Multiple sequence alignment - TraesCS7A01G270000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G270000 chr7A 100.000 3639 0 0 1 3639 275974579 275970941 0.000000e+00 6721
1 TraesCS7A01G270000 chr7D 94.529 2486 90 19 599 3063 256220914 256218454 0.000000e+00 3795
2 TraesCS7A01G270000 chr7D 87.500 320 38 1 1 318 256221225 256220906 5.740000e-98 368
3 TraesCS7A01G270000 chr7B 95.263 1710 71 5 605 2311 234914784 234913082 0.000000e+00 2700
4 TraesCS7A01G270000 chr7B 88.704 602 29 13 2434 3022 234912842 234912267 0.000000e+00 699
5 TraesCS7A01G270000 chr7B 94.444 90 4 1 2361 2450 234913081 234912993 1.760000e-28 137
6 TraesCS7A01G270000 chr6A 92.255 581 34 5 3063 3639 540787205 540786632 0.000000e+00 813
7 TraesCS7A01G270000 chr6A 90.345 580 43 9 3065 3639 613972436 613971865 0.000000e+00 749
8 TraesCS7A01G270000 chr6A 94.194 155 7 1 447 601 471195317 471195165 6.070000e-58 235
9 TraesCS7A01G270000 chr6D 90.830 578 41 6 3065 3639 34401506 34400938 0.000000e+00 763
10 TraesCS7A01G270000 chr6D 90.206 582 42 9 3062 3639 159519302 159518732 0.000000e+00 745
11 TraesCS7A01G270000 chr6D 90.034 582 45 6 3063 3639 464684149 464683576 0.000000e+00 741
12 TraesCS7A01G270000 chr6D 90.034 582 43 9 3063 3639 73808248 73807677 0.000000e+00 739
13 TraesCS7A01G270000 chr6D 89.845 581 48 6 3062 3639 86021011 86021583 0.000000e+00 736
14 TraesCS7A01G270000 chr6D 89.845 581 46 7 3062 3637 343675558 343674986 0.000000e+00 734
15 TraesCS7A01G270000 chr6D 83.981 206 30 3 7 212 464577617 464577415 1.030000e-45 195
16 TraesCS7A01G270000 chr6D 74.157 267 55 10 1796 2055 127379935 127379676 8.320000e-17 99
17 TraesCS7A01G270000 chr5D 90.501 579 42 7 3066 3639 349876573 349877143 0.000000e+00 752
18 TraesCS7A01G270000 chr4A 94.194 155 7 1 447 601 536664110 536664262 6.070000e-58 235
19 TraesCS7A01G270000 chr4A 93.130 131 8 1 321 450 9457752 9457882 1.330000e-44 191
20 TraesCS7A01G270000 chr5A 94.156 154 7 1 447 600 414976475 414976324 2.180000e-57 233
21 TraesCS7A01G270000 chr5A 93.548 155 8 1 447 601 330283845 330283693 2.830000e-56 230
22 TraesCS7A01G270000 chr3A 94.156 154 8 1 447 599 697524518 697524365 2.180000e-57 233
23 TraesCS7A01G270000 chr3A 93.548 155 8 1 447 601 184272568 184272416 2.830000e-56 230
24 TraesCS7A01G270000 chr3A 84.434 212 31 2 1 212 662617567 662617776 1.320000e-49 207
25 TraesCS7A01G270000 chr3A 87.395 119 11 4 319 433 90092432 90092314 2.280000e-27 134
26 TraesCS7A01G270000 chr2A 94.156 154 8 1 447 599 519403943 519403790 2.180000e-57 233
27 TraesCS7A01G270000 chr1A 94.118 153 9 0 447 599 352839870 352839718 2.180000e-57 233
28 TraesCS7A01G270000 chr1A 94.156 154 8 1 447 600 454420320 454420472 2.180000e-57 233
29 TraesCS7A01G270000 chr4D 85.915 213 29 1 1 213 549583 549372 3.660000e-55 226
30 TraesCS7A01G270000 chr6B 85.377 212 28 3 1 212 44245631 44245839 2.200000e-52 217
31 TraesCS7A01G270000 chr6B 84.906 212 29 3 1 212 320542606 320542814 1.020000e-50 211
32 TraesCS7A01G270000 chr2B 85.024 207 27 4 7 212 51079657 51079454 1.320000e-49 207
33 TraesCS7A01G270000 chr2B 84.390 205 29 3 8 212 518792925 518793126 7.970000e-47 198
34 TraesCS7A01G270000 chr2B 87.143 140 12 4 315 450 38668881 38668744 1.750000e-33 154
35 TraesCS7A01G270000 chr2B 87.097 124 12 3 329 449 346673032 346673154 1.760000e-28 137
36 TraesCS7A01G270000 chr3B 84.390 205 29 3 8 212 814498551 814498752 7.970000e-47 198
37 TraesCS7A01G270000 chr2D 87.407 135 13 3 319 450 558182227 558182094 6.290000e-33 152
38 TraesCS7A01G270000 chr2D 87.313 134 12 4 321 450 12723865 12723733 8.140000e-32 148
39 TraesCS7A01G270000 chr2D 85.926 135 14 3 319 450 40783186 40783054 4.900000e-29 139
40 TraesCS7A01G270000 chr1B 86.667 135 13 4 319 450 688690383 688690515 1.050000e-30 145
41 TraesCS7A01G270000 chr5B 84.444 135 15 6 319 450 17846953 17846822 1.060000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G270000 chr7A 275970941 275974579 3638 True 6721.000000 6721 100.000000 1 3639 1 chr7A.!!$R1 3638
1 TraesCS7A01G270000 chr7D 256218454 256221225 2771 True 2081.500000 3795 91.014500 1 3063 2 chr7D.!!$R1 3062
2 TraesCS7A01G270000 chr7B 234912267 234914784 2517 True 1178.666667 2700 92.803667 605 3022 3 chr7B.!!$R1 2417
3 TraesCS7A01G270000 chr6A 540786632 540787205 573 True 813.000000 813 92.255000 3063 3639 1 chr6A.!!$R2 576
4 TraesCS7A01G270000 chr6A 613971865 613972436 571 True 749.000000 749 90.345000 3065 3639 1 chr6A.!!$R3 574
5 TraesCS7A01G270000 chr6D 34400938 34401506 568 True 763.000000 763 90.830000 3065 3639 1 chr6D.!!$R1 574
6 TraesCS7A01G270000 chr6D 159518732 159519302 570 True 745.000000 745 90.206000 3062 3639 1 chr6D.!!$R4 577
7 TraesCS7A01G270000 chr6D 464683576 464684149 573 True 741.000000 741 90.034000 3063 3639 1 chr6D.!!$R7 576
8 TraesCS7A01G270000 chr6D 73807677 73808248 571 True 739.000000 739 90.034000 3063 3639 1 chr6D.!!$R2 576
9 TraesCS7A01G270000 chr6D 86021011 86021583 572 False 736.000000 736 89.845000 3062 3639 1 chr6D.!!$F1 577
10 TraesCS7A01G270000 chr6D 343674986 343675558 572 True 734.000000 734 89.845000 3062 3637 1 chr6D.!!$R5 575
11 TraesCS7A01G270000 chr5D 349876573 349877143 570 False 752.000000 752 90.501000 3066 3639 1 chr5D.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 380 0.032117 TGAGACCCGTCCTGATGGAT 60.032 55.0 6.98 0.0 45.29 3.41 F
762 765 0.174845 TGAATACTCGGGTGCCTTCG 59.825 55.0 0.00 0.0 0.00 3.79 F
1656 1667 0.037419 GTGATTTTGCCCGCCATTGT 60.037 50.0 0.00 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 1562 0.533085 TGATCACCGTCGTTTTGGCA 60.533 50.000 0.00 0.0 0.00 4.92 R
2206 2217 1.203300 TGGATCCTCCTGAAGGTCACA 60.203 52.381 14.23 0.0 46.32 3.58 R
3009 3199 0.999406 TAGCGATTGAAAGTGAGCGC 59.001 50.000 0.00 0.0 44.22 5.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.433615 ACTTGCGTGCTTCTCTGATTTAC 59.566 43.478 0.00 0.00 0.00 2.01
71 72 1.429463 AGTTAGCTGCTTTTCGACGG 58.571 50.000 7.79 0.00 0.00 4.79
84 85 5.634020 GCTTTTCGACGGCTATGTATCTTAT 59.366 40.000 0.00 0.00 0.00 1.73
86 87 5.952526 TTCGACGGCTATGTATCTTATCA 57.047 39.130 0.00 0.00 0.00 2.15
89 90 5.414765 TCGACGGCTATGTATCTTATCATGT 59.585 40.000 0.00 0.00 0.00 3.21
91 92 6.033937 CGACGGCTATGTATCTTATCATGTTG 59.966 42.308 0.00 0.00 0.00 3.33
131 132 7.095607 CGGTTACTTGTGATCTATATTCTTGGC 60.096 40.741 0.00 0.00 0.00 4.52
153 154 4.173256 CCGGTTGATGGCTTTGTTAATTC 58.827 43.478 0.00 0.00 0.00 2.17
157 158 6.201806 CGGTTGATGGCTTTGTTAATTCAAAA 59.798 34.615 0.00 0.00 36.96 2.44
159 160 8.567104 GGTTGATGGCTTTGTTAATTCAAAATT 58.433 29.630 0.00 0.00 36.96 1.82
177 178 1.400737 TTAAGCTAGTCTCGAGCCCC 58.599 55.000 7.81 0.00 41.06 5.80
181 182 0.825840 GCTAGTCTCGAGCCCCATCT 60.826 60.000 7.81 1.95 33.60 2.90
184 185 0.324738 AGTCTCGAGCCCCATCTCAA 60.325 55.000 7.81 0.00 33.41 3.02
191 192 2.115291 GCCCCATCTCAAACTCGGC 61.115 63.158 0.00 0.00 0.00 5.54
194 195 0.250234 CCCATCTCAAACTCGGCTGA 59.750 55.000 0.00 0.00 0.00 4.26
233 234 0.320374 TTCTCTTGTGTACGGGCCAG 59.680 55.000 4.39 1.85 0.00 4.85
254 255 2.453242 AGGGTTCGAGCCTCACTTT 58.547 52.632 18.44 0.00 43.92 2.66
261 262 3.685139 TCGAGCCTCACTTTCATCTTT 57.315 42.857 0.00 0.00 0.00 2.52
262 263 4.008074 TCGAGCCTCACTTTCATCTTTT 57.992 40.909 0.00 0.00 0.00 2.27
309 312 1.541588 CCAACTGGTCTTTTAGCCTGC 59.458 52.381 0.00 0.00 0.00 4.85
310 313 2.508526 CAACTGGTCTTTTAGCCTGCT 58.491 47.619 0.00 0.00 0.00 4.24
311 314 2.191128 ACTGGTCTTTTAGCCTGCTG 57.809 50.000 0.97 0.00 0.00 4.41
312 315 1.421646 ACTGGTCTTTTAGCCTGCTGT 59.578 47.619 0.97 0.00 0.00 4.40
313 316 2.079925 CTGGTCTTTTAGCCTGCTGTC 58.920 52.381 0.97 0.00 0.00 3.51
314 317 1.271379 TGGTCTTTTAGCCTGCTGTCC 60.271 52.381 0.97 0.00 0.00 4.02
315 318 1.454201 GTCTTTTAGCCTGCTGTCCC 58.546 55.000 0.97 0.00 0.00 4.46
316 319 1.064003 TCTTTTAGCCTGCTGTCCCA 58.936 50.000 0.97 0.00 0.00 4.37
317 320 1.423541 TCTTTTAGCCTGCTGTCCCAA 59.576 47.619 0.97 0.00 0.00 4.12
318 321 1.815003 CTTTTAGCCTGCTGTCCCAAG 59.185 52.381 0.97 0.00 0.00 3.61
319 322 0.038166 TTTAGCCTGCTGTCCCAAGG 59.962 55.000 0.97 0.00 0.00 3.61
320 323 0.840288 TTAGCCTGCTGTCCCAAGGA 60.840 55.000 0.97 0.00 0.00 3.36
321 324 0.840288 TAGCCTGCTGTCCCAAGGAA 60.840 55.000 0.97 0.00 31.38 3.36
322 325 1.228552 GCCTGCTGTCCCAAGGAAA 60.229 57.895 0.00 0.00 31.38 3.13
323 326 0.827507 GCCTGCTGTCCCAAGGAAAA 60.828 55.000 0.00 0.00 31.38 2.29
324 327 1.703411 CCTGCTGTCCCAAGGAAAAA 58.297 50.000 0.00 0.00 31.38 1.94
348 351 8.888579 AAAATTATATGAGACCAGGTCTTACG 57.111 34.615 23.78 0.00 43.53 3.18
349 352 6.591750 ATTATATGAGACCAGGTCTTACGG 57.408 41.667 23.78 0.00 43.53 4.02
350 353 2.233305 ATGAGACCAGGTCTTACGGT 57.767 50.000 23.78 1.68 43.53 4.83
351 354 2.005370 TGAGACCAGGTCTTACGGTT 57.995 50.000 23.78 0.00 43.53 4.44
352 355 3.159213 TGAGACCAGGTCTTACGGTTA 57.841 47.619 23.78 2.19 43.53 2.85
353 356 3.087031 TGAGACCAGGTCTTACGGTTAG 58.913 50.000 23.78 0.00 43.53 2.34
354 357 3.087781 GAGACCAGGTCTTACGGTTAGT 58.912 50.000 23.78 0.00 43.53 2.24
355 358 4.263462 TGAGACCAGGTCTTACGGTTAGTA 60.263 45.833 23.78 0.00 43.53 1.82
356 359 4.268359 AGACCAGGTCTTACGGTTAGTAG 58.732 47.826 17.31 0.00 40.28 2.57
357 360 3.359950 ACCAGGTCTTACGGTTAGTAGG 58.640 50.000 0.00 0.00 36.56 3.18
358 361 3.245407 ACCAGGTCTTACGGTTAGTAGGT 60.245 47.826 0.00 0.00 36.56 3.08
359 362 3.129988 CCAGGTCTTACGGTTAGTAGGTG 59.870 52.174 0.00 0.00 36.56 4.00
360 363 4.012374 CAGGTCTTACGGTTAGTAGGTGA 58.988 47.826 0.00 0.00 36.56 4.02
361 364 4.096081 CAGGTCTTACGGTTAGTAGGTGAG 59.904 50.000 0.00 0.00 36.56 3.51
362 365 4.018960 AGGTCTTACGGTTAGTAGGTGAGA 60.019 45.833 0.00 0.00 36.56 3.27
363 366 4.095632 GGTCTTACGGTTAGTAGGTGAGAC 59.904 50.000 6.74 6.74 38.11 3.36
364 367 4.095632 GTCTTACGGTTAGTAGGTGAGACC 59.904 50.000 4.55 0.00 35.20 3.85
365 368 1.844687 ACGGTTAGTAGGTGAGACCC 58.155 55.000 0.00 0.00 39.75 4.46
366 369 0.737219 CGGTTAGTAGGTGAGACCCG 59.263 60.000 0.00 0.00 39.75 5.28
367 370 1.844687 GGTTAGTAGGTGAGACCCGT 58.155 55.000 0.00 0.00 39.75 5.28
368 371 1.747924 GGTTAGTAGGTGAGACCCGTC 59.252 57.143 0.00 0.00 39.75 4.79
369 372 1.747924 GTTAGTAGGTGAGACCCGTCC 59.252 57.143 0.00 0.00 39.75 4.79
370 373 1.293062 TAGTAGGTGAGACCCGTCCT 58.707 55.000 0.00 0.00 39.75 3.85
371 374 0.323542 AGTAGGTGAGACCCGTCCTG 60.324 60.000 0.00 0.00 39.75 3.86
372 375 0.323178 GTAGGTGAGACCCGTCCTGA 60.323 60.000 0.00 0.00 39.75 3.86
373 376 0.629596 TAGGTGAGACCCGTCCTGAT 59.370 55.000 0.00 0.00 39.75 2.90
374 377 0.972983 AGGTGAGACCCGTCCTGATG 60.973 60.000 0.00 0.00 39.75 3.07
375 378 1.517832 GTGAGACCCGTCCTGATGG 59.482 63.158 0.00 0.00 37.23 3.51
376 379 0.970937 GTGAGACCCGTCCTGATGGA 60.971 60.000 6.98 0.00 39.90 3.41
377 380 0.032117 TGAGACCCGTCCTGATGGAT 60.032 55.000 6.98 0.00 45.29 3.41
378 381 0.390860 GAGACCCGTCCTGATGGATG 59.609 60.000 6.98 0.00 45.29 3.51
386 389 3.032017 GTCCTGATGGATGATACGTGG 57.968 52.381 0.00 0.00 45.29 4.94
387 390 1.344438 TCCTGATGGATGATACGTGGC 59.656 52.381 0.00 0.00 37.46 5.01
388 391 1.070601 CCTGATGGATGATACGTGGCA 59.929 52.381 0.00 0.00 34.57 4.92
389 392 2.289882 CCTGATGGATGATACGTGGCAT 60.290 50.000 0.00 0.74 34.57 4.40
390 393 3.405831 CTGATGGATGATACGTGGCATT 58.594 45.455 0.00 0.00 0.00 3.56
391 394 3.402110 TGATGGATGATACGTGGCATTC 58.598 45.455 0.00 0.66 0.00 2.67
392 395 2.998316 TGGATGATACGTGGCATTCA 57.002 45.000 8.79 8.79 0.00 2.57
393 396 2.560504 TGGATGATACGTGGCATTCAC 58.439 47.619 8.79 3.76 42.74 3.18
394 397 2.093235 TGGATGATACGTGGCATTCACA 60.093 45.455 8.79 5.73 46.36 3.58
395 398 2.942376 GGATGATACGTGGCATTCACAA 59.058 45.455 0.00 0.00 46.36 3.33
396 399 3.376859 GGATGATACGTGGCATTCACAAA 59.623 43.478 0.00 0.00 46.36 2.83
397 400 4.036734 GGATGATACGTGGCATTCACAAAT 59.963 41.667 0.00 0.00 46.36 2.32
398 401 4.614555 TGATACGTGGCATTCACAAATC 57.385 40.909 0.00 0.00 46.36 2.17
399 402 4.006319 TGATACGTGGCATTCACAAATCA 58.994 39.130 0.00 0.00 46.36 2.57
400 403 4.639755 TGATACGTGGCATTCACAAATCAT 59.360 37.500 0.00 0.00 46.36 2.45
401 404 5.819901 TGATACGTGGCATTCACAAATCATA 59.180 36.000 0.00 0.00 46.36 2.15
402 405 6.317391 TGATACGTGGCATTCACAAATCATAA 59.683 34.615 0.00 0.00 46.36 1.90
403 406 5.384063 ACGTGGCATTCACAAATCATAAA 57.616 34.783 0.00 0.00 46.36 1.40
404 407 5.401550 ACGTGGCATTCACAAATCATAAAG 58.598 37.500 0.00 0.00 46.36 1.85
405 408 4.266029 CGTGGCATTCACAAATCATAAAGC 59.734 41.667 0.00 0.00 46.36 3.51
406 409 5.170021 GTGGCATTCACAAATCATAAAGCA 58.830 37.500 0.00 0.00 45.39 3.91
407 410 5.813672 GTGGCATTCACAAATCATAAAGCAT 59.186 36.000 0.00 0.00 45.39 3.79
408 411 6.019318 GTGGCATTCACAAATCATAAAGCATC 60.019 38.462 0.00 0.00 45.39 3.91
409 412 5.464389 GGCATTCACAAATCATAAAGCATCC 59.536 40.000 0.00 0.00 0.00 3.51
410 413 5.464389 GCATTCACAAATCATAAAGCATCCC 59.536 40.000 0.00 0.00 0.00 3.85
411 414 5.596836 TTCACAAATCATAAAGCATCCCC 57.403 39.130 0.00 0.00 0.00 4.81
412 415 3.960102 TCACAAATCATAAAGCATCCCCC 59.040 43.478 0.00 0.00 0.00 5.40
413 416 3.705579 CACAAATCATAAAGCATCCCCCA 59.294 43.478 0.00 0.00 0.00 4.96
414 417 3.706086 ACAAATCATAAAGCATCCCCCAC 59.294 43.478 0.00 0.00 0.00 4.61
415 418 2.683211 ATCATAAAGCATCCCCCACC 57.317 50.000 0.00 0.00 0.00 4.61
416 419 0.555769 TCATAAAGCATCCCCCACCC 59.444 55.000 0.00 0.00 0.00 4.61
417 420 0.469892 CATAAAGCATCCCCCACCCC 60.470 60.000 0.00 0.00 0.00 4.95
418 421 2.006805 ATAAAGCATCCCCCACCCCG 62.007 60.000 0.00 0.00 0.00 5.73
420 423 4.843331 AGCATCCCCCACCCCGAT 62.843 66.667 0.00 0.00 0.00 4.18
421 424 3.820843 GCATCCCCCACCCCGATT 61.821 66.667 0.00 0.00 0.00 3.34
422 425 3.015383 CATCCCCCACCCCGATTT 58.985 61.111 0.00 0.00 0.00 2.17
423 426 2.002018 GCATCCCCCACCCCGATTTA 62.002 60.000 0.00 0.00 0.00 1.40
424 427 0.553819 CATCCCCCACCCCGATTTAA 59.446 55.000 0.00 0.00 0.00 1.52
425 428 1.063567 CATCCCCCACCCCGATTTAAA 60.064 52.381 0.00 0.00 0.00 1.52
426 429 1.082326 TCCCCCACCCCGATTTAAAA 58.918 50.000 0.00 0.00 0.00 1.52
427 430 1.646977 TCCCCCACCCCGATTTAAAAT 59.353 47.619 0.00 0.00 0.00 1.82
428 431 2.036387 CCCCCACCCCGATTTAAAATC 58.964 52.381 0.00 0.00 0.00 2.17
429 432 2.624557 CCCCCACCCCGATTTAAAATCA 60.625 50.000 0.00 0.00 0.00 2.57
430 433 2.693074 CCCCACCCCGATTTAAAATCAG 59.307 50.000 0.00 0.00 0.00 2.90
431 434 2.693074 CCCACCCCGATTTAAAATCAGG 59.307 50.000 0.00 0.00 0.00 3.86
432 435 2.693074 CCACCCCGATTTAAAATCAGGG 59.307 50.000 10.62 10.62 40.73 4.45
452 455 3.850752 GGGGGAGAGAGATTAGATGACA 58.149 50.000 0.00 0.00 0.00 3.58
453 456 3.576550 GGGGGAGAGAGATTAGATGACAC 59.423 52.174 0.00 0.00 0.00 3.67
454 457 3.254657 GGGGAGAGAGATTAGATGACACG 59.745 52.174 0.00 0.00 0.00 4.49
455 458 3.886505 GGGAGAGAGATTAGATGACACGT 59.113 47.826 0.00 0.00 0.00 4.49
456 459 4.261405 GGGAGAGAGATTAGATGACACGTG 60.261 50.000 15.48 15.48 0.00 4.49
457 460 4.261405 GGAGAGAGATTAGATGACACGTGG 60.261 50.000 21.57 1.66 0.00 4.94
458 461 3.067461 AGAGAGATTAGATGACACGTGGC 59.933 47.826 21.57 19.24 0.00 5.01
459 462 2.760650 AGAGATTAGATGACACGTGGCA 59.239 45.455 29.28 29.28 37.54 4.92
461 464 4.122776 GAGATTAGATGACACGTGGCATT 58.877 43.478 36.07 26.04 45.42 3.56
462 465 4.122776 AGATTAGATGACACGTGGCATTC 58.877 43.478 36.07 27.92 45.42 2.67
463 466 3.326836 TTAGATGACACGTGGCATTCA 57.673 42.857 36.07 23.89 45.42 2.57
464 467 1.442769 AGATGACACGTGGCATTCAC 58.557 50.000 36.07 23.79 45.42 3.18
465 468 1.155889 GATGACACGTGGCATTCACA 58.844 50.000 36.07 9.07 45.42 3.58
466 469 1.535028 GATGACACGTGGCATTCACAA 59.465 47.619 36.07 8.22 45.42 3.33
467 470 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
468 471 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
469 472 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
470 473 1.952990 ACACGTGGCATTCACAAATCA 59.047 42.857 21.57 0.00 46.36 2.57
471 474 2.287547 ACACGTGGCATTCACAAATCAC 60.288 45.455 21.57 0.00 46.36 3.06
472 475 1.952990 ACGTGGCATTCACAAATCACA 59.047 42.857 0.00 0.00 46.36 3.58
473 476 2.360483 ACGTGGCATTCACAAATCACAA 59.640 40.909 0.00 0.00 46.36 3.33
474 477 3.181482 ACGTGGCATTCACAAATCACAAA 60.181 39.130 0.00 0.00 46.36 2.83
475 478 3.426191 CGTGGCATTCACAAATCACAAAG 59.574 43.478 0.00 0.00 46.36 2.77
476 479 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
477 480 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
478 481 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
479 482 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
480 483 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
481 484 6.094719 GCATTCACAAATCACAAAGCATCTA 58.905 36.000 0.00 0.00 0.00 1.98
482 485 6.587226 GCATTCACAAATCACAAAGCATCTAA 59.413 34.615 0.00 0.00 0.00 2.10
483 486 7.277098 GCATTCACAAATCACAAAGCATCTAAT 59.723 33.333 0.00 0.00 0.00 1.73
484 487 8.804743 CATTCACAAATCACAAAGCATCTAATC 58.195 33.333 0.00 0.00 0.00 1.75
485 488 7.692460 TCACAAATCACAAAGCATCTAATCT 57.308 32.000 0.00 0.00 0.00 2.40
486 489 7.755591 TCACAAATCACAAAGCATCTAATCTC 58.244 34.615 0.00 0.00 0.00 2.75
487 490 7.609146 TCACAAATCACAAAGCATCTAATCTCT 59.391 33.333 0.00 0.00 0.00 3.10
488 491 7.909121 CACAAATCACAAAGCATCTAATCTCTC 59.091 37.037 0.00 0.00 0.00 3.20
489 492 7.066766 ACAAATCACAAAGCATCTAATCTCTCC 59.933 37.037 0.00 0.00 0.00 3.71
490 493 5.028549 TCACAAAGCATCTAATCTCTCCC 57.971 43.478 0.00 0.00 0.00 4.30
491 494 4.718774 TCACAAAGCATCTAATCTCTCCCT 59.281 41.667 0.00 0.00 0.00 4.20
492 495 5.055812 CACAAAGCATCTAATCTCTCCCTC 58.944 45.833 0.00 0.00 0.00 4.30
493 496 4.102367 ACAAAGCATCTAATCTCTCCCTCC 59.898 45.833 0.00 0.00 0.00 4.30
494 497 2.901291 AGCATCTAATCTCTCCCTCCC 58.099 52.381 0.00 0.00 0.00 4.30
495 498 1.905894 GCATCTAATCTCTCCCTCCCC 59.094 57.143 0.00 0.00 0.00 4.81
496 499 2.494439 GCATCTAATCTCTCCCTCCCCT 60.494 54.545 0.00 0.00 0.00 4.79
497 500 3.172339 CATCTAATCTCTCCCTCCCCTG 58.828 54.545 0.00 0.00 0.00 4.45
498 501 2.514696 TCTAATCTCTCCCTCCCCTGA 58.485 52.381 0.00 0.00 0.00 3.86
499 502 3.075181 TCTAATCTCTCCCTCCCCTGAT 58.925 50.000 0.00 0.00 0.00 2.90
500 503 2.906169 AATCTCTCCCTCCCCTGATT 57.094 50.000 0.00 0.00 0.00 2.57
501 504 2.906169 ATCTCTCCCTCCCCTGATTT 57.094 50.000 0.00 0.00 0.00 2.17
502 505 2.668850 TCTCTCCCTCCCCTGATTTT 57.331 50.000 0.00 0.00 0.00 1.82
503 506 3.795755 TCTCTCCCTCCCCTGATTTTA 57.204 47.619 0.00 0.00 0.00 1.52
504 507 4.088634 TCTCTCCCTCCCCTGATTTTAA 57.911 45.455 0.00 0.00 0.00 1.52
505 508 4.040755 TCTCTCCCTCCCCTGATTTTAAG 58.959 47.826 0.00 0.00 0.00 1.85
506 509 3.783082 CTCTCCCTCCCCTGATTTTAAGT 59.217 47.826 0.00 0.00 0.00 2.24
507 510 3.780850 TCTCCCTCCCCTGATTTTAAGTC 59.219 47.826 0.00 0.00 0.00 3.01
508 511 2.504175 TCCCTCCCCTGATTTTAAGTCG 59.496 50.000 0.00 0.00 0.00 4.18
509 512 2.421529 CCCTCCCCTGATTTTAAGTCGG 60.422 54.545 0.00 0.00 0.00 4.79
510 513 2.421529 CCTCCCCTGATTTTAAGTCGGG 60.422 54.545 8.19 8.19 41.02 5.14
514 517 2.365582 CCTGATTTTAAGTCGGGGTGG 58.634 52.381 7.36 0.00 38.27 4.61
515 518 2.365582 CTGATTTTAAGTCGGGGTGGG 58.634 52.381 0.00 0.00 0.00 4.61
516 519 1.004979 TGATTTTAAGTCGGGGTGGGG 59.995 52.381 0.00 0.00 0.00 4.96
517 520 0.333652 ATTTTAAGTCGGGGTGGGGG 59.666 55.000 0.00 0.00 0.00 5.40
518 521 0.771339 TTTTAAGTCGGGGTGGGGGA 60.771 55.000 0.00 0.00 0.00 4.81
519 522 0.550638 TTTAAGTCGGGGTGGGGGAT 60.551 55.000 0.00 0.00 0.00 3.85
520 523 1.276140 TTAAGTCGGGGTGGGGGATG 61.276 60.000 0.00 0.00 0.00 3.51
524 527 4.060667 CGGGGTGGGGGATGCTTT 62.061 66.667 0.00 0.00 0.00 3.51
525 528 2.364186 GGGGTGGGGGATGCTTTG 60.364 66.667 0.00 0.00 0.00 2.77
526 529 2.445155 GGGTGGGGGATGCTTTGT 59.555 61.111 0.00 0.00 0.00 2.83
527 530 1.984026 GGGTGGGGGATGCTTTGTG 60.984 63.158 0.00 0.00 0.00 3.33
528 531 1.076549 GGTGGGGGATGCTTTGTGA 59.923 57.895 0.00 0.00 0.00 3.58
529 532 0.324645 GGTGGGGGATGCTTTGTGAT 60.325 55.000 0.00 0.00 0.00 3.06
530 533 1.560505 GTGGGGGATGCTTTGTGATT 58.439 50.000 0.00 0.00 0.00 2.57
531 534 1.901833 GTGGGGGATGCTTTGTGATTT 59.098 47.619 0.00 0.00 0.00 2.17
532 535 1.901159 TGGGGGATGCTTTGTGATTTG 59.099 47.619 0.00 0.00 0.00 2.32
533 536 1.901833 GGGGGATGCTTTGTGATTTGT 59.098 47.619 0.00 0.00 0.00 2.83
534 537 2.354003 GGGGGATGCTTTGTGATTTGTG 60.354 50.000 0.00 0.00 0.00 3.33
535 538 2.562298 GGGGATGCTTTGTGATTTGTGA 59.438 45.455 0.00 0.00 0.00 3.58
536 539 3.006752 GGGGATGCTTTGTGATTTGTGAA 59.993 43.478 0.00 0.00 0.00 3.18
537 540 4.322953 GGGGATGCTTTGTGATTTGTGAAT 60.323 41.667 0.00 0.00 0.00 2.57
538 541 4.628333 GGGATGCTTTGTGATTTGTGAATG 59.372 41.667 0.00 0.00 0.00 2.67
539 542 4.092383 GGATGCTTTGTGATTTGTGAATGC 59.908 41.667 0.00 0.00 0.00 3.56
540 543 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
541 544 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
542 545 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
551 554 2.857592 GTGAATGCCACATGTCATCC 57.142 50.000 0.00 0.00 45.03 3.51
552 555 2.093890 GTGAATGCCACATGTCATCCA 58.906 47.619 0.00 0.00 45.03 3.41
553 556 2.691526 GTGAATGCCACATGTCATCCAT 59.308 45.455 0.00 0.00 45.03 3.41
554 557 2.953648 TGAATGCCACATGTCATCCATC 59.046 45.455 0.00 0.00 0.00 3.51
555 558 2.740506 ATGCCACATGTCATCCATCA 57.259 45.000 0.00 0.00 0.00 3.07
556 559 2.047002 TGCCACATGTCATCCATCAG 57.953 50.000 0.00 0.00 0.00 2.90
557 560 1.560611 TGCCACATGTCATCCATCAGA 59.439 47.619 0.00 0.00 0.00 3.27
558 561 2.026075 TGCCACATGTCATCCATCAGAA 60.026 45.455 0.00 0.00 0.00 3.02
559 562 3.220110 GCCACATGTCATCCATCAGAAT 58.780 45.455 0.00 0.00 0.00 2.40
560 563 3.004419 GCCACATGTCATCCATCAGAATG 59.996 47.826 0.00 0.00 37.54 2.67
564 567 3.565764 TGTCATCCATCAGAATGGGTC 57.434 47.619 4.68 0.00 43.29 4.46
565 568 3.117745 TGTCATCCATCAGAATGGGTCT 58.882 45.455 4.68 0.00 43.29 3.85
566 569 3.135348 TGTCATCCATCAGAATGGGTCTC 59.865 47.826 4.68 0.00 43.29 3.36
567 570 3.135348 GTCATCCATCAGAATGGGTCTCA 59.865 47.826 4.68 0.00 43.29 3.27
568 571 3.135348 TCATCCATCAGAATGGGTCTCAC 59.865 47.826 4.68 0.00 43.29 3.51
569 572 3.117745 ATCCATCAGAATGGGTCTCACA 58.882 45.455 4.68 0.00 43.29 3.58
570 573 3.720526 ATCCATCAGAATGGGTCTCACAT 59.279 43.478 4.68 0.00 43.29 3.21
571 574 4.445879 ATCCATCAGAATGGGTCTCACATG 60.446 45.833 4.68 0.00 43.29 3.21
572 575 4.146745 CATCAGAATGGGTCTCACATGA 57.853 45.455 0.00 0.00 32.70 3.07
573 576 3.900966 TCAGAATGGGTCTCACATGAG 57.099 47.619 0.00 2.24 39.21 2.90
574 577 3.444029 TCAGAATGGGTCTCACATGAGA 58.556 45.455 7.52 7.52 42.39 3.27
582 585 2.612285 TCTCACATGAGACCTGGTCT 57.388 50.000 28.70 28.70 45.48 3.85
597 600 8.341892 AGACCTGGTCTCATAAAATTCTTTTC 57.658 34.615 23.49 0.00 38.71 2.29
638 641 4.261197 GCGTCCTATTTCCAATTAAGCCAG 60.261 45.833 0.00 0.00 0.00 4.85
653 656 0.514691 GCCAGCTGAGTTCGAAACTG 59.485 55.000 17.39 3.08 43.03 3.16
674 677 2.169978 GCCCTCCTACCTAACAACGAAT 59.830 50.000 0.00 0.00 0.00 3.34
733 736 3.896648 TTTCTTGCCTCAACATTCGTC 57.103 42.857 0.00 0.00 0.00 4.20
752 755 3.555956 CGTCAAAGGGGATTGAATACTCG 59.444 47.826 0.00 0.00 40.76 4.18
762 765 0.174845 TGAATACTCGGGTGCCTTCG 59.825 55.000 0.00 0.00 0.00 3.79
803 806 9.607285 TTTTGCAGAAGAAACGAATAGATTTAC 57.393 29.630 0.00 0.00 0.00 2.01
897 901 6.485648 GGAGGAGGTTACGTTTATATTTGCAT 59.514 38.462 0.00 0.00 0.00 3.96
970 977 6.437477 ACATATAAGATACGAAGATCCCTGCA 59.563 38.462 0.00 0.00 0.00 4.41
975 982 0.247736 ACGAAGATCCCTGCAGACAC 59.752 55.000 17.39 3.67 0.00 3.67
978 985 2.223688 CGAAGATCCCTGCAGACACTAG 60.224 54.545 17.39 0.00 0.00 2.57
1044 1051 1.133976 GTCCTCATGGTCCCCTTGATG 60.134 57.143 0.00 0.00 37.13 3.07
1428 1439 2.101575 GTGATCGACGGCGTGCTA 59.898 61.111 21.19 1.89 38.98 3.49
1551 1562 1.518572 CGGCGCTCGGACTAACAAT 60.519 57.895 7.64 0.00 34.75 2.71
1614 1625 6.324561 TCGATCAAATTTGTGTCATTTCCA 57.675 33.333 17.47 0.00 0.00 3.53
1656 1667 0.037419 GTGATTTTGCCCGCCATTGT 60.037 50.000 0.00 0.00 0.00 2.71
1717 1728 4.778143 GGCCTGCGGTTCGTGGAT 62.778 66.667 0.00 0.00 0.00 3.41
2135 2146 1.078426 GTGTCCAACCCCATCCTCG 60.078 63.158 0.00 0.00 0.00 4.63
2206 2217 2.107750 CGGGTGCAGATCAGCGAT 59.892 61.111 5.56 0.00 43.83 4.58
2317 2328 3.195698 GACGGCATCAACCTCCGC 61.196 66.667 0.00 0.00 46.49 5.54
2415 2426 0.250295 TGGGTTCAAGAAGCTCACGG 60.250 55.000 11.27 0.00 38.72 4.94
2416 2427 0.034896 GGGTTCAAGAAGCTCACGGA 59.965 55.000 11.27 0.00 38.72 4.69
2425 2436 2.842394 AAGCTCACGGACTGCCATCG 62.842 60.000 0.00 0.00 0.00 3.84
2442 2453 2.459060 TCGGACGCTGAATAACCAAA 57.541 45.000 0.00 0.00 0.00 3.28
2444 2455 1.129811 CGGACGCTGAATAACCAAACC 59.870 52.381 0.00 0.00 0.00 3.27
2445 2456 2.156098 GGACGCTGAATAACCAAACCA 58.844 47.619 0.00 0.00 0.00 3.67
2446 2457 2.752903 GGACGCTGAATAACCAAACCAT 59.247 45.455 0.00 0.00 0.00 3.55
2447 2458 3.192633 GGACGCTGAATAACCAAACCATT 59.807 43.478 0.00 0.00 0.00 3.16
2448 2459 4.412207 GACGCTGAATAACCAAACCATTC 58.588 43.478 0.00 0.00 0.00 2.67
2457 2468 7.890127 TGAATAACCAAACCATTCTTCTCTGAT 59.110 33.333 0.00 0.00 31.37 2.90
2523 2702 1.200020 CTGTAGGGGCGCTTCTTTTTG 59.800 52.381 10.13 0.00 0.00 2.44
2538 2717 5.280654 TCTTTTTGGGACTACACGTTAGT 57.719 39.130 9.28 9.28 0.00 2.24
2539 2718 6.403866 TCTTTTTGGGACTACACGTTAGTA 57.596 37.500 9.44 0.00 0.00 1.82
2540 2719 6.449698 TCTTTTTGGGACTACACGTTAGTAG 58.550 40.000 10.61 10.61 45.44 2.57
2621 2800 9.760077 GAAGATGAATTTTTGCAGGATGATAAT 57.240 29.630 0.00 0.00 39.69 1.28
2666 2845 9.229784 CTGAAAATTTGCATACAAGCAGTATAG 57.770 33.333 0.00 0.13 46.54 1.31
2671 2850 7.921786 TTTGCATACAAGCAGTATAGTTTCT 57.078 32.000 2.05 0.00 46.54 2.52
2674 2853 7.974675 TGCATACAAGCAGTATAGTTTCTTTC 58.025 34.615 2.05 0.00 41.47 2.62
2743 2923 1.271871 ACGGCCATGAATTCCTTGTGA 60.272 47.619 2.24 0.00 0.00 3.58
2757 2937 2.413112 CCTTGTGATACAGCACGACAAG 59.587 50.000 0.00 0.00 42.02 3.16
2759 2939 3.926821 TGTGATACAGCACGACAAGTA 57.073 42.857 0.00 0.00 41.63 2.24
2822 3003 1.938577 CAACAGGAGGAGATTGCGATG 59.061 52.381 0.00 0.00 0.00 3.84
2940 3130 2.928361 CACAAAGACGCGCGAACT 59.072 55.556 39.36 29.50 0.00 3.01
2977 3167 1.525995 CATATGCCACCACCCGGAC 60.526 63.158 0.73 0.00 35.59 4.79
2978 3168 1.998438 ATATGCCACCACCCGGACA 60.998 57.895 0.73 0.00 35.59 4.02
2982 3172 3.931247 CCACCACCCGGACACGAA 61.931 66.667 0.73 0.00 44.60 3.85
3009 3199 4.742201 CGGCCACCAGAGGACACG 62.742 72.222 2.24 0.00 35.99 4.49
3050 3247 3.675485 CGTTCGCGTCGATCATGT 58.325 55.556 17.82 0.00 35.23 3.21
3057 3254 1.188791 CGCGTCGATCATGTCATGAAG 59.811 52.381 19.17 15.49 43.50 3.02
3109 3307 0.298411 CGGACGACGTTTTTGTTCGT 59.702 50.000 0.13 0.00 43.00 3.85
3247 3445 2.282462 CCCTGGTTTTGGCGCTCT 60.282 61.111 7.64 0.00 0.00 4.09
3424 3628 2.288457 CCTCTACGCCATCATGTCGATT 60.288 50.000 0.00 0.00 29.21 3.34
3597 3801 2.441532 CCTAAGGCCTCGTCGGGA 60.442 66.667 5.23 0.00 0.00 5.14
3598 3802 1.833049 CCTAAGGCCTCGTCGGGAT 60.833 63.158 5.23 0.00 0.00 3.85
3599 3803 0.538977 CCTAAGGCCTCGTCGGGATA 60.539 60.000 5.23 0.00 0.00 2.59
3600 3804 1.546961 CTAAGGCCTCGTCGGGATAT 58.453 55.000 5.23 0.00 0.00 1.63
3601 3805 1.202582 CTAAGGCCTCGTCGGGATATG 59.797 57.143 5.23 0.00 0.00 1.78
3602 3806 0.469331 AAGGCCTCGTCGGGATATGA 60.469 55.000 5.23 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.343814 AGCTAGAGGGTAAATCAGAGAAGC 59.656 45.833 0.00 0.00 0.00 3.86
13 14 6.127196 ACAAGCTAGAGGGTAAATCAGAGAAG 60.127 42.308 0.00 0.00 0.00 2.85
26 27 4.125703 CTCAAATGCTACAAGCTAGAGGG 58.874 47.826 0.00 0.00 42.97 4.30
60 61 3.381949 AGATACATAGCCGTCGAAAAGC 58.618 45.455 0.00 0.00 0.00 3.51
65 66 5.414765 ACATGATAAGATACATAGCCGTCGA 59.585 40.000 0.00 0.00 0.00 4.20
67 68 6.868864 ACAACATGATAAGATACATAGCCGTC 59.131 38.462 0.00 0.00 0.00 4.79
68 69 6.759272 ACAACATGATAAGATACATAGCCGT 58.241 36.000 0.00 0.00 0.00 5.68
116 117 4.894784 TCAACCGGCCAAGAATATAGATC 58.105 43.478 0.00 0.00 0.00 2.75
121 122 2.586425 CCATCAACCGGCCAAGAATAT 58.414 47.619 0.00 0.00 0.00 1.28
131 132 3.866883 ATTAACAAAGCCATCAACCGG 57.133 42.857 0.00 0.00 0.00 5.28
153 154 4.271291 GGGCTCGAGACTAGCTTAATTTTG 59.729 45.833 19.83 0.00 39.97 2.44
157 158 1.964933 GGGGCTCGAGACTAGCTTAAT 59.035 52.381 19.83 0.00 39.97 1.40
159 160 0.257905 TGGGGCTCGAGACTAGCTTA 59.742 55.000 19.83 0.00 39.97 3.09
160 161 0.397816 ATGGGGCTCGAGACTAGCTT 60.398 55.000 19.83 0.00 39.97 3.74
161 162 0.825840 GATGGGGCTCGAGACTAGCT 60.826 60.000 19.83 0.06 39.97 3.32
167 168 0.537188 GTTTGAGATGGGGCTCGAGA 59.463 55.000 18.75 0.00 37.73 4.04
177 178 1.329906 GCATCAGCCGAGTTTGAGATG 59.670 52.381 0.00 0.00 36.76 2.90
191 192 8.738106 AGAAGATTTTTAGAGAAAAGGCATCAG 58.262 33.333 0.00 0.00 35.96 2.90
194 195 8.876303 AGAGAAGATTTTTAGAGAAAAGGCAT 57.124 30.769 0.00 0.00 35.96 4.40
233 234 2.035442 GTGAGGCTCGAACCCTTGC 61.035 63.158 10.42 0.00 31.41 4.01
265 266 0.560688 AGGAGGAACCAGGGCAAAAA 59.439 50.000 0.00 0.00 42.04 1.94
298 301 1.815003 CTTGGGACAGCAGGCTAAAAG 59.185 52.381 0.00 0.00 42.39 2.27
322 325 9.326413 CGTAAGACCTGGTCTCATATAATTTTT 57.674 33.333 28.46 11.55 42.59 1.94
323 326 7.931948 CCGTAAGACCTGGTCTCATATAATTTT 59.068 37.037 28.46 12.05 42.59 1.82
324 327 7.070821 ACCGTAAGACCTGGTCTCATATAATTT 59.929 37.037 28.46 12.75 42.59 1.82
325 328 6.553852 ACCGTAAGACCTGGTCTCATATAATT 59.446 38.462 28.46 13.45 42.59 1.40
326 329 6.075984 ACCGTAAGACCTGGTCTCATATAAT 58.924 40.000 28.46 14.16 42.59 1.28
327 330 5.452255 ACCGTAAGACCTGGTCTCATATAA 58.548 41.667 28.46 8.51 42.59 0.98
328 331 5.057843 ACCGTAAGACCTGGTCTCATATA 57.942 43.478 28.46 14.91 42.59 0.86
329 332 3.912248 ACCGTAAGACCTGGTCTCATAT 58.088 45.455 28.46 15.93 42.59 1.78
330 333 3.377253 ACCGTAAGACCTGGTCTCATA 57.623 47.619 28.46 15.96 42.59 2.15
331 334 2.233305 ACCGTAAGACCTGGTCTCAT 57.767 50.000 28.46 17.00 42.59 2.90
332 335 2.005370 AACCGTAAGACCTGGTCTCA 57.995 50.000 28.46 13.27 42.59 3.27
333 336 3.087781 ACTAACCGTAAGACCTGGTCTC 58.912 50.000 28.46 16.42 42.59 3.36
334 337 3.166560 ACTAACCGTAAGACCTGGTCT 57.833 47.619 23.49 23.49 45.64 3.85
335 338 3.379688 CCTACTAACCGTAAGACCTGGTC 59.620 52.174 19.20 19.20 43.02 4.02
336 339 3.245407 ACCTACTAACCGTAAGACCTGGT 60.245 47.826 0.00 0.00 43.02 4.00
337 340 3.129988 CACCTACTAACCGTAAGACCTGG 59.870 52.174 0.00 0.00 43.02 4.45
338 341 4.012374 TCACCTACTAACCGTAAGACCTG 58.988 47.826 0.00 0.00 43.02 4.00
339 342 4.018960 TCTCACCTACTAACCGTAAGACCT 60.019 45.833 0.00 0.00 43.02 3.85
340 343 4.095632 GTCTCACCTACTAACCGTAAGACC 59.904 50.000 0.00 0.00 43.02 3.85
341 344 4.095632 GGTCTCACCTACTAACCGTAAGAC 59.904 50.000 0.00 0.00 35.25 3.01
342 345 4.265073 GGTCTCACCTACTAACCGTAAGA 58.735 47.826 0.00 0.00 35.25 2.10
343 346 3.379688 GGGTCTCACCTACTAACCGTAAG 59.620 52.174 0.00 0.00 38.64 2.34
344 347 3.356290 GGGTCTCACCTACTAACCGTAA 58.644 50.000 0.00 0.00 38.64 3.18
345 348 2.680805 CGGGTCTCACCTACTAACCGTA 60.681 54.545 0.00 0.00 38.64 4.02
346 349 1.844687 GGGTCTCACCTACTAACCGT 58.155 55.000 0.00 0.00 38.64 4.83
347 350 0.737219 CGGGTCTCACCTACTAACCG 59.263 60.000 0.00 0.00 38.64 4.44
348 351 1.747924 GACGGGTCTCACCTACTAACC 59.252 57.143 0.00 0.00 38.64 2.85
349 352 1.747924 GGACGGGTCTCACCTACTAAC 59.252 57.143 0.00 0.00 38.64 2.34
350 353 1.637553 AGGACGGGTCTCACCTACTAA 59.362 52.381 0.00 0.00 38.64 2.24
351 354 1.064906 CAGGACGGGTCTCACCTACTA 60.065 57.143 0.00 0.00 38.64 1.82
352 355 0.323542 CAGGACGGGTCTCACCTACT 60.324 60.000 0.00 0.00 38.64 2.57
353 356 0.323178 TCAGGACGGGTCTCACCTAC 60.323 60.000 0.00 0.00 38.64 3.18
354 357 0.629596 ATCAGGACGGGTCTCACCTA 59.370 55.000 0.00 0.00 38.64 3.08
355 358 0.972983 CATCAGGACGGGTCTCACCT 60.973 60.000 0.00 0.00 38.64 4.00
356 359 1.517832 CATCAGGACGGGTCTCACC 59.482 63.158 0.00 0.00 37.60 4.02
357 360 0.970937 TCCATCAGGACGGGTCTCAC 60.971 60.000 0.00 0.00 39.61 3.51
358 361 1.386550 TCCATCAGGACGGGTCTCA 59.613 57.895 0.00 0.00 39.61 3.27
359 362 4.356979 TCCATCAGGACGGGTCTC 57.643 61.111 0.00 0.00 39.61 3.36
368 371 1.070601 TGCCACGTATCATCCATCAGG 59.929 52.381 0.00 0.00 0.00 3.86
369 372 2.531522 TGCCACGTATCATCCATCAG 57.468 50.000 0.00 0.00 0.00 2.90
370 373 3.181456 TGAATGCCACGTATCATCCATCA 60.181 43.478 0.00 0.00 0.00 3.07
371 374 3.187227 GTGAATGCCACGTATCATCCATC 59.813 47.826 0.00 0.00 35.86 3.51
372 375 3.141398 GTGAATGCCACGTATCATCCAT 58.859 45.455 0.00 0.00 35.86 3.41
373 376 2.560504 GTGAATGCCACGTATCATCCA 58.439 47.619 0.00 0.00 35.86 3.41
374 377 9.332719 ATGATTTGTGAATGCCACGTATCATCC 62.333 40.741 13.89 0.00 45.47 3.51
375 378 6.513884 ATGATTTGTGAATGCCACGTATCATC 60.514 38.462 13.89 0.00 45.47 2.92
383 386 5.170021 TGCTTTATGATTTGTGAATGCCAC 58.830 37.500 0.00 0.00 45.88 5.01
384 387 5.402997 TGCTTTATGATTTGTGAATGCCA 57.597 34.783 0.00 0.00 0.00 4.92
385 388 5.464389 GGATGCTTTATGATTTGTGAATGCC 59.536 40.000 0.00 0.00 0.00 4.40
386 389 5.464389 GGGATGCTTTATGATTTGTGAATGC 59.536 40.000 0.00 0.00 0.00 3.56
387 390 5.987347 GGGGATGCTTTATGATTTGTGAATG 59.013 40.000 0.00 0.00 0.00 2.67
388 391 5.070847 GGGGGATGCTTTATGATTTGTGAAT 59.929 40.000 0.00 0.00 0.00 2.57
389 392 4.405358 GGGGGATGCTTTATGATTTGTGAA 59.595 41.667 0.00 0.00 0.00 3.18
390 393 3.960102 GGGGGATGCTTTATGATTTGTGA 59.040 43.478 0.00 0.00 0.00 3.58
391 394 3.705579 TGGGGGATGCTTTATGATTTGTG 59.294 43.478 0.00 0.00 0.00 3.33
392 395 3.706086 GTGGGGGATGCTTTATGATTTGT 59.294 43.478 0.00 0.00 0.00 2.83
393 396 3.070015 GGTGGGGGATGCTTTATGATTTG 59.930 47.826 0.00 0.00 0.00 2.32
394 397 3.308401 GGTGGGGGATGCTTTATGATTT 58.692 45.455 0.00 0.00 0.00 2.17
395 398 2.426268 GGGTGGGGGATGCTTTATGATT 60.426 50.000 0.00 0.00 0.00 2.57
396 399 1.147817 GGGTGGGGGATGCTTTATGAT 59.852 52.381 0.00 0.00 0.00 2.45
397 400 0.555769 GGGTGGGGGATGCTTTATGA 59.444 55.000 0.00 0.00 0.00 2.15
398 401 0.469892 GGGGTGGGGGATGCTTTATG 60.470 60.000 0.00 0.00 0.00 1.90
399 402 1.938327 GGGGTGGGGGATGCTTTAT 59.062 57.895 0.00 0.00 0.00 1.40
400 403 2.685534 CGGGGTGGGGGATGCTTTA 61.686 63.158 0.00 0.00 0.00 1.85
401 404 4.060667 CGGGGTGGGGGATGCTTT 62.061 66.667 0.00 0.00 0.00 3.51
403 406 4.843331 ATCGGGGTGGGGGATGCT 62.843 66.667 0.00 0.00 0.00 3.79
404 407 2.002018 TAAATCGGGGTGGGGGATGC 62.002 60.000 0.00 0.00 0.00 3.91
405 408 0.553819 TTAAATCGGGGTGGGGGATG 59.446 55.000 0.00 0.00 0.00 3.51
406 409 1.310877 TTTAAATCGGGGTGGGGGAT 58.689 50.000 0.00 0.00 0.00 3.85
407 410 1.082326 TTTTAAATCGGGGTGGGGGA 58.918 50.000 0.00 0.00 0.00 4.81
408 411 2.036387 GATTTTAAATCGGGGTGGGGG 58.964 52.381 1.70 0.00 0.00 5.40
409 412 2.693074 CTGATTTTAAATCGGGGTGGGG 59.307 50.000 16.45 0.00 0.00 4.96
410 413 2.693074 CCTGATTTTAAATCGGGGTGGG 59.307 50.000 28.87 13.32 40.15 4.61
431 434 3.576550 GTGTCATCTAATCTCTCTCCCCC 59.423 52.174 0.00 0.00 0.00 5.40
432 435 3.254657 CGTGTCATCTAATCTCTCTCCCC 59.745 52.174 0.00 0.00 0.00 4.81
433 436 3.886505 ACGTGTCATCTAATCTCTCTCCC 59.113 47.826 0.00 0.00 0.00 4.30
434 437 4.261405 CCACGTGTCATCTAATCTCTCTCC 60.261 50.000 15.65 0.00 0.00 3.71
435 438 4.791411 GCCACGTGTCATCTAATCTCTCTC 60.791 50.000 15.65 0.00 0.00 3.20
436 439 3.067461 GCCACGTGTCATCTAATCTCTCT 59.933 47.826 15.65 0.00 0.00 3.10
437 440 3.181486 TGCCACGTGTCATCTAATCTCTC 60.181 47.826 15.65 0.00 0.00 3.20
438 441 2.760650 TGCCACGTGTCATCTAATCTCT 59.239 45.455 15.65 0.00 0.00 3.10
439 442 3.165058 TGCCACGTGTCATCTAATCTC 57.835 47.619 15.65 0.00 0.00 2.75
440 443 3.827008 ATGCCACGTGTCATCTAATCT 57.173 42.857 15.65 0.00 0.00 2.40
441 444 3.871006 TGAATGCCACGTGTCATCTAATC 59.129 43.478 13.12 7.25 0.00 1.75
442 445 3.623060 GTGAATGCCACGTGTCATCTAAT 59.377 43.478 13.12 0.00 35.86 1.73
443 446 3.000041 GTGAATGCCACGTGTCATCTAA 59.000 45.455 13.12 0.00 35.86 2.10
444 447 2.616960 GTGAATGCCACGTGTCATCTA 58.383 47.619 13.12 2.12 35.86 1.98
445 448 1.442769 GTGAATGCCACGTGTCATCT 58.557 50.000 13.12 3.38 35.86 2.90
446 449 3.975992 GTGAATGCCACGTGTCATC 57.024 52.632 13.12 7.23 35.86 2.92
454 457 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
455 458 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
456 459 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
457 460 4.927425 AGATGCTTTGTGATTTGTGAATGC 59.073 37.500 0.00 0.00 0.00 3.56
458 461 8.697846 ATTAGATGCTTTGTGATTTGTGAATG 57.302 30.769 0.00 0.00 0.00 2.67
459 462 8.746530 AGATTAGATGCTTTGTGATTTGTGAAT 58.253 29.630 0.00 0.00 0.00 2.57
460 463 8.114331 AGATTAGATGCTTTGTGATTTGTGAA 57.886 30.769 0.00 0.00 0.00 3.18
461 464 7.609146 AGAGATTAGATGCTTTGTGATTTGTGA 59.391 33.333 0.00 0.00 0.00 3.58
462 465 7.759465 AGAGATTAGATGCTTTGTGATTTGTG 58.241 34.615 0.00 0.00 0.00 3.33
463 466 7.066766 GGAGAGATTAGATGCTTTGTGATTTGT 59.933 37.037 0.00 0.00 0.00 2.83
464 467 7.416022 GGAGAGATTAGATGCTTTGTGATTTG 58.584 38.462 0.00 0.00 0.00 2.32
465 468 6.545298 GGGAGAGATTAGATGCTTTGTGATTT 59.455 38.462 0.00 0.00 0.00 2.17
466 469 6.060788 GGGAGAGATTAGATGCTTTGTGATT 58.939 40.000 0.00 0.00 0.00 2.57
467 470 5.369110 AGGGAGAGATTAGATGCTTTGTGAT 59.631 40.000 0.00 0.00 0.00 3.06
468 471 4.718774 AGGGAGAGATTAGATGCTTTGTGA 59.281 41.667 0.00 0.00 0.00 3.58
469 472 5.033589 AGGGAGAGATTAGATGCTTTGTG 57.966 43.478 0.00 0.00 0.00 3.33
470 473 4.102367 GGAGGGAGAGATTAGATGCTTTGT 59.898 45.833 0.00 0.00 0.00 2.83
471 474 4.504689 GGGAGGGAGAGATTAGATGCTTTG 60.505 50.000 0.00 0.00 0.00 2.77
472 475 3.650461 GGGAGGGAGAGATTAGATGCTTT 59.350 47.826 0.00 0.00 0.00 3.51
473 476 3.247162 GGGAGGGAGAGATTAGATGCTT 58.753 50.000 0.00 0.00 0.00 3.91
474 477 2.494439 GGGGAGGGAGAGATTAGATGCT 60.494 54.545 0.00 0.00 0.00 3.79
475 478 1.905894 GGGGAGGGAGAGATTAGATGC 59.094 57.143 0.00 0.00 0.00 3.91
476 479 3.172339 CAGGGGAGGGAGAGATTAGATG 58.828 54.545 0.00 0.00 0.00 2.90
477 480 3.075181 TCAGGGGAGGGAGAGATTAGAT 58.925 50.000 0.00 0.00 0.00 1.98
478 481 2.514696 TCAGGGGAGGGAGAGATTAGA 58.485 52.381 0.00 0.00 0.00 2.10
479 482 3.558608 ATCAGGGGAGGGAGAGATTAG 57.441 52.381 0.00 0.00 0.00 1.73
480 483 4.302004 AAATCAGGGGAGGGAGAGATTA 57.698 45.455 0.00 0.00 0.00 1.75
481 484 2.906169 AATCAGGGGAGGGAGAGATT 57.094 50.000 0.00 0.00 0.00 2.40
482 485 2.906169 AAATCAGGGGAGGGAGAGAT 57.094 50.000 0.00 0.00 0.00 2.75
483 486 2.668850 AAAATCAGGGGAGGGAGAGA 57.331 50.000 0.00 0.00 0.00 3.10
484 487 3.783082 ACTTAAAATCAGGGGAGGGAGAG 59.217 47.826 0.00 0.00 0.00 3.20
485 488 3.780850 GACTTAAAATCAGGGGAGGGAGA 59.219 47.826 0.00 0.00 0.00 3.71
486 489 3.432326 CGACTTAAAATCAGGGGAGGGAG 60.432 52.174 0.00 0.00 0.00 4.30
487 490 2.504175 CGACTTAAAATCAGGGGAGGGA 59.496 50.000 0.00 0.00 0.00 4.20
488 491 2.421529 CCGACTTAAAATCAGGGGAGGG 60.422 54.545 0.00 0.00 0.00 4.30
489 492 2.421529 CCCGACTTAAAATCAGGGGAGG 60.422 54.545 0.00 0.00 35.16 4.30
490 493 2.919228 CCCGACTTAAAATCAGGGGAG 58.081 52.381 0.00 0.00 35.16 4.30
493 496 2.365582 CACCCCGACTTAAAATCAGGG 58.634 52.381 6.25 6.25 39.43 4.45
494 497 2.365582 CCACCCCGACTTAAAATCAGG 58.634 52.381 0.00 0.00 0.00 3.86
495 498 2.365582 CCCACCCCGACTTAAAATCAG 58.634 52.381 0.00 0.00 0.00 2.90
496 499 1.004979 CCCCACCCCGACTTAAAATCA 59.995 52.381 0.00 0.00 0.00 2.57
497 500 1.683938 CCCCCACCCCGACTTAAAATC 60.684 57.143 0.00 0.00 0.00 2.17
498 501 0.333652 CCCCCACCCCGACTTAAAAT 59.666 55.000 0.00 0.00 0.00 1.82
499 502 0.771339 TCCCCCACCCCGACTTAAAA 60.771 55.000 0.00 0.00 0.00 1.52
500 503 0.550638 ATCCCCCACCCCGACTTAAA 60.551 55.000 0.00 0.00 0.00 1.52
501 504 1.083329 ATCCCCCACCCCGACTTAA 59.917 57.895 0.00 0.00 0.00 1.85
502 505 1.691337 CATCCCCCACCCCGACTTA 60.691 63.158 0.00 0.00 0.00 2.24
503 506 3.015145 CATCCCCCACCCCGACTT 61.015 66.667 0.00 0.00 0.00 3.01
507 510 4.060667 AAAGCATCCCCCACCCCG 62.061 66.667 0.00 0.00 0.00 5.73
508 511 2.364186 CAAAGCATCCCCCACCCC 60.364 66.667 0.00 0.00 0.00 4.95
509 512 1.984026 CACAAAGCATCCCCCACCC 60.984 63.158 0.00 0.00 0.00 4.61
510 513 0.324645 ATCACAAAGCATCCCCCACC 60.325 55.000 0.00 0.00 0.00 4.61
511 514 1.560505 AATCACAAAGCATCCCCCAC 58.439 50.000 0.00 0.00 0.00 4.61
512 515 1.901159 CAAATCACAAAGCATCCCCCA 59.099 47.619 0.00 0.00 0.00 4.96
513 516 1.901833 ACAAATCACAAAGCATCCCCC 59.098 47.619 0.00 0.00 0.00 5.40
514 517 2.562298 TCACAAATCACAAAGCATCCCC 59.438 45.455 0.00 0.00 0.00 4.81
515 518 3.940209 TCACAAATCACAAAGCATCCC 57.060 42.857 0.00 0.00 0.00 3.85
516 519 4.092383 GCATTCACAAATCACAAAGCATCC 59.908 41.667 0.00 0.00 0.00 3.51
517 520 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
518 521 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
519 522 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
520 523 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
521 524 4.977741 GTGGCATTCACAAATCACAAAG 57.022 40.909 0.00 0.00 45.39 2.77
532 535 2.093890 TGGATGACATGTGGCATTCAC 58.906 47.619 1.15 0.00 43.95 3.18
533 536 2.510928 TGGATGACATGTGGCATTCA 57.489 45.000 1.15 5.70 46.54 2.57
534 537 2.953648 TGATGGATGACATGTGGCATTC 59.046 45.455 1.15 1.06 45.42 2.67
535 538 2.956333 CTGATGGATGACATGTGGCATT 59.044 45.455 1.15 0.00 45.42 3.56
537 540 1.560611 TCTGATGGATGACATGTGGCA 59.439 47.619 1.15 0.00 40.72 4.92
538 541 2.336945 TCTGATGGATGACATGTGGC 57.663 50.000 1.15 0.00 40.72 5.01
539 542 4.830826 CATTCTGATGGATGACATGTGG 57.169 45.455 1.15 0.00 40.72 4.17
550 553 4.982708 CTCATGTGAGACCCATTCTGATGG 60.983 50.000 3.96 0.00 46.64 3.51
551 554 4.127907 CTCATGTGAGACCCATTCTGATG 58.872 47.826 3.96 0.00 44.74 3.07
552 555 4.035814 TCTCATGTGAGACCCATTCTGAT 58.964 43.478 8.58 0.00 45.48 2.90
553 556 3.444029 TCTCATGTGAGACCCATTCTGA 58.556 45.455 8.58 0.00 45.48 3.27
554 557 3.900966 TCTCATGTGAGACCCATTCTG 57.099 47.619 8.58 0.00 45.48 3.02
587 590 3.009363 CCATTGGGCCAGGAAAAGAATTT 59.991 43.478 6.23 0.00 42.41 1.82
588 591 2.573009 CCATTGGGCCAGGAAAAGAATT 59.427 45.455 6.23 0.00 0.00 2.17
589 592 2.190538 CCATTGGGCCAGGAAAAGAAT 58.809 47.619 6.23 0.00 0.00 2.40
590 593 1.643310 CCATTGGGCCAGGAAAAGAA 58.357 50.000 6.23 0.00 0.00 2.52
591 594 3.379617 CCATTGGGCCAGGAAAAGA 57.620 52.632 6.23 0.00 0.00 2.52
638 641 0.603975 AGGGCAGTTTCGAACTCAGC 60.604 55.000 0.00 2.86 40.46 4.26
653 656 1.188863 TCGTTGTTAGGTAGGAGGGC 58.811 55.000 0.00 0.00 0.00 5.19
698 701 6.909909 AGGCAAGAAAAATAAACGAGGTTAG 58.090 36.000 0.00 0.00 0.00 2.34
733 736 3.214328 CCCGAGTATTCAATCCCCTTTG 58.786 50.000 0.00 0.00 0.00 2.77
762 765 2.068519 GCAAAATGCTTAGTGGCCAAC 58.931 47.619 7.24 1.26 40.96 3.77
803 806 3.662247 ACTTGTAACTCCTCTCCAACG 57.338 47.619 0.00 0.00 0.00 4.10
897 901 7.986889 TCGATATTCCATGAATTGAAGACTTCA 59.013 33.333 13.99 13.99 38.04 3.02
970 977 1.546476 CTTCAGAACCGCCTAGTGTCT 59.454 52.381 0.00 0.00 0.00 3.41
975 982 1.819288 TCAGACTTCAGAACCGCCTAG 59.181 52.381 0.00 0.00 0.00 3.02
978 985 1.149148 GTTCAGACTTCAGAACCGCC 58.851 55.000 3.71 0.00 36.68 6.13
1044 1051 4.436998 ACCGCGAGCAGGTACAGC 62.437 66.667 8.23 0.00 40.80 4.40
1109 1116 2.231964 TCTGTAACGTCATAAAGGCCGT 59.768 45.455 0.00 0.00 34.56 5.68
1110 1117 2.858344 CTCTGTAACGTCATAAAGGCCG 59.142 50.000 0.00 0.00 0.00 6.13
1111 1118 3.858247 ACTCTGTAACGTCATAAAGGCC 58.142 45.455 0.00 0.00 0.00 5.19
1152 1159 4.671766 GCACTCACGTCTTTGTTGTCTTTT 60.672 41.667 0.00 0.00 0.00 2.27
1153 1160 3.181510 GCACTCACGTCTTTGTTGTCTTT 60.182 43.478 0.00 0.00 0.00 2.52
1187 1194 1.447489 CAGGAAGCAGCGAGTCCAG 60.447 63.158 13.47 3.86 33.57 3.86
1551 1562 0.533085 TGATCACCGTCGTTTTGGCA 60.533 50.000 0.00 0.00 0.00 4.92
1614 1625 4.235360 CTCACCGTCTCGTTCAGTAAAAT 58.765 43.478 0.00 0.00 0.00 1.82
1656 1667 1.228988 TCCAGCTCCAGAGTCTGCA 60.229 57.895 15.10 0.00 33.93 4.41
2135 2146 2.506438 GCAGTACCGCTGGTCGAC 60.506 66.667 7.13 7.13 45.14 4.20
2185 2196 2.887568 CTGATCTGCACCCGCGAC 60.888 66.667 8.23 0.00 42.97 5.19
2206 2217 1.203300 TGGATCCTCCTGAAGGTCACA 60.203 52.381 14.23 0.00 46.32 3.58
2415 2426 2.835701 TTCAGCGTCCGATGGCAGTC 62.836 60.000 5.02 0.00 31.68 3.51
2416 2427 2.244117 ATTCAGCGTCCGATGGCAGT 62.244 55.000 5.02 0.00 31.68 4.40
2425 2436 2.156098 TGGTTTGGTTATTCAGCGTCC 58.844 47.619 0.00 0.00 0.00 4.79
2442 2453 4.808414 TTGTCGATCAGAGAAGAATGGT 57.192 40.909 0.00 0.00 0.00 3.55
2457 2468 2.543031 CCGTGTGAACTCTTCTTGTCGA 60.543 50.000 0.00 0.00 0.00 4.20
2517 2695 6.701432 CTACTAACGTGTAGTCCCAAAAAG 57.299 41.667 11.88 2.32 36.19 2.27
2621 2800 7.915293 TTTCAGCTCGAAATTAACCTGATTA 57.085 32.000 7.09 0.00 38.72 1.75
2622 2801 6.817765 TTTCAGCTCGAAATTAACCTGATT 57.182 33.333 7.09 0.00 38.72 2.57
2623 2802 6.817765 TTTTCAGCTCGAAATTAACCTGAT 57.182 33.333 10.72 0.00 43.12 2.90
2666 2845 8.702163 TCTGAATTCCAACAAAAGAAAGAAAC 57.298 30.769 2.27 0.00 0.00 2.78
2671 2850 9.664332 TTGATTTCTGAATTCCAACAAAAGAAA 57.336 25.926 13.89 13.89 36.81 2.52
2674 2853 7.225145 TGCTTGATTTCTGAATTCCAACAAAAG 59.775 33.333 2.27 6.63 0.00 2.27
2678 2857 5.302568 ACTGCTTGATTTCTGAATTCCAACA 59.697 36.000 2.27 4.74 0.00 3.33
2743 2923 3.926616 AGCTTTACTTGTCGTGCTGTAT 58.073 40.909 0.00 0.00 0.00 2.29
2798 2979 1.680249 GCAATCTCCTCCTGTTGGTCC 60.680 57.143 0.00 0.00 34.23 4.46
2822 3003 3.512516 GCATGCAGCCGGTTCTCC 61.513 66.667 14.21 0.00 37.23 3.71
2977 3167 1.683790 GGCCGTTGAGTCGATTCGTG 61.684 60.000 5.89 0.00 0.00 4.35
2978 3168 1.445582 GGCCGTTGAGTCGATTCGT 60.446 57.895 5.89 0.00 0.00 3.85
2982 3172 2.264794 GGTGGCCGTTGAGTCGAT 59.735 61.111 0.00 0.00 0.00 3.59
3009 3199 0.999406 TAGCGATTGAAAGTGAGCGC 59.001 50.000 0.00 0.00 44.22 5.92
3045 3242 4.763073 CTCTTACAGCCTTCATGACATGA 58.237 43.478 14.24 14.24 37.55 3.07
3118 3316 1.213537 GGACGACCGATCCAAACGA 59.786 57.895 0.00 0.00 36.15 3.85
3344 3548 1.089481 CCTTCTTTATGGCGAGCGCA 61.089 55.000 17.16 3.47 44.11 6.09
3353 3557 1.587547 GAGGGAGCGCCTTCTTTATG 58.412 55.000 11.50 0.00 37.31 1.90
3509 3713 3.371063 GGTGCCGAGGACGAGACA 61.371 66.667 0.00 0.00 42.66 3.41
3597 3801 8.912988 ACACGTTGGGAAAATTCATATTCATAT 58.087 29.630 0.00 0.00 0.00 1.78
3598 3802 8.287439 ACACGTTGGGAAAATTCATATTCATA 57.713 30.769 0.00 0.00 0.00 2.15
3599 3803 7.169158 ACACGTTGGGAAAATTCATATTCAT 57.831 32.000 0.00 0.00 0.00 2.57
3600 3804 6.582677 ACACGTTGGGAAAATTCATATTCA 57.417 33.333 0.00 0.00 0.00 2.57
3601 3805 5.737290 CGACACGTTGGGAAAATTCATATTC 59.263 40.000 0.00 0.00 0.00 1.75
3602 3806 5.413213 TCGACACGTTGGGAAAATTCATATT 59.587 36.000 0.00 0.00 0.00 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.