Multiple sequence alignment - TraesCS7A01G268200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G268200 chr7A 100.000 2471 0 0 1 2471 271725071 271722601 0.000000e+00 4564.0
1 TraesCS7A01G268200 chr7A 85.333 150 11 5 1059 1204 271723929 271723787 7.120000e-31 145.0
2 TraesCS7A01G268200 chr7A 85.333 150 11 5 1143 1285 271724013 271723868 7.120000e-31 145.0
3 TraesCS7A01G268200 chr7D 92.308 780 34 8 747 1517 249485113 249485875 0.000000e+00 1085.0
4 TraesCS7A01G268200 chr7D 86.486 222 17 5 1770 1979 249485898 249486118 5.310000e-57 231.0
5 TraesCS7A01G268200 chr7D 94.400 125 7 0 1076 1200 249485517 249485641 2.510000e-45 193.0
6 TraesCS7A01G268200 chr7D 84.242 165 17 5 1143 1301 249485413 249485574 4.260000e-33 152.0
7 TraesCS7A01G268200 chr7B 90.442 837 47 13 697 1522 226441029 226441843 0.000000e+00 1072.0
8 TraesCS7A01G268200 chr7B 83.067 750 65 21 1770 2471 226441859 226442594 2.090000e-175 625.0
9 TraesCS7A01G268200 chr7B 88.667 150 12 3 1059 1204 226441457 226441605 7.020000e-41 178.0
10 TraesCS7A01G268200 chr7B 84.713 157 13 5 1143 1292 226441373 226441525 1.980000e-31 147.0
11 TraesCS7A01G268200 chr6B 92.168 715 35 11 1 696 54896246 54896958 0.000000e+00 990.0
12 TraesCS7A01G268200 chr5D 90.847 732 36 9 1 704 494610033 494609305 0.000000e+00 952.0
13 TraesCS7A01G268200 chr1B 87.278 731 38 12 1 700 350439868 350440574 0.000000e+00 784.0
14 TraesCS7A01G268200 chr1B 88.462 52 3 2 1717 1768 205428568 205428520 2.650000e-05 60.2
15 TraesCS7A01G268200 chr4D 93.333 510 28 4 1 507 365400401 365399895 0.000000e+00 749.0
16 TraesCS7A01G268200 chr4D 85.279 197 12 7 519 699 365399836 365399641 1.170000e-43 187.0
17 TraesCS7A01G268200 chr1D 89.456 588 26 15 1 576 463053601 463053038 0.000000e+00 710.0
18 TraesCS7A01G268200 chr1D 86.538 52 4 2 1717 1768 132214264 132214216 1.000000e-03 54.7
19 TraesCS7A01G268200 chr6D 88.780 508 18 5 228 697 472582535 472582029 9.850000e-164 586.0
20 TraesCS7A01G268200 chr4B 86.624 471 27 17 250 696 450089963 450089505 2.860000e-134 488.0
21 TraesCS7A01G268200 chr3D 92.355 327 19 6 228 550 589508003 589508327 6.230000e-126 460.0
22 TraesCS7A01G268200 chr3D 90.947 243 18 2 1 243 589507825 589508063 8.520000e-85 324.0
23 TraesCS7A01G268200 chr3D 93.939 99 6 0 577 675 589518547 589518645 1.530000e-32 150.0
24 TraesCS7A01G268200 chr2B 86.162 383 32 7 1143 1515 770071746 770071375 6.410000e-106 394.0
25 TraesCS7A01G268200 chr2D 87.464 351 30 10 1163 1510 627823810 627823471 2.300000e-105 392.0
26 TraesCS7A01G268200 chr2D 87.402 127 13 1 1060 1186 627823826 627823703 2.560000e-30 143.0
27 TraesCS7A01G268200 chr2A 86.957 345 30 8 1143 1484 758280602 758280270 8.340000e-100 374.0
28 TraesCS7A01G268200 chrUn 95.783 166 6 1 1 165 323368749 323368914 1.460000e-67 267.0
29 TraesCS7A01G268200 chrUn 95.181 166 7 1 1 165 287556883 287556718 6.780000e-66 261.0
30 TraesCS7A01G268200 chrUn 95.181 166 7 1 1 165 287558478 287558313 6.780000e-66 261.0
31 TraesCS7A01G268200 chrUn 95.181 166 7 1 1 165 425525522 425525687 6.780000e-66 261.0
32 TraesCS7A01G268200 chr1A 79.487 117 17 5 280 390 9314188 9314303 2.640000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G268200 chr7A 271722601 271725071 2470 True 1618.00 4564 90.22200 1 2471 3 chr7A.!!$R1 2470
1 TraesCS7A01G268200 chr7D 249485113 249486118 1005 False 415.25 1085 89.35900 747 1979 4 chr7D.!!$F1 1232
2 TraesCS7A01G268200 chr7B 226441029 226442594 1565 False 505.50 1072 86.72225 697 2471 4 chr7B.!!$F1 1774
3 TraesCS7A01G268200 chr6B 54896246 54896958 712 False 990.00 990 92.16800 1 696 1 chr6B.!!$F1 695
4 TraesCS7A01G268200 chr5D 494609305 494610033 728 True 952.00 952 90.84700 1 704 1 chr5D.!!$R1 703
5 TraesCS7A01G268200 chr1B 350439868 350440574 706 False 784.00 784 87.27800 1 700 1 chr1B.!!$F1 699
6 TraesCS7A01G268200 chr4D 365399641 365400401 760 True 468.00 749 89.30600 1 699 2 chr4D.!!$R1 698
7 TraesCS7A01G268200 chr1D 463053038 463053601 563 True 710.00 710 89.45600 1 576 1 chr1D.!!$R2 575
8 TraesCS7A01G268200 chr6D 472582029 472582535 506 True 586.00 586 88.78000 228 697 1 chr6D.!!$R1 469
9 TraesCS7A01G268200 chr3D 589507825 589508327 502 False 392.00 460 91.65100 1 550 2 chr3D.!!$F2 549
10 TraesCS7A01G268200 chrUn 287556718 287558478 1760 True 261.00 261 95.18100 1 165 2 chrUn.!!$R1 164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 2125 0.036164 TCCCTTGTGTGGTGATTCCG 59.964 55.0 0.0 0.0 39.52 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1654 3066 0.031314 CCGTGATACAGAGCGAGCAT 59.969 55.0 0.0 0.0 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 714 2.558359 GAGACCAACCCCACTCATTTTG 59.442 50.000 0.00 0.00 0.00 2.44
194 718 3.973305 ACCAACCCCACTCATTTTGAAAT 59.027 39.130 0.00 0.00 0.00 2.17
415 1650 7.067532 AGTTTCCAAAACAAAAATTCGGTTC 57.932 32.000 5.46 0.00 0.00 3.62
526 1900 4.253685 GCAGCCAGTGTTACTATTCTGAA 58.746 43.478 0.00 0.00 0.00 3.02
533 1907 7.119846 GCCAGTGTTACTATTCTGAATGAAAGT 59.880 37.037 13.01 10.61 38.29 2.66
584 1974 3.055819 AGTCTGTGCATGTCTATTCCGTT 60.056 43.478 0.00 0.00 0.00 4.44
592 1982 6.037172 GTGCATGTCTATTCCGTTTGTATCTT 59.963 38.462 0.00 0.00 0.00 2.40
642 2032 3.062774 GCACGAATCTTAAAGTCTGAGGC 59.937 47.826 0.00 0.00 0.00 4.70
714 2104 3.762992 CACGCCTACGCACACACG 61.763 66.667 0.00 0.00 45.53 4.49
723 2113 2.177580 CGCACACACGTTCCCTTGT 61.178 57.895 0.00 0.00 0.00 3.16
727 2117 4.551729 ACACGTTCCCTTGTGTGG 57.448 55.556 0.00 0.00 46.87 4.17
729 2119 0.746563 ACACGTTCCCTTGTGTGGTG 60.747 55.000 0.00 0.00 46.87 4.17
730 2120 0.462937 CACGTTCCCTTGTGTGGTGA 60.463 55.000 0.00 0.00 0.00 4.02
731 2121 0.472471 ACGTTCCCTTGTGTGGTGAT 59.528 50.000 0.00 0.00 0.00 3.06
732 2122 1.133915 ACGTTCCCTTGTGTGGTGATT 60.134 47.619 0.00 0.00 0.00 2.57
733 2123 1.535462 CGTTCCCTTGTGTGGTGATTC 59.465 52.381 0.00 0.00 0.00 2.52
734 2124 1.886542 GTTCCCTTGTGTGGTGATTCC 59.113 52.381 0.00 0.00 0.00 3.01
735 2125 0.036164 TCCCTTGTGTGGTGATTCCG 59.964 55.000 0.00 0.00 39.52 4.30
777 2167 0.464735 TACGCCACTGCAAAACCTGT 60.465 50.000 0.00 0.00 37.32 4.00
782 2172 1.528309 ACTGCAAAACCTGTCCCGG 60.528 57.895 0.00 0.00 0.00 5.73
820 2210 3.637273 GGGCACTCAGACCCGGTT 61.637 66.667 0.00 0.00 40.85 4.44
863 2253 5.411781 GGATCGGCCACTCTTTATACATAG 58.588 45.833 2.24 0.00 36.34 2.23
864 2254 4.866508 TCGGCCACTCTTTATACATAGG 57.133 45.455 2.24 0.00 0.00 2.57
865 2255 4.476297 TCGGCCACTCTTTATACATAGGA 58.524 43.478 2.24 0.00 0.00 2.94
866 2256 4.523173 TCGGCCACTCTTTATACATAGGAG 59.477 45.833 2.24 0.00 0.00 3.69
867 2257 4.281182 CGGCCACTCTTTATACATAGGAGT 59.719 45.833 2.24 0.00 37.69 3.85
868 2258 5.475909 CGGCCACTCTTTATACATAGGAGTA 59.524 44.000 2.24 0.00 35.79 2.59
869 2259 6.015688 CGGCCACTCTTTATACATAGGAGTAA 60.016 42.308 2.24 0.00 35.79 2.24
870 2260 7.309867 CGGCCACTCTTTATACATAGGAGTAAT 60.310 40.741 2.24 0.00 35.79 1.89
871 2261 9.032624 GGCCACTCTTTATACATAGGAGTAATA 57.967 37.037 0.00 0.00 35.79 0.98
892 2286 9.614792 GTAATAATCTACCTCAAGGAACAACAT 57.385 33.333 2.30 0.00 38.94 2.71
903 2297 5.122239 TCAAGGAACAACATAAGCTCAATCG 59.878 40.000 0.00 0.00 0.00 3.34
935 2329 0.109272 CGCGTCAAAGACCTAGCTCA 60.109 55.000 0.00 0.00 0.00 4.26
1168 2562 4.680237 CCGGCGTCAAGTGGCTGA 62.680 66.667 6.01 0.00 37.75 4.26
1206 2600 2.329379 GAGTACGTGCAGTTCCTCAAG 58.671 52.381 6.38 0.00 32.87 3.02
1425 2825 2.981302 CACATCACGAGCCTCCCA 59.019 61.111 0.00 0.00 0.00 4.37
1478 2881 1.295792 GCGCAAGATTAATCGGGACA 58.704 50.000 0.30 0.00 43.02 4.02
1483 2886 2.874701 CAAGATTAATCGGGACAGCCTG 59.125 50.000 9.78 0.00 42.30 4.85
1484 2887 1.202698 AGATTAATCGGGACAGCCTGC 60.203 52.381 9.78 0.00 40.61 4.85
1485 2888 0.179018 ATTAATCGGGACAGCCTGCC 60.179 55.000 0.00 0.00 40.61 4.85
1486 2889 2.265467 TTAATCGGGACAGCCTGCCC 62.265 60.000 12.60 12.60 40.61 5.36
1497 2900 2.677228 CCTGCCCTGGTTCGGATT 59.323 61.111 0.00 0.00 0.00 3.01
1506 2918 3.134458 CCTGGTTCGGATTAAGAGATGC 58.866 50.000 0.00 0.00 0.00 3.91
1522 2934 1.943340 GATGCTAGCTGCTTGGTTACC 59.057 52.381 17.23 0.00 43.37 2.85
1523 2935 0.690192 TGCTAGCTGCTTGGTTACCA 59.310 50.000 17.23 0.00 43.37 3.25
1526 2938 0.326927 TAGCTGCTTGGTTACCACCC 59.673 55.000 7.79 0.00 43.49 4.61
1528 2940 0.960861 GCTGCTTGGTTACCACCCTC 60.961 60.000 2.39 0.00 43.49 4.30
1529 2941 0.693049 CTGCTTGGTTACCACCCTCT 59.307 55.000 2.39 0.00 43.49 3.69
1530 2942 1.073923 CTGCTTGGTTACCACCCTCTT 59.926 52.381 2.39 0.00 43.49 2.85
1531 2943 1.073284 TGCTTGGTTACCACCCTCTTC 59.927 52.381 2.39 0.00 43.49 2.87
1532 2944 1.613520 GCTTGGTTACCACCCTCTTCC 60.614 57.143 2.39 0.00 43.49 3.46
1533 2945 0.688487 TTGGTTACCACCCTCTTCCG 59.312 55.000 2.39 0.00 43.49 4.30
1534 2946 1.078637 GGTTACCACCCTCTTCCGC 60.079 63.158 0.00 0.00 37.03 5.54
1535 2947 1.078637 GTTACCACCCTCTTCCGCC 60.079 63.158 0.00 0.00 0.00 6.13
1538 2950 3.787001 CCACCCTCTTCCGCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
1539 2951 3.787001 CACCCTCTTCCGCCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
1540 2952 4.012721 ACCCTCTTCCGCCTCCCT 62.013 66.667 0.00 0.00 0.00 4.20
1541 2953 3.157949 CCCTCTTCCGCCTCCCTC 61.158 72.222 0.00 0.00 0.00 4.30
1542 2954 3.157949 CCTCTTCCGCCTCCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
1543 2955 2.042435 CTCTTCCGCCTCCCTCCT 60.042 66.667 0.00 0.00 0.00 3.69
1544 2956 2.364317 TCTTCCGCCTCCCTCCTG 60.364 66.667 0.00 0.00 0.00 3.86
1545 2957 3.474570 CTTCCGCCTCCCTCCTGG 61.475 72.222 0.00 0.00 0.00 4.45
1554 2966 4.918201 CCCTCCTGGCCGCGATTC 62.918 72.222 8.23 0.00 0.00 2.52
1555 2967 4.161295 CCTCCTGGCCGCGATTCA 62.161 66.667 8.23 1.22 0.00 2.57
1556 2968 2.125147 CTCCTGGCCGCGATTCAA 60.125 61.111 8.23 0.00 0.00 2.69
1557 2969 2.125147 TCCTGGCCGCGATTCAAG 60.125 61.111 8.23 0.00 0.00 3.02
1558 2970 2.125147 CCTGGCCGCGATTCAAGA 60.125 61.111 8.23 0.00 0.00 3.02
1559 2971 1.524621 CCTGGCCGCGATTCAAGAT 60.525 57.895 8.23 0.00 0.00 2.40
1560 2972 1.645455 CTGGCCGCGATTCAAGATG 59.355 57.895 8.23 0.00 0.00 2.90
1561 2973 0.811219 CTGGCCGCGATTCAAGATGA 60.811 55.000 8.23 0.00 0.00 2.92
1562 2974 1.089481 TGGCCGCGATTCAAGATGAC 61.089 55.000 8.23 0.00 0.00 3.06
1563 2975 1.273887 GCCGCGATTCAAGATGACG 59.726 57.895 8.23 0.00 0.00 4.35
1564 2976 1.273887 CCGCGATTCAAGATGACGC 59.726 57.895 8.23 0.00 44.64 5.19
1565 2977 1.273887 CGCGATTCAAGATGACGCC 59.726 57.895 0.00 0.00 45.15 5.68
1566 2978 1.273887 GCGATTCAAGATGACGCCG 59.726 57.895 0.00 0.00 42.79 6.46
1567 2979 1.273887 CGATTCAAGATGACGCCGC 59.726 57.895 0.00 0.00 0.00 6.53
1568 2980 1.148157 CGATTCAAGATGACGCCGCT 61.148 55.000 0.00 0.00 0.00 5.52
1569 2981 0.579156 GATTCAAGATGACGCCGCTC 59.421 55.000 0.00 0.00 0.00 5.03
1570 2982 0.811616 ATTCAAGATGACGCCGCTCC 60.812 55.000 0.00 0.00 0.00 4.70
1571 2983 1.888436 TTCAAGATGACGCCGCTCCT 61.888 55.000 0.00 0.00 0.00 3.69
1572 2984 2.169789 CAAGATGACGCCGCTCCTG 61.170 63.158 0.00 0.00 0.00 3.86
1573 2985 3.376935 AAGATGACGCCGCTCCTGG 62.377 63.158 0.00 0.00 0.00 4.45
1574 2986 4.899239 GATGACGCCGCTCCTGGG 62.899 72.222 0.00 0.00 0.00 4.45
1581 2993 4.162690 CCGCTCCTGGGCCTACAC 62.163 72.222 4.53 0.00 0.00 2.90
1582 2994 4.162690 CGCTCCTGGGCCTACACC 62.163 72.222 4.53 0.00 0.00 4.16
1583 2995 4.162690 GCTCCTGGGCCTACACCG 62.163 72.222 4.53 0.00 0.00 4.94
1584 2996 3.470888 CTCCTGGGCCTACACCGG 61.471 72.222 4.53 0.00 0.00 5.28
1585 2997 3.976490 CTCCTGGGCCTACACCGGA 62.976 68.421 9.46 0.00 36.43 5.14
1586 2998 3.470888 CCTGGGCCTACACCGGAG 61.471 72.222 9.46 1.26 36.43 4.63
1587 2999 4.162690 CTGGGCCTACACCGGAGC 62.163 72.222 9.46 2.15 36.43 4.70
1589 3001 3.712907 GGGCCTACACCGGAGCAA 61.713 66.667 9.46 0.00 0.00 3.91
1590 3002 2.349755 GGCCTACACCGGAGCAAA 59.650 61.111 9.46 0.00 0.00 3.68
1591 3003 1.302993 GGCCTACACCGGAGCAAAA 60.303 57.895 9.46 0.00 0.00 2.44
1592 3004 1.305930 GGCCTACACCGGAGCAAAAG 61.306 60.000 9.46 0.00 0.00 2.27
1593 3005 1.305930 GCCTACACCGGAGCAAAAGG 61.306 60.000 9.46 7.14 0.00 3.11
1594 3006 0.323629 CCTACACCGGAGCAAAAGGA 59.676 55.000 9.46 0.00 0.00 3.36
1595 3007 1.439679 CTACACCGGAGCAAAAGGAC 58.560 55.000 9.46 0.00 0.00 3.85
1596 3008 1.002087 CTACACCGGAGCAAAAGGACT 59.998 52.381 9.46 0.00 0.00 3.85
1597 3009 0.182775 ACACCGGAGCAAAAGGACTT 59.817 50.000 9.46 0.00 0.00 3.01
1598 3010 1.418637 ACACCGGAGCAAAAGGACTTA 59.581 47.619 9.46 0.00 0.00 2.24
1599 3011 2.076863 CACCGGAGCAAAAGGACTTAG 58.923 52.381 9.46 0.00 0.00 2.18
1600 3012 1.087501 CCGGAGCAAAAGGACTTAGC 58.912 55.000 0.00 2.35 0.00 3.09
1601 3013 1.610624 CCGGAGCAAAAGGACTTAGCA 60.611 52.381 0.00 0.00 0.00 3.49
1602 3014 2.359900 CGGAGCAAAAGGACTTAGCAT 58.640 47.619 10.64 0.00 0.00 3.79
1603 3015 2.749621 CGGAGCAAAAGGACTTAGCATT 59.250 45.455 10.64 0.00 0.00 3.56
1604 3016 3.938963 CGGAGCAAAAGGACTTAGCATTA 59.061 43.478 10.64 0.00 0.00 1.90
1605 3017 4.576463 CGGAGCAAAAGGACTTAGCATTAT 59.424 41.667 10.64 0.00 0.00 1.28
1606 3018 5.066505 CGGAGCAAAAGGACTTAGCATTATT 59.933 40.000 10.64 0.00 0.00 1.40
1607 3019 6.260050 CGGAGCAAAAGGACTTAGCATTATTA 59.740 38.462 10.64 0.00 0.00 0.98
1608 3020 7.041098 CGGAGCAAAAGGACTTAGCATTATTAT 60.041 37.037 10.64 0.00 0.00 1.28
1609 3021 8.293157 GGAGCAAAAGGACTTAGCATTATTATC 58.707 37.037 10.64 0.71 0.00 1.75
1610 3022 8.171164 AGCAAAAGGACTTAGCATTATTATCC 57.829 34.615 10.64 0.00 0.00 2.59
1611 3023 7.231519 AGCAAAAGGACTTAGCATTATTATCCC 59.768 37.037 10.64 0.00 0.00 3.85
1612 3024 7.231519 GCAAAAGGACTTAGCATTATTATCCCT 59.768 37.037 5.02 0.00 0.00 4.20
1613 3025 8.571336 CAAAAGGACTTAGCATTATTATCCCTG 58.429 37.037 0.00 0.00 0.00 4.45
1614 3026 7.394144 AAGGACTTAGCATTATTATCCCTGT 57.606 36.000 0.00 0.00 0.00 4.00
1615 3027 8.506196 AAGGACTTAGCATTATTATCCCTGTA 57.494 34.615 0.00 0.00 0.00 2.74
1616 3028 8.140112 AGGACTTAGCATTATTATCCCTGTAG 57.860 38.462 0.00 0.00 0.00 2.74
1617 3029 7.735321 AGGACTTAGCATTATTATCCCTGTAGT 59.265 37.037 0.00 0.00 0.00 2.73
1618 3030 8.035984 GGACTTAGCATTATTATCCCTGTAGTC 58.964 40.741 0.00 0.00 0.00 2.59
1619 3031 8.728596 ACTTAGCATTATTATCCCTGTAGTCT 57.271 34.615 0.00 0.00 0.00 3.24
1620 3032 9.824216 ACTTAGCATTATTATCCCTGTAGTCTA 57.176 33.333 0.00 0.00 0.00 2.59
1622 3034 9.824216 TTAGCATTATTATCCCTGTAGTCTAGT 57.176 33.333 0.00 0.00 0.00 2.57
1623 3035 8.728596 AGCATTATTATCCCTGTAGTCTAGTT 57.271 34.615 0.00 0.00 0.00 2.24
1624 3036 8.589338 AGCATTATTATCCCTGTAGTCTAGTTG 58.411 37.037 0.00 0.00 0.00 3.16
1625 3037 8.585881 GCATTATTATCCCTGTAGTCTAGTTGA 58.414 37.037 0.00 0.00 0.00 3.18
1628 3040 7.973048 ATTATCCCTGTAGTCTAGTTGAACA 57.027 36.000 0.00 0.00 0.00 3.18
1629 3041 7.973048 TTATCCCTGTAGTCTAGTTGAACAT 57.027 36.000 0.00 0.00 0.00 2.71
1630 3042 6.875972 ATCCCTGTAGTCTAGTTGAACATT 57.124 37.500 0.00 0.00 0.00 2.71
1631 3043 6.681729 TCCCTGTAGTCTAGTTGAACATTT 57.318 37.500 0.00 0.00 0.00 2.32
1632 3044 7.786046 TCCCTGTAGTCTAGTTGAACATTTA 57.214 36.000 0.00 0.00 0.00 1.40
1633 3045 7.837863 TCCCTGTAGTCTAGTTGAACATTTAG 58.162 38.462 0.00 0.00 0.00 1.85
1634 3046 7.042335 CCCTGTAGTCTAGTTGAACATTTAGG 58.958 42.308 0.00 0.00 0.00 2.69
1635 3047 7.042335 CCTGTAGTCTAGTTGAACATTTAGGG 58.958 42.308 0.00 0.00 0.00 3.53
1636 3048 6.942976 TGTAGTCTAGTTGAACATTTAGGGG 58.057 40.000 0.00 0.00 0.00 4.79
1637 3049 5.437191 AGTCTAGTTGAACATTTAGGGGG 57.563 43.478 0.00 0.00 0.00 5.40
1638 3050 3.945921 GTCTAGTTGAACATTTAGGGGGC 59.054 47.826 0.00 0.00 0.00 5.80
1639 3051 3.850173 TCTAGTTGAACATTTAGGGGGCT 59.150 43.478 0.00 0.00 0.00 5.19
1640 3052 2.807676 AGTTGAACATTTAGGGGGCTG 58.192 47.619 0.00 0.00 0.00 4.85
1641 3053 2.378547 AGTTGAACATTTAGGGGGCTGA 59.621 45.455 0.00 0.00 0.00 4.26
1642 3054 2.755103 GTTGAACATTTAGGGGGCTGAG 59.245 50.000 0.00 0.00 0.00 3.35
1643 3055 1.340991 TGAACATTTAGGGGGCTGAGC 60.341 52.381 0.00 0.00 0.00 4.26
1644 3056 0.704076 AACATTTAGGGGGCTGAGCA 59.296 50.000 6.82 0.00 0.00 4.26
1645 3057 0.704076 ACATTTAGGGGGCTGAGCAA 59.296 50.000 6.82 0.00 0.00 3.91
1646 3058 1.106285 CATTTAGGGGGCTGAGCAAC 58.894 55.000 6.82 0.00 0.00 4.17
1647 3059 0.033109 ATTTAGGGGGCTGAGCAACC 60.033 55.000 6.82 7.90 0.00 3.77
1648 3060 2.150014 TTTAGGGGGCTGAGCAACCC 62.150 60.000 23.88 23.88 44.17 4.11
1652 3064 4.432741 GGGCTGAGCAACCCCTCC 62.433 72.222 6.82 0.00 40.56 4.30
1653 3065 3.334054 GGCTGAGCAACCCCTCCT 61.334 66.667 6.82 0.00 0.00 3.69
1654 3066 1.995626 GGCTGAGCAACCCCTCCTA 60.996 63.158 6.82 0.00 0.00 2.94
1655 3067 1.348775 GGCTGAGCAACCCCTCCTAT 61.349 60.000 6.82 0.00 0.00 2.57
1656 3068 0.179034 GCTGAGCAACCCCTCCTATG 60.179 60.000 0.00 0.00 0.00 2.23
1657 3069 0.179034 CTGAGCAACCCCTCCTATGC 60.179 60.000 0.00 0.00 39.06 3.14
1658 3070 4.508065 AGCAACCCCTCCTATGCT 57.492 55.556 0.00 0.00 43.90 3.79
1659 3071 2.225792 AGCAACCCCTCCTATGCTC 58.774 57.895 0.00 0.00 45.49 4.26
1660 3072 1.227674 GCAACCCCTCCTATGCTCG 60.228 63.158 0.00 0.00 35.93 5.03
1661 3073 1.227674 CAACCCCTCCTATGCTCGC 60.228 63.158 0.00 0.00 0.00 5.03
1662 3074 1.383248 AACCCCTCCTATGCTCGCT 60.383 57.895 0.00 0.00 0.00 4.93
1663 3075 1.403687 AACCCCTCCTATGCTCGCTC 61.404 60.000 0.00 0.00 0.00 5.03
1664 3076 1.532794 CCCCTCCTATGCTCGCTCT 60.533 63.158 0.00 0.00 0.00 4.09
1665 3077 1.664873 CCCTCCTATGCTCGCTCTG 59.335 63.158 0.00 0.00 0.00 3.35
1666 3078 1.112315 CCCTCCTATGCTCGCTCTGT 61.112 60.000 0.00 0.00 0.00 3.41
1667 3079 1.610363 CCTCCTATGCTCGCTCTGTA 58.390 55.000 0.00 0.00 0.00 2.74
1668 3080 2.166829 CCTCCTATGCTCGCTCTGTAT 58.833 52.381 0.00 0.00 0.00 2.29
1669 3081 2.163412 CCTCCTATGCTCGCTCTGTATC 59.837 54.545 0.00 0.00 0.00 2.24
1670 3082 2.816672 CTCCTATGCTCGCTCTGTATCA 59.183 50.000 0.00 0.00 0.00 2.15
1671 3083 2.554462 TCCTATGCTCGCTCTGTATCAC 59.446 50.000 0.00 0.00 0.00 3.06
1672 3084 2.579541 CTATGCTCGCTCTGTATCACG 58.420 52.381 0.00 0.00 0.00 4.35
1673 3085 0.031314 ATGCTCGCTCTGTATCACGG 59.969 55.000 0.00 0.00 0.00 4.94
1674 3086 1.946650 GCTCGCTCTGTATCACGGC 60.947 63.158 0.00 0.00 0.00 5.68
1675 3087 1.299468 CTCGCTCTGTATCACGGCC 60.299 63.158 0.00 0.00 0.00 6.13
1676 3088 2.004808 CTCGCTCTGTATCACGGCCA 62.005 60.000 2.24 0.00 0.00 5.36
1677 3089 1.878522 CGCTCTGTATCACGGCCAC 60.879 63.158 2.24 0.00 0.00 5.01
1679 3091 1.878522 CTCTGTATCACGGCCACGC 60.879 63.158 2.24 0.00 46.04 5.34
1680 3092 2.890474 CTGTATCACGGCCACGCC 60.890 66.667 2.24 0.00 46.75 5.68
1689 3101 2.594592 GGCCACGCCTTCTTGTGT 60.595 61.111 0.00 0.00 46.69 3.72
1690 3102 1.302192 GGCCACGCCTTCTTGTGTA 60.302 57.895 0.00 0.00 46.69 2.90
1691 3103 0.676782 GGCCACGCCTTCTTGTGTAT 60.677 55.000 0.00 0.00 46.69 2.29
1692 3104 0.447801 GCCACGCCTTCTTGTGTATG 59.552 55.000 0.00 0.00 34.28 2.39
1693 3105 1.943968 GCCACGCCTTCTTGTGTATGA 60.944 52.381 0.00 0.00 34.28 2.15
1694 3106 2.002586 CCACGCCTTCTTGTGTATGAG 58.997 52.381 0.00 0.00 34.28 2.90
1695 3107 2.353704 CCACGCCTTCTTGTGTATGAGA 60.354 50.000 0.00 0.00 34.28 3.27
1696 3108 2.668457 CACGCCTTCTTGTGTATGAGAC 59.332 50.000 0.00 0.00 0.00 3.36
1697 3109 2.271800 CGCCTTCTTGTGTATGAGACC 58.728 52.381 0.00 0.00 0.00 3.85
1698 3110 2.271800 GCCTTCTTGTGTATGAGACCG 58.728 52.381 0.00 0.00 0.00 4.79
1699 3111 2.353803 GCCTTCTTGTGTATGAGACCGT 60.354 50.000 0.00 0.00 0.00 4.83
1700 3112 3.254060 CCTTCTTGTGTATGAGACCGTG 58.746 50.000 0.00 0.00 0.00 4.94
1701 3113 3.056821 CCTTCTTGTGTATGAGACCGTGA 60.057 47.826 0.00 0.00 0.00 4.35
1702 3114 4.382040 CCTTCTTGTGTATGAGACCGTGAT 60.382 45.833 0.00 0.00 0.00 3.06
1703 3115 4.110036 TCTTGTGTATGAGACCGTGATG 57.890 45.455 0.00 0.00 0.00 3.07
1704 3116 2.293677 TGTGTATGAGACCGTGATGC 57.706 50.000 0.00 0.00 0.00 3.91
1705 3117 1.134818 TGTGTATGAGACCGTGATGCC 60.135 52.381 0.00 0.00 0.00 4.40
1706 3118 0.102300 TGTATGAGACCGTGATGCCG 59.898 55.000 0.00 0.00 0.00 5.69
1707 3119 0.102481 GTATGAGACCGTGATGCCGT 59.898 55.000 0.00 0.00 0.00 5.68
1708 3120 0.821517 TATGAGACCGTGATGCCGTT 59.178 50.000 0.00 0.00 0.00 4.44
1709 3121 0.036388 ATGAGACCGTGATGCCGTTT 60.036 50.000 0.00 0.00 0.00 3.60
1710 3122 0.250124 TGAGACCGTGATGCCGTTTT 60.250 50.000 0.00 0.00 0.00 2.43
1711 3123 0.165944 GAGACCGTGATGCCGTTTTG 59.834 55.000 0.00 0.00 0.00 2.44
1712 3124 0.534203 AGACCGTGATGCCGTTTTGT 60.534 50.000 0.00 0.00 0.00 2.83
1713 3125 1.149987 GACCGTGATGCCGTTTTGTA 58.850 50.000 0.00 0.00 0.00 2.41
1714 3126 1.735571 GACCGTGATGCCGTTTTGTAT 59.264 47.619 0.00 0.00 0.00 2.29
1715 3127 1.466950 ACCGTGATGCCGTTTTGTATG 59.533 47.619 0.00 0.00 0.00 2.39
1716 3128 1.466950 CCGTGATGCCGTTTTGTATGT 59.533 47.619 0.00 0.00 0.00 2.29
1717 3129 2.095466 CCGTGATGCCGTTTTGTATGTT 60.095 45.455 0.00 0.00 0.00 2.71
1718 3130 3.160545 CGTGATGCCGTTTTGTATGTTC 58.839 45.455 0.00 0.00 0.00 3.18
1719 3131 3.120338 CGTGATGCCGTTTTGTATGTTCT 60.120 43.478 0.00 0.00 0.00 3.01
1720 3132 4.612712 CGTGATGCCGTTTTGTATGTTCTT 60.613 41.667 0.00 0.00 0.00 2.52
1721 3133 4.851558 GTGATGCCGTTTTGTATGTTCTTC 59.148 41.667 0.00 0.00 0.00 2.87
1722 3134 3.907894 TGCCGTTTTGTATGTTCTTCC 57.092 42.857 0.00 0.00 0.00 3.46
1723 3135 3.482436 TGCCGTTTTGTATGTTCTTCCT 58.518 40.909 0.00 0.00 0.00 3.36
1724 3136 3.886505 TGCCGTTTTGTATGTTCTTCCTT 59.113 39.130 0.00 0.00 0.00 3.36
1725 3137 4.023536 TGCCGTTTTGTATGTTCTTCCTTC 60.024 41.667 0.00 0.00 0.00 3.46
1726 3138 4.215613 GCCGTTTTGTATGTTCTTCCTTCT 59.784 41.667 0.00 0.00 0.00 2.85
1727 3139 5.410439 GCCGTTTTGTATGTTCTTCCTTCTA 59.590 40.000 0.00 0.00 0.00 2.10
1728 3140 6.093633 GCCGTTTTGTATGTTCTTCCTTCTAT 59.906 38.462 0.00 0.00 0.00 1.98
1729 3141 7.676572 GCCGTTTTGTATGTTCTTCCTTCTATC 60.677 40.741 0.00 0.00 0.00 2.08
1730 3142 7.333423 CCGTTTTGTATGTTCTTCCTTCTATCA 59.667 37.037 0.00 0.00 0.00 2.15
1731 3143 8.717821 CGTTTTGTATGTTCTTCCTTCTATCAA 58.282 33.333 0.00 0.00 0.00 2.57
1734 3146 7.792374 TGTATGTTCTTCCTTCTATCAATGC 57.208 36.000 0.00 0.00 0.00 3.56
1735 3147 7.337938 TGTATGTTCTTCCTTCTATCAATGCA 58.662 34.615 0.00 0.00 0.00 3.96
1736 3148 7.828717 TGTATGTTCTTCCTTCTATCAATGCAA 59.171 33.333 0.00 0.00 0.00 4.08
1737 3149 7.893124 ATGTTCTTCCTTCTATCAATGCAAT 57.107 32.000 0.00 0.00 0.00 3.56
1738 3150 7.092137 TGTTCTTCCTTCTATCAATGCAATG 57.908 36.000 0.00 0.00 0.00 2.82
1739 3151 6.885918 TGTTCTTCCTTCTATCAATGCAATGA 59.114 34.615 6.97 6.97 0.00 2.57
1740 3152 7.558807 TGTTCTTCCTTCTATCAATGCAATGAT 59.441 33.333 20.55 20.55 42.52 2.45
1741 3153 9.060347 GTTCTTCCTTCTATCAATGCAATGATA 57.940 33.333 20.58 20.58 40.44 2.15
1742 3154 9.803507 TTCTTCCTTCTATCAATGCAATGATAT 57.196 29.630 21.75 4.19 40.51 1.63
1743 3155 9.227777 TCTTCCTTCTATCAATGCAATGATATG 57.772 33.333 21.75 16.08 40.51 1.78
1744 3156 7.387119 TCCTTCTATCAATGCAATGATATGC 57.613 36.000 21.75 0.00 46.58 3.14
1745 3157 7.173032 TCCTTCTATCAATGCAATGATATGCT 58.827 34.615 21.75 2.78 46.54 3.79
1746 3158 8.323567 TCCTTCTATCAATGCAATGATATGCTA 58.676 33.333 21.75 4.72 46.54 3.49
1747 3159 8.396390 CCTTCTATCAATGCAATGATATGCTAC 58.604 37.037 21.75 0.00 46.54 3.58
1748 3160 7.854557 TCTATCAATGCAATGATATGCTACC 57.145 36.000 21.75 0.00 46.54 3.18
1749 3161 7.396418 TCTATCAATGCAATGATATGCTACCA 58.604 34.615 21.75 2.73 46.54 3.25
1750 3162 8.050930 TCTATCAATGCAATGATATGCTACCAT 58.949 33.333 21.75 0.00 46.54 3.55
1751 3163 6.262193 TCAATGCAATGATATGCTACCATG 57.738 37.500 0.00 0.00 46.54 3.66
1752 3164 5.184287 TCAATGCAATGATATGCTACCATGG 59.816 40.000 11.19 11.19 46.54 3.66
1753 3165 4.103013 TGCAATGATATGCTACCATGGT 57.897 40.909 23.55 23.55 46.54 3.55
1754 3166 3.822167 TGCAATGATATGCTACCATGGTG 59.178 43.478 28.17 17.52 46.54 4.17
1755 3167 3.822735 GCAATGATATGCTACCATGGTGT 59.177 43.478 28.17 12.70 43.06 4.16
1756 3168 5.003160 GCAATGATATGCTACCATGGTGTA 58.997 41.667 28.17 16.40 43.06 2.90
1757 3169 5.649395 GCAATGATATGCTACCATGGTGTAT 59.351 40.000 28.17 21.45 43.06 2.29
1758 3170 6.151648 GCAATGATATGCTACCATGGTGTATT 59.848 38.462 28.17 12.01 43.06 1.89
1759 3171 7.627088 GCAATGATATGCTACCATGGTGTATTC 60.627 40.741 28.17 15.64 43.06 1.75
1760 3172 5.478407 TGATATGCTACCATGGTGTATTCG 58.522 41.667 28.17 9.32 32.85 3.34
1761 3173 5.245075 TGATATGCTACCATGGTGTATTCGA 59.755 40.000 28.17 4.19 32.85 3.71
1762 3174 3.452755 TGCTACCATGGTGTATTCGAG 57.547 47.619 28.17 15.47 0.00 4.04
1763 3175 3.028130 TGCTACCATGGTGTATTCGAGA 58.972 45.455 28.17 2.56 0.00 4.04
1764 3176 3.449377 TGCTACCATGGTGTATTCGAGAA 59.551 43.478 28.17 6.39 0.00 2.87
1765 3177 4.081365 TGCTACCATGGTGTATTCGAGAAA 60.081 41.667 28.17 1.17 0.00 2.52
1766 3178 4.873827 GCTACCATGGTGTATTCGAGAAAA 59.126 41.667 28.17 0.95 0.00 2.29
1767 3179 5.353123 GCTACCATGGTGTATTCGAGAAAAA 59.647 40.000 28.17 0.47 0.00 1.94
1768 3180 5.622770 ACCATGGTGTATTCGAGAAAAAC 57.377 39.130 18.99 0.00 0.00 2.43
1779 3191 7.707464 TGTATTCGAGAAAAACTGTGTGTTCTA 59.293 33.333 2.09 0.00 38.03 2.10
1780 3192 6.971527 TTCGAGAAAAACTGTGTGTTCTAA 57.028 33.333 2.09 0.00 38.03 2.10
1782 3194 7.000575 TCGAGAAAAACTGTGTGTTCTAAAG 57.999 36.000 2.09 0.00 38.03 1.85
1798 3210 0.955919 AAAGCAGTGCCTTACGCCTC 60.956 55.000 12.58 0.00 36.24 4.70
1827 3239 6.385649 AAAGAACAAAGATGAAAACGGCTA 57.614 33.333 0.00 0.00 0.00 3.93
1844 3256 4.682860 ACGGCTATAATTTTATCCGTCACG 59.317 41.667 15.28 0.00 38.56 4.35
1900 3322 3.900966 TGATCATGTTGGGTCAGAGAG 57.099 47.619 0.00 0.00 0.00 3.20
1906 3328 4.532126 TCATGTTGGGTCAGAGAGTAATGT 59.468 41.667 0.00 0.00 0.00 2.71
1919 3341 8.148351 TCAGAGAGTAATGTATTTTATTCGGGG 58.852 37.037 0.00 0.00 0.00 5.73
1945 3370 8.870879 GTTGCTACTTTCTATAACGAGAAATGT 58.129 33.333 0.00 3.68 42.93 2.71
1962 3390 8.661257 CGAGAAATGTATATGATCTACTCGAGT 58.339 37.037 23.66 23.66 43.57 4.18
1979 3407 1.377333 GTGCTTGGGTAGAGGGCAC 60.377 63.158 0.00 0.00 44.53 5.01
2003 3451 6.378280 ACAAAATCCCTAATTCACTAAGCAGG 59.622 38.462 0.00 0.00 0.00 4.85
2014 3462 2.478894 CACTAAGCAGGGTACAACGTTG 59.521 50.000 26.20 26.20 0.00 4.10
2015 3463 1.463444 CTAAGCAGGGTACAACGTTGC 59.537 52.381 27.61 13.10 35.09 4.17
2016 3464 0.464735 AAGCAGGGTACAACGTTGCA 60.465 50.000 27.61 13.25 37.24 4.08
2018 3466 0.317519 GCAGGGTACAACGTTGCAAC 60.318 55.000 27.61 23.52 34.99 4.17
2020 3468 1.161563 AGGGTACAACGTTGCAACCG 61.162 55.000 31.32 19.41 38.02 4.44
2022 3470 1.438562 GGTACAACGTTGCAACCGGT 61.439 55.000 27.77 19.40 30.81 5.28
2036 3485 3.192633 GCAACCGGTGGATAAATCAAACT 59.807 43.478 15.02 0.00 0.00 2.66
2064 3513 2.352814 GGCTCCGCGATACTGTTATGAT 60.353 50.000 8.23 0.00 0.00 2.45
2065 3514 2.663602 GCTCCGCGATACTGTTATGATG 59.336 50.000 8.23 0.00 0.00 3.07
2066 3515 3.857383 GCTCCGCGATACTGTTATGATGT 60.857 47.826 8.23 0.00 0.00 3.06
2088 3537 9.738832 GATGTTAAGTAAGTTTTGTTTAGGCAA 57.261 29.630 0.00 0.00 0.00 4.52
2135 3584 5.329493 TCTCATGTACTCAACGATGTAACG 58.671 41.667 0.00 0.00 39.31 3.18
2162 3611 6.203723 TGCCACAATTTTAAATAAAGTGCCAC 59.796 34.615 10.35 0.00 0.00 5.01
2164 3613 6.642950 CCACAATTTTAAATAAAGTGCCACGA 59.357 34.615 10.35 0.00 0.00 4.35
2179 3628 2.162681 CCACGAGGCTTTCCTTCAAAT 58.837 47.619 0.00 0.00 44.46 2.32
2181 3630 3.375299 CCACGAGGCTTTCCTTCAAATAG 59.625 47.826 0.00 0.00 44.46 1.73
2185 3634 5.768164 ACGAGGCTTTCCTTCAAATAGAAAA 59.232 36.000 0.00 0.00 44.46 2.29
2186 3635 6.264518 ACGAGGCTTTCCTTCAAATAGAAAAA 59.735 34.615 0.00 0.00 44.46 1.94
2187 3636 7.039714 ACGAGGCTTTCCTTCAAATAGAAAAAT 60.040 33.333 0.00 0.00 44.46 1.82
2188 3637 8.458843 CGAGGCTTTCCTTCAAATAGAAAAATA 58.541 33.333 0.00 0.00 44.46 1.40
2201 3650 9.046296 CAAATAGAAAAATAGATGTAGCTCCGT 57.954 33.333 0.00 0.00 0.00 4.69
2275 3724 9.856162 ATAAACAACTAAAACCAAGGAAGAGTA 57.144 29.630 0.00 0.00 0.00 2.59
2280 3729 4.317530 AAAACCAAGGAAGAGTATCCCC 57.682 45.455 0.00 0.00 40.59 4.81
2285 3734 1.108132 AGGAAGAGTATCCCCGCGTC 61.108 60.000 4.92 0.00 40.59 5.19
2286 3735 1.008767 GAAGAGTATCCCCGCGTCG 60.009 63.158 4.92 0.00 33.66 5.12
2287 3736 1.722636 GAAGAGTATCCCCGCGTCGT 61.723 60.000 4.92 0.00 33.66 4.34
2288 3737 1.722636 AAGAGTATCCCCGCGTCGTC 61.723 60.000 4.92 0.00 33.66 4.20
2289 3738 3.191637 GAGTATCCCCGCGTCGTCC 62.192 68.421 4.92 0.00 0.00 4.79
2290 3739 4.619140 GTATCCCCGCGTCGTCCG 62.619 72.222 4.92 0.00 40.40 4.79
2333 3782 3.181412 TGGTTTTCCTATTTGCTCCCCTT 60.181 43.478 0.00 0.00 41.38 3.95
2334 3783 3.195610 GGTTTTCCTATTTGCTCCCCTTG 59.804 47.826 0.00 0.00 36.94 3.61
2335 3784 2.143876 TTCCTATTTGCTCCCCTTGC 57.856 50.000 0.00 0.00 0.00 4.01
2336 3785 1.298953 TCCTATTTGCTCCCCTTGCT 58.701 50.000 0.00 0.00 0.00 3.91
2337 3786 1.064463 TCCTATTTGCTCCCCTTGCTG 60.064 52.381 0.00 0.00 0.00 4.41
2339 3788 0.684153 TATTTGCTCCCCTTGCTGCC 60.684 55.000 0.00 0.00 0.00 4.85
2388 3854 4.785453 GGCAGGACTTCAGGCGGG 62.785 72.222 0.00 0.00 0.00 6.13
2390 3856 2.750350 CAGGACTTCAGGCGGGTT 59.250 61.111 0.00 0.00 0.00 4.11
2394 3860 1.515521 GGACTTCAGGCGGGTTTGTG 61.516 60.000 0.00 0.00 0.00 3.33
2401 3867 3.361977 GCGGGTTTGTGTCGGCAT 61.362 61.111 0.00 0.00 0.00 4.40
2406 3872 1.453155 GGTTTGTGTCGGCATGAGAT 58.547 50.000 0.00 0.00 0.00 2.75
2408 3874 2.609459 GGTTTGTGTCGGCATGAGATAG 59.391 50.000 0.00 0.00 0.00 2.08
2412 3878 2.359214 TGTGTCGGCATGAGATAGAGAC 59.641 50.000 0.00 0.00 0.00 3.36
2416 3882 0.387878 GGCATGAGATAGAGACGGCG 60.388 60.000 4.80 4.80 0.00 6.46
2418 3884 0.955178 CATGAGATAGAGACGGCGGT 59.045 55.000 13.24 0.00 0.00 5.68
2423 3889 2.955751 GATAGAGACGGCGGTGTGGC 62.956 65.000 13.24 0.00 40.44 5.01
2461 3927 0.250252 TGAAGCAATGCAGACGTGGA 60.250 50.000 8.35 0.00 0.00 4.02
2462 3928 0.874390 GAAGCAATGCAGACGTGGAA 59.126 50.000 8.35 0.00 0.00 3.53
2463 3929 0.593128 AAGCAATGCAGACGTGGAAC 59.407 50.000 8.35 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
263 988 6.801575 TGTTTTTCAAAGGAGCGAATAAGTT 58.198 32.000 0.00 0.00 0.00 2.66
272 998 9.914131 AATTCTAGTTATGTTTTTCAAAGGAGC 57.086 29.630 0.00 0.00 0.00 4.70
415 1650 8.500773 AGCATTTTGAATTGCTCATAACTTTTG 58.499 29.630 7.17 0.00 45.83 2.44
533 1907 5.195146 TCAGGGAAAGTACTAGTGGAGGATA 59.805 44.000 5.39 0.00 0.00 2.59
642 2032 1.867233 CGGCAAAGGATCCATCTTACG 59.133 52.381 15.82 7.42 0.00 3.18
714 2104 1.886542 GGAATCACCACACAAGGGAAC 59.113 52.381 0.00 0.00 38.79 3.62
723 2113 4.321966 TGGCGCGGAATCACCACA 62.322 61.111 8.83 0.00 38.90 4.17
724 2114 3.799755 GTGGCGCGGAATCACCAC 61.800 66.667 14.15 14.15 45.22 4.16
725 2115 4.015406 AGTGGCGCGGAATCACCA 62.015 61.111 8.83 1.70 38.90 4.17
726 2116 3.499737 CAGTGGCGCGGAATCACC 61.500 66.667 8.83 0.00 32.29 4.02
727 2117 4.166011 GCAGTGGCGCGGAATCAC 62.166 66.667 8.83 3.06 0.00 3.06
758 2148 0.464735 ACAGGTTTTGCAGTGGCGTA 60.465 50.000 0.00 0.00 45.35 4.42
777 2167 1.332195 CTGAGAGTGCATATCCGGGA 58.668 55.000 0.00 0.00 0.00 5.14
782 2172 2.603412 CGACGGACTGAGAGTGCATATC 60.603 54.545 0.00 0.00 36.23 1.63
820 2210 1.725557 GACAGCAGCTCGGTATCGGA 61.726 60.000 0.00 0.00 36.95 4.55
832 2222 4.147449 TGGCCGATCCGACAGCAG 62.147 66.667 0.00 0.00 37.80 4.24
863 2253 8.019656 TGTTCCTTGAGGTAGATTATTACTCC 57.980 38.462 0.00 0.00 36.34 3.85
864 2254 9.315525 GTTGTTCCTTGAGGTAGATTATTACTC 57.684 37.037 0.00 0.00 36.34 2.59
865 2255 8.822805 TGTTGTTCCTTGAGGTAGATTATTACT 58.177 33.333 0.00 0.00 36.34 2.24
866 2256 9.614792 ATGTTGTTCCTTGAGGTAGATTATTAC 57.385 33.333 0.00 0.00 36.34 1.89
869 2259 9.838339 CTTATGTTGTTCCTTGAGGTAGATTAT 57.162 33.333 0.00 0.00 36.34 1.28
870 2260 7.769044 GCTTATGTTGTTCCTTGAGGTAGATTA 59.231 37.037 0.00 0.00 36.34 1.75
871 2261 6.599638 GCTTATGTTGTTCCTTGAGGTAGATT 59.400 38.462 0.00 0.00 36.34 2.40
872 2262 6.069963 AGCTTATGTTGTTCCTTGAGGTAGAT 60.070 38.462 0.00 0.00 36.34 1.98
873 2263 5.248477 AGCTTATGTTGTTCCTTGAGGTAGA 59.752 40.000 0.00 0.00 36.34 2.59
874 2264 5.491982 AGCTTATGTTGTTCCTTGAGGTAG 58.508 41.667 0.00 0.00 36.34 3.18
875 2265 5.012664 TGAGCTTATGTTGTTCCTTGAGGTA 59.987 40.000 0.00 0.00 36.34 3.08
892 2286 3.031013 TGATGGAGGACGATTGAGCTTA 58.969 45.455 0.00 0.00 0.00 3.09
903 2297 0.179111 TGACGCGATTGATGGAGGAC 60.179 55.000 15.93 0.00 0.00 3.85
935 2329 2.209758 GGGGGAGAAAGGAAGGAAGAT 58.790 52.381 0.00 0.00 0.00 2.40
1226 2626 3.626924 ACTTGACGCCGGGAAGCT 61.627 61.111 2.18 0.00 0.00 3.74
1263 2663 0.315251 GAAACTGCAGGAAGTTGGCC 59.685 55.000 19.93 0.00 40.28 5.36
1343 2743 1.959899 CTCACACATGAAGTCGCCGC 61.960 60.000 0.00 0.00 33.30 6.53
1460 2863 1.261619 GCTGTCCCGATTAATCTTGCG 59.738 52.381 13.45 0.84 0.00 4.85
1483 2886 1.485066 TCTCTTAATCCGAACCAGGGC 59.515 52.381 0.00 0.00 0.00 5.19
1484 2887 3.733337 CATCTCTTAATCCGAACCAGGG 58.267 50.000 0.00 0.00 0.00 4.45
1485 2888 3.134458 GCATCTCTTAATCCGAACCAGG 58.866 50.000 0.00 0.00 0.00 4.45
1486 2889 4.065321 AGCATCTCTTAATCCGAACCAG 57.935 45.455 0.00 0.00 0.00 4.00
1487 2890 4.501571 GCTAGCATCTCTTAATCCGAACCA 60.502 45.833 10.63 0.00 0.00 3.67
1522 2934 3.787001 GGGAGGCGGAAGAGGGTG 61.787 72.222 0.00 0.00 0.00 4.61
1523 2935 3.986116 GAGGGAGGCGGAAGAGGGT 62.986 68.421 0.00 0.00 0.00 4.34
1526 2938 2.042435 AGGAGGGAGGCGGAAGAG 60.042 66.667 0.00 0.00 0.00 2.85
1528 2940 3.474570 CCAGGAGGGAGGCGGAAG 61.475 72.222 0.00 0.00 40.01 3.46
1538 2950 3.680620 TTGAATCGCGGCCAGGAGG 62.681 63.158 6.13 0.00 38.23 4.30
1539 2951 2.125147 TTGAATCGCGGCCAGGAG 60.125 61.111 6.13 0.00 0.00 3.69
1540 2952 1.971505 ATCTTGAATCGCGGCCAGGA 61.972 55.000 6.13 8.37 0.00 3.86
1541 2953 1.524621 ATCTTGAATCGCGGCCAGG 60.525 57.895 6.13 2.59 0.00 4.45
1542 2954 0.811219 TCATCTTGAATCGCGGCCAG 60.811 55.000 6.13 0.00 0.00 4.85
1543 2955 1.089481 GTCATCTTGAATCGCGGCCA 61.089 55.000 6.13 0.00 0.00 5.36
1544 2956 1.643832 GTCATCTTGAATCGCGGCC 59.356 57.895 6.13 0.00 0.00 6.13
1545 2957 1.273887 CGTCATCTTGAATCGCGGC 59.726 57.895 6.13 0.00 0.00 6.53
1546 2958 1.273887 GCGTCATCTTGAATCGCGG 59.726 57.895 6.13 0.00 33.44 6.46
1547 2959 1.273887 GGCGTCATCTTGAATCGCG 59.726 57.895 0.00 0.00 41.08 5.87
1548 2960 1.273887 CGGCGTCATCTTGAATCGC 59.726 57.895 0.00 0.00 39.96 4.58
1549 2961 1.148157 AGCGGCGTCATCTTGAATCG 61.148 55.000 9.37 0.00 0.00 3.34
1550 2962 0.579156 GAGCGGCGTCATCTTGAATC 59.421 55.000 9.37 0.00 0.00 2.52
1551 2963 0.811616 GGAGCGGCGTCATCTTGAAT 60.812 55.000 9.37 0.00 0.00 2.57
1552 2964 1.447838 GGAGCGGCGTCATCTTGAA 60.448 57.895 9.37 0.00 0.00 2.69
1553 2965 2.184322 GGAGCGGCGTCATCTTGA 59.816 61.111 9.37 0.00 0.00 3.02
1554 2966 2.169789 CAGGAGCGGCGTCATCTTG 61.170 63.158 9.37 7.64 0.00 3.02
1555 2967 2.185350 CAGGAGCGGCGTCATCTT 59.815 61.111 9.37 0.00 0.00 2.40
1556 2968 3.842923 CCAGGAGCGGCGTCATCT 61.843 66.667 9.37 0.00 0.00 2.90
1557 2969 4.899239 CCCAGGAGCGGCGTCATC 62.899 72.222 9.37 4.47 0.00 2.92
1564 2976 4.162690 GTGTAGGCCCAGGAGCGG 62.163 72.222 0.00 0.00 0.00 5.52
1565 2977 4.162690 GGTGTAGGCCCAGGAGCG 62.163 72.222 0.00 0.00 0.00 5.03
1566 2978 4.162690 CGGTGTAGGCCCAGGAGC 62.163 72.222 0.00 0.00 0.00 4.70
1567 2979 3.470888 CCGGTGTAGGCCCAGGAG 61.471 72.222 0.00 0.00 0.00 3.69
1568 2980 3.976490 CTCCGGTGTAGGCCCAGGA 62.976 68.421 0.00 0.00 0.00 3.86
1569 2981 3.470888 CTCCGGTGTAGGCCCAGG 61.471 72.222 0.00 0.00 0.00 4.45
1570 2982 4.162690 GCTCCGGTGTAGGCCCAG 62.163 72.222 0.00 0.00 0.00 4.45
1572 2984 2.757980 TTTTGCTCCGGTGTAGGCCC 62.758 60.000 0.00 0.00 0.00 5.80
1573 2985 1.302993 TTTTGCTCCGGTGTAGGCC 60.303 57.895 0.00 0.00 0.00 5.19
1574 2986 1.305930 CCTTTTGCTCCGGTGTAGGC 61.306 60.000 0.00 0.16 0.00 3.93
1575 2987 0.323629 TCCTTTTGCTCCGGTGTAGG 59.676 55.000 0.00 5.64 0.00 3.18
1576 2988 1.002087 AGTCCTTTTGCTCCGGTGTAG 59.998 52.381 0.00 0.00 0.00 2.74
1577 2989 1.053424 AGTCCTTTTGCTCCGGTGTA 58.947 50.000 0.00 0.00 0.00 2.90
1578 2990 0.182775 AAGTCCTTTTGCTCCGGTGT 59.817 50.000 0.00 0.00 0.00 4.16
1579 2991 2.076863 CTAAGTCCTTTTGCTCCGGTG 58.923 52.381 0.00 0.00 0.00 4.94
1580 2992 1.610886 GCTAAGTCCTTTTGCTCCGGT 60.611 52.381 0.00 0.00 35.12 5.28
1581 2993 1.087501 GCTAAGTCCTTTTGCTCCGG 58.912 55.000 0.00 0.00 35.12 5.14
1582 2994 1.808411 TGCTAAGTCCTTTTGCTCCG 58.192 50.000 6.38 0.00 38.20 4.63
1583 2995 6.456795 AATAATGCTAAGTCCTTTTGCTCC 57.543 37.500 6.38 0.00 38.20 4.70
1584 2996 8.293157 GGATAATAATGCTAAGTCCTTTTGCTC 58.707 37.037 6.38 0.00 38.20 4.26
1585 2997 7.231519 GGGATAATAATGCTAAGTCCTTTTGCT 59.768 37.037 0.00 0.00 38.20 3.91
1586 2998 7.231519 AGGGATAATAATGCTAAGTCCTTTTGC 59.768 37.037 0.00 0.00 37.92 3.68
1587 2999 8.571336 CAGGGATAATAATGCTAAGTCCTTTTG 58.429 37.037 0.00 0.00 0.00 2.44
1588 3000 8.282256 ACAGGGATAATAATGCTAAGTCCTTTT 58.718 33.333 0.00 0.00 0.00 2.27
1589 3001 7.816411 ACAGGGATAATAATGCTAAGTCCTTT 58.184 34.615 0.00 0.00 0.00 3.11
1590 3002 7.394144 ACAGGGATAATAATGCTAAGTCCTT 57.606 36.000 0.00 0.00 0.00 3.36
1591 3003 7.735321 ACTACAGGGATAATAATGCTAAGTCCT 59.265 37.037 0.00 0.00 0.00 3.85
1592 3004 7.908453 ACTACAGGGATAATAATGCTAAGTCC 58.092 38.462 0.00 0.00 0.00 3.85
1593 3005 8.808092 AGACTACAGGGATAATAATGCTAAGTC 58.192 37.037 0.00 0.00 0.00 3.01
1594 3006 8.728596 AGACTACAGGGATAATAATGCTAAGT 57.271 34.615 0.00 0.00 0.00 2.24
1596 3008 9.824216 ACTAGACTACAGGGATAATAATGCTAA 57.176 33.333 0.00 0.00 0.00 3.09
1597 3009 9.824216 AACTAGACTACAGGGATAATAATGCTA 57.176 33.333 0.00 0.00 0.00 3.49
1598 3010 8.589338 CAACTAGACTACAGGGATAATAATGCT 58.411 37.037 0.00 0.00 0.00 3.79
1599 3011 8.585881 TCAACTAGACTACAGGGATAATAATGC 58.414 37.037 0.00 0.00 0.00 3.56
1602 3014 9.483489 TGTTCAACTAGACTACAGGGATAATAA 57.517 33.333 0.00 0.00 0.00 1.40
1603 3015 9.656323 ATGTTCAACTAGACTACAGGGATAATA 57.344 33.333 0.00 0.00 0.00 0.98
1604 3016 7.973048 TGTTCAACTAGACTACAGGGATAAT 57.027 36.000 0.00 0.00 0.00 1.28
1605 3017 7.973048 ATGTTCAACTAGACTACAGGGATAA 57.027 36.000 0.00 0.00 0.00 1.75
1606 3018 7.973048 AATGTTCAACTAGACTACAGGGATA 57.027 36.000 0.00 0.00 0.00 2.59
1607 3019 6.875972 AATGTTCAACTAGACTACAGGGAT 57.124 37.500 0.00 0.00 0.00 3.85
1608 3020 6.681729 AAATGTTCAACTAGACTACAGGGA 57.318 37.500 0.00 0.00 0.00 4.20
1609 3021 7.042335 CCTAAATGTTCAACTAGACTACAGGG 58.958 42.308 0.00 0.00 0.00 4.45
1610 3022 7.042335 CCCTAAATGTTCAACTAGACTACAGG 58.958 42.308 0.00 0.00 0.00 4.00
1611 3023 7.042335 CCCCTAAATGTTCAACTAGACTACAG 58.958 42.308 0.00 0.00 0.00 2.74
1612 3024 6.070424 CCCCCTAAATGTTCAACTAGACTACA 60.070 42.308 0.00 0.00 0.00 2.74
1613 3025 6.346896 CCCCCTAAATGTTCAACTAGACTAC 58.653 44.000 0.00 0.00 0.00 2.73
1614 3026 5.104652 GCCCCCTAAATGTTCAACTAGACTA 60.105 44.000 0.00 0.00 0.00 2.59
1615 3027 4.324331 GCCCCCTAAATGTTCAACTAGACT 60.324 45.833 0.00 0.00 0.00 3.24
1616 3028 3.945921 GCCCCCTAAATGTTCAACTAGAC 59.054 47.826 0.00 0.00 0.00 2.59
1617 3029 3.850173 AGCCCCCTAAATGTTCAACTAGA 59.150 43.478 0.00 0.00 0.00 2.43
1618 3030 3.947834 CAGCCCCCTAAATGTTCAACTAG 59.052 47.826 0.00 0.00 0.00 2.57
1619 3031 3.589735 TCAGCCCCCTAAATGTTCAACTA 59.410 43.478 0.00 0.00 0.00 2.24
1620 3032 2.378547 TCAGCCCCCTAAATGTTCAACT 59.621 45.455 0.00 0.00 0.00 3.16
1621 3033 2.755103 CTCAGCCCCCTAAATGTTCAAC 59.245 50.000 0.00 0.00 0.00 3.18
1622 3034 2.883888 GCTCAGCCCCCTAAATGTTCAA 60.884 50.000 0.00 0.00 0.00 2.69
1623 3035 1.340991 GCTCAGCCCCCTAAATGTTCA 60.341 52.381 0.00 0.00 0.00 3.18
1624 3036 1.340991 TGCTCAGCCCCCTAAATGTTC 60.341 52.381 0.00 0.00 0.00 3.18
1625 3037 0.704076 TGCTCAGCCCCCTAAATGTT 59.296 50.000 0.00 0.00 0.00 2.71
1626 3038 0.704076 TTGCTCAGCCCCCTAAATGT 59.296 50.000 0.00 0.00 0.00 2.71
1627 3039 1.106285 GTTGCTCAGCCCCCTAAATG 58.894 55.000 0.00 0.00 0.00 2.32
1628 3040 0.033109 GGTTGCTCAGCCCCCTAAAT 60.033 55.000 0.00 0.00 0.00 1.40
1629 3041 1.382629 GGTTGCTCAGCCCCCTAAA 59.617 57.895 0.00 0.00 0.00 1.85
1630 3042 2.612493 GGGTTGCTCAGCCCCCTAA 61.612 63.158 13.26 0.00 45.12 2.69
1631 3043 3.015145 GGGTTGCTCAGCCCCCTA 61.015 66.667 13.26 0.00 45.12 3.53
1636 3048 1.348775 ATAGGAGGGGTTGCTCAGCC 61.349 60.000 0.00 0.00 43.15 4.85
1637 3049 0.179034 CATAGGAGGGGTTGCTCAGC 60.179 60.000 0.00 0.00 0.00 4.26
1638 3050 0.179034 GCATAGGAGGGGTTGCTCAG 60.179 60.000 0.00 0.00 32.41 3.35
1639 3051 0.621571 AGCATAGGAGGGGTTGCTCA 60.622 55.000 0.00 0.00 41.38 4.26
1640 3052 2.225792 AGCATAGGAGGGGTTGCTC 58.774 57.895 0.00 0.00 41.38 4.26
1641 3053 4.508065 AGCATAGGAGGGGTTGCT 57.492 55.556 0.00 0.00 40.46 3.91
1642 3054 1.227674 CGAGCATAGGAGGGGTTGC 60.228 63.158 0.00 0.00 35.34 4.17
1643 3055 1.227674 GCGAGCATAGGAGGGGTTG 60.228 63.158 0.00 0.00 0.00 3.77
1644 3056 1.383248 AGCGAGCATAGGAGGGGTT 60.383 57.895 0.00 0.00 0.00 4.11
1645 3057 1.834822 GAGCGAGCATAGGAGGGGT 60.835 63.158 0.00 0.00 0.00 4.95
1646 3058 1.532794 AGAGCGAGCATAGGAGGGG 60.533 63.158 0.00 0.00 0.00 4.79
1647 3059 1.112315 ACAGAGCGAGCATAGGAGGG 61.112 60.000 0.00 0.00 0.00 4.30
1648 3060 1.610363 TACAGAGCGAGCATAGGAGG 58.390 55.000 0.00 0.00 0.00 4.30
1649 3061 2.816672 TGATACAGAGCGAGCATAGGAG 59.183 50.000 0.00 0.00 0.00 3.69
1650 3062 2.554462 GTGATACAGAGCGAGCATAGGA 59.446 50.000 0.00 0.00 0.00 2.94
1651 3063 2.666895 CGTGATACAGAGCGAGCATAGG 60.667 54.545 0.00 0.00 0.00 2.57
1652 3064 2.579541 CGTGATACAGAGCGAGCATAG 58.420 52.381 0.00 0.00 0.00 2.23
1653 3065 1.266989 CCGTGATACAGAGCGAGCATA 59.733 52.381 0.00 0.00 0.00 3.14
1654 3066 0.031314 CCGTGATACAGAGCGAGCAT 59.969 55.000 0.00 0.00 0.00 3.79
1655 3067 1.433471 CCGTGATACAGAGCGAGCA 59.567 57.895 0.00 0.00 0.00 4.26
1656 3068 1.946650 GCCGTGATACAGAGCGAGC 60.947 63.158 0.00 0.00 0.00 5.03
1657 3069 1.299468 GGCCGTGATACAGAGCGAG 60.299 63.158 0.00 0.00 0.00 5.03
1658 3070 2.049767 TGGCCGTGATACAGAGCGA 61.050 57.895 0.00 0.00 0.00 4.93
1659 3071 1.878522 GTGGCCGTGATACAGAGCG 60.879 63.158 0.00 0.00 0.00 5.03
1660 3072 1.878522 CGTGGCCGTGATACAGAGC 60.879 63.158 0.00 0.00 0.00 4.09
1661 3073 1.878522 GCGTGGCCGTGATACAGAG 60.879 63.158 0.00 0.00 36.15 3.35
1662 3074 2.183300 GCGTGGCCGTGATACAGA 59.817 61.111 0.00 0.00 36.15 3.41
1663 3075 2.890474 GGCGTGGCCGTGATACAG 60.890 66.667 0.00 0.00 39.62 2.74
1673 3085 0.447801 CATACACAAGAAGGCGTGGC 59.552 55.000 0.00 0.00 37.45 5.01
1674 3086 2.002586 CTCATACACAAGAAGGCGTGG 58.997 52.381 0.00 0.00 37.45 4.94
1675 3087 2.668457 GTCTCATACACAAGAAGGCGTG 59.332 50.000 0.00 0.00 39.10 5.34
1676 3088 2.353803 GGTCTCATACACAAGAAGGCGT 60.354 50.000 0.00 0.00 0.00 5.68
1677 3089 2.271800 GGTCTCATACACAAGAAGGCG 58.728 52.381 0.00 0.00 0.00 5.52
1678 3090 2.271800 CGGTCTCATACACAAGAAGGC 58.728 52.381 0.00 0.00 0.00 4.35
1679 3091 3.056821 TCACGGTCTCATACACAAGAAGG 60.057 47.826 0.00 0.00 0.00 3.46
1680 3092 4.174411 TCACGGTCTCATACACAAGAAG 57.826 45.455 0.00 0.00 0.00 2.85
1681 3093 4.494484 CATCACGGTCTCATACACAAGAA 58.506 43.478 0.00 0.00 0.00 2.52
1682 3094 3.676049 GCATCACGGTCTCATACACAAGA 60.676 47.826 0.00 0.00 0.00 3.02
1683 3095 2.604914 GCATCACGGTCTCATACACAAG 59.395 50.000 0.00 0.00 0.00 3.16
1684 3096 2.616960 GCATCACGGTCTCATACACAA 58.383 47.619 0.00 0.00 0.00 3.33
1685 3097 1.134818 GGCATCACGGTCTCATACACA 60.135 52.381 0.00 0.00 0.00 3.72
1686 3098 1.571919 GGCATCACGGTCTCATACAC 58.428 55.000 0.00 0.00 0.00 2.90
1687 3099 0.102300 CGGCATCACGGTCTCATACA 59.898 55.000 0.00 0.00 0.00 2.29
1688 3100 0.102481 ACGGCATCACGGTCTCATAC 59.898 55.000 0.00 0.00 38.39 2.39
1689 3101 0.821517 AACGGCATCACGGTCTCATA 59.178 50.000 0.00 0.00 38.39 2.15
1690 3102 0.036388 AAACGGCATCACGGTCTCAT 60.036 50.000 0.00 0.00 38.39 2.90
1691 3103 0.250124 AAAACGGCATCACGGTCTCA 60.250 50.000 0.00 0.00 38.39 3.27
1692 3104 0.165944 CAAAACGGCATCACGGTCTC 59.834 55.000 0.00 0.00 38.39 3.36
1693 3105 0.534203 ACAAAACGGCATCACGGTCT 60.534 50.000 0.00 0.00 38.39 3.85
1694 3106 1.149987 TACAAAACGGCATCACGGTC 58.850 50.000 0.00 0.00 38.39 4.79
1695 3107 1.466950 CATACAAAACGGCATCACGGT 59.533 47.619 0.00 0.00 38.39 4.83
1696 3108 1.466950 ACATACAAAACGGCATCACGG 59.533 47.619 0.00 0.00 38.39 4.94
1697 3109 2.892373 ACATACAAAACGGCATCACG 57.108 45.000 0.00 0.00 40.31 4.35
1698 3110 4.419522 AGAACATACAAAACGGCATCAC 57.580 40.909 0.00 0.00 0.00 3.06
1699 3111 4.083003 GGAAGAACATACAAAACGGCATCA 60.083 41.667 0.00 0.00 0.00 3.07
1700 3112 4.156008 AGGAAGAACATACAAAACGGCATC 59.844 41.667 0.00 0.00 0.00 3.91
1701 3113 4.079253 AGGAAGAACATACAAAACGGCAT 58.921 39.130 0.00 0.00 0.00 4.40
1702 3114 3.482436 AGGAAGAACATACAAAACGGCA 58.518 40.909 0.00 0.00 0.00 5.69
1703 3115 4.215613 AGAAGGAAGAACATACAAAACGGC 59.784 41.667 0.00 0.00 0.00 5.68
1704 3116 5.941948 AGAAGGAAGAACATACAAAACGG 57.058 39.130 0.00 0.00 0.00 4.44
1705 3117 8.251750 TGATAGAAGGAAGAACATACAAAACG 57.748 34.615 0.00 0.00 0.00 3.60
1708 3120 8.677300 GCATTGATAGAAGGAAGAACATACAAA 58.323 33.333 0.00 0.00 0.00 2.83
1709 3121 7.828717 TGCATTGATAGAAGGAAGAACATACAA 59.171 33.333 0.00 0.00 0.00 2.41
1710 3122 7.337938 TGCATTGATAGAAGGAAGAACATACA 58.662 34.615 0.00 0.00 0.00 2.29
1711 3123 7.792374 TGCATTGATAGAAGGAAGAACATAC 57.208 36.000 0.00 0.00 0.00 2.39
1712 3124 8.843262 CATTGCATTGATAGAAGGAAGAACATA 58.157 33.333 2.33 0.00 0.00 2.29
1713 3125 7.558807 TCATTGCATTGATAGAAGGAAGAACAT 59.441 33.333 7.19 0.00 0.00 2.71
1714 3126 6.885918 TCATTGCATTGATAGAAGGAAGAACA 59.114 34.615 7.19 0.00 0.00 3.18
1715 3127 7.325660 TCATTGCATTGATAGAAGGAAGAAC 57.674 36.000 7.19 0.00 0.00 3.01
1716 3128 9.803507 ATATCATTGCATTGATAGAAGGAAGAA 57.196 29.630 26.59 10.20 40.82 2.52
1717 3129 9.227777 CATATCATTGCATTGATAGAAGGAAGA 57.772 33.333 26.59 10.76 40.82 2.87
1718 3130 7.968956 GCATATCATTGCATTGATAGAAGGAAG 59.031 37.037 26.59 15.40 40.82 3.46
1719 3131 7.668469 AGCATATCATTGCATTGATAGAAGGAA 59.332 33.333 26.59 11.88 45.23 3.36
1720 3132 7.173032 AGCATATCATTGCATTGATAGAAGGA 58.827 34.615 26.59 12.44 45.23 3.36
1721 3133 7.392494 AGCATATCATTGCATTGATAGAAGG 57.608 36.000 26.59 19.18 45.23 3.46
1722 3134 8.396390 GGTAGCATATCATTGCATTGATAGAAG 58.604 37.037 26.59 21.05 45.23 2.85
1723 3135 7.884354 TGGTAGCATATCATTGCATTGATAGAA 59.116 33.333 26.59 13.57 45.23 2.10
1724 3136 7.396418 TGGTAGCATATCATTGCATTGATAGA 58.604 34.615 26.59 14.13 45.23 1.98
1725 3137 7.619964 TGGTAGCATATCATTGCATTGATAG 57.380 36.000 26.59 20.78 45.23 2.08
1726 3138 7.067737 CCATGGTAGCATATCATTGCATTGATA 59.932 37.037 25.56 25.56 40.05 2.15
1727 3139 6.127451 CCATGGTAGCATATCATTGCATTGAT 60.127 38.462 23.42 23.42 40.05 2.57
1728 3140 5.184287 CCATGGTAGCATATCATTGCATTGA 59.816 40.000 13.30 13.30 40.05 2.57
1729 3141 5.047590 ACCATGGTAGCATATCATTGCATTG 60.048 40.000 18.10 2.08 40.05 2.82
1730 3142 5.047590 CACCATGGTAGCATATCATTGCATT 60.048 40.000 19.28 0.00 40.05 3.56
1731 3143 4.461431 CACCATGGTAGCATATCATTGCAT 59.539 41.667 19.28 0.00 40.05 3.96
1732 3144 3.822167 CACCATGGTAGCATATCATTGCA 59.178 43.478 19.28 0.00 40.05 4.08
1733 3145 3.822735 ACACCATGGTAGCATATCATTGC 59.177 43.478 19.28 0.00 40.05 3.56
1734 3146 7.413328 CGAATACACCATGGTAGCATATCATTG 60.413 40.741 19.28 2.81 40.05 2.82
1735 3147 6.595326 CGAATACACCATGGTAGCATATCATT 59.405 38.462 19.28 7.92 40.05 2.57
1736 3148 6.070824 TCGAATACACCATGGTAGCATATCAT 60.071 38.462 19.28 0.00 44.92 2.45
1737 3149 5.245075 TCGAATACACCATGGTAGCATATCA 59.755 40.000 19.28 0.00 35.27 2.15
1738 3150 5.720202 TCGAATACACCATGGTAGCATATC 58.280 41.667 19.28 10.36 0.00 1.63
1739 3151 5.480422 TCTCGAATACACCATGGTAGCATAT 59.520 40.000 19.28 10.34 0.00 1.78
1740 3152 4.830600 TCTCGAATACACCATGGTAGCATA 59.169 41.667 19.28 8.37 0.00 3.14
1741 3153 3.641436 TCTCGAATACACCATGGTAGCAT 59.359 43.478 19.28 8.14 0.00 3.79
1742 3154 3.028130 TCTCGAATACACCATGGTAGCA 58.972 45.455 19.28 5.84 0.00 3.49
1743 3155 3.728076 TCTCGAATACACCATGGTAGC 57.272 47.619 19.28 4.38 0.00 3.58
1744 3156 6.594159 AGTTTTTCTCGAATACACCATGGTAG 59.406 38.462 19.28 14.48 0.00 3.18
1745 3157 6.370442 CAGTTTTTCTCGAATACACCATGGTA 59.630 38.462 19.28 2.73 0.00 3.25
1746 3158 5.181245 CAGTTTTTCTCGAATACACCATGGT 59.819 40.000 13.00 13.00 0.00 3.55
1747 3159 5.181245 ACAGTTTTTCTCGAATACACCATGG 59.819 40.000 11.19 11.19 0.00 3.66
1748 3160 6.079763 CACAGTTTTTCTCGAATACACCATG 58.920 40.000 0.00 0.00 0.00 3.66
1749 3161 5.763204 ACACAGTTTTTCTCGAATACACCAT 59.237 36.000 0.00 0.00 0.00 3.55
1750 3162 5.007234 CACACAGTTTTTCTCGAATACACCA 59.993 40.000 0.00 0.00 0.00 4.17
1751 3163 5.007332 ACACACAGTTTTTCTCGAATACACC 59.993 40.000 0.00 0.00 0.00 4.16
1752 3164 6.044512 ACACACAGTTTTTCTCGAATACAC 57.955 37.500 0.00 0.00 0.00 2.90
1753 3165 6.537301 AGAACACACAGTTTTTCTCGAATACA 59.463 34.615 0.00 0.00 41.51 2.29
1754 3166 6.945072 AGAACACACAGTTTTTCTCGAATAC 58.055 36.000 0.00 0.00 41.51 1.89
1755 3167 8.651391 TTAGAACACACAGTTTTTCTCGAATA 57.349 30.769 0.00 0.00 41.51 1.75
1756 3168 7.548196 TTAGAACACACAGTTTTTCTCGAAT 57.452 32.000 0.00 0.00 41.51 3.34
1757 3169 6.971527 TTAGAACACACAGTTTTTCTCGAA 57.028 33.333 0.00 0.00 41.51 3.71
1758 3170 6.456449 GCTTTAGAACACACAGTTTTTCTCGA 60.456 38.462 0.00 0.00 41.51 4.04
1759 3171 5.677178 GCTTTAGAACACACAGTTTTTCTCG 59.323 40.000 0.00 0.00 41.51 4.04
1760 3172 6.551736 TGCTTTAGAACACACAGTTTTTCTC 58.448 36.000 0.00 0.00 41.51 2.87
1761 3173 6.151144 ACTGCTTTAGAACACACAGTTTTTCT 59.849 34.615 0.00 0.00 41.51 2.52
1762 3174 6.251376 CACTGCTTTAGAACACACAGTTTTTC 59.749 38.462 0.00 0.00 41.51 2.29
1763 3175 6.092748 CACTGCTTTAGAACACACAGTTTTT 58.907 36.000 0.00 0.00 41.51 1.94
1764 3176 5.640732 CACTGCTTTAGAACACACAGTTTT 58.359 37.500 0.00 0.00 41.51 2.43
1765 3177 4.438744 GCACTGCTTTAGAACACACAGTTT 60.439 41.667 0.00 0.00 41.51 2.66
1766 3178 3.065371 GCACTGCTTTAGAACACACAGTT 59.935 43.478 0.00 0.00 44.93 3.16
1767 3179 2.614057 GCACTGCTTTAGAACACACAGT 59.386 45.455 0.00 0.00 38.84 3.55
1768 3180 2.031682 GGCACTGCTTTAGAACACACAG 60.032 50.000 0.00 0.00 0.00 3.66
1798 3210 8.057742 CCGTTTTCATCTTTGTTCTTTTTCATG 58.942 33.333 0.00 0.00 0.00 3.07
1827 3239 4.610456 CGCATGCGTGACGGATAAAATTAT 60.610 41.667 31.33 0.00 35.39 1.28
1844 3256 1.201921 GCAGTAGTGTAACACGCATGC 60.202 52.381 7.91 7.91 41.43 4.06
1881 3303 3.902881 ACTCTCTGACCCAACATGATC 57.097 47.619 0.00 0.00 0.00 2.92
1900 3322 7.034685 AGCAACCCCGAATAAAATACATTAC 57.965 36.000 0.00 0.00 0.00 1.89
1906 3328 7.114095 AGAAAGTAGCAACCCCGAATAAAATA 58.886 34.615 0.00 0.00 0.00 1.40
1919 3341 8.870879 ACATTTCTCGTTATAGAAAGTAGCAAC 58.129 33.333 5.41 0.00 45.88 4.17
1945 3370 5.416013 CCCAAGCACTCGAGTAGATCATATA 59.584 44.000 19.57 0.00 0.00 0.86
1952 3377 2.026542 TCTACCCAAGCACTCGAGTAGA 60.027 50.000 19.57 11.93 35.16 2.59
1962 3390 1.422977 TTGTGCCCTCTACCCAAGCA 61.423 55.000 0.00 0.00 0.00 3.91
1979 3407 6.183360 CCCTGCTTAGTGAATTAGGGATTTTG 60.183 42.308 0.00 0.00 46.19 2.44
2003 3451 1.280444 CCGGTTGCAACGTTGTACC 59.720 57.895 29.44 29.44 34.09 3.34
2014 3462 3.192633 AGTTTGATTTATCCACCGGTTGC 59.807 43.478 2.97 0.00 0.00 4.17
2015 3463 5.413213 TGTAGTTTGATTTATCCACCGGTTG 59.587 40.000 2.97 0.00 0.00 3.77
2016 3464 5.562635 TGTAGTTTGATTTATCCACCGGTT 58.437 37.500 2.97 0.00 0.00 4.44
2018 3466 5.588648 ACATGTAGTTTGATTTATCCACCGG 59.411 40.000 0.00 0.00 0.00 5.28
2020 3468 6.680378 GCCACATGTAGTTTGATTTATCCACC 60.680 42.308 0.00 0.00 0.00 4.61
2022 3470 6.186957 AGCCACATGTAGTTTGATTTATCCA 58.813 36.000 0.00 0.00 0.00 3.41
2023 3471 6.238759 GGAGCCACATGTAGTTTGATTTATCC 60.239 42.308 0.00 0.00 0.00 2.59
2088 3537 5.488262 AATAAAAAGCTGGGAGCAACATT 57.512 34.783 0.00 0.00 45.56 2.71
2097 3546 8.682936 AGTACATGAGATAATAAAAAGCTGGG 57.317 34.615 0.00 0.00 0.00 4.45
2135 3584 6.306397 GCACTTTATTTAAAATTGTGGCAGC 58.694 36.000 12.51 0.00 0.00 5.25
2162 3611 5.880054 TTTCTATTTGAAGGAAAGCCTCG 57.120 39.130 0.00 0.00 46.28 4.63
2175 3624 9.046296 ACGGAGCTACATCTATTTTTCTATTTG 57.954 33.333 0.00 0.00 0.00 2.32
2179 3628 5.983720 GCACGGAGCTACATCTATTTTTCTA 59.016 40.000 0.00 0.00 41.15 2.10
2181 3630 4.318121 CGCACGGAGCTACATCTATTTTTC 60.318 45.833 0.00 0.00 42.61 2.29
2185 3634 1.681793 ACGCACGGAGCTACATCTATT 59.318 47.619 0.00 0.00 42.61 1.73
2186 3635 1.319541 ACGCACGGAGCTACATCTAT 58.680 50.000 0.00 0.00 42.61 1.98
2187 3636 1.100510 AACGCACGGAGCTACATCTA 58.899 50.000 0.00 0.00 42.61 1.98
2188 3637 0.458543 CAACGCACGGAGCTACATCT 60.459 55.000 0.00 0.00 42.61 2.90
2194 3643 2.709125 TAGCAACAACGCACGGAGCT 62.709 55.000 0.00 0.00 42.61 4.09
2201 3650 3.073678 ACATGATTCTAGCAACAACGCA 58.926 40.909 0.00 0.00 0.00 5.24
2250 3699 9.856162 ATACTCTTCCTTGGTTTTAGTTGTTTA 57.144 29.630 0.00 0.00 0.00 2.01
2256 3705 5.045066 GGGGATACTCTTCCTTGGTTTTAGT 60.045 44.000 0.00 0.00 35.97 2.24
2257 3706 5.437946 GGGGATACTCTTCCTTGGTTTTAG 58.562 45.833 0.00 0.00 35.97 1.85
2268 3717 1.008767 CGACGCGGGGATACTCTTC 60.009 63.158 12.47 0.00 31.17 2.87
2320 3769 0.684153 GGCAGCAAGGGGAGCAAATA 60.684 55.000 0.00 0.00 0.00 1.40
2321 3770 1.986210 GGCAGCAAGGGGAGCAAAT 60.986 57.895 0.00 0.00 0.00 2.32
2341 3790 2.896854 CACATGGGCGTCATCCGG 60.897 66.667 0.00 0.00 36.94 5.14
2381 3847 3.353836 CCGACACAAACCCGCCTG 61.354 66.667 0.00 0.00 0.00 4.85
2388 3854 3.521560 TCTATCTCATGCCGACACAAAC 58.478 45.455 0.00 0.00 0.00 2.93
2390 3856 3.023832 TCTCTATCTCATGCCGACACAA 58.976 45.455 0.00 0.00 0.00 3.33
2394 3860 1.068885 CCGTCTCTATCTCATGCCGAC 60.069 57.143 0.00 0.00 0.00 4.79
2400 3866 0.955178 CACCGCCGTCTCTATCTCAT 59.045 55.000 0.00 0.00 0.00 2.90
2401 3867 0.393944 ACACCGCCGTCTCTATCTCA 60.394 55.000 0.00 0.00 0.00 3.27
2406 3872 3.755628 GCCACACCGCCGTCTCTA 61.756 66.667 0.00 0.00 0.00 2.43
2416 3882 2.255252 GTTGCACATCGCCACACC 59.745 61.111 0.00 0.00 41.33 4.16
2418 3884 1.525765 ACTGTTGCACATCGCCACA 60.526 52.632 0.00 0.00 43.56 4.17
2423 3889 3.253230 TCACTATCACTGTTGCACATCG 58.747 45.455 0.00 0.00 0.00 3.84
2426 3892 2.807967 GCTTCACTATCACTGTTGCACA 59.192 45.455 0.00 0.00 0.00 4.57
2438 3904 2.674852 CACGTCTGCATTGCTTCACTAT 59.325 45.455 10.49 0.00 0.00 2.12
2439 3905 2.068519 CACGTCTGCATTGCTTCACTA 58.931 47.619 10.49 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.