Multiple sequence alignment - TraesCS7A01G268300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G268300 chr7A 100.000 2789 0 0 1 2789 271728709 271731497 0.000000e+00 5151.0
1 TraesCS7A01G268300 chr7A 77.364 349 70 7 1067 1412 62838400 62838742 6.090000e-47 198.0
2 TraesCS7A01G268300 chr7A 88.000 50 5 1 1936 1985 62731810 62731762 1.080000e-04 58.4
3 TraesCS7A01G268300 chr7B 94.323 1973 83 10 836 2789 226438595 226436633 0.000000e+00 2996.0
4 TraesCS7A01G268300 chr7B 85.098 765 38 22 12 732 226439333 226438601 0.000000e+00 712.0
5 TraesCS7A01G268300 chr7B 89.103 156 16 1 2201 2355 155471322 155471167 2.830000e-45 193.0
6 TraesCS7A01G268300 chr7B 86.667 105 14 0 727 831 272975826 272975930 1.760000e-22 117.0
7 TraesCS7A01G268300 chr7D 94.513 1294 41 9 827 2113 249430852 249429582 0.000000e+00 1969.0
8 TraesCS7A01G268300 chr7D 95.514 691 21 3 2105 2789 249428468 249427782 0.000000e+00 1096.0
9 TraesCS7A01G268300 chr7D 93.407 455 14 8 285 736 249431289 249430848 0.000000e+00 660.0
10 TraesCS7A01G268300 chr7D 91.197 284 6 3 12 283 249433096 249432820 4.390000e-98 368.0
11 TraesCS7A01G268300 chr7D 76.000 375 78 10 1041 1412 58486917 58487282 1.710000e-42 183.0
12 TraesCS7A01G268300 chr7D 87.500 96 12 0 736 831 34303636 34303731 8.170000e-21 111.0
13 TraesCS7A01G268300 chr3B 73.472 965 226 22 1041 1991 814747705 814746757 1.240000e-88 337.0
14 TraesCS7A01G268300 chr3B 78.049 410 79 8 1009 1415 814512989 814512588 5.970000e-62 248.0
15 TraesCS7A01G268300 chr3A 72.372 1075 249 36 1009 2057 737382016 737380964 2.100000e-76 296.0
16 TraesCS7A01G268300 chr3A 87.742 155 12 7 2205 2357 83981164 83981313 1.030000e-39 174.0
17 TraesCS7A01G268300 chr5B 80.464 302 47 9 1115 1413 25335690 25335398 1.300000e-53 220.0
18 TraesCS7A01G268300 chr5B 89.524 105 10 1 730 834 600931267 600931370 6.270000e-27 132.0
19 TraesCS7A01G268300 chr6B 79.487 312 55 7 1114 1419 68394568 68394260 2.180000e-51 213.0
20 TraesCS7A01G268300 chr6B 88.776 98 11 0 734 831 22987315 22987218 1.360000e-23 121.0
21 TraesCS7A01G268300 chr1B 89.809 157 13 3 2201 2356 354929290 354929444 6.090000e-47 198.0
22 TraesCS7A01G268300 chr1B 88.660 97 11 0 734 830 606612826 606612922 4.880000e-23 119.0
23 TraesCS7A01G268300 chr6D 78.502 307 59 6 1114 1415 32640823 32640519 7.880000e-46 195.0
24 TraesCS7A01G268300 chr6D 89.286 140 12 3 2225 2363 303059984 303059847 3.690000e-39 172.0
25 TraesCS7A01G268300 chr4A 77.124 306 63 6 1112 1415 674724055 674723755 1.330000e-38 171.0
26 TraesCS7A01G268300 chr1D 85.890 163 18 5 2200 2359 108261541 108261701 4.780000e-38 169.0
27 TraesCS7A01G268300 chr5A 85.535 159 21 1 2200 2358 335291590 335291434 6.180000e-37 165.0
28 TraesCS7A01G268300 chr5A 83.626 171 26 2 2187 2357 377127419 377127251 2.880000e-35 159.0
29 TraesCS7A01G268300 chr5D 89.899 99 10 0 733 831 9123993 9123895 8.110000e-26 128.0
30 TraesCS7A01G268300 chr2A 88.660 97 11 0 734 830 281749765 281749669 4.880000e-23 119.0
31 TraesCS7A01G268300 chr2A 86.735 98 13 0 734 831 148184799 148184896 2.940000e-20 110.0
32 TraesCS7A01G268300 chr2B 86.869 99 13 0 732 830 705906632 705906534 8.170000e-21 111.0
33 TraesCS7A01G268300 chr1A 78.082 146 28 4 1850 1993 10489953 10489810 3.830000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G268300 chr7A 271728709 271731497 2788 False 5151.00 5151 100.00000 1 2789 1 chr7A.!!$F2 2788
1 TraesCS7A01G268300 chr7B 226436633 226439333 2700 True 1854.00 2996 89.71050 12 2789 2 chr7B.!!$R2 2777
2 TraesCS7A01G268300 chr7D 249427782 249433096 5314 True 1023.25 1969 93.65775 12 2789 4 chr7D.!!$R1 2777
3 TraesCS7A01G268300 chr3B 814746757 814747705 948 True 337.00 337 73.47200 1041 1991 1 chr3B.!!$R2 950
4 TraesCS7A01G268300 chr3A 737380964 737382016 1052 True 296.00 296 72.37200 1009 2057 1 chr3A.!!$R1 1048

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 1989 0.106369 CCAGCCACCATGATCCATGT 60.106 55.0 0.0 0.0 39.94 3.21 F
1064 2666 0.036010 CTGAACAGGGCGATCCACTT 60.036 55.0 0.0 0.0 38.24 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1367 2969 0.393537 CTGGCTGACATCCTCAACCC 60.394 60.0 0.0 0.0 34.53 4.11 R
1985 3596 1.410004 CTACATTCTCCGGCCCTACA 58.590 55.0 0.0 0.0 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.609853 CTGCTATCCTGGCAAAGTGTTA 58.390 45.455 0.00 0.00 39.30 2.41
59 60 3.609853 TGCTATCCTGGCAAAGTGTTAG 58.390 45.455 0.00 0.00 36.71 2.34
63 64 0.598065 CCTGGCAAAGTGTTAGCACC 59.402 55.000 6.04 0.00 46.35 5.01
64 65 0.238289 CTGGCAAAGTGTTAGCACCG 59.762 55.000 6.04 0.00 46.35 4.94
65 66 0.179043 TGGCAAAGTGTTAGCACCGA 60.179 50.000 6.04 0.00 46.35 4.69
66 67 0.237498 GGCAAAGTGTTAGCACCGAC 59.763 55.000 6.04 0.00 46.35 4.79
104 122 4.724279 ATTTCAAACCTCACCTACACCT 57.276 40.909 0.00 0.00 0.00 4.00
105 123 5.836024 ATTTCAAACCTCACCTACACCTA 57.164 39.130 0.00 0.00 0.00 3.08
106 124 4.612264 TTCAAACCTCACCTACACCTAC 57.388 45.455 0.00 0.00 0.00 3.18
107 125 3.578978 TCAAACCTCACCTACACCTACA 58.421 45.455 0.00 0.00 0.00 2.74
108 126 3.322828 TCAAACCTCACCTACACCTACAC 59.677 47.826 0.00 0.00 0.00 2.90
120 138 0.320771 ACCTACACAGCCGCTTTCAG 60.321 55.000 0.00 0.00 0.00 3.02
130 148 0.107993 CCGCTTTCAGCAGGATCAGA 60.108 55.000 0.00 0.00 42.58 3.27
184 202 2.442413 GGCCAGTGGTATGCTTGTTTA 58.558 47.619 11.74 0.00 0.00 2.01
203 221 2.957402 AAGCAATGAACTCCTCACCA 57.043 45.000 0.00 0.00 36.69 4.17
321 1868 1.135859 GCACCGAGCAACAGAAAGATG 60.136 52.381 0.00 0.00 44.79 2.90
380 1929 3.695606 GGAGCCGCACCACAGAGA 61.696 66.667 1.41 0.00 0.00 3.10
381 1930 2.433318 GAGCCGCACCACAGAGAC 60.433 66.667 0.00 0.00 0.00 3.36
382 1931 3.226429 GAGCCGCACCACAGAGACA 62.226 63.158 0.00 0.00 0.00 3.41
383 1932 3.044305 GCCGCACCACAGAGACAC 61.044 66.667 0.00 0.00 0.00 3.67
384 1933 2.421314 CCGCACCACAGAGACACA 59.579 61.111 0.00 0.00 0.00 3.72
385 1934 1.227527 CCGCACCACAGAGACACAA 60.228 57.895 0.00 0.00 0.00 3.33
386 1935 0.603707 CCGCACCACAGAGACACAAT 60.604 55.000 0.00 0.00 0.00 2.71
387 1936 0.792640 CGCACCACAGAGACACAATC 59.207 55.000 0.00 0.00 0.00 2.67
388 1937 1.873486 CGCACCACAGAGACACAATCA 60.873 52.381 0.00 0.00 0.00 2.57
389 1938 1.532868 GCACCACAGAGACACAATCAC 59.467 52.381 0.00 0.00 0.00 3.06
440 1989 0.106369 CCAGCCACCATGATCCATGT 60.106 55.000 0.00 0.00 39.94 3.21
495 2046 0.248743 GCACGCATAGCACATGCATT 60.249 50.000 19.53 6.41 44.75 3.56
534 2099 1.526575 AACTTTGAGGTGCCCATGCG 61.527 55.000 0.00 0.00 41.78 4.73
747 2328 9.796180 TTTCTTATATAGTACTCCCTCTGTCTC 57.204 37.037 0.00 0.00 0.00 3.36
748 2329 8.507582 TCTTATATAGTACTCCCTCTGTCTCA 57.492 38.462 0.00 0.00 0.00 3.27
749 2330 8.946248 TCTTATATAGTACTCCCTCTGTCTCAA 58.054 37.037 0.00 0.00 0.00 3.02
750 2331 9.575868 CTTATATAGTACTCCCTCTGTCTCAAA 57.424 37.037 0.00 0.00 0.00 2.69
751 2332 9.931698 TTATATAGTACTCCCTCTGTCTCAAAA 57.068 33.333 0.00 0.00 0.00 2.44
752 2333 4.875561 AGTACTCCCTCTGTCTCAAAAC 57.124 45.455 0.00 0.00 0.00 2.43
753 2334 4.223953 AGTACTCCCTCTGTCTCAAAACA 58.776 43.478 0.00 0.00 0.00 2.83
754 2335 4.654262 AGTACTCCCTCTGTCTCAAAACAA 59.346 41.667 0.00 0.00 0.00 2.83
755 2336 4.078639 ACTCCCTCTGTCTCAAAACAAG 57.921 45.455 0.00 0.00 0.00 3.16
756 2337 3.456277 ACTCCCTCTGTCTCAAAACAAGT 59.544 43.478 0.00 0.00 0.00 3.16
757 2338 4.654262 ACTCCCTCTGTCTCAAAACAAGTA 59.346 41.667 0.00 0.00 0.00 2.24
758 2339 5.308237 ACTCCCTCTGTCTCAAAACAAGTAT 59.692 40.000 0.00 0.00 0.00 2.12
759 2340 5.794894 TCCCTCTGTCTCAAAACAAGTATC 58.205 41.667 0.00 0.00 0.00 2.24
760 2341 5.544176 TCCCTCTGTCTCAAAACAAGTATCT 59.456 40.000 0.00 0.00 0.00 1.98
761 2342 6.043243 TCCCTCTGTCTCAAAACAAGTATCTT 59.957 38.462 0.00 0.00 0.00 2.40
762 2343 7.234782 TCCCTCTGTCTCAAAACAAGTATCTTA 59.765 37.037 0.00 0.00 0.00 2.10
763 2344 7.878127 CCCTCTGTCTCAAAACAAGTATCTTAA 59.122 37.037 0.00 0.00 0.00 1.85
764 2345 8.713271 CCTCTGTCTCAAAACAAGTATCTTAAC 58.287 37.037 0.00 0.00 0.00 2.01
765 2346 8.603242 TCTGTCTCAAAACAAGTATCTTAACC 57.397 34.615 0.00 0.00 0.00 2.85
766 2347 8.429641 TCTGTCTCAAAACAAGTATCTTAACCT 58.570 33.333 0.00 0.00 0.00 3.50
767 2348 8.974060 TGTCTCAAAACAAGTATCTTAACCTT 57.026 30.769 0.00 0.00 0.00 3.50
819 2400 9.797556 ACAAAGTTAAGACACTTATTTTTGGAC 57.202 29.630 19.57 6.35 35.87 4.02
820 2401 8.953990 CAAAGTTAAGACACTTATTTTTGGACG 58.046 33.333 0.55 0.00 35.87 4.79
821 2402 7.198306 AGTTAAGACACTTATTTTTGGACGG 57.802 36.000 0.00 0.00 0.00 4.79
822 2403 6.993902 AGTTAAGACACTTATTTTTGGACGGA 59.006 34.615 0.00 0.00 0.00 4.69
823 2404 5.941948 AAGACACTTATTTTTGGACGGAG 57.058 39.130 0.00 0.00 0.00 4.63
824 2405 4.324267 AGACACTTATTTTTGGACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
825 2406 3.418047 ACACTTATTTTTGGACGGAGGG 58.582 45.455 0.00 0.00 0.00 4.30
860 2441 3.869246 AGGTTAACTTTGAGACACACACG 59.131 43.478 5.42 0.00 0.00 4.49
916 2512 1.415659 CCATCCACTGGGCTTCTCTAG 59.584 57.143 0.00 0.00 41.82 2.43
934 2536 0.326048 AGCTCTACTCCCACCAGCAT 60.326 55.000 0.00 0.00 32.17 3.79
956 2558 2.480419 CAGCACTAGCAGTACACCAAAC 59.520 50.000 0.00 0.00 45.49 2.93
1003 2605 1.988107 AGGAGGGAAACTGCTTCATGA 59.012 47.619 0.00 0.00 46.85 3.07
1064 2666 0.036010 CTGAACAGGGCGATCCACTT 60.036 55.000 0.00 0.00 38.24 3.16
1307 2909 2.047179 GAGGTCCTGGTGGCGTTC 60.047 66.667 0.00 0.00 0.00 3.95
1367 2969 0.831966 ATGAAGGAGCTCAGAGCCAG 59.168 55.000 19.40 0.00 43.77 4.85
1522 3130 2.452600 AAAGGCAAAAGTGGGTCTCA 57.547 45.000 0.00 0.00 0.00 3.27
1525 3133 2.962859 AGGCAAAAGTGGGTCTCATTT 58.037 42.857 0.00 0.00 0.00 2.32
1574 3182 0.969149 AGAGTCATTGCGGTGTCAGA 59.031 50.000 0.00 0.00 0.00 3.27
1599 3207 4.191544 CAAATGCTATCGGTCTTGGAGAA 58.808 43.478 0.00 0.00 0.00 2.87
1887 3496 3.582647 TGTGATTGATGACCTACACACCT 59.417 43.478 0.00 0.00 34.19 4.00
1985 3596 5.284079 CAAGTTGAAGTTGCAAGCTTATGT 58.716 37.500 0.00 0.00 0.00 2.29
2079 3696 3.411446 ACATTCAAACTCTGATTCGCCA 58.589 40.909 0.00 0.00 32.78 5.69
2085 3702 6.122850 TCAAACTCTGATTCGCCAAATATG 57.877 37.500 0.00 0.00 0.00 1.78
2088 3705 6.949352 AACTCTGATTCGCCAAATATGATT 57.051 33.333 0.00 0.00 0.00 2.57
2170 4915 5.759506 ACAACACCATCAATAACGTGAAA 57.240 34.783 0.00 0.00 0.00 2.69
2210 4955 8.041919 GCCAAATCTAGTAAAGTACTTCCTCTT 58.958 37.037 8.95 0.00 40.14 2.85
2292 5037 5.650266 TGAGTGACCAAACACACTAAAATGT 59.350 36.000 0.00 0.00 45.54 2.71
2674 5420 8.472007 TTGTTTACATGAATTACAAGAAGGGT 57.528 30.769 0.00 0.00 0.00 4.34
2709 5455 8.834465 ACTTTATGTGCTAACATGATCTTCATC 58.166 33.333 0.00 0.00 46.66 2.92
2710 5456 5.919272 ATGTGCTAACATGATCTTCATCG 57.081 39.130 0.00 0.00 45.51 3.84
2711 5457 4.122046 TGTGCTAACATGATCTTCATCGG 58.878 43.478 0.00 0.00 34.28 4.18
2737 5483 7.650104 GTCACATCAACTAGTTTAGGAGATAGC 59.350 40.741 5.07 0.00 0.00 2.97
2781 5527 4.553323 CGGATAATTAACTACCCTGGACG 58.447 47.826 0.00 0.00 0.00 4.79
2786 5532 1.767759 TAACTACCCTGGACGCTACC 58.232 55.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.815401 CTGGTTGTAGTAAGTTGCTTGCT 59.185 43.478 0.00 5.00 39.54 3.91
1 2 3.813166 TCTGGTTGTAGTAAGTTGCTTGC 59.187 43.478 0.00 0.00 0.00 4.01
2 3 6.560253 ATTCTGGTTGTAGTAAGTTGCTTG 57.440 37.500 0.00 0.00 0.00 4.01
3 4 7.603024 GTCTATTCTGGTTGTAGTAAGTTGCTT 59.397 37.037 0.00 0.00 0.00 3.91
4 5 7.097834 GTCTATTCTGGTTGTAGTAAGTTGCT 58.902 38.462 0.00 0.00 0.00 3.91
5 6 6.872020 TGTCTATTCTGGTTGTAGTAAGTTGC 59.128 38.462 0.00 0.00 0.00 4.17
6 7 7.870954 TGTGTCTATTCTGGTTGTAGTAAGTTG 59.129 37.037 0.00 0.00 0.00 3.16
7 8 7.959175 TGTGTCTATTCTGGTTGTAGTAAGTT 58.041 34.615 0.00 0.00 0.00 2.66
8 9 7.534723 TGTGTCTATTCTGGTTGTAGTAAGT 57.465 36.000 0.00 0.00 0.00 2.24
9 10 8.709646 GTTTGTGTCTATTCTGGTTGTAGTAAG 58.290 37.037 0.00 0.00 0.00 2.34
10 11 7.658575 GGTTTGTGTCTATTCTGGTTGTAGTAA 59.341 37.037 0.00 0.00 0.00 2.24
58 59 2.910688 TTCTCTTCTTTGTCGGTGCT 57.089 45.000 0.00 0.00 0.00 4.40
59 60 3.498397 TGAATTCTCTTCTTTGTCGGTGC 59.502 43.478 7.05 0.00 0.00 5.01
63 64 8.786937 TGAAATTTGAATTCTCTTCTTTGTCG 57.213 30.769 7.05 0.00 0.00 4.35
120 138 0.394080 AGGCTTTGCTCTGATCCTGC 60.394 55.000 0.00 0.00 0.00 4.85
184 202 2.787994 CTGGTGAGGAGTTCATTGCTT 58.212 47.619 0.00 0.00 38.29 3.91
203 221 4.286032 TCACTCCTACACAAATGGTAAGCT 59.714 41.667 0.00 0.00 0.00 3.74
305 1852 5.163913 CCTTTACTCATCTTTCTGTTGCTCG 60.164 44.000 0.00 0.00 0.00 5.03
321 1868 9.239551 ACCAAATAGAATACCAAACCTTTACTC 57.760 33.333 0.00 0.00 0.00 2.59
380 1929 1.408702 GCAACCCTTGTGTGATTGTGT 59.591 47.619 0.00 0.00 0.00 3.72
381 1930 1.682854 AGCAACCCTTGTGTGATTGTG 59.317 47.619 0.00 0.00 0.00 3.33
382 1931 2.071778 AGCAACCCTTGTGTGATTGT 57.928 45.000 0.00 0.00 0.00 2.71
383 1932 3.068590 AGAAAGCAACCCTTGTGTGATTG 59.931 43.478 0.00 0.00 33.01 2.67
384 1933 3.299503 AGAAAGCAACCCTTGTGTGATT 58.700 40.909 0.00 0.00 33.01 2.57
385 1934 2.949447 AGAAAGCAACCCTTGTGTGAT 58.051 42.857 0.00 0.00 33.01 3.06
386 1935 2.435372 AGAAAGCAACCCTTGTGTGA 57.565 45.000 0.00 0.00 33.01 3.58
387 1936 3.447742 GAAAGAAAGCAACCCTTGTGTG 58.552 45.455 0.00 0.00 33.01 3.82
388 1937 2.430694 GGAAAGAAAGCAACCCTTGTGT 59.569 45.455 0.00 0.00 33.01 3.72
389 1938 2.430332 TGGAAAGAAAGCAACCCTTGTG 59.570 45.455 0.00 0.00 33.01 3.33
534 2099 8.895932 ATTATTGAACGTGAAAAGATAAGCAC 57.104 30.769 0.00 0.00 0.00 4.40
568 2133 1.805943 CCATGTCAGACATCAACGCAA 59.194 47.619 13.53 0.00 36.53 4.85
691 2272 5.083821 AGAAGAAAAGGAGCACTAGAGTCT 58.916 41.667 0.00 0.00 0.00 3.24
732 2313 4.602340 TGTTTTGAGACAGAGGGAGTAC 57.398 45.455 0.00 0.00 0.00 2.73
733 2314 4.654262 ACTTGTTTTGAGACAGAGGGAGTA 59.346 41.667 0.00 0.00 0.00 2.59
735 2316 4.078639 ACTTGTTTTGAGACAGAGGGAG 57.921 45.455 0.00 0.00 0.00 4.30
736 2317 5.544176 AGATACTTGTTTTGAGACAGAGGGA 59.456 40.000 0.00 0.00 0.00 4.20
737 2318 5.799213 AGATACTTGTTTTGAGACAGAGGG 58.201 41.667 0.00 0.00 0.00 4.30
738 2319 8.713271 GTTAAGATACTTGTTTTGAGACAGAGG 58.287 37.037 0.00 0.00 0.00 3.69
739 2320 8.713271 GGTTAAGATACTTGTTTTGAGACAGAG 58.287 37.037 0.00 0.00 0.00 3.35
740 2321 8.429641 AGGTTAAGATACTTGTTTTGAGACAGA 58.570 33.333 0.00 0.00 0.00 3.41
741 2322 8.608844 AGGTTAAGATACTTGTTTTGAGACAG 57.391 34.615 0.00 0.00 0.00 3.51
742 2323 8.974060 AAGGTTAAGATACTTGTTTTGAGACA 57.026 30.769 0.00 0.00 0.00 3.41
793 2374 9.797556 GTCCAAAAATAAGTGTCTTAACTTTGT 57.202 29.630 16.32 2.02 40.77 2.83
794 2375 8.953990 CGTCCAAAAATAAGTGTCTTAACTTTG 58.046 33.333 13.58 13.58 40.77 2.77
795 2376 8.132995 CCGTCCAAAAATAAGTGTCTTAACTTT 58.867 33.333 0.00 0.00 40.77 2.66
796 2377 7.499895 TCCGTCCAAAAATAAGTGTCTTAACTT 59.500 33.333 0.00 0.00 42.89 2.66
797 2378 6.993902 TCCGTCCAAAAATAAGTGTCTTAACT 59.006 34.615 0.00 0.00 0.00 2.24
798 2379 7.193377 TCCGTCCAAAAATAAGTGTCTTAAC 57.807 36.000 0.00 0.00 0.00 2.01
799 2380 6.428771 CCTCCGTCCAAAAATAAGTGTCTTAA 59.571 38.462 0.00 0.00 0.00 1.85
800 2381 5.935789 CCTCCGTCCAAAAATAAGTGTCTTA 59.064 40.000 0.00 0.00 0.00 2.10
801 2382 4.760204 CCTCCGTCCAAAAATAAGTGTCTT 59.240 41.667 0.00 0.00 0.00 3.01
802 2383 4.324267 CCTCCGTCCAAAAATAAGTGTCT 58.676 43.478 0.00 0.00 0.00 3.41
803 2384 3.439129 CCCTCCGTCCAAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
804 2385 3.073356 TCCCTCCGTCCAAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
805 2386 3.681593 TCCCTCCGTCCAAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
806 2387 3.329814 ACTCCCTCCGTCCAAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
807 2388 3.951663 ACTCCCTCCGTCCAAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
808 2389 4.621274 CGTACTCCCTCCGTCCAAAAATAA 60.621 45.833 0.00 0.00 0.00 1.40
809 2390 3.119029 CGTACTCCCTCCGTCCAAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
810 2391 2.354403 CGTACTCCCTCCGTCCAAAAAT 60.354 50.000 0.00 0.00 0.00 1.82
811 2392 1.001181 CGTACTCCCTCCGTCCAAAAA 59.999 52.381 0.00 0.00 0.00 1.94
812 2393 0.604578 CGTACTCCCTCCGTCCAAAA 59.395 55.000 0.00 0.00 0.00 2.44
813 2394 0.540365 ACGTACTCCCTCCGTCCAAA 60.540 55.000 0.00 0.00 0.00 3.28
814 2395 0.327924 TACGTACTCCCTCCGTCCAA 59.672 55.000 0.00 0.00 36.12 3.53
815 2396 0.392998 GTACGTACTCCCTCCGTCCA 60.393 60.000 18.47 0.00 36.12 4.02
816 2397 1.098129 GGTACGTACTCCCTCCGTCC 61.098 65.000 24.07 0.75 36.12 4.79
817 2398 0.392998 TGGTACGTACTCCCTCCGTC 60.393 60.000 24.07 5.85 36.12 4.79
818 2399 0.038166 TTGGTACGTACTCCCTCCGT 59.962 55.000 24.07 0.00 38.53 4.69
819 2400 1.133790 CTTTGGTACGTACTCCCTCCG 59.866 57.143 24.07 4.48 0.00 4.63
820 2401 1.479730 CCTTTGGTACGTACTCCCTCC 59.520 57.143 24.07 8.11 0.00 4.30
821 2402 2.174360 ACCTTTGGTACGTACTCCCTC 58.826 52.381 24.07 8.64 32.11 4.30
822 2403 2.315720 ACCTTTGGTACGTACTCCCT 57.684 50.000 24.07 1.12 32.11 4.20
823 2404 4.021104 AGTTAACCTTTGGTACGTACTCCC 60.021 45.833 24.07 9.58 33.12 4.30
824 2405 5.139435 AGTTAACCTTTGGTACGTACTCC 57.861 43.478 24.07 10.32 33.12 3.85
860 2441 1.281899 GATCAGCTACAAGACCGTGC 58.718 55.000 0.00 0.00 0.00 5.34
916 2512 0.105778 GATGCTGGTGGGAGTAGAGC 59.894 60.000 0.00 0.00 0.00 4.09
934 2536 1.627864 TGGTGTACTGCTAGTGCTGA 58.372 50.000 0.00 0.00 40.66 4.26
956 2558 2.415357 GGGATTTGTGTGCGTGTATTGG 60.415 50.000 0.00 0.00 0.00 3.16
1003 2605 0.106619 ACCGTCTCCTCGATTAGCCT 60.107 55.000 0.00 0.00 0.00 4.58
1119 2721 1.511305 GTCGGCGATGAAGGTCTGA 59.489 57.895 14.79 0.00 0.00 3.27
1367 2969 0.393537 CTGGCTGACATCCTCAACCC 60.394 60.000 0.00 0.00 34.53 4.11
1497 3105 2.771372 ACCCACTTTTGCCTTTTCATGT 59.229 40.909 0.00 0.00 0.00 3.21
1522 3130 2.758979 CCTTCTTGCTGATGAGCCAAAT 59.241 45.455 0.38 0.00 45.57 2.32
1525 3133 0.986527 TCCTTCTTGCTGATGAGCCA 59.013 50.000 0.38 0.00 45.57 4.75
1574 3182 3.197766 TCCAAGACCGATAGCATTTGTCT 59.802 43.478 0.00 0.00 37.88 3.41
1599 3207 2.427506 GCTCTTTTGACGATGGAGGTT 58.572 47.619 0.00 0.00 0.00 3.50
1887 3496 7.395772 TGTTATAATGCAATCCCACTCTTCAAA 59.604 33.333 0.00 0.00 0.00 2.69
1985 3596 1.410004 CTACATTCTCCGGCCCTACA 58.590 55.000 0.00 0.00 0.00 2.74
2085 3702 8.398665 CCAACAAGAGGTAGCATTAGTAAAATC 58.601 37.037 0.00 0.00 0.00 2.17
2088 3705 5.646360 GCCAACAAGAGGTAGCATTAGTAAA 59.354 40.000 0.00 0.00 0.00 2.01
2170 4915 6.891908 ACTAGATTTGGCAACCTATTGATTGT 59.108 34.615 0.00 0.00 38.15 2.71
2210 4955 9.878667 TCCAAAACATCTTATAATACTGAACGA 57.121 29.630 0.00 0.00 0.00 3.85
2251 4996 6.273825 GTCACTCATTTCAGTCCGTATGTAT 58.726 40.000 0.00 0.00 0.00 2.29
2320 5065 8.662781 TGTTCACTATTATAAGATGTTCCAGC 57.337 34.615 0.00 0.00 0.00 4.85
2323 5068 9.482627 CCTCTGTTCACTATTATAAGATGTTCC 57.517 37.037 0.00 0.00 0.00 3.62
2674 5420 7.977789 TGTTAGCACATAAAGTTCTTGATGA 57.022 32.000 14.66 0.00 0.00 2.92
2709 5455 5.068234 TCCTAAACTAGTTGATGTGACCG 57.932 43.478 9.34 0.00 0.00 4.79
2710 5456 6.282199 TCTCCTAAACTAGTTGATGTGACC 57.718 41.667 9.34 0.00 0.00 4.02
2711 5457 7.650104 GCTATCTCCTAAACTAGTTGATGTGAC 59.350 40.741 9.34 0.00 0.00 3.67
2752 5498 3.072038 GGTAGTTAATTATCCGGCCTGGT 59.928 47.826 12.46 0.00 39.52 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.