295 CGGGCTTTTAAGTTTACGCG 58.127 50.000 3.53 3.53 0.00 6.01
402 403 1.609932 GCGGGCTTTTAAGTTTACGC 58.390 50.000 0.00 0.00 38.94 4.42
403 404 1.135603 GGGCGGGCTTTTAAGTTTACG 60.136 52.381 0.26 0.00 0.00 3.18
404 405 1.135603 CGGGCGGGCTTTTAAGTTTAC 60.136 52.381 0.26 0.00 0.00 2.01
405 406 1.166989 CGGGCGGGCTTTTAAGTTTA 58.833 50.000 0.26 0.00 0.00 2.01
406 407 1.529152 CCGGGCGGGCTTTTAAGTTT 61.529 55.000 0.26 0.00 0.00 2.66
407 408 1.974875 CCGGGCGGGCTTTTAAGTT 60.975 57.895 0.26 0.00 0.00 2.66
408 409 2.360726 CCGGGCGGGCTTTTAAGT 60.361 61.111 0.26 0.00 0.00 2.24
432 433 4.413565 TTAACGAAGGGGCCCGGC 62.414 66.667 18.95 12.49 0.00 6.13
433 434 2.437180 GTTAACGAAGGGGCCCGG 60.437 66.667 18.95 13.43 0.00 5.73
434 435 1.449070 GAGTTAACGAAGGGGCCCG 60.449 63.158 18.95 8.19 0.00 6.13
435 436 1.449070 CGAGTTAACGAAGGGGCCC 60.449 63.158 17.12 17.12 35.09 5.80
436 437 2.104859 GCGAGTTAACGAAGGGGCC 61.105 63.158 0.00 0.00 35.09 5.80
437 438 0.952010 TTGCGAGTTAACGAAGGGGC 60.952 55.000 0.00 0.00 35.09 5.80
438 439 1.515081 TTTGCGAGTTAACGAAGGGG 58.485 50.000 0.00 0.00 35.09 4.79
439 440 2.482721 ACATTTGCGAGTTAACGAAGGG 59.517 45.455 0.00 0.00 35.09 3.95
440 441 3.185594 TCACATTTGCGAGTTAACGAAGG 59.814 43.478 0.00 0.00 35.09 3.46
441 442 4.383774 TCACATTTGCGAGTTAACGAAG 57.616 40.909 0.00 0.00 35.09 3.79
442 443 4.377943 CCATCACATTTGCGAGTTAACGAA 60.378 41.667 0.00 0.00 35.09 3.85
443 444 3.124466 CCATCACATTTGCGAGTTAACGA 59.876 43.478 0.00 0.00 35.09 3.85
444 445 3.416277 CCATCACATTTGCGAGTTAACG 58.584 45.455 0.00 0.00 0.00 3.18
445 446 3.758300 CCCATCACATTTGCGAGTTAAC 58.242 45.455 0.00 0.00 0.00 2.01
446 447 2.163412 GCCCATCACATTTGCGAGTTAA 59.837 45.455 0.00 0.00 0.00 2.01
447 448 1.742831 GCCCATCACATTTGCGAGTTA 59.257 47.619 0.00 0.00 0.00 2.24
448 449 0.527565 GCCCATCACATTTGCGAGTT 59.472 50.000 0.00 0.00 0.00 3.01
449 450 1.315257 GGCCCATCACATTTGCGAGT 61.315 55.000 0.00 0.00 0.00 4.18
450 451 1.033746 AGGCCCATCACATTTGCGAG 61.034 55.000 0.00 0.00 0.00 5.03
451 452 0.254462 TAGGCCCATCACATTTGCGA 59.746 50.000 0.00 0.00 0.00 5.10
452 453 0.664761 CTAGGCCCATCACATTTGCG 59.335 55.000 0.00 0.00 0.00 4.85
453 454 1.035139 CCTAGGCCCATCACATTTGC 58.965 55.000 0.00 0.00 0.00 3.68
454 455 1.035139 GCCTAGGCCCATCACATTTG 58.965 55.000 24.19 0.00 34.56 2.32
455 456 3.520623 GCCTAGGCCCATCACATTT 57.479 52.632 24.19 0.00 34.56 2.32
489 490 2.354203 GGCCTAGATATTGAGCCCGAAG 60.354 54.545 0.00 0.00 37.66 3.79
490 491 1.623811 GGCCTAGATATTGAGCCCGAA 59.376 52.381 0.00 0.00 37.66 4.30
491 492 1.267121 GGCCTAGATATTGAGCCCGA 58.733 55.000 0.00 0.00 37.66 5.14
492 493 3.842869 GGCCTAGATATTGAGCCCG 57.157 57.895 0.00 0.00 37.66 6.13
494 495 1.280421 CCTGGGCCTAGATATTGAGCC 59.720 57.143 19.36 0.00 43.09 4.70
495 496 1.339535 GCCTGGGCCTAGATATTGAGC 60.340 57.143 19.36 6.60 34.56 4.26
496 497 2.777832 GCCTGGGCCTAGATATTGAG 57.222 55.000 19.36 0.00 34.56 3.02
536 537 4.436998 CAGTCGACTGACCCGGCC 62.437 72.222 36.73 0.00 46.74 6.13
537 538 4.436998 CCAGTCGACTGACCCGGC 62.437 72.222 40.21 1.00 46.74 6.13
538 539 3.760035 CCCAGTCGACTGACCCGG 61.760 72.222 40.21 29.49 46.74 5.73
539 540 4.436998 GCCCAGTCGACTGACCCG 62.437 72.222 40.21 25.42 46.74 5.28
540 541 2.997897 AGCCCAGTCGACTGACCC 60.998 66.667 40.21 27.41 46.74 4.46
541 542 2.262915 CAGCCCAGTCGACTGACC 59.737 66.667 40.21 29.56 46.74 4.02
542 543 2.262915 CCAGCCCAGTCGACTGAC 59.737 66.667 40.21 31.03 46.59 3.51
543 544 2.997315 CCCAGCCCAGTCGACTGA 60.997 66.667 40.21 0.00 46.59 3.41
544 545 4.767255 GCCCAGCCCAGTCGACTG 62.767 72.222 33.87 33.87 43.40 3.51
546 547 4.767255 CAGCCCAGCCCAGTCGAC 62.767 72.222 7.70 7.70 0.00 4.20
564 565 1.494721 ACACTTATACCTGGCCATGGG 59.505 52.381 20.97 16.10 0.00 4.00
565 566 3.807209 GCTACACTTATACCTGGCCATGG 60.807 52.174 5.51 13.05 0.00 3.66
566 567 3.181455 TGCTACACTTATACCTGGCCATG 60.181 47.826 5.51 6.06 0.00 3.66
567 568 3.045634 TGCTACACTTATACCTGGCCAT 58.954 45.455 5.51 0.00 0.00 4.40
568 569 2.473070 TGCTACACTTATACCTGGCCA 58.527 47.619 4.71 4.71 0.00 5.36
569 570 3.665190 GATGCTACACTTATACCTGGCC 58.335 50.000 0.00 0.00 0.00 5.36
570 571 3.243771 ACGATGCTACACTTATACCTGGC 60.244 47.826 0.00 0.00 0.00 4.85
571 572 4.585955 ACGATGCTACACTTATACCTGG 57.414 45.455 0.00 0.00 0.00 4.45
572 573 5.588240 TGAACGATGCTACACTTATACCTG 58.412 41.667 0.00 0.00 0.00 4.00
573 574 5.847111 TGAACGATGCTACACTTATACCT 57.153 39.130 0.00 0.00 0.00 3.08
574 575 7.478520 AAATGAACGATGCTACACTTATACC 57.521 36.000 0.00 0.00 0.00 2.73
575 576 9.027129 TGTAAATGAACGATGCTACACTTATAC 57.973 33.333 0.00 0.00 0.00 1.47
576 577 9.758651 ATGTAAATGAACGATGCTACACTTATA 57.241 29.630 0.00 0.00 0.00 0.98
577 578 8.551205 CATGTAAATGAACGATGCTACACTTAT 58.449 33.333 0.00 0.00 0.00 1.73
578 579 7.465379 GCATGTAAATGAACGATGCTACACTTA 60.465 37.037 0.00 0.00 37.13 2.24
579 580 6.675486 GCATGTAAATGAACGATGCTACACTT 60.675 38.462 0.00 0.00 37.13 3.16
580 581 5.220662 GCATGTAAATGAACGATGCTACACT 60.221 40.000 0.00 0.00 37.13 3.55
581 582 4.963953 GCATGTAAATGAACGATGCTACAC 59.036 41.667 0.00 0.00 37.13 2.90
582 583 4.875536 AGCATGTAAATGAACGATGCTACA 59.124 37.500 0.00 0.00 46.10 2.74
583 584 5.409643 AGCATGTAAATGAACGATGCTAC 57.590 39.130 0.00 0.00 46.10 3.58
586 587 7.329471 TCTCTATAGCATGTAAATGAACGATGC 59.671 37.037 0.00 0.00 39.80 3.91
587 588 8.748380 TCTCTATAGCATGTAAATGAACGATG 57.252 34.615 0.00 0.00 0.00 3.84
588 589 9.764363 TTTCTCTATAGCATGTAAATGAACGAT 57.236 29.630 0.00 0.00 0.00 3.73
589 590 9.249457 CTTTCTCTATAGCATGTAAATGAACGA 57.751 33.333 0.00 0.00 0.00 3.85
594 595 8.599055 TGCTCTTTCTCTATAGCATGTAAATG 57.401 34.615 0.00 0.00 39.92 2.32
614 615 3.565307 TGTTTTCCCAATTGACTGCTCT 58.435 40.909 7.12 0.00 0.00 4.09
618 619 8.550376 CAAGTATTTTGTTTTCCCAATTGACTG 58.450 33.333 7.12 0.00 0.00 3.51
635 639 8.197439 CCTTCTTTTCACTCAACCAAGTATTTT 58.803 33.333 0.00 0.00 0.00 1.82
683 692 4.194720 GTGCGCGATCTCGGAGGT 62.195 66.667 12.10 0.00 40.23 3.85
762 771 0.462759 AAGCGTGGGATTGAGCTAGC 60.463 55.000 6.62 6.62 39.25 3.42
786 795 1.201429 GGCTGGAGGGAGAGGTGAAA 61.201 60.000 0.00 0.00 0.00 2.69
1045 1054 1.134699 CCATGTGTAGATGTGGTCGCT 60.135 52.381 0.00 0.00 0.00 4.93
1100 1109 0.542805 GGCCCCAACATGCAATTCAT 59.457 50.000 0.00 0.00 35.31 2.57
1158 1176 3.584052 CCTCTCTCCGCCGTACCG 61.584 72.222 0.00 0.00 0.00 4.02
1159 1177 2.124403 TCCTCTCTCCGCCGTACC 60.124 66.667 0.00 0.00 0.00 3.34
1160 1178 1.451747 ACTCCTCTCTCCGCCGTAC 60.452 63.158 0.00 0.00 0.00 3.67
1161 1179 1.451567 CACTCCTCTCTCCGCCGTA 60.452 63.158 0.00 0.00 0.00 4.02
1162 1180 2.752238 CACTCCTCTCTCCGCCGT 60.752 66.667 0.00 0.00 0.00 5.68
1215 1233 4.079850 AGGCAGAGCACGAGCAGG 62.080 66.667 7.77 0.00 45.49 4.85
1237 1255 1.336125 GTACGTACGGAGGGAATGGAG 59.664 57.143 21.06 0.00 0.00 3.86
1308 1327 4.304110 CAGAACAGAGCAGTACGGTTAAA 58.696 43.478 0.00 0.00 0.00 1.52
1323 1342 0.514691 GAACGAGCAAGGCAGAACAG 59.485 55.000 0.00 0.00 0.00 3.16
1356 1375 0.038166 GCAACACTCCATTCCCTCCA 59.962 55.000 0.00 0.00 0.00 3.86
1357 1376 0.329596 AGCAACACTCCATTCCCTCC 59.670 55.000 0.00 0.00 0.00 4.30
1358 1377 2.087646 GAAGCAACACTCCATTCCCTC 58.912 52.381 0.00 0.00 0.00 4.30
1359 1378 1.272147 GGAAGCAACACTCCATTCCCT 60.272 52.381 0.00 0.00 34.58 4.20
1360 1379 1.177401 GGAAGCAACACTCCATTCCC 58.823 55.000 0.00 0.00 34.58 3.97
1361 1380 1.541588 GTGGAAGCAACACTCCATTCC 59.458 52.381 0.00 0.00 39.90 3.01
1379 1398 0.314935 AGCAAGGCAAAACCGATGTG 59.685 50.000 0.00 0.00 46.52 3.21
1383 1402 1.098712 AACGAGCAAGGCAAAACCGA 61.099 50.000 0.00 0.00 46.52 4.69
1411 1435 1.202582 GAAGCAGAGGCAGAGTACGAA 59.797 52.381 0.00 0.00 44.61 3.85
1416 1440 2.977178 CGGAAGCAGAGGCAGAGT 59.023 61.111 0.00 0.00 44.61 3.24
1433 1457 1.656569 GCGGATGTACGTACGGAGC 60.657 63.158 20.93 17.58 35.98 4.70
1478 1506 0.251297 AGCTGCTGCAAATACACCCA 60.251 50.000 18.42 0.00 42.74 4.51
1489 1517 1.374758 AGTACGGTTCAGCTGCTGC 60.375 57.895 24.38 11.49 40.05 5.25
1498 1526 0.100146 CCGAGCCTACAGTACGGTTC 59.900 60.000 3.39 0.00 38.97 3.62
1499 1527 1.941999 GCCGAGCCTACAGTACGGTT 61.942 60.000 3.39 0.00 44.48 4.44
1500 1528 2.413142 GCCGAGCCTACAGTACGGT 61.413 63.158 3.62 3.62 44.48 4.83
1507 1535 3.138798 GAGGACGCCGAGCCTACA 61.139 66.667 3.47 0.00 33.84 2.74
1632 1660 3.130340 CGGTCAATAAATTTGGGACCTGG 59.870 47.826 23.61 12.97 44.54 4.45
1636 1664 5.638596 AGTTCGGTCAATAAATTTGGGAC 57.361 39.130 0.00 5.66 0.00 4.46
1637 1665 6.478129 ACTAGTTCGGTCAATAAATTTGGGA 58.522 36.000 0.00 0.00 0.00 4.37
1648 1676 4.330250 ACTGCTACTACTAGTTCGGTCAA 58.670 43.478 0.00 0.00 0.00 3.18
1661 1689 5.100259 GCTTCGACAATTGTACTGCTACTA 58.900 41.667 11.95 0.00 0.00 1.82
1662 1690 3.927142 GCTTCGACAATTGTACTGCTACT 59.073 43.478 11.95 0.00 0.00 2.57
1663 1691 3.241678 CGCTTCGACAATTGTACTGCTAC 60.242 47.826 11.95 0.00 0.00 3.58
1723 1751 5.191722 TCCCAGTGGCTATTATCTTTTCTGT 59.808 40.000 2.61 0.00 0.00 3.41
1744 1772 7.492994 GTCAGTGTCTGATCTAAAATACTTCCC 59.507 40.741 2.80 0.00 42.73 3.97
1808 1836 9.840427 GCTAGTAGCATTAATTTTCTTTTCACA 57.160 29.630 17.47 0.00 41.89 3.58
1821 1849 6.366340 AGAGTAGGTGAGCTAGTAGCATTAA 58.634 40.000 23.77 3.65 45.56 1.40
1841 1869 8.150945 TGCACTAAAGAAAGAGAATTGTAGAGT 58.849 33.333 0.00 0.00 0.00 3.24
1893 1921 2.567169 TCATCAGTCACCAACAGTAGGG 59.433 50.000 0.00 0.00 0.00 3.53
1896 1924 3.761752 TCGATCATCAGTCACCAACAGTA 59.238 43.478 0.00 0.00 0.00 2.74
1938 1966 5.452078 ACACTGGAAAATTACACATGTGG 57.548 39.130 28.64 11.73 34.19 4.17
2132 2163 1.603455 CGGCTGGCCAAAGAAGGAA 60.603 57.895 7.01 0.00 35.37 3.36
2133 2164 1.485294 TACGGCTGGCCAAAGAAGGA 61.485 55.000 7.01 0.00 35.37 3.36
2142 2173 1.611977 GGGATTAAATTACGGCTGGCC 59.388 52.381 0.00 0.00 0.00 5.36
2144 2175 2.621526 GTGGGGATTAAATTACGGCTGG 59.378 50.000 0.00 0.00 0.00 4.85
2162 2193 7.611855 AGAAGATACCTTTATGTTTCCAAGTGG 59.388 37.037 0.00 0.00 31.62 4.00
2170 2201 6.093633 GCCACGAAGAAGATACCTTTATGTTT 59.906 38.462 0.00 0.00 31.62 2.83
2181 2212 0.524816 GCGACGCCACGAAGAAGATA 60.525 55.000 9.14 0.00 35.09 1.98
2182 2213 1.805945 GCGACGCCACGAAGAAGAT 60.806 57.895 9.14 0.00 35.09 2.40
2213 2244 0.754217 ACCATGATGTCCCTGCATGC 60.754 55.000 11.82 11.82 38.40 4.06
2273 2304 4.413520 AGGACCTCTGTATAATTGGCACAT 59.586 41.667 0.00 0.00 39.30 3.21
2274 2305 3.780294 AGGACCTCTGTATAATTGGCACA 59.220 43.478 0.00 0.00 0.00 4.57
2278 2310 4.696479 AGCAGGACCTCTGTATAATTGG 57.304 45.455 0.00 0.00 45.08 3.16
2291 2323 2.604046 ACATATGTCGAAGCAGGACC 57.396 50.000 1.41 0.00 33.46 4.46
2297 2329 2.870411 GGTTGGGTACATATGTCGAAGC 59.130 50.000 12.68 8.48 0.00 3.86
2301 2333 2.992124 TGGGTTGGGTACATATGTCG 57.008 50.000 12.68 0.00 0.00 4.35
2314 2346 3.282021 CATGTATGTCCTCCTTGGGTTG 58.718 50.000 0.00 0.00 36.20 3.77
2315 2347 2.242196 CCATGTATGTCCTCCTTGGGTT 59.758 50.000 0.00 0.00 36.20 4.11
2316 2348 1.846439 CCATGTATGTCCTCCTTGGGT 59.154 52.381 0.00 0.00 36.20 4.51
2317 2349 1.143684 CCCATGTATGTCCTCCTTGGG 59.856 57.143 0.00 0.00 37.26 4.12
2318 2350 1.143684 CCCCATGTATGTCCTCCTTGG 59.856 57.143 0.00 0.00 37.10 3.61
2319 2351 2.126882 TCCCCATGTATGTCCTCCTTG 58.873 52.381 0.00 0.00 0.00 3.61
2320 2352 2.127708 GTCCCCATGTATGTCCTCCTT 58.872 52.381 0.00 0.00 0.00 3.36
2321 2353 1.009552 TGTCCCCATGTATGTCCTCCT 59.990 52.381 0.00 0.00 0.00 3.69
2347 2382 0.598065 GTTTGTCATGTGGGGAGTGC 59.402 55.000 0.00 0.00 0.00 4.40
2353 2388 1.259609 ATGCAGGTTTGTCATGTGGG 58.740 50.000 0.00 0.00 0.00 4.61
2484 2543 8.811017 AGTATGACATCCAATTCGAGATAGAAT 58.189 33.333 0.00 0.00 42.13 2.40
2500 2559 6.344500 ACCTGAAGACATTGAGTATGACATC 58.656 40.000 0.00 0.00 37.69 3.06
2508 2567 6.698380 ACGTAAATACCTGAAGACATTGAGT 58.302 36.000 0.00 0.00 0.00 3.41
2515 2574 2.856557 GCCGACGTAAATACCTGAAGAC 59.143 50.000 0.00 0.00 0.00 3.01
3212 3274 4.717629 CGGCAGCAACCTCGTCGA 62.718 66.667 0.00 0.00 0.00 4.20
3262 3324 1.270839 CCTGGTCACTTCACGGATTGT 60.271 52.381 0.00 0.00 0.00 2.71
3351 3416 5.368145 TCTATACTGCACTATTTGGCCTTG 58.632 41.667 3.32 0.00 0.00 3.61
3358 3423 9.026121 ACCTTCGATATCTATACTGCACTATTT 57.974 33.333 0.34 0.00 0.00 1.40
3426 3491 4.527038 ACGTCTAACAGGGAAGAAGATGAA 59.473 41.667 0.00 0.00 0.00 2.57
3454 3519 1.870580 CGTCCAACTACGCAAACTCCA 60.871 52.381 0.00 0.00 35.87 3.86
3564 3632 5.047519 CCAAGAGCCTTTTCAATCACTGAAT 60.048 40.000 0.00 0.00 43.64 2.57
3568 3636 3.837355 ACCAAGAGCCTTTTCAATCACT 58.163 40.909 0.00 0.00 0.00 3.41
3584 3652 8.558973 AATAGATGAAGAAAGACAGAACCAAG 57.441 34.615 0.00 0.00 0.00 3.61
3702 3770 1.981256 TCAAACTTTCAGCCCCACTC 58.019 50.000 0.00 0.00 0.00 3.51
3722 3790 3.249799 CGCACACACAGTAAAATCTCCAA 59.750 43.478 0.00 0.00 0.00 3.53
3734 3802 2.407090 TCTTCAGATTCGCACACACAG 58.593 47.619 0.00 0.00 0.00 3.66
3779 3850 7.384932 CCCGACTCAAATTTCTAAAATGCTTTT 59.615 33.333 0.00 0.00 36.67 2.27
3783 3854 5.102313 CCCCGACTCAAATTTCTAAAATGC 58.898 41.667 0.00 0.00 0.00 3.56
3784 3855 5.102313 GCCCCGACTCAAATTTCTAAAATG 58.898 41.667 0.00 0.00 0.00 2.32
3885 4520 4.030913 TCATCGGTCCTGGAAATACTTCT 58.969 43.478 0.00 0.00 0.00 2.85
3902 4537 0.873312 ATGCTACGCTGCTGTCATCG 60.873 55.000 0.00 0.00 37.78 3.84
3942 4577 2.678836 CTGACTACTACTGACCCTGACG 59.321 54.545 0.00 0.00 0.00 4.35
4104 4750 1.249195 TCCTCCTCCTCCATCCATCT 58.751 55.000 0.00 0.00 0.00 2.90
4172 4826 1.823899 GTTAAGGGCAGGGGCATCG 60.824 63.158 0.00 0.00 43.71 3.84
4202 4856 1.340248 AGGTAGAGGAACACACACACG 59.660 52.381 0.00 0.00 0.00 4.49
4203 4857 3.470645 AAGGTAGAGGAACACACACAC 57.529 47.619 0.00 0.00 0.00 3.82
4219 4873 6.064717 GTCTATGAGGCCAATCATTAAAGGT 58.935 40.000 12.36 0.00 40.40 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.