Multiple sequence alignment - TraesCS7A01G269600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G269600 chr7A 100.000 3090 0 0 1 3090 275547702 275544613 0 5707
1 TraesCS7A01G269600 chr7D 91.568 3202 104 58 1 3090 255785798 255782651 0 4265
2 TraesCS7A01G269600 chr7B 89.895 3226 115 85 1 3090 234015119 234011969 0 3956


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G269600 chr7A 275544613 275547702 3089 True 5707 5707 100.000 1 3090 1 chr7A.!!$R1 3089
1 TraesCS7A01G269600 chr7D 255782651 255785798 3147 True 4265 4265 91.568 1 3090 1 chr7D.!!$R1 3089
2 TraesCS7A01G269600 chr7B 234011969 234015119 3150 True 3956 3956 89.895 1 3090 1 chr7B.!!$R1 3089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 945 0.316841 TGGGCTCGCAATTTTGGTTC 59.683 50.0 0.0 0.0 0.0 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2321 2467 1.421268 AGATCATGGGTGTGTGTGTGT 59.579 47.619 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.450312 CCGACACTTGGGCTGGATC 60.450 63.158 0.00 0.00 0.00 3.36
180 211 1.140852 CGATCCTTGGTGCCCTATGAA 59.859 52.381 0.00 0.00 0.00 2.57
221 254 4.620086 TGAAATCTGGTAGGTAGGAGGA 57.380 45.455 0.00 0.00 0.00 3.71
234 267 3.822167 GGTAGGAGGAGAACGAATAGGAG 59.178 52.174 0.00 0.00 0.00 3.69
265 298 1.819229 GAGCTCCATCGCCTCAAGA 59.181 57.895 0.87 0.00 0.00 3.02
356 390 1.894466 AGCAGATGAGGAGATCCATCG 59.106 52.381 0.92 0.00 42.81 3.84
438 472 3.717294 CCCCTCACCAACCCGGAG 61.717 72.222 0.73 0.00 38.63 4.63
564 626 1.852895 GCCGTACGATCAATGACACTC 59.147 52.381 18.76 0.00 0.00 3.51
598 665 5.648960 TGAAAACCTGGGTATCCGTAATTTC 59.351 40.000 0.00 6.33 35.24 2.17
602 669 3.389983 CCTGGGTATCCGTAATTTCCAGA 59.610 47.826 7.91 0.00 38.00 3.86
664 745 2.837291 TTGCCCCACACCAACAGC 60.837 61.111 0.00 0.00 0.00 4.40
806 887 0.751643 ACAACCTGACACCCACTTGC 60.752 55.000 0.00 0.00 0.00 4.01
820 901 2.431454 CACTTGCTTCTTCTTCCTCCC 58.569 52.381 0.00 0.00 0.00 4.30
826 907 0.800239 TTCTTCTTCCTCCCCCTCCT 59.200 55.000 0.00 0.00 0.00 3.69
829 910 2.040359 CTTCCTCCCCCTCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
838 922 1.742768 CCCTCCTCCCGATTTCTCG 59.257 63.158 0.00 0.00 44.62 4.04
861 945 0.316841 TGGGCTCGCAATTTTGGTTC 59.683 50.000 0.00 0.00 0.00 3.62
864 948 1.000843 GGCTCGCAATTTTGGTTCCTT 59.999 47.619 0.00 0.00 0.00 3.36
866 950 2.545742 GCTCGCAATTTTGGTTCCTTGT 60.546 45.455 0.00 0.00 0.00 3.16
867 951 3.305064 GCTCGCAATTTTGGTTCCTTGTA 60.305 43.478 0.00 0.00 0.00 2.41
868 952 4.618227 GCTCGCAATTTTGGTTCCTTGTAT 60.618 41.667 0.00 0.00 0.00 2.29
886 970 3.455910 TGTATTAGCCTCTTCCTGCACAT 59.544 43.478 0.00 0.00 0.00 3.21
900 1014 2.292845 CTGCACATAGAGAGAGCATCGA 59.707 50.000 0.00 0.00 42.67 3.59
907 1021 3.921119 AGAGAGAGCATCGATAGCAAG 57.079 47.619 17.94 0.00 42.67 4.01
908 1022 2.030007 AGAGAGAGCATCGATAGCAAGC 60.030 50.000 17.94 9.07 42.67 4.01
912 1026 2.299582 AGAGCATCGATAGCAAGCTGAT 59.700 45.455 11.49 0.00 42.67 2.90
935 1049 8.561769 TGATTAGGCTAGGTAGATAGATTAGCT 58.438 37.037 0.00 0.00 37.48 3.32
942 1056 6.652205 AGGTAGATAGATTAGCTAGCCTCT 57.348 41.667 12.13 13.53 43.89 3.69
943 1057 6.423182 AGGTAGATAGATTAGCTAGCCTCTG 58.577 44.000 12.13 0.00 43.89 3.35
980 1094 6.820656 ACCAGAGAAGTATACAAGCTTGATTG 59.179 38.462 32.50 7.61 36.22 2.67
1017 1131 2.203070 ATGATGCGCGGGAAGGAC 60.203 61.111 8.83 0.00 0.00 3.85
1407 1521 2.819595 GCCAAGCGCCTCATCGAA 60.820 61.111 2.29 0.00 0.00 3.71
1482 1596 3.173240 GACGTCGACAAGCTCGCC 61.173 66.667 17.16 0.00 42.62 5.54
1491 1605 1.192146 ACAAGCTCGCCTCCAAGGTA 61.192 55.000 0.00 0.00 37.80 3.08
1493 1607 0.036294 AAGCTCGCCTCCAAGGTAAC 60.036 55.000 0.00 0.00 37.80 2.50
1512 1626 5.934043 GGTAACCTTCTTTTCTTTACCGCTA 59.066 40.000 0.00 0.00 34.10 4.26
1513 1627 6.091849 GGTAACCTTCTTTTCTTTACCGCTAG 59.908 42.308 0.00 0.00 34.10 3.42
1514 1628 4.001652 ACCTTCTTTTCTTTACCGCTAGC 58.998 43.478 4.06 4.06 0.00 3.42
1515 1629 4.254492 CCTTCTTTTCTTTACCGCTAGCT 58.746 43.478 13.93 0.00 0.00 3.32
1570 1684 2.044946 GCTTCCGTTCCATGGGCT 60.045 61.111 13.02 0.00 0.00 5.19
1571 1685 2.409870 GCTTCCGTTCCATGGGCTG 61.410 63.158 13.02 1.23 0.00 4.85
1579 1693 1.270550 GTTCCATGGGCTGTTGAGTTG 59.729 52.381 13.02 0.00 0.00 3.16
1582 1696 2.575735 TCCATGGGCTGTTGAGTTGATA 59.424 45.455 13.02 0.00 0.00 2.15
1583 1697 3.202818 TCCATGGGCTGTTGAGTTGATAT 59.797 43.478 13.02 0.00 0.00 1.63
1585 1699 3.003394 TGGGCTGTTGAGTTGATATGG 57.997 47.619 0.00 0.00 0.00 2.74
1586 1700 1.678101 GGGCTGTTGAGTTGATATGGC 59.322 52.381 0.00 0.00 0.00 4.40
1587 1701 2.648059 GGCTGTTGAGTTGATATGGCT 58.352 47.619 0.00 0.00 0.00 4.75
1597 1718 3.527360 GATATGGCTTGGCGTGCGC 62.527 63.158 8.17 8.17 41.06 6.09
1660 1781 2.610859 AAGGTGGTGGAGGCCGAT 60.611 61.111 0.00 0.00 0.00 4.18
1744 1865 3.112709 GACGTCAAGGACCAGCGC 61.113 66.667 11.55 0.00 0.00 5.92
1821 1942 4.301628 GCCAAGATGACCAAGAAAAACAG 58.698 43.478 0.00 0.00 0.00 3.16
1997 2118 1.533033 TTCGACCTGCTGTCCTCCA 60.533 57.895 0.00 0.00 41.18 3.86
2011 2132 1.219393 CTCCACGCCCTCTTCTTCC 59.781 63.158 0.00 0.00 0.00 3.46
2100 2221 2.180276 GCTCTTCTAGAGGTTGGGACA 58.820 52.381 1.31 0.00 42.54 4.02
2195 2339 4.843516 ACATTGTTCCCTTCTTCTCTCTCT 59.156 41.667 0.00 0.00 0.00 3.10
2196 2340 5.046663 ACATTGTTCCCTTCTTCTCTCTCTC 60.047 44.000 0.00 0.00 0.00 3.20
2197 2341 4.396357 TGTTCCCTTCTTCTCTCTCTCT 57.604 45.455 0.00 0.00 0.00 3.10
2198 2342 4.340617 TGTTCCCTTCTTCTCTCTCTCTC 58.659 47.826 0.00 0.00 0.00 3.20
2199 2343 4.044065 TGTTCCCTTCTTCTCTCTCTCTCT 59.956 45.833 0.00 0.00 0.00 3.10
2200 2344 4.503714 TCCCTTCTTCTCTCTCTCTCTC 57.496 50.000 0.00 0.00 0.00 3.20
2201 2345 4.111577 TCCCTTCTTCTCTCTCTCTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
2202 2346 4.164221 TCCCTTCTTCTCTCTCTCTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
2203 2347 4.164988 CCCTTCTTCTCTCTCTCTCTCTCT 59.835 50.000 0.00 0.00 0.00 3.10
2204 2348 5.363939 CCTTCTTCTCTCTCTCTCTCTCTC 58.636 50.000 0.00 0.00 0.00 3.20
2320 2466 2.305927 ACTCCCAAATCCACACGAAGAT 59.694 45.455 0.00 0.00 0.00 2.40
2321 2467 3.517901 ACTCCCAAATCCACACGAAGATA 59.482 43.478 0.00 0.00 0.00 1.98
2322 2468 3.869065 TCCCAAATCCACACGAAGATAC 58.131 45.455 0.00 0.00 0.00 2.24
2323 2469 3.262151 TCCCAAATCCACACGAAGATACA 59.738 43.478 0.00 0.00 0.00 2.29
2324 2470 3.374058 CCCAAATCCACACGAAGATACAC 59.626 47.826 0.00 0.00 0.00 2.90
2333 2479 2.475111 CACGAAGATACACACACACACC 59.525 50.000 0.00 0.00 0.00 4.16
2345 2491 3.196469 ACACACACACCCATGATCTCTAG 59.804 47.826 0.00 0.00 0.00 2.43
2354 2500 3.010420 CCATGATCTCTAGGCATGCATG 58.990 50.000 22.70 22.70 38.40 4.06
2504 2656 6.183360 TGTCTTATACGTGAGGGATGTACTTG 60.183 42.308 0.00 0.00 0.00 3.16
2512 2664 5.298527 CGTGAGGGATGTACTTGTACTATGA 59.701 44.000 11.53 0.00 0.00 2.15
2513 2665 6.016192 CGTGAGGGATGTACTTGTACTATGAT 60.016 42.308 11.53 0.00 0.00 2.45
2514 2666 7.371936 GTGAGGGATGTACTTGTACTATGATC 58.628 42.308 11.53 6.49 0.00 2.92
2515 2667 6.493802 TGAGGGATGTACTTGTACTATGATCC 59.506 42.308 14.53 14.53 0.00 3.36
2519 2671 7.030165 GGATGTACTTGTACTATGATCCATCG 58.970 42.308 16.50 0.00 0.00 3.84
2742 2914 6.069088 TGTTTGTCCATCCCTTAATGTAGGAT 60.069 38.462 0.00 0.00 41.16 3.24
2743 2915 7.128109 TGTTTGTCCATCCCTTAATGTAGGATA 59.872 37.037 0.00 0.00 38.36 2.59
2744 2916 6.935240 TGTCCATCCCTTAATGTAGGATAG 57.065 41.667 0.00 0.00 38.36 2.08
2822 2994 8.144478 TGTCCTCTAGTATATGCTGAATTTGTC 58.856 37.037 3.24 0.00 0.00 3.18
2888 3068 7.659390 GGGCTGAGGAGATATACATATATTTGC 59.341 40.741 0.00 0.00 0.00 3.68
2999 3182 6.378582 ACGGCAAAAACAACAATACTCATAG 58.621 36.000 0.00 0.00 0.00 2.23
3000 3183 6.016610 ACGGCAAAAACAACAATACTCATAGT 60.017 34.615 0.00 0.00 0.00 2.12
3001 3184 7.173562 ACGGCAAAAACAACAATACTCATAGTA 59.826 33.333 0.00 0.00 34.82 1.82
3002 3185 8.181573 CGGCAAAAACAACAATACTCATAGTAT 58.818 33.333 0.00 0.00 42.86 2.12
3046 3229 6.962182 TGATTCCTTACAATGATCTTCTGGT 58.038 36.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.398390 GGAGTACGTACGTGGGTGTAG 59.602 57.143 30.25 0.00 0.00 2.74
221 254 1.405821 CTCACCGCTCCTATTCGTTCT 59.594 52.381 0.00 0.00 0.00 3.01
265 298 2.041153 CCGCCTCTTTGTTGGCTTT 58.959 52.632 0.00 0.00 46.42 3.51
356 390 1.070445 CTGGACGGCTCCATCCATC 59.930 63.158 3.99 0.00 46.18 3.51
363 397 2.125350 CTTGCTCTGGACGGCTCC 60.125 66.667 0.00 0.00 37.04 4.70
455 494 1.218875 TTCTGTGTGCGTACGCTTGG 61.219 55.000 36.99 22.46 42.51 3.61
507 551 1.305046 CCGGACAGGAGGTGGTACT 60.305 63.158 0.00 0.00 45.00 2.73
508 552 1.602327 GACCGGACAGGAGGTGGTAC 61.602 65.000 9.46 0.00 45.00 3.34
512 574 2.283966 AGGACCGGACAGGAGGTG 60.284 66.667 9.46 0.00 45.00 4.00
548 610 5.323371 TGTGATGAGTGTCATTGATCGTA 57.677 39.130 0.00 0.00 37.20 3.43
564 626 1.888512 CCAGGTTTTCACCCTGTGATG 59.111 52.381 5.78 0.00 46.68 3.07
585 652 6.937436 AATTGGTCTGGAAATTACGGATAC 57.063 37.500 0.00 0.00 0.00 2.24
586 653 8.047911 TGTAAATTGGTCTGGAAATTACGGATA 58.952 33.333 0.00 0.00 0.00 2.59
587 654 6.887545 TGTAAATTGGTCTGGAAATTACGGAT 59.112 34.615 0.00 0.00 0.00 4.18
588 655 6.239396 TGTAAATTGGTCTGGAAATTACGGA 58.761 36.000 0.00 0.00 0.00 4.69
598 665 2.972625 TCTCGCTGTAAATTGGTCTGG 58.027 47.619 0.00 0.00 0.00 3.86
602 669 3.055094 ACCTGATCTCGCTGTAAATTGGT 60.055 43.478 0.00 0.00 0.00 3.67
640 707 1.379044 GGTGTGGGGCAAGATCTGG 60.379 63.158 0.00 0.00 0.00 3.86
806 887 1.208706 GGAGGGGGAGGAAGAAGAAG 58.791 60.000 0.00 0.00 0.00 2.85
820 901 0.755698 TCGAGAAATCGGGAGGAGGG 60.756 60.000 0.00 0.00 0.00 4.30
826 907 1.745827 GCCCAATTCGAGAAATCGGGA 60.746 52.381 16.80 0.00 32.11 5.14
829 910 1.258982 CGAGCCCAATTCGAGAAATCG 59.741 52.381 0.00 0.00 40.36 3.34
838 922 2.001872 CCAAAATTGCGAGCCCAATTC 58.998 47.619 7.71 0.00 42.78 2.17
861 945 3.118261 TGCAGGAAGAGGCTAATACAAGG 60.118 47.826 0.00 0.00 0.00 3.61
864 948 2.837591 TGTGCAGGAAGAGGCTAATACA 59.162 45.455 0.00 0.00 0.00 2.29
866 950 5.147767 TCTATGTGCAGGAAGAGGCTAATA 58.852 41.667 0.00 0.00 0.00 0.98
867 951 3.969976 TCTATGTGCAGGAAGAGGCTAAT 59.030 43.478 0.00 0.00 0.00 1.73
868 952 3.374764 TCTATGTGCAGGAAGAGGCTAA 58.625 45.455 0.00 0.00 0.00 3.09
886 970 3.190327 GCTTGCTATCGATGCTCTCTCTA 59.810 47.826 8.54 0.00 0.00 2.43
900 1014 3.906846 ACCTAGCCTAATCAGCTTGCTAT 59.093 43.478 0.00 0.00 41.83 2.97
907 1021 7.654022 AATCTATCTACCTAGCCTAATCAGC 57.346 40.000 0.00 0.00 0.00 4.26
908 1022 8.846211 GCTAATCTATCTACCTAGCCTAATCAG 58.154 40.741 0.00 0.00 30.87 2.90
912 1026 7.994334 GCTAGCTAATCTATCTACCTAGCCTAA 59.006 40.741 7.70 0.00 39.99 2.69
938 1052 3.767806 TCAGAGCCGCAGCAGAGG 61.768 66.667 0.00 0.00 43.56 3.69
939 1053 2.508887 GTCAGAGCCGCAGCAGAG 60.509 66.667 0.00 0.00 43.56 3.35
940 1054 4.074526 GGTCAGAGCCGCAGCAGA 62.075 66.667 0.00 0.00 43.56 4.26
941 1055 4.383861 TGGTCAGAGCCGCAGCAG 62.384 66.667 0.00 0.00 43.56 4.24
942 1056 4.383861 CTGGTCAGAGCCGCAGCA 62.384 66.667 0.00 0.00 43.56 4.41
943 1057 4.074526 TCTGGTCAGAGCCGCAGC 62.075 66.667 0.00 0.00 40.32 5.25
964 1078 5.036117 TCCTCCCAATCAAGCTTGTATAC 57.964 43.478 25.19 0.00 0.00 1.47
980 1094 0.105778 CTTGGCTTCGATCTCCTCCC 59.894 60.000 0.00 0.00 0.00 4.30
1254 1368 2.604686 TGCAGCCCCGTCTTCTCT 60.605 61.111 0.00 0.00 0.00 3.10
1407 1521 4.408821 TTGGCATTCCGGCGCTCT 62.409 61.111 7.64 0.00 45.16 4.09
1447 1561 4.560856 GAGGCTGACGCGCGAGAT 62.561 66.667 39.36 15.50 36.88 2.75
1482 1596 6.961360 AAAGAAAAGAAGGTTACCTTGGAG 57.039 37.500 22.57 0.00 44.82 3.86
1491 1605 4.454847 GCTAGCGGTAAAGAAAAGAAGGTT 59.545 41.667 0.00 0.00 0.00 3.50
1493 1607 4.254492 AGCTAGCGGTAAAGAAAAGAAGG 58.746 43.478 9.55 0.00 0.00 3.46
1512 1626 3.782523 TCAACAAATATGGAGGAGGAGCT 59.217 43.478 0.00 0.00 0.00 4.09
1513 1627 4.156455 TCAACAAATATGGAGGAGGAGC 57.844 45.455 0.00 0.00 0.00 4.70
1514 1628 8.159447 TGAATATCAACAAATATGGAGGAGGAG 58.841 37.037 0.00 0.00 0.00 3.69
1515 1629 8.044574 TGAATATCAACAAATATGGAGGAGGA 57.955 34.615 0.00 0.00 0.00 3.71
1557 1671 1.303236 TCAACAGCCCATGGAACGG 60.303 57.895 15.22 8.34 0.00 4.44
1558 1672 0.606401 ACTCAACAGCCCATGGAACG 60.606 55.000 15.22 2.73 0.00 3.95
1559 1673 1.270550 CAACTCAACAGCCCATGGAAC 59.729 52.381 15.22 4.77 0.00 3.62
1560 1674 1.144708 TCAACTCAACAGCCCATGGAA 59.855 47.619 15.22 0.00 0.00 3.53
1564 1678 3.559069 CCATATCAACTCAACAGCCCAT 58.441 45.455 0.00 0.00 0.00 4.00
1570 1684 2.754552 GCCAAGCCATATCAACTCAACA 59.245 45.455 0.00 0.00 0.00 3.33
1571 1685 2.223340 CGCCAAGCCATATCAACTCAAC 60.223 50.000 0.00 0.00 0.00 3.18
1579 1693 2.633657 CGCACGCCAAGCCATATC 59.366 61.111 0.00 0.00 0.00 1.63
1660 1781 2.596338 TCGGTGAGCGTGACCAGA 60.596 61.111 3.30 0.00 32.45 3.86
1744 1865 2.419198 CGCTTCTCCTGGATCCGG 59.581 66.667 14.26 14.26 0.00 5.14
1806 1927 4.638421 CAGGTGTACTGTTTTTCTTGGTCA 59.362 41.667 0.00 0.00 42.42 4.02
1821 1942 2.966309 GCCGTTGCAGCAGGTGTAC 61.966 63.158 0.24 0.00 37.47 2.90
1997 2118 1.545706 GGTGAGGAAGAAGAGGGCGT 61.546 60.000 0.00 0.00 0.00 5.68
2162 2305 4.104383 AGGGAACAATGTGACAGTTGAT 57.896 40.909 12.42 3.50 0.00 2.57
2195 2339 4.714308 GGAAGGAAAGAATGGAGAGAGAGA 59.286 45.833 0.00 0.00 0.00 3.10
2196 2340 4.469227 TGGAAGGAAAGAATGGAGAGAGAG 59.531 45.833 0.00 0.00 0.00 3.20
2197 2341 4.429505 TGGAAGGAAAGAATGGAGAGAGA 58.570 43.478 0.00 0.00 0.00 3.10
2198 2342 4.833478 TGGAAGGAAAGAATGGAGAGAG 57.167 45.455 0.00 0.00 0.00 3.20
2199 2343 5.035556 AGATGGAAGGAAAGAATGGAGAGA 58.964 41.667 0.00 0.00 0.00 3.10
2200 2344 5.370875 AGATGGAAGGAAAGAATGGAGAG 57.629 43.478 0.00 0.00 0.00 3.20
2201 2345 5.786121 AAGATGGAAGGAAAGAATGGAGA 57.214 39.130 0.00 0.00 0.00 3.71
2202 2346 5.713861 ACAAAGATGGAAGGAAAGAATGGAG 59.286 40.000 0.00 0.00 0.00 3.86
2203 2347 5.644188 ACAAAGATGGAAGGAAAGAATGGA 58.356 37.500 0.00 0.00 0.00 3.41
2204 2348 5.990120 ACAAAGATGGAAGGAAAGAATGG 57.010 39.130 0.00 0.00 0.00 3.16
2320 2466 2.637382 AGATCATGGGTGTGTGTGTGTA 59.363 45.455 0.00 0.00 0.00 2.90
2321 2467 1.421268 AGATCATGGGTGTGTGTGTGT 59.579 47.619 0.00 0.00 0.00 3.72
2322 2468 2.079158 GAGATCATGGGTGTGTGTGTG 58.921 52.381 0.00 0.00 0.00 3.82
2323 2469 1.980765 AGAGATCATGGGTGTGTGTGT 59.019 47.619 0.00 0.00 0.00 3.72
2324 2470 2.775911 AGAGATCATGGGTGTGTGTG 57.224 50.000 0.00 0.00 0.00 3.82
2333 2479 2.853235 TGCATGCCTAGAGATCATGG 57.147 50.000 16.68 0.00 38.33 3.66
2354 2500 4.107051 GCACAGCACACCCGATGC 62.107 66.667 0.00 0.00 43.74 3.91
2355 2501 2.359107 AGCACAGCACACCCGATG 60.359 61.111 0.00 0.00 0.00 3.84
2356 2502 2.359107 CAGCACAGCACACCCGAT 60.359 61.111 0.00 0.00 0.00 4.18
2487 2639 3.428532 AGTACAAGTACATCCCTCACGT 58.571 45.455 12.43 0.00 38.48 4.49
2512 2664 5.034852 TGTACAATGTTGGATCGATGGAT 57.965 39.130 0.54 0.00 34.96 3.41
2513 2665 4.479786 TGTACAATGTTGGATCGATGGA 57.520 40.909 0.54 0.00 0.00 3.41
2514 2666 5.106357 TGTTTGTACAATGTTGGATCGATGG 60.106 40.000 9.56 0.00 0.00 3.51
2515 2667 5.937187 TGTTTGTACAATGTTGGATCGATG 58.063 37.500 9.56 0.00 0.00 3.84
2519 2671 6.646240 AGCATTTGTTTGTACAATGTTGGATC 59.354 34.615 9.56 0.00 43.43 3.36
2742 2914 4.020485 GCCAGAGGTGAAGAAAAGGTACTA 60.020 45.833 0.00 0.00 38.49 1.82
2744 2916 3.075148 GCCAGAGGTGAAGAAAAGGTAC 58.925 50.000 0.00 0.00 0.00 3.34
2888 3068 3.485877 GCTTCAAGCTTATACCAAGCACG 60.486 47.826 0.71 2.27 45.30 5.34
3003 3186 9.824216 AGGAATCAGCCTGTAATAATAGTAGTA 57.176 33.333 0.00 0.00 36.76 1.82
3004 3187 8.728596 AGGAATCAGCCTGTAATAATAGTAGT 57.271 34.615 0.00 0.00 36.76 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.