Multiple sequence alignment - TraesCS7A01G269000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G269000 chr7A 100.000 2295 0 0 1 2295 273009628 273007334 0.000000e+00 4239.0
1 TraesCS7A01G269000 chr7D 97.701 870 16 3 1427 2295 254585187 254584321 0.000000e+00 1493.0
2 TraesCS7A01G269000 chr7D 92.537 67 2 2 1347 1412 254587500 254587436 2.430000e-15 93.5
3 TraesCS7A01G269000 chr7B 96.949 885 22 4 1411 2295 231734607 231733728 0.000000e+00 1480.0
4 TraesCS7A01G269000 chr7B 78.526 936 181 17 1 924 723406686 723407613 4.220000e-167 597.0
5 TraesCS7A01G269000 chr7B 78.396 935 182 17 2 924 723247446 723248372 7.060000e-165 590.0
6 TraesCS7A01G269000 chr2A 89.597 942 86 6 1 932 14495494 14496433 0.000000e+00 1186.0
7 TraesCS7A01G269000 chr6D 85.912 937 124 8 1 932 348093540 348092607 0.000000e+00 992.0
8 TraesCS7A01G269000 chr6B 83.706 939 122 23 1 932 99928693 99927779 0.000000e+00 857.0
9 TraesCS7A01G269000 chr2B 81.316 942 150 19 1 927 138645115 138646045 0.000000e+00 741.0
10 TraesCS7A01G269000 chr3A 80.576 937 163 14 1 927 741124396 741125323 0.000000e+00 704.0
11 TraesCS7A01G269000 chrUn 94.286 420 22 1 929 1346 363111149 363111568 1.920000e-180 641.0
12 TraesCS7A01G269000 chrUn 94.686 414 20 1 935 1346 432624361 432623948 1.920000e-180 641.0
13 TraesCS7A01G269000 chrUn 94.686 414 20 1 935 1346 432828253 432827840 1.920000e-180 641.0
14 TraesCS7A01G269000 chrUn 94.686 414 20 1 935 1346 433184342 433183929 1.920000e-180 641.0
15 TraesCS7A01G269000 chrUn 94.444 414 21 1 935 1346 67509850 67509437 8.940000e-179 636.0
16 TraesCS7A01G269000 chrUn 94.048 420 23 1 929 1346 199875752 199876171 8.940000e-179 636.0
17 TraesCS7A01G269000 chrUn 94.048 420 23 1 929 1346 199905672 199906091 8.940000e-179 636.0
18 TraesCS7A01G269000 chrUn 94.444 414 21 1 935 1346 229309293 229308880 8.940000e-179 636.0
19 TraesCS7A01G269000 chr1B 94.286 420 22 1 929 1346 544624564 544624983 1.920000e-180 641.0
20 TraesCS7A01G269000 chr1D 79.237 944 168 25 7 933 42015538 42014606 1.160000e-177 632.0
21 TraesCS7A01G269000 chr5D 81.928 664 113 7 7 667 479880664 479880005 2.580000e-154 555.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G269000 chr7A 273007334 273009628 2294 True 4239.00 4239 100.000 1 2295 1 chr7A.!!$R1 2294
1 TraesCS7A01G269000 chr7D 254584321 254587500 3179 True 793.25 1493 95.119 1347 2295 2 chr7D.!!$R1 948
2 TraesCS7A01G269000 chr7B 231733728 231734607 879 True 1480.00 1480 96.949 1411 2295 1 chr7B.!!$R1 884
3 TraesCS7A01G269000 chr7B 723406686 723407613 927 False 597.00 597 78.526 1 924 1 chr7B.!!$F2 923
4 TraesCS7A01G269000 chr7B 723247446 723248372 926 False 590.00 590 78.396 2 924 1 chr7B.!!$F1 922
5 TraesCS7A01G269000 chr2A 14495494 14496433 939 False 1186.00 1186 89.597 1 932 1 chr2A.!!$F1 931
6 TraesCS7A01G269000 chr6D 348092607 348093540 933 True 992.00 992 85.912 1 932 1 chr6D.!!$R1 931
7 TraesCS7A01G269000 chr6B 99927779 99928693 914 True 857.00 857 83.706 1 932 1 chr6B.!!$R1 931
8 TraesCS7A01G269000 chr2B 138645115 138646045 930 False 741.00 741 81.316 1 927 1 chr2B.!!$F1 926
9 TraesCS7A01G269000 chr3A 741124396 741125323 927 False 704.00 704 80.576 1 927 1 chr3A.!!$F1 926
10 TraesCS7A01G269000 chr1D 42014606 42015538 932 True 632.00 632 79.237 7 933 1 chr1D.!!$R1 926
11 TraesCS7A01G269000 chr5D 479880005 479880664 659 True 555.00 555 81.928 7 667 1 chr5D.!!$R1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
657 661 0.036388 ATTGATTCCGCACGTCCTGT 60.036 50.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 4037 0.603707 CGAGCTTTCTGCCCAACTGA 60.604 55.0 0.0 0.0 44.23 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.202830 TGGTACAAAACGGACCAGCAT 60.203 47.619 0.00 0.00 38.34 3.79
175 176 1.589716 GCAGCAACTTTCTCCGCCAT 61.590 55.000 0.00 0.00 0.00 4.40
183 184 2.031120 CTTTCTCCGCCATCTCTCTCT 58.969 52.381 0.00 0.00 0.00 3.10
341 343 5.853922 TCCATCCATAATCTTCCTCCAATCT 59.146 40.000 0.00 0.00 0.00 2.40
401 403 3.885976 TTGACATTGAAGGTAACCCCA 57.114 42.857 0.00 0.00 34.66 4.96
493 495 1.294780 CGAAAGAGAGCCAGCCAGT 59.705 57.895 0.00 0.00 0.00 4.00
542 544 3.261897 TCCTCCGAGAAATCAAGCTCTTT 59.738 43.478 0.00 0.00 0.00 2.52
554 556 2.834549 CAAGCTCTTTCTCCTCCCTACA 59.165 50.000 0.00 0.00 0.00 2.74
558 560 3.198853 GCTCTTTCTCCTCCCTACAATGT 59.801 47.826 0.00 0.00 0.00 2.71
569 571 5.131142 CCTCCCTACAATGTAGTTTCATCCT 59.869 44.000 18.00 0.00 0.00 3.24
642 646 2.500098 CTCCTCGTACCCCTCAAATTGA 59.500 50.000 0.00 0.00 0.00 2.57
657 661 0.036388 ATTGATTCCGCACGTCCTGT 60.036 50.000 0.00 0.00 0.00 4.00
700 704 1.063567 TCCTCCTAGCCTCTTCCTCAC 60.064 57.143 0.00 0.00 0.00 3.51
761 777 2.835431 ATCGCTACTGCCTCCGCT 60.835 61.111 0.00 0.00 35.36 5.52
766 782 1.797211 GCTACTGCCTCCGCTATCGT 61.797 60.000 0.00 0.00 35.36 3.73
770 786 1.739338 CTGCCTCCGCTATCGTTCCT 61.739 60.000 0.00 0.00 35.36 3.36
841 857 1.171308 CACGACGGGAGAAGGTAGAA 58.829 55.000 0.00 0.00 0.00 2.10
868 886 4.821589 GGCCAGAGAAGACCGGCG 62.822 72.222 0.00 0.00 45.85 6.46
941 962 2.744352 CCTAGGGGAACTAGTACCGT 57.256 55.000 14.00 14.00 46.39 4.83
942 963 3.023939 CCTAGGGGAACTAGTACCGTT 57.976 52.381 14.56 7.06 46.39 4.44
943 964 2.954989 CCTAGGGGAACTAGTACCGTTC 59.045 54.545 14.56 14.19 46.39 3.95
944 965 2.610438 AGGGGAACTAGTACCGTTCA 57.390 50.000 20.64 0.00 41.86 3.18
945 966 2.174360 AGGGGAACTAGTACCGTTCAC 58.826 52.381 20.64 18.35 42.58 3.18
946 967 1.135286 GGGGAACTAGTACCGTTCACG 60.135 57.143 20.64 0.00 43.87 4.35
947 968 1.622232 GGAACTAGTACCGTTCACGC 58.378 55.000 20.64 6.40 41.86 5.34
948 969 1.622232 GAACTAGTACCGTTCACGCC 58.378 55.000 16.51 0.00 40.27 5.68
949 970 0.244721 AACTAGTACCGTTCACGCCC 59.755 55.000 0.00 0.00 38.18 6.13
950 971 1.226491 CTAGTACCGTTCACGCCCG 60.226 63.158 0.00 0.00 38.18 6.13
955 976 4.752879 CCGTTCACGCCCGGTCAT 62.753 66.667 0.00 0.00 39.38 3.06
956 977 2.182284 CGTTCACGCCCGGTCATA 59.818 61.111 0.00 0.00 0.00 2.15
957 978 2.162754 CGTTCACGCCCGGTCATAC 61.163 63.158 0.00 0.00 0.00 2.39
958 979 1.217244 GTTCACGCCCGGTCATACT 59.783 57.895 0.00 0.00 0.00 2.12
959 980 0.804933 GTTCACGCCCGGTCATACTC 60.805 60.000 0.00 0.00 0.00 2.59
960 981 1.252215 TTCACGCCCGGTCATACTCA 61.252 55.000 0.00 0.00 0.00 3.41
961 982 1.040893 TCACGCCCGGTCATACTCAT 61.041 55.000 0.00 0.00 0.00 2.90
962 983 0.671796 CACGCCCGGTCATACTCATA 59.328 55.000 0.00 0.00 0.00 2.15
963 984 1.067974 CACGCCCGGTCATACTCATAA 59.932 52.381 0.00 0.00 0.00 1.90
964 985 1.068127 ACGCCCGGTCATACTCATAAC 59.932 52.381 0.00 0.00 0.00 1.89
965 986 1.604693 CGCCCGGTCATACTCATAACC 60.605 57.143 0.00 0.00 0.00 2.85
968 989 2.502213 CGGTCATACTCATAACCGCA 57.498 50.000 0.00 0.00 46.89 5.69
969 990 3.026630 CGGTCATACTCATAACCGCAT 57.973 47.619 0.00 0.00 46.89 4.73
970 991 2.987149 CGGTCATACTCATAACCGCATC 59.013 50.000 0.00 0.00 46.89 3.91
971 992 3.552068 CGGTCATACTCATAACCGCATCA 60.552 47.826 0.00 0.00 46.89 3.07
972 993 4.377021 GGTCATACTCATAACCGCATCAA 58.623 43.478 0.00 0.00 0.00 2.57
973 994 4.814234 GGTCATACTCATAACCGCATCAAA 59.186 41.667 0.00 0.00 0.00 2.69
974 995 5.470098 GGTCATACTCATAACCGCATCAAAT 59.530 40.000 0.00 0.00 0.00 2.32
975 996 6.347725 GGTCATACTCATAACCGCATCAAATC 60.348 42.308 0.00 0.00 0.00 2.17
976 997 6.425114 GTCATACTCATAACCGCATCAAATCT 59.575 38.462 0.00 0.00 0.00 2.40
977 998 6.646653 TCATACTCATAACCGCATCAAATCTC 59.353 38.462 0.00 0.00 0.00 2.75
978 999 4.130118 ACTCATAACCGCATCAAATCTCC 58.870 43.478 0.00 0.00 0.00 3.71
979 1000 4.129380 CTCATAACCGCATCAAATCTCCA 58.871 43.478 0.00 0.00 0.00 3.86
980 1001 4.522114 TCATAACCGCATCAAATCTCCAA 58.478 39.130 0.00 0.00 0.00 3.53
981 1002 4.576053 TCATAACCGCATCAAATCTCCAAG 59.424 41.667 0.00 0.00 0.00 3.61
982 1003 1.755179 ACCGCATCAAATCTCCAAGG 58.245 50.000 0.00 0.00 0.00 3.61
983 1004 1.004745 ACCGCATCAAATCTCCAAGGT 59.995 47.619 0.00 0.00 0.00 3.50
984 1005 1.402968 CCGCATCAAATCTCCAAGGTG 59.597 52.381 0.00 0.00 0.00 4.00
985 1006 2.358957 CGCATCAAATCTCCAAGGTGA 58.641 47.619 0.00 0.00 0.00 4.02
986 1007 2.749076 CGCATCAAATCTCCAAGGTGAA 59.251 45.455 0.00 0.00 0.00 3.18
987 1008 3.426695 CGCATCAAATCTCCAAGGTGAAC 60.427 47.826 0.00 0.00 0.00 3.18
988 1009 3.507233 GCATCAAATCTCCAAGGTGAACA 59.493 43.478 0.00 0.00 0.00 3.18
989 1010 4.616835 GCATCAAATCTCCAAGGTGAACAC 60.617 45.833 0.00 0.00 0.00 3.32
999 1020 2.142220 GGTGAACACCCTCTGACCA 58.858 57.895 12.42 0.00 45.68 4.02
1000 1021 0.472471 GGTGAACACCCTCTGACCAA 59.528 55.000 12.42 0.00 45.68 3.67
1001 1022 1.073923 GGTGAACACCCTCTGACCAAT 59.926 52.381 12.42 0.00 45.68 3.16
1002 1023 2.154462 GTGAACACCCTCTGACCAATG 58.846 52.381 0.00 0.00 0.00 2.82
1003 1024 2.054021 TGAACACCCTCTGACCAATGA 58.946 47.619 0.00 0.00 0.00 2.57
1004 1025 2.441375 TGAACACCCTCTGACCAATGAA 59.559 45.455 0.00 0.00 0.00 2.57
1005 1026 3.117701 TGAACACCCTCTGACCAATGAAA 60.118 43.478 0.00 0.00 0.00 2.69
1006 1027 2.863809 ACACCCTCTGACCAATGAAAC 58.136 47.619 0.00 0.00 0.00 2.78
1007 1028 2.174639 ACACCCTCTGACCAATGAAACA 59.825 45.455 0.00 0.00 0.00 2.83
1008 1029 3.221771 CACCCTCTGACCAATGAAACAA 58.778 45.455 0.00 0.00 0.00 2.83
1009 1030 3.828451 CACCCTCTGACCAATGAAACAAT 59.172 43.478 0.00 0.00 0.00 2.71
1010 1031 3.828451 ACCCTCTGACCAATGAAACAATG 59.172 43.478 0.00 0.00 0.00 2.82
1011 1032 3.828451 CCCTCTGACCAATGAAACAATGT 59.172 43.478 0.00 0.00 0.00 2.71
1012 1033 5.009631 CCCTCTGACCAATGAAACAATGTA 58.990 41.667 0.00 0.00 0.00 2.29
1013 1034 5.124457 CCCTCTGACCAATGAAACAATGTAG 59.876 44.000 0.00 0.00 0.00 2.74
1014 1035 5.124457 CCTCTGACCAATGAAACAATGTAGG 59.876 44.000 0.00 0.00 0.00 3.18
1015 1036 4.458989 TCTGACCAATGAAACAATGTAGGC 59.541 41.667 0.00 0.00 0.00 3.93
1016 1037 4.148079 TGACCAATGAAACAATGTAGGCA 58.852 39.130 0.00 0.00 0.00 4.75
1017 1038 4.586421 TGACCAATGAAACAATGTAGGCAA 59.414 37.500 0.00 0.00 0.00 4.52
1018 1039 5.138125 ACCAATGAAACAATGTAGGCAAG 57.862 39.130 0.00 0.00 0.00 4.01
1019 1040 4.021192 ACCAATGAAACAATGTAGGCAAGG 60.021 41.667 0.00 0.00 0.00 3.61
1020 1041 4.497300 CAATGAAACAATGTAGGCAAGGG 58.503 43.478 0.00 0.00 0.00 3.95
1021 1042 3.517296 TGAAACAATGTAGGCAAGGGA 57.483 42.857 0.00 0.00 0.00 4.20
1022 1043 3.838565 TGAAACAATGTAGGCAAGGGAA 58.161 40.909 0.00 0.00 0.00 3.97
1023 1044 3.826157 TGAAACAATGTAGGCAAGGGAAG 59.174 43.478 0.00 0.00 0.00 3.46
1024 1045 3.525800 AACAATGTAGGCAAGGGAAGT 57.474 42.857 0.00 0.00 0.00 3.01
1025 1046 3.073274 ACAATGTAGGCAAGGGAAGTC 57.927 47.619 0.00 0.00 0.00 3.01
1026 1047 2.009774 CAATGTAGGCAAGGGAAGTCG 58.990 52.381 0.00 0.00 0.00 4.18
1027 1048 0.541863 ATGTAGGCAAGGGAAGTCGG 59.458 55.000 0.00 0.00 0.00 4.79
1028 1049 1.449778 GTAGGCAAGGGAAGTCGGC 60.450 63.158 0.00 0.00 0.00 5.54
1029 1050 1.916273 TAGGCAAGGGAAGTCGGCA 60.916 57.895 0.00 0.00 0.00 5.69
1030 1051 1.485294 TAGGCAAGGGAAGTCGGCAA 61.485 55.000 0.00 0.00 0.00 4.52
1031 1052 1.901464 GGCAAGGGAAGTCGGCAAA 60.901 57.895 0.00 0.00 0.00 3.68
1032 1053 1.460273 GGCAAGGGAAGTCGGCAAAA 61.460 55.000 0.00 0.00 0.00 2.44
1033 1054 0.318699 GCAAGGGAAGTCGGCAAAAC 60.319 55.000 0.00 0.00 0.00 2.43
1034 1055 0.040425 CAAGGGAAGTCGGCAAAACG 60.040 55.000 0.00 0.00 0.00 3.60
1035 1056 1.170290 AAGGGAAGTCGGCAAAACGG 61.170 55.000 0.00 0.00 0.00 4.44
1036 1057 1.598685 GGGAAGTCGGCAAAACGGA 60.599 57.895 0.00 0.00 0.00 4.69
1037 1058 0.958876 GGGAAGTCGGCAAAACGGAT 60.959 55.000 0.00 0.00 0.00 4.18
1038 1059 0.446616 GGAAGTCGGCAAAACGGATC 59.553 55.000 0.00 0.00 0.00 3.36
1039 1060 0.446616 GAAGTCGGCAAAACGGATCC 59.553 55.000 0.00 0.00 0.00 3.36
1040 1061 1.296056 AAGTCGGCAAAACGGATCCG 61.296 55.000 32.20 32.20 46.03 4.18
1059 1080 4.957759 CCGTAACTTCGGGAAAATGATT 57.042 40.909 0.00 0.00 45.88 2.57
1060 1081 4.658071 CCGTAACTTCGGGAAAATGATTG 58.342 43.478 0.00 0.00 45.88 2.67
1061 1082 4.438200 CCGTAACTTCGGGAAAATGATTGG 60.438 45.833 0.00 0.00 45.88 3.16
1062 1083 3.592898 AACTTCGGGAAAATGATTGGC 57.407 42.857 0.00 0.00 0.00 4.52
1063 1084 2.807676 ACTTCGGGAAAATGATTGGCT 58.192 42.857 0.00 0.00 0.00 4.75
1064 1085 2.755103 ACTTCGGGAAAATGATTGGCTC 59.245 45.455 0.00 0.00 0.00 4.70
1065 1086 2.806945 TCGGGAAAATGATTGGCTCT 57.193 45.000 0.00 0.00 0.00 4.09
1066 1087 2.368439 TCGGGAAAATGATTGGCTCTG 58.632 47.619 0.00 0.00 0.00 3.35
1067 1088 2.026356 TCGGGAAAATGATTGGCTCTGA 60.026 45.455 0.00 0.00 0.00 3.27
1068 1089 2.357009 CGGGAAAATGATTGGCTCTGAG 59.643 50.000 0.00 0.00 0.00 3.35
1069 1090 2.692041 GGGAAAATGATTGGCTCTGAGG 59.308 50.000 6.83 0.00 0.00 3.86
1070 1091 3.624777 GGAAAATGATTGGCTCTGAGGA 58.375 45.455 6.83 0.00 0.00 3.71
1071 1092 3.379688 GGAAAATGATTGGCTCTGAGGAC 59.620 47.826 6.83 0.00 0.00 3.85
1072 1093 4.268359 GAAAATGATTGGCTCTGAGGACT 58.732 43.478 6.83 0.00 0.00 3.85
1073 1094 3.278668 AATGATTGGCTCTGAGGACTG 57.721 47.619 6.83 0.00 0.00 3.51
1074 1095 0.907486 TGATTGGCTCTGAGGACTGG 59.093 55.000 6.83 0.00 0.00 4.00
1075 1096 0.179936 GATTGGCTCTGAGGACTGGG 59.820 60.000 6.83 0.00 0.00 4.45
1076 1097 1.919600 ATTGGCTCTGAGGACTGGGC 61.920 60.000 6.83 0.00 40.07 5.36
1077 1098 2.686835 GGCTCTGAGGACTGGGCT 60.687 66.667 6.83 0.00 40.52 5.19
1078 1099 2.730524 GGCTCTGAGGACTGGGCTC 61.731 68.421 6.83 0.00 40.52 4.70
1079 1100 3.074999 GCTCTGAGGACTGGGCTCG 62.075 68.421 6.83 0.00 38.22 5.03
1080 1101 2.363018 TCTGAGGACTGGGCTCGG 60.363 66.667 0.00 0.00 0.00 4.63
1081 1102 3.465403 CTGAGGACTGGGCTCGGG 61.465 72.222 0.00 0.00 0.00 5.14
1108 1129 4.636435 CCCGAACCCGTTGGCTGT 62.636 66.667 0.00 0.00 33.59 4.40
1109 1130 3.047877 CCGAACCCGTTGGCTGTC 61.048 66.667 0.00 0.00 33.59 3.51
1110 1131 3.411351 CGAACCCGTTGGCTGTCG 61.411 66.667 0.00 0.00 33.59 4.35
1111 1132 3.047877 GAACCCGTTGGCTGTCGG 61.048 66.667 8.17 8.17 45.42 4.79
1117 1138 2.746277 GTTGGCTGTCGGCGGATT 60.746 61.111 7.21 0.00 42.94 3.01
1118 1139 2.745884 TTGGCTGTCGGCGGATTG 60.746 61.111 7.21 0.00 42.94 2.67
1121 1142 3.567797 GCTGTCGGCGGATTGCTC 61.568 66.667 7.21 0.00 45.43 4.26
1122 1143 3.257561 CTGTCGGCGGATTGCTCG 61.258 66.667 7.21 0.00 45.43 5.03
1123 1144 3.699955 CTGTCGGCGGATTGCTCGA 62.700 63.158 7.21 0.00 45.43 4.04
1124 1145 2.956964 GTCGGCGGATTGCTCGAG 60.957 66.667 8.45 8.45 43.55 4.04
1125 1146 4.873129 TCGGCGGATTGCTCGAGC 62.873 66.667 30.42 30.42 45.43 5.03
1126 1147 4.880537 CGGCGGATTGCTCGAGCT 62.881 66.667 35.27 18.95 45.43 4.09
1127 1148 3.267860 GGCGGATTGCTCGAGCTG 61.268 66.667 35.27 20.77 45.43 4.24
1128 1149 3.934684 GCGGATTGCTCGAGCTGC 61.935 66.667 35.27 25.48 42.66 5.25
1129 1150 2.202851 CGGATTGCTCGAGCTGCT 60.203 61.111 35.27 20.77 42.66 4.24
1130 1151 2.236382 CGGATTGCTCGAGCTGCTC 61.236 63.158 35.27 26.32 42.66 4.26
1131 1152 1.153489 GGATTGCTCGAGCTGCTCA 60.153 57.895 35.27 14.66 42.66 4.26
1132 1153 1.427592 GGATTGCTCGAGCTGCTCAC 61.428 60.000 35.27 19.97 42.66 3.51
1133 1154 1.750572 GATTGCTCGAGCTGCTCACG 61.751 60.000 35.27 18.25 42.66 4.35
1180 1201 2.847715 GGGGGACGGATCGGGAAT 60.848 66.667 5.18 0.00 0.00 3.01
1181 1202 2.741747 GGGGACGGATCGGGAATC 59.258 66.667 5.18 0.00 0.00 2.52
1182 1203 2.338984 GGGACGGATCGGGAATCG 59.661 66.667 5.18 0.00 40.90 3.34
1183 1204 2.355956 GGACGGATCGGGAATCGC 60.356 66.667 5.18 0.00 39.05 4.58
1184 1205 2.355956 GACGGATCGGGAATCGCC 60.356 66.667 5.18 0.00 39.05 5.54
1210 1231 2.830370 GGCTTTCCCCGAGCATGG 60.830 66.667 0.00 0.00 41.89 3.66
1211 1232 2.272146 GCTTTCCCCGAGCATGGA 59.728 61.111 0.00 0.00 39.89 3.41
1212 1233 1.378514 GCTTTCCCCGAGCATGGAA 60.379 57.895 0.00 0.00 39.89 3.53
1213 1234 1.657751 GCTTTCCCCGAGCATGGAAC 61.658 60.000 0.00 0.00 40.27 3.62
1228 1249 3.536956 TGGAACAGTCGACTCAAAACT 57.463 42.857 16.96 0.00 0.00 2.66
1229 1250 3.194861 TGGAACAGTCGACTCAAAACTG 58.805 45.455 16.96 6.11 44.68 3.16
1230 1251 2.544267 GGAACAGTCGACTCAAAACTGG 59.456 50.000 16.96 4.28 43.69 4.00
1231 1252 2.981859 ACAGTCGACTCAAAACTGGT 57.018 45.000 16.96 5.00 43.69 4.00
1232 1253 2.550978 ACAGTCGACTCAAAACTGGTG 58.449 47.619 16.96 3.71 43.69 4.17
1233 1254 1.867233 CAGTCGACTCAAAACTGGTGG 59.133 52.381 16.96 0.00 37.38 4.61
1234 1255 1.760613 AGTCGACTCAAAACTGGTGGA 59.239 47.619 13.58 0.00 0.00 4.02
1235 1256 1.865340 GTCGACTCAAAACTGGTGGAC 59.135 52.381 8.70 0.00 33.27 4.02
1236 1257 1.483004 TCGACTCAAAACTGGTGGACA 59.517 47.619 0.00 0.00 0.00 4.02
1237 1258 2.093394 TCGACTCAAAACTGGTGGACAA 60.093 45.455 0.00 0.00 0.00 3.18
1238 1259 2.287915 CGACTCAAAACTGGTGGACAAG 59.712 50.000 0.00 0.00 0.00 3.16
1239 1260 2.618709 GACTCAAAACTGGTGGACAAGG 59.381 50.000 0.00 0.00 0.00 3.61
1240 1261 1.956477 CTCAAAACTGGTGGACAAGGG 59.044 52.381 0.00 0.00 0.00 3.95
1241 1262 1.039856 CAAAACTGGTGGACAAGGGG 58.960 55.000 0.00 0.00 0.00 4.79
1242 1263 0.930726 AAAACTGGTGGACAAGGGGA 59.069 50.000 0.00 0.00 0.00 4.81
1243 1264 0.930726 AAACTGGTGGACAAGGGGAA 59.069 50.000 0.00 0.00 0.00 3.97
1244 1265 1.158007 AACTGGTGGACAAGGGGAAT 58.842 50.000 0.00 0.00 0.00 3.01
1245 1266 0.698818 ACTGGTGGACAAGGGGAATC 59.301 55.000 0.00 0.00 0.00 2.52
1246 1267 0.034089 CTGGTGGACAAGGGGAATCC 60.034 60.000 0.00 0.00 0.00 3.01
1247 1268 0.774096 TGGTGGACAAGGGGAATCCA 60.774 55.000 0.09 0.00 40.27 3.41
1248 1269 0.407918 GGTGGACAAGGGGAATCCAA 59.592 55.000 0.09 0.00 44.05 3.53
1249 1270 1.545841 GTGGACAAGGGGAATCCAAC 58.454 55.000 0.09 0.00 44.05 3.77
1250 1271 1.075536 GTGGACAAGGGGAATCCAACT 59.924 52.381 0.09 0.00 44.05 3.16
1251 1272 1.075374 TGGACAAGGGGAATCCAACTG 59.925 52.381 0.09 0.00 39.60 3.16
1252 1273 1.075536 GGACAAGGGGAATCCAACTGT 59.924 52.381 0.09 0.00 38.24 3.55
1253 1274 2.490902 GGACAAGGGGAATCCAACTGTT 60.491 50.000 0.09 0.00 38.24 3.16
1254 1275 3.230976 GACAAGGGGAATCCAACTGTTT 58.769 45.455 0.09 0.00 38.24 2.83
1255 1276 4.403734 GACAAGGGGAATCCAACTGTTTA 58.596 43.478 0.09 0.00 38.24 2.01
1256 1277 4.810345 ACAAGGGGAATCCAACTGTTTAA 58.190 39.130 0.09 0.00 38.24 1.52
1257 1278 5.402630 ACAAGGGGAATCCAACTGTTTAAT 58.597 37.500 0.09 0.00 38.24 1.40
1258 1279 5.843969 ACAAGGGGAATCCAACTGTTTAATT 59.156 36.000 0.09 0.00 38.24 1.40
1259 1280 7.013834 ACAAGGGGAATCCAACTGTTTAATTA 58.986 34.615 0.09 0.00 38.24 1.40
1260 1281 7.511028 ACAAGGGGAATCCAACTGTTTAATTAA 59.489 33.333 0.09 0.00 38.24 1.40
1261 1282 8.371699 CAAGGGGAATCCAACTGTTTAATTAAA 58.628 33.333 6.54 6.54 38.24 1.52
1262 1283 8.499288 AGGGGAATCCAACTGTTTAATTAAAA 57.501 30.769 12.14 3.13 38.24 1.52
1263 1284 8.372459 AGGGGAATCCAACTGTTTAATTAAAAC 58.628 33.333 12.14 7.65 42.09 2.43
1264 1285 8.151596 GGGGAATCCAACTGTTTAATTAAAACA 58.848 33.333 12.14 11.24 44.08 2.83
1279 1300 9.717942 TTAATTAAAACAAAGCATTGCTATGGT 57.282 25.926 12.39 7.03 44.03 3.55
1280 1301 7.832503 ATTAAAACAAAGCATTGCTATGGTC 57.167 32.000 12.39 0.00 41.44 4.02
1281 1302 3.874392 AACAAAGCATTGCTATGGTCC 57.126 42.857 12.39 0.00 41.44 4.46
1282 1303 3.091633 ACAAAGCATTGCTATGGTCCT 57.908 42.857 12.39 1.68 41.44 3.85
1283 1304 3.434309 ACAAAGCATTGCTATGGTCCTT 58.566 40.909 12.39 2.70 41.44 3.36
1284 1305 3.194116 ACAAAGCATTGCTATGGTCCTTG 59.806 43.478 12.39 15.67 41.44 3.61
1285 1306 1.396653 AGCATTGCTATGGTCCTTGC 58.603 50.000 10.00 0.00 38.00 4.01
1286 1307 0.029834 GCATTGCTATGGTCCTTGCG 59.970 55.000 10.18 0.00 32.15 4.85
1287 1308 0.664761 CATTGCTATGGTCCTTGCGG 59.335 55.000 0.00 0.00 0.00 5.69
1288 1309 0.546122 ATTGCTATGGTCCTTGCGGA 59.454 50.000 0.00 0.00 36.83 5.54
1289 1310 0.546122 TTGCTATGGTCCTTGCGGAT 59.454 50.000 0.00 0.00 42.43 4.18
1290 1311 0.179048 TGCTATGGTCCTTGCGGATG 60.179 55.000 0.00 0.00 42.43 3.51
1291 1312 1.510480 GCTATGGTCCTTGCGGATGC 61.510 60.000 0.00 0.00 42.43 3.91
1292 1313 0.107456 CTATGGTCCTTGCGGATGCT 59.893 55.000 0.00 0.00 42.43 3.79
1293 1314 0.179048 TATGGTCCTTGCGGATGCTG 60.179 55.000 0.00 0.00 42.43 4.41
1294 1315 1.913951 ATGGTCCTTGCGGATGCTGA 61.914 55.000 0.00 0.00 42.43 4.26
1295 1316 1.153086 GGTCCTTGCGGATGCTGAT 60.153 57.895 0.00 0.00 42.43 2.90
1296 1317 0.106708 GGTCCTTGCGGATGCTGATA 59.893 55.000 0.00 0.00 42.43 2.15
1297 1318 1.221414 GTCCTTGCGGATGCTGATAC 58.779 55.000 0.00 0.00 42.43 2.24
1298 1319 0.829990 TCCTTGCGGATGCTGATACA 59.170 50.000 0.00 0.00 43.34 2.29
1299 1320 1.209261 TCCTTGCGGATGCTGATACAA 59.791 47.619 0.00 0.00 43.34 2.41
1300 1321 2.158769 TCCTTGCGGATGCTGATACAAT 60.159 45.455 0.00 0.00 43.34 2.71
1301 1322 2.031420 CCTTGCGGATGCTGATACAATG 60.031 50.000 0.00 0.00 43.34 2.82
1302 1323 2.330440 TGCGGATGCTGATACAATGT 57.670 45.000 0.00 0.00 43.34 2.71
1303 1324 1.941975 TGCGGATGCTGATACAATGTG 59.058 47.619 0.00 0.00 43.34 3.21
1304 1325 2.212652 GCGGATGCTGATACAATGTGA 58.787 47.619 0.00 0.00 38.39 3.58
1305 1326 2.810274 GCGGATGCTGATACAATGTGAT 59.190 45.455 0.00 0.00 38.39 3.06
1306 1327 3.251729 GCGGATGCTGATACAATGTGATT 59.748 43.478 0.00 0.00 38.39 2.57
1307 1328 4.261322 GCGGATGCTGATACAATGTGATTT 60.261 41.667 0.00 0.00 38.39 2.17
1308 1329 5.446709 CGGATGCTGATACAATGTGATTTC 58.553 41.667 0.00 0.00 0.00 2.17
1309 1330 5.237996 CGGATGCTGATACAATGTGATTTCT 59.762 40.000 0.00 0.00 0.00 2.52
1310 1331 6.436261 GGATGCTGATACAATGTGATTTCTG 58.564 40.000 0.00 0.00 0.00 3.02
1311 1332 5.239359 TGCTGATACAATGTGATTTCTGC 57.761 39.130 0.00 4.60 0.00 4.26
1312 1333 4.096833 TGCTGATACAATGTGATTTCTGCC 59.903 41.667 0.00 0.00 0.00 4.85
1313 1334 4.498682 GCTGATACAATGTGATTTCTGCCC 60.499 45.833 0.00 0.00 0.00 5.36
1314 1335 4.598022 TGATACAATGTGATTTCTGCCCA 58.402 39.130 0.00 0.00 0.00 5.36
1315 1336 4.641541 TGATACAATGTGATTTCTGCCCAG 59.358 41.667 0.00 0.00 0.00 4.45
1316 1337 2.880443 ACAATGTGATTTCTGCCCAGT 58.120 42.857 0.00 0.00 0.00 4.00
1317 1338 2.559668 ACAATGTGATTTCTGCCCAGTG 59.440 45.455 0.00 0.00 0.00 3.66
1318 1339 1.180029 ATGTGATTTCTGCCCAGTGC 58.820 50.000 0.00 0.00 41.77 4.40
1319 1340 0.111061 TGTGATTTCTGCCCAGTGCT 59.889 50.000 0.00 0.00 42.00 4.40
1320 1341 1.251251 GTGATTTCTGCCCAGTGCTT 58.749 50.000 0.00 0.00 42.00 3.91
1321 1342 1.615392 GTGATTTCTGCCCAGTGCTTT 59.385 47.619 0.00 0.00 42.00 3.51
1322 1343 1.614903 TGATTTCTGCCCAGTGCTTTG 59.385 47.619 0.00 0.00 42.00 2.77
1323 1344 1.888512 GATTTCTGCCCAGTGCTTTGA 59.111 47.619 0.00 0.00 42.00 2.69
1324 1345 1.774110 TTTCTGCCCAGTGCTTTGAA 58.226 45.000 0.00 0.00 42.00 2.69
1325 1346 1.999648 TTCTGCCCAGTGCTTTGAAT 58.000 45.000 0.00 0.00 42.00 2.57
1326 1347 1.250328 TCTGCCCAGTGCTTTGAATG 58.750 50.000 0.00 0.00 42.00 2.67
1327 1348 0.963962 CTGCCCAGTGCTTTGAATGT 59.036 50.000 0.00 0.00 42.00 2.71
1328 1349 0.961019 TGCCCAGTGCTTTGAATGTC 59.039 50.000 0.00 0.00 42.00 3.06
1329 1350 0.961019 GCCCAGTGCTTTGAATGTCA 59.039 50.000 0.00 0.00 36.87 3.58
1330 1351 1.340889 GCCCAGTGCTTTGAATGTCAA 59.659 47.619 0.00 0.00 36.87 3.18
1331 1352 2.224018 GCCCAGTGCTTTGAATGTCAAA 60.224 45.455 3.57 3.57 43.37 2.69
1345 1366 9.650539 TTTGAATGTCAAAGTGAAGAAATTCAA 57.349 25.926 13.77 13.77 41.02 2.69
1346 1367 9.650539 TTGAATGTCAAAGTGAAGAAATTCAAA 57.349 25.926 14.88 3.59 32.71 2.69
1347 1368 9.304731 TGAATGTCAAAGTGAAGAAATTCAAAG 57.695 29.630 5.74 0.00 32.04 2.77
1348 1369 8.652810 AATGTCAAAGTGAAGAAATTCAAAGG 57.347 30.769 0.00 0.00 32.04 3.11
1349 1370 7.403312 TGTCAAAGTGAAGAAATTCAAAGGA 57.597 32.000 0.00 0.00 32.04 3.36
1350 1371 7.835822 TGTCAAAGTGAAGAAATTCAAAGGAA 58.164 30.769 0.00 0.00 37.45 3.36
1397 1418 2.561569 CGGCGAGGTTGAAATTATCCT 58.438 47.619 0.00 0.00 0.00 3.24
1403 1424 5.601662 CGAGGTTGAAATTATCCTCTGCTA 58.398 41.667 8.16 0.00 42.80 3.49
1440 2425 4.738998 TTGTCATGCCCCCTGCCG 62.739 66.667 0.00 0.00 40.16 5.69
1637 3892 1.068753 CAATGGCGGCGAGATCTCT 59.931 57.895 20.26 0.00 0.00 3.10
1781 4037 4.070009 GACAAGGTTTTGGTAATCGGAGT 58.930 43.478 0.00 0.00 38.66 3.85
1787 4043 4.083484 GGTTTTGGTAATCGGAGTCAGTTG 60.083 45.833 0.00 0.00 0.00 3.16
1959 4215 2.933287 TGGAGGACCATGGGCGTT 60.933 61.111 15.42 3.07 41.77 4.84
2103 4359 0.943673 CAGATCCAAACACGCACACA 59.056 50.000 0.00 0.00 0.00 3.72
2238 4494 1.033746 TCTCGACCACCCGGATGTAC 61.034 60.000 0.73 0.00 35.59 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 5.593502 ACCTTGAAGGAGTATAAGAGGTACG 59.406 44.000 19.83 0.00 37.67 3.67
175 176 2.645802 GCCTTACGAGGAAGAGAGAGA 58.354 52.381 0.00 0.00 46.74 3.10
183 184 0.830648 CCTGATGGCCTTACGAGGAA 59.169 55.000 3.32 0.00 46.74 3.36
341 343 3.499338 AGTTCAATGTCATTGCTTGGGA 58.501 40.909 19.02 0.00 40.05 4.37
401 403 4.954970 CTTGGGTGGCGGCACAGT 62.955 66.667 38.28 0.00 0.00 3.55
412 414 1.340017 ACAGATGCGTAATGCTTGGGT 60.340 47.619 0.00 0.00 46.63 4.51
480 482 2.745492 GTGCACTGGCTGGCTCTC 60.745 66.667 10.32 0.00 41.91 3.20
493 495 4.883585 GGATGAACTCATAAAGGATGTGCA 59.116 41.667 0.00 0.00 36.57 4.57
542 544 5.338632 TGAAACTACATTGTAGGGAGGAGA 58.661 41.667 24.01 2.90 0.00 3.71
554 556 3.520290 TCGCGAGGATGAAACTACATT 57.480 42.857 3.71 0.00 0.00 2.71
558 560 3.194861 CCAATTCGCGAGGATGAAACTA 58.805 45.455 9.59 0.00 0.00 2.24
569 571 1.218047 CTGGAGGACCAATTCGCGA 59.782 57.895 3.71 3.71 46.32 5.87
642 646 1.079819 CTCACAGGACGTGCGGAAT 60.080 57.895 14.92 0.00 45.92 3.01
657 661 0.254178 GGAGGCAGGATCAAAGCTCA 59.746 55.000 0.00 0.00 0.00 4.26
761 777 2.023307 AGGAGGGAAGGAAGGAACGATA 60.023 50.000 0.00 0.00 0.00 2.92
766 782 0.698818 GCAAGGAGGGAAGGAAGGAA 59.301 55.000 0.00 0.00 0.00 3.36
770 786 0.772124 AGGTGCAAGGAGGGAAGGAA 60.772 55.000 0.00 0.00 0.00 3.36
841 857 3.374402 CTCTGGCCGTCGGTGAGT 61.374 66.667 13.94 0.00 0.00 3.41
868 886 1.093496 CACGTAAATTCTCCCCGGCC 61.093 60.000 0.00 0.00 0.00 6.13
879 897 0.390735 GTGCCGGAGTCCACGTAAAT 60.391 55.000 5.05 0.00 0.00 1.40
928 949 1.622232 GCGTGAACGGTACTAGTTCC 58.378 55.000 22.48 8.44 45.26 3.62
932 953 1.226491 CGGGCGTGAACGGTACTAG 60.226 63.158 4.84 0.00 40.23 2.57
933 954 2.699768 CCGGGCGTGAACGGTACTA 61.700 63.158 4.84 0.00 44.85 1.82
934 955 4.060038 CCGGGCGTGAACGGTACT 62.060 66.667 4.84 0.00 44.85 2.73
939 960 2.162754 GTATGACCGGGCGTGAACG 61.163 63.158 13.94 0.00 43.27 3.95
940 961 0.804933 GAGTATGACCGGGCGTGAAC 60.805 60.000 13.94 2.60 0.00 3.18
941 962 1.252215 TGAGTATGACCGGGCGTGAA 61.252 55.000 13.94 0.00 0.00 3.18
942 963 1.040893 ATGAGTATGACCGGGCGTGA 61.041 55.000 13.94 0.00 0.00 4.35
943 964 0.671796 TATGAGTATGACCGGGCGTG 59.328 55.000 13.94 0.00 0.00 5.34
944 965 1.068127 GTTATGAGTATGACCGGGCGT 59.932 52.381 7.48 7.48 0.00 5.68
945 966 1.604693 GGTTATGAGTATGACCGGGCG 60.605 57.143 6.32 0.00 33.83 6.13
946 967 2.165319 GGTTATGAGTATGACCGGGC 57.835 55.000 6.32 1.57 33.83 6.13
950 971 3.990092 TGATGCGGTTATGAGTATGACC 58.010 45.455 0.00 0.00 39.06 4.02
951 972 5.984233 TTTGATGCGGTTATGAGTATGAC 57.016 39.130 0.00 0.00 0.00 3.06
952 973 6.524734 AGATTTGATGCGGTTATGAGTATGA 58.475 36.000 0.00 0.00 0.00 2.15
953 974 6.128445 GGAGATTTGATGCGGTTATGAGTATG 60.128 42.308 0.00 0.00 0.00 2.39
954 975 5.934625 GGAGATTTGATGCGGTTATGAGTAT 59.065 40.000 0.00 0.00 0.00 2.12
955 976 5.163353 TGGAGATTTGATGCGGTTATGAGTA 60.163 40.000 0.00 0.00 0.00 2.59
956 977 4.130118 GGAGATTTGATGCGGTTATGAGT 58.870 43.478 0.00 0.00 0.00 3.41
957 978 4.129380 TGGAGATTTGATGCGGTTATGAG 58.871 43.478 0.00 0.00 0.00 2.90
958 979 4.149511 TGGAGATTTGATGCGGTTATGA 57.850 40.909 0.00 0.00 0.00 2.15
959 980 4.261322 CCTTGGAGATTTGATGCGGTTATG 60.261 45.833 0.00 0.00 0.00 1.90
960 981 3.885297 CCTTGGAGATTTGATGCGGTTAT 59.115 43.478 0.00 0.00 0.00 1.89
961 982 3.278574 CCTTGGAGATTTGATGCGGTTA 58.721 45.455 0.00 0.00 0.00 2.85
962 983 2.094675 CCTTGGAGATTTGATGCGGTT 58.905 47.619 0.00 0.00 0.00 4.44
963 984 1.004745 ACCTTGGAGATTTGATGCGGT 59.995 47.619 0.00 0.00 0.00 5.68
964 985 1.402968 CACCTTGGAGATTTGATGCGG 59.597 52.381 0.00 0.00 0.00 5.69
965 986 2.358957 TCACCTTGGAGATTTGATGCG 58.641 47.619 0.00 0.00 0.00 4.73
966 987 3.507233 TGTTCACCTTGGAGATTTGATGC 59.493 43.478 0.00 0.00 0.00 3.91
967 988 4.082571 GGTGTTCACCTTGGAGATTTGATG 60.083 45.833 13.97 0.00 0.00 3.07
968 989 4.082125 GGTGTTCACCTTGGAGATTTGAT 58.918 43.478 13.97 0.00 0.00 2.57
969 990 3.486383 GGTGTTCACCTTGGAGATTTGA 58.514 45.455 13.97 0.00 0.00 2.69
970 991 2.558359 GGGTGTTCACCTTGGAGATTTG 59.442 50.000 19.42 0.00 0.00 2.32
971 992 2.447047 AGGGTGTTCACCTTGGAGATTT 59.553 45.455 19.42 0.00 33.64 2.17
972 993 2.040412 GAGGGTGTTCACCTTGGAGATT 59.960 50.000 19.42 0.00 38.79 2.40
973 994 1.630878 GAGGGTGTTCACCTTGGAGAT 59.369 52.381 19.42 0.65 38.79 2.75
974 995 1.056660 GAGGGTGTTCACCTTGGAGA 58.943 55.000 19.42 0.00 38.79 3.71
975 996 1.059913 AGAGGGTGTTCACCTTGGAG 58.940 55.000 19.42 0.00 38.79 3.86
976 997 0.764890 CAGAGGGTGTTCACCTTGGA 59.235 55.000 19.42 0.00 38.79 3.53
977 998 0.764890 TCAGAGGGTGTTCACCTTGG 59.235 55.000 19.42 8.48 38.79 3.61
978 999 1.543429 GGTCAGAGGGTGTTCACCTTG 60.543 57.143 19.42 15.15 38.79 3.61
979 1000 0.765510 GGTCAGAGGGTGTTCACCTT 59.234 55.000 19.42 13.46 38.79 3.50
980 1001 0.399949 TGGTCAGAGGGTGTTCACCT 60.400 55.000 19.42 7.59 42.18 4.00
981 1002 0.472471 TTGGTCAGAGGGTGTTCACC 59.528 55.000 12.99 12.99 0.00 4.02
982 1003 2.154462 CATTGGTCAGAGGGTGTTCAC 58.846 52.381 0.00 0.00 0.00 3.18
983 1004 2.054021 TCATTGGTCAGAGGGTGTTCA 58.946 47.619 0.00 0.00 0.00 3.18
984 1005 2.859165 TCATTGGTCAGAGGGTGTTC 57.141 50.000 0.00 0.00 0.00 3.18
985 1006 3.222603 GTTTCATTGGTCAGAGGGTGTT 58.777 45.455 0.00 0.00 0.00 3.32
986 1007 2.174639 TGTTTCATTGGTCAGAGGGTGT 59.825 45.455 0.00 0.00 0.00 4.16
987 1008 2.862541 TGTTTCATTGGTCAGAGGGTG 58.137 47.619 0.00 0.00 0.00 4.61
988 1009 3.593442 TTGTTTCATTGGTCAGAGGGT 57.407 42.857 0.00 0.00 0.00 4.34
989 1010 3.828451 ACATTGTTTCATTGGTCAGAGGG 59.172 43.478 0.00 0.00 0.00 4.30
990 1011 5.124457 CCTACATTGTTTCATTGGTCAGAGG 59.876 44.000 0.00 0.00 0.00 3.69
991 1012 5.392380 GCCTACATTGTTTCATTGGTCAGAG 60.392 44.000 0.00 0.00 0.00 3.35
992 1013 4.458989 GCCTACATTGTTTCATTGGTCAGA 59.541 41.667 0.00 0.00 0.00 3.27
993 1014 4.218200 TGCCTACATTGTTTCATTGGTCAG 59.782 41.667 0.00 0.00 0.00 3.51
994 1015 4.148079 TGCCTACATTGTTTCATTGGTCA 58.852 39.130 0.00 0.00 0.00 4.02
995 1016 4.782019 TGCCTACATTGTTTCATTGGTC 57.218 40.909 0.00 0.00 0.00 4.02
996 1017 4.021192 CCTTGCCTACATTGTTTCATTGGT 60.021 41.667 0.00 0.00 0.00 3.67
997 1018 4.497300 CCTTGCCTACATTGTTTCATTGG 58.503 43.478 0.00 0.00 0.00 3.16
998 1019 4.220382 TCCCTTGCCTACATTGTTTCATTG 59.780 41.667 0.00 0.00 0.00 2.82
999 1020 4.415596 TCCCTTGCCTACATTGTTTCATT 58.584 39.130 0.00 0.00 0.00 2.57
1000 1021 4.046286 TCCCTTGCCTACATTGTTTCAT 57.954 40.909 0.00 0.00 0.00 2.57
1001 1022 3.517296 TCCCTTGCCTACATTGTTTCA 57.483 42.857 0.00 0.00 0.00 2.69
1002 1023 3.826729 ACTTCCCTTGCCTACATTGTTTC 59.173 43.478 0.00 0.00 0.00 2.78
1003 1024 3.826729 GACTTCCCTTGCCTACATTGTTT 59.173 43.478 0.00 0.00 0.00 2.83
1004 1025 3.421844 GACTTCCCTTGCCTACATTGTT 58.578 45.455 0.00 0.00 0.00 2.83
1005 1026 2.615493 CGACTTCCCTTGCCTACATTGT 60.615 50.000 0.00 0.00 0.00 2.71
1006 1027 2.009774 CGACTTCCCTTGCCTACATTG 58.990 52.381 0.00 0.00 0.00 2.82
1007 1028 1.065418 CCGACTTCCCTTGCCTACATT 60.065 52.381 0.00 0.00 0.00 2.71
1008 1029 0.541863 CCGACTTCCCTTGCCTACAT 59.458 55.000 0.00 0.00 0.00 2.29
1009 1030 1.980052 CCGACTTCCCTTGCCTACA 59.020 57.895 0.00 0.00 0.00 2.74
1010 1031 1.449778 GCCGACTTCCCTTGCCTAC 60.450 63.158 0.00 0.00 0.00 3.18
1011 1032 1.485294 TTGCCGACTTCCCTTGCCTA 61.485 55.000 0.00 0.00 0.00 3.93
1012 1033 2.351924 TTTGCCGACTTCCCTTGCCT 62.352 55.000 0.00 0.00 0.00 4.75
1013 1034 1.460273 TTTTGCCGACTTCCCTTGCC 61.460 55.000 0.00 0.00 0.00 4.52
1014 1035 0.318699 GTTTTGCCGACTTCCCTTGC 60.319 55.000 0.00 0.00 0.00 4.01
1015 1036 0.040425 CGTTTTGCCGACTTCCCTTG 60.040 55.000 0.00 0.00 0.00 3.61
1016 1037 1.170290 CCGTTTTGCCGACTTCCCTT 61.170 55.000 0.00 0.00 0.00 3.95
1017 1038 1.599797 CCGTTTTGCCGACTTCCCT 60.600 57.895 0.00 0.00 0.00 4.20
1018 1039 0.958876 ATCCGTTTTGCCGACTTCCC 60.959 55.000 0.00 0.00 0.00 3.97
1019 1040 0.446616 GATCCGTTTTGCCGACTTCC 59.553 55.000 0.00 0.00 0.00 3.46
1020 1041 0.446616 GGATCCGTTTTGCCGACTTC 59.553 55.000 0.00 0.00 0.00 3.01
1021 1042 1.296056 CGGATCCGTTTTGCCGACTT 61.296 55.000 26.35 0.00 46.29 3.01
1022 1043 1.740296 CGGATCCGTTTTGCCGACT 60.740 57.895 26.35 0.00 46.29 4.18
1023 1044 2.782615 CGGATCCGTTTTGCCGAC 59.217 61.111 26.35 0.00 46.29 4.79
1039 1060 4.658071 CCAATCATTTTCCCGAAGTTACG 58.342 43.478 0.00 0.00 0.00 3.18
1040 1061 4.157840 AGCCAATCATTTTCCCGAAGTTAC 59.842 41.667 0.00 0.00 0.00 2.50
1041 1062 4.340617 AGCCAATCATTTTCCCGAAGTTA 58.659 39.130 0.00 0.00 0.00 2.24
1042 1063 3.165071 AGCCAATCATTTTCCCGAAGTT 58.835 40.909 0.00 0.00 0.00 2.66
1043 1064 2.755103 GAGCCAATCATTTTCCCGAAGT 59.245 45.455 0.00 0.00 0.00 3.01
1044 1065 3.019564 AGAGCCAATCATTTTCCCGAAG 58.980 45.455 0.00 0.00 0.00 3.79
1045 1066 2.754552 CAGAGCCAATCATTTTCCCGAA 59.245 45.455 0.00 0.00 0.00 4.30
1046 1067 2.026356 TCAGAGCCAATCATTTTCCCGA 60.026 45.455 0.00 0.00 0.00 5.14
1047 1068 2.357009 CTCAGAGCCAATCATTTTCCCG 59.643 50.000 0.00 0.00 0.00 5.14
1048 1069 2.692041 CCTCAGAGCCAATCATTTTCCC 59.308 50.000 0.00 0.00 0.00 3.97
1049 1070 3.379688 GTCCTCAGAGCCAATCATTTTCC 59.620 47.826 0.00 0.00 0.00 3.13
1050 1071 4.096081 CAGTCCTCAGAGCCAATCATTTTC 59.904 45.833 0.00 0.00 0.00 2.29
1051 1072 4.015084 CAGTCCTCAGAGCCAATCATTTT 58.985 43.478 0.00 0.00 0.00 1.82
1052 1073 3.618351 CAGTCCTCAGAGCCAATCATTT 58.382 45.455 0.00 0.00 0.00 2.32
1053 1074 2.092538 CCAGTCCTCAGAGCCAATCATT 60.093 50.000 0.00 0.00 0.00 2.57
1054 1075 1.489649 CCAGTCCTCAGAGCCAATCAT 59.510 52.381 0.00 0.00 0.00 2.45
1055 1076 0.907486 CCAGTCCTCAGAGCCAATCA 59.093 55.000 0.00 0.00 0.00 2.57
1056 1077 0.179936 CCCAGTCCTCAGAGCCAATC 59.820 60.000 0.00 0.00 0.00 2.67
1057 1078 1.919600 GCCCAGTCCTCAGAGCCAAT 61.920 60.000 0.00 0.00 0.00 3.16
1058 1079 2.596851 GCCCAGTCCTCAGAGCCAA 61.597 63.158 0.00 0.00 0.00 4.52
1059 1080 3.005539 GCCCAGTCCTCAGAGCCA 61.006 66.667 0.00 0.00 0.00 4.75
1060 1081 2.686835 AGCCCAGTCCTCAGAGCC 60.687 66.667 0.00 0.00 0.00 4.70
1061 1082 2.899505 GAGCCCAGTCCTCAGAGC 59.100 66.667 0.00 0.00 0.00 4.09
1062 1083 2.422231 CCGAGCCCAGTCCTCAGAG 61.422 68.421 0.00 0.00 0.00 3.35
1063 1084 2.363018 CCGAGCCCAGTCCTCAGA 60.363 66.667 0.00 0.00 0.00 3.27
1064 1085 3.465403 CCCGAGCCCAGTCCTCAG 61.465 72.222 0.00 0.00 0.00 3.35
1091 1112 4.636435 ACAGCCAACGGGTTCGGG 62.636 66.667 0.00 0.00 41.39 5.14
1092 1113 3.047877 GACAGCCAACGGGTTCGG 61.048 66.667 0.00 0.00 41.39 4.30
1093 1114 3.411351 CGACAGCCAACGGGTTCG 61.411 66.667 0.00 0.00 43.02 3.95
1094 1115 3.047877 CCGACAGCCAACGGGTTC 61.048 66.667 0.00 0.00 44.59 3.62
1100 1121 2.746277 AATCCGCCGACAGCCAAC 60.746 61.111 0.00 0.00 38.78 3.77
1101 1122 2.745884 CAATCCGCCGACAGCCAA 60.746 61.111 0.00 0.00 38.78 4.52
1104 1125 3.567797 GAGCAATCCGCCGACAGC 61.568 66.667 0.00 0.00 44.04 4.40
1105 1126 3.257561 CGAGCAATCCGCCGACAG 61.258 66.667 0.00 0.00 44.04 3.51
1106 1127 3.699955 CTCGAGCAATCCGCCGACA 62.700 63.158 0.00 0.00 44.04 4.35
1107 1128 2.956964 CTCGAGCAATCCGCCGAC 60.957 66.667 0.00 0.00 44.04 4.79
1108 1129 4.873129 GCTCGAGCAATCCGCCGA 62.873 66.667 31.91 0.00 44.04 5.54
1109 1130 4.880537 AGCTCGAGCAATCCGCCG 62.881 66.667 36.87 0.00 45.16 6.46
1110 1131 3.267860 CAGCTCGAGCAATCCGCC 61.268 66.667 36.87 7.25 45.16 6.13
1111 1132 3.934684 GCAGCTCGAGCAATCCGC 61.935 66.667 36.87 25.36 45.16 5.54
1112 1133 2.202851 AGCAGCTCGAGCAATCCG 60.203 61.111 36.87 20.45 45.16 4.18
1113 1134 1.153489 TGAGCAGCTCGAGCAATCC 60.153 57.895 36.87 22.86 45.16 3.01
1114 1135 1.750572 CGTGAGCAGCTCGAGCAATC 61.751 60.000 36.87 28.62 45.16 2.67
1115 1136 1.808799 CGTGAGCAGCTCGAGCAAT 60.809 57.895 36.87 22.74 45.16 3.56
1116 1137 2.431430 CGTGAGCAGCTCGAGCAA 60.431 61.111 36.87 15.40 45.16 3.91
1163 1184 2.847715 ATTCCCGATCCGTCCCCC 60.848 66.667 0.00 0.00 0.00 5.40
1164 1185 2.741747 GATTCCCGATCCGTCCCC 59.258 66.667 0.00 0.00 0.00 4.81
1165 1186 2.338984 CGATTCCCGATCCGTCCC 59.661 66.667 0.00 0.00 41.76 4.46
1166 1187 2.355956 GCGATTCCCGATCCGTCC 60.356 66.667 0.00 0.00 41.76 4.79
1167 1188 2.355956 GGCGATTCCCGATCCGTC 60.356 66.667 0.00 0.00 41.76 4.79
1193 1214 2.830370 CCATGCTCGGGGAAAGCC 60.830 66.667 0.00 0.00 39.05 4.35
1194 1215 1.378514 TTCCATGCTCGGGGAAAGC 60.379 57.895 0.00 0.00 40.11 3.51
1195 1216 0.322456 TGTTCCATGCTCGGGGAAAG 60.322 55.000 0.00 0.00 44.30 2.62
1196 1217 0.322456 CTGTTCCATGCTCGGGGAAA 60.322 55.000 0.00 0.00 44.30 3.13
1197 1218 1.299648 CTGTTCCATGCTCGGGGAA 59.700 57.895 0.00 0.00 40.75 3.97
1198 1219 1.899437 GACTGTTCCATGCTCGGGGA 61.899 60.000 0.00 0.00 0.00 4.81
1199 1220 1.450312 GACTGTTCCATGCTCGGGG 60.450 63.158 0.00 0.00 0.00 5.73
1200 1221 1.811266 CGACTGTTCCATGCTCGGG 60.811 63.158 0.00 0.00 0.00 5.14
1201 1222 1.078759 GTCGACTGTTCCATGCTCGG 61.079 60.000 8.70 0.00 0.00 4.63
1202 1223 0.109086 AGTCGACTGTTCCATGCTCG 60.109 55.000 19.30 0.00 0.00 5.03
1203 1224 1.067565 TGAGTCGACTGTTCCATGCTC 60.068 52.381 25.58 4.91 0.00 4.26
1204 1225 0.969149 TGAGTCGACTGTTCCATGCT 59.031 50.000 25.58 0.00 0.00 3.79
1205 1226 1.795768 TTGAGTCGACTGTTCCATGC 58.204 50.000 25.58 6.22 0.00 4.06
1206 1227 3.809832 AGTTTTGAGTCGACTGTTCCATG 59.190 43.478 25.58 0.00 0.00 3.66
1207 1228 3.809832 CAGTTTTGAGTCGACTGTTCCAT 59.190 43.478 25.58 1.65 36.81 3.41
1208 1229 3.194861 CAGTTTTGAGTCGACTGTTCCA 58.805 45.455 25.58 11.97 36.81 3.53
1209 1230 2.544267 CCAGTTTTGAGTCGACTGTTCC 59.456 50.000 25.58 9.08 39.23 3.62
1210 1231 3.001330 CACCAGTTTTGAGTCGACTGTTC 59.999 47.826 25.58 9.76 39.23 3.18
1211 1232 2.936498 CACCAGTTTTGAGTCGACTGTT 59.064 45.455 25.58 0.00 39.23 3.16
1212 1233 2.550978 CACCAGTTTTGAGTCGACTGT 58.449 47.619 25.58 9.05 39.23 3.55
1213 1234 1.867233 CCACCAGTTTTGAGTCGACTG 59.133 52.381 25.58 8.33 40.27 3.51
1214 1235 1.760613 TCCACCAGTTTTGAGTCGACT 59.239 47.619 20.18 20.18 0.00 4.18
1215 1236 1.865340 GTCCACCAGTTTTGAGTCGAC 59.135 52.381 7.70 7.70 0.00 4.20
1216 1237 1.483004 TGTCCACCAGTTTTGAGTCGA 59.517 47.619 0.00 0.00 0.00 4.20
1217 1238 1.948104 TGTCCACCAGTTTTGAGTCG 58.052 50.000 0.00 0.00 0.00 4.18
1218 1239 2.618709 CCTTGTCCACCAGTTTTGAGTC 59.381 50.000 0.00 0.00 0.00 3.36
1219 1240 2.654863 CCTTGTCCACCAGTTTTGAGT 58.345 47.619 0.00 0.00 0.00 3.41
1220 1241 1.956477 CCCTTGTCCACCAGTTTTGAG 59.044 52.381 0.00 0.00 0.00 3.02
1221 1242 1.410932 CCCCTTGTCCACCAGTTTTGA 60.411 52.381 0.00 0.00 0.00 2.69
1222 1243 1.039856 CCCCTTGTCCACCAGTTTTG 58.960 55.000 0.00 0.00 0.00 2.44
1223 1244 0.930726 TCCCCTTGTCCACCAGTTTT 59.069 50.000 0.00 0.00 0.00 2.43
1224 1245 0.930726 TTCCCCTTGTCCACCAGTTT 59.069 50.000 0.00 0.00 0.00 2.66
1225 1246 1.075536 GATTCCCCTTGTCCACCAGTT 59.924 52.381 0.00 0.00 0.00 3.16
1226 1247 0.698818 GATTCCCCTTGTCCACCAGT 59.301 55.000 0.00 0.00 0.00 4.00
1227 1248 0.034089 GGATTCCCCTTGTCCACCAG 60.034 60.000 0.00 0.00 32.23 4.00
1228 1249 0.774096 TGGATTCCCCTTGTCCACCA 60.774 55.000 0.00 0.00 37.12 4.17
1229 1250 0.407918 TTGGATTCCCCTTGTCCACC 59.592 55.000 0.00 0.00 41.48 4.61
1230 1251 1.075536 AGTTGGATTCCCCTTGTCCAC 59.924 52.381 0.00 0.00 41.48 4.02
1231 1252 1.075374 CAGTTGGATTCCCCTTGTCCA 59.925 52.381 0.00 0.00 40.13 4.02
1232 1253 1.075536 ACAGTTGGATTCCCCTTGTCC 59.924 52.381 0.00 0.00 35.38 4.02
1233 1254 2.586648 ACAGTTGGATTCCCCTTGTC 57.413 50.000 0.00 0.00 35.38 3.18
1234 1255 3.328535 AAACAGTTGGATTCCCCTTGT 57.671 42.857 0.00 0.00 35.38 3.16
1235 1256 6.358974 AATTAAACAGTTGGATTCCCCTTG 57.641 37.500 0.00 0.00 35.38 3.61
1236 1257 8.499288 TTTAATTAAACAGTTGGATTCCCCTT 57.501 30.769 6.54 0.00 35.38 3.95
1237 1258 8.372459 GTTTTAATTAAACAGTTGGATTCCCCT 58.628 33.333 10.18 0.00 44.49 4.79
1238 1259 8.542497 GTTTTAATTAAACAGTTGGATTCCCC 57.458 34.615 10.18 0.00 44.49 4.81
1253 1274 9.717942 ACCATAGCAATGCTTTGTTTTAATTAA 57.282 25.926 20.87 0.00 40.44 1.40
1254 1275 9.364989 GACCATAGCAATGCTTTGTTTTAATTA 57.635 29.630 20.87 0.00 40.44 1.40
1255 1276 7.334171 GGACCATAGCAATGCTTTGTTTTAATT 59.666 33.333 20.87 0.69 40.44 1.40
1256 1277 6.818142 GGACCATAGCAATGCTTTGTTTTAAT 59.182 34.615 20.87 1.41 40.44 1.40
1257 1278 6.014669 AGGACCATAGCAATGCTTTGTTTTAA 60.015 34.615 20.87 0.00 40.44 1.52
1258 1279 5.480073 AGGACCATAGCAATGCTTTGTTTTA 59.520 36.000 20.87 0.00 40.44 1.52
1259 1280 4.284234 AGGACCATAGCAATGCTTTGTTTT 59.716 37.500 20.87 7.85 40.44 2.43
1260 1281 3.834231 AGGACCATAGCAATGCTTTGTTT 59.166 39.130 20.87 10.01 40.44 2.83
1261 1282 3.434309 AGGACCATAGCAATGCTTTGTT 58.566 40.909 20.87 9.87 40.44 2.83
1262 1283 3.091633 AGGACCATAGCAATGCTTTGT 57.908 42.857 20.87 12.87 40.44 2.83
1263 1284 3.777478 CAAGGACCATAGCAATGCTTTG 58.223 45.455 14.85 16.09 40.44 2.77
1264 1285 2.167075 GCAAGGACCATAGCAATGCTTT 59.833 45.455 14.85 1.72 40.44 3.51
1265 1286 1.753073 GCAAGGACCATAGCAATGCTT 59.247 47.619 14.85 0.00 40.44 3.91
1266 1287 1.396653 GCAAGGACCATAGCAATGCT 58.603 50.000 13.92 13.92 43.41 3.79
1267 1288 0.029834 CGCAAGGACCATAGCAATGC 59.970 55.000 0.00 0.00 0.00 3.56
1281 1302 2.615447 ACATTGTATCAGCATCCGCAAG 59.385 45.455 0.00 0.00 42.27 4.01
1282 1303 2.355444 CACATTGTATCAGCATCCGCAA 59.645 45.455 0.00 0.00 42.27 4.85
1283 1304 1.941975 CACATTGTATCAGCATCCGCA 59.058 47.619 0.00 0.00 42.27 5.69
1284 1305 2.212652 TCACATTGTATCAGCATCCGC 58.787 47.619 0.00 0.00 38.99 5.54
1285 1306 5.237996 AGAAATCACATTGTATCAGCATCCG 59.762 40.000 0.00 0.00 0.00 4.18
1286 1307 6.436261 CAGAAATCACATTGTATCAGCATCC 58.564 40.000 0.00 0.00 0.00 3.51
1287 1308 5.913514 GCAGAAATCACATTGTATCAGCATC 59.086 40.000 0.00 0.00 0.00 3.91
1288 1309 5.221185 GGCAGAAATCACATTGTATCAGCAT 60.221 40.000 0.00 0.00 0.00 3.79
1289 1310 4.096833 GGCAGAAATCACATTGTATCAGCA 59.903 41.667 0.00 0.00 0.00 4.41
1290 1311 4.498682 GGGCAGAAATCACATTGTATCAGC 60.499 45.833 0.00 0.00 0.00 4.26
1291 1312 4.641541 TGGGCAGAAATCACATTGTATCAG 59.358 41.667 0.00 0.00 0.00 2.90
1292 1313 4.598022 TGGGCAGAAATCACATTGTATCA 58.402 39.130 0.00 0.00 0.00 2.15
1293 1314 4.641989 ACTGGGCAGAAATCACATTGTATC 59.358 41.667 0.00 0.00 0.00 2.24
1294 1315 4.400251 CACTGGGCAGAAATCACATTGTAT 59.600 41.667 0.00 0.00 0.00 2.29
1295 1316 3.758023 CACTGGGCAGAAATCACATTGTA 59.242 43.478 0.00 0.00 0.00 2.41
1296 1317 2.559668 CACTGGGCAGAAATCACATTGT 59.440 45.455 0.00 0.00 0.00 2.71
1297 1318 2.673043 GCACTGGGCAGAAATCACATTG 60.673 50.000 0.00 0.00 43.97 2.82
1298 1319 1.547372 GCACTGGGCAGAAATCACATT 59.453 47.619 0.00 0.00 43.97 2.71
1299 1320 1.180029 GCACTGGGCAGAAATCACAT 58.820 50.000 0.00 0.00 43.97 3.21
1300 1321 2.644887 GCACTGGGCAGAAATCACA 58.355 52.632 0.00 0.00 43.97 3.58
1308 1329 5.110410 TTGACATTCAAAGCACTGGGCAG 62.110 47.826 4.01 0.00 36.79 4.85
1309 1330 3.276186 TTGACATTCAAAGCACTGGGCA 61.276 45.455 4.01 0.00 36.79 5.36
1310 1331 0.961019 TGACATTCAAAGCACTGGGC 59.039 50.000 0.00 0.00 45.30 5.36
1311 1332 3.731652 TTTGACATTCAAAGCACTGGG 57.268 42.857 0.00 0.00 41.02 4.45
1319 1340 9.650539 TTGAATTTCTTCACTTTGACATTCAAA 57.349 25.926 12.08 1.60 41.88 2.69
1320 1341 9.650539 TTTGAATTTCTTCACTTTGACATTCAA 57.349 25.926 11.02 11.02 42.50 2.69
1321 1342 9.304731 CTTTGAATTTCTTCACTTTGACATTCA 57.695 29.630 0.00 0.00 41.05 2.57
1322 1343 8.758715 CCTTTGAATTTCTTCACTTTGACATTC 58.241 33.333 0.00 0.00 41.05 2.67
1323 1344 8.477256 TCCTTTGAATTTCTTCACTTTGACATT 58.523 29.630 0.00 0.00 41.05 2.71
1324 1345 8.010733 TCCTTTGAATTTCTTCACTTTGACAT 57.989 30.769 0.00 0.00 41.05 3.06
1325 1346 7.403312 TCCTTTGAATTTCTTCACTTTGACA 57.597 32.000 0.00 0.00 41.05 3.58
1326 1347 8.190784 TCTTCCTTTGAATTTCTTCACTTTGAC 58.809 33.333 0.00 0.00 41.05 3.18
1327 1348 8.292444 TCTTCCTTTGAATTTCTTCACTTTGA 57.708 30.769 0.00 0.00 41.05 2.69
1328 1349 7.650903 CCTCTTCCTTTGAATTTCTTCACTTTG 59.349 37.037 0.00 0.00 41.05 2.77
1329 1350 7.201947 CCCTCTTCCTTTGAATTTCTTCACTTT 60.202 37.037 0.00 0.00 41.05 2.66
1330 1351 6.266330 CCCTCTTCCTTTGAATTTCTTCACTT 59.734 38.462 0.00 0.00 41.05 3.16
1331 1352 5.772169 CCCTCTTCCTTTGAATTTCTTCACT 59.228 40.000 0.00 0.00 41.05 3.41
1332 1353 5.536538 ACCCTCTTCCTTTGAATTTCTTCAC 59.463 40.000 0.00 0.00 41.05 3.18
1333 1354 5.705400 ACCCTCTTCCTTTGAATTTCTTCA 58.295 37.500 0.00 0.00 39.62 3.02
1334 1355 6.656632 AACCCTCTTCCTTTGAATTTCTTC 57.343 37.500 0.00 0.00 0.00 2.87
1335 1356 6.183361 CCAAACCCTCTTCCTTTGAATTTCTT 60.183 38.462 0.00 0.00 0.00 2.52
1336 1357 5.305386 CCAAACCCTCTTCCTTTGAATTTCT 59.695 40.000 0.00 0.00 0.00 2.52
1337 1358 5.511373 CCCAAACCCTCTTCCTTTGAATTTC 60.511 44.000 0.00 0.00 0.00 2.17
1338 1359 4.347876 CCCAAACCCTCTTCCTTTGAATTT 59.652 41.667 0.00 0.00 0.00 1.82
1339 1360 3.903714 CCCAAACCCTCTTCCTTTGAATT 59.096 43.478 0.00 0.00 0.00 2.17
1340 1361 3.116746 ACCCAAACCCTCTTCCTTTGAAT 60.117 43.478 0.00 0.00 0.00 2.57
1341 1362 2.246327 ACCCAAACCCTCTTCCTTTGAA 59.754 45.455 0.00 0.00 0.00 2.69
1342 1363 1.856920 ACCCAAACCCTCTTCCTTTGA 59.143 47.619 0.00 0.00 0.00 2.69
1343 1364 2.381752 ACCCAAACCCTCTTCCTTTG 57.618 50.000 0.00 0.00 0.00 2.77
1344 1365 3.038280 CAAACCCAAACCCTCTTCCTTT 58.962 45.455 0.00 0.00 0.00 3.11
1345 1366 2.677914 CAAACCCAAACCCTCTTCCTT 58.322 47.619 0.00 0.00 0.00 3.36
1346 1367 1.133167 CCAAACCCAAACCCTCTTCCT 60.133 52.381 0.00 0.00 0.00 3.36
1347 1368 1.338107 CCAAACCCAAACCCTCTTCC 58.662 55.000 0.00 0.00 0.00 3.46
1348 1369 1.338107 CCCAAACCCAAACCCTCTTC 58.662 55.000 0.00 0.00 0.00 2.87
1349 1370 0.639943 ACCCAAACCCAAACCCTCTT 59.360 50.000 0.00 0.00 0.00 2.85
1350 1371 0.639943 AACCCAAACCCAAACCCTCT 59.360 50.000 0.00 0.00 0.00 3.69
1391 1412 2.042464 CTGGCCTGTAGCAGAGGATAA 58.958 52.381 3.32 0.00 46.50 1.75
1393 1414 0.031716 TCTGGCCTGTAGCAGAGGAT 60.032 55.000 3.32 0.00 46.50 3.24
1394 1415 0.031716 ATCTGGCCTGTAGCAGAGGA 60.032 55.000 3.32 0.00 46.50 3.71
1395 1416 0.392336 GATCTGGCCTGTAGCAGAGG 59.608 60.000 3.32 0.00 46.50 3.69
1397 1418 1.395045 CGGATCTGGCCTGTAGCAGA 61.395 60.000 3.32 0.00 46.50 4.26
1421 1449 3.790223 GCAGGGGGCATGACAAAA 58.210 55.556 0.00 0.00 43.97 2.44
1440 2425 0.040958 CTTGACTGCGTTTGGTGAGC 60.041 55.000 0.00 0.00 0.00 4.26
1520 3775 3.262660 CGACCTTACCCTTCTTTTACCCT 59.737 47.826 0.00 0.00 0.00 4.34
1781 4037 0.603707 CGAGCTTTCTGCCCAACTGA 60.604 55.000 0.00 0.00 44.23 3.41
1787 4043 2.747855 CCACCGAGCTTTCTGCCC 60.748 66.667 0.00 0.00 44.23 5.36
2103 4359 2.806945 TCCAAAATGCCTCCGAGAAT 57.193 45.000 0.00 0.00 0.00 2.40
2238 4494 3.683802 AGCAAATTCCAGGTTGAGAGAG 58.316 45.455 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.