Multiple sequence alignment - TraesCS7A01G267800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G267800 chr7A 100.000 5407 0 0 1 5407 271374803 271380209 0.000000e+00 9985.0
1 TraesCS7A01G267800 chr7A 98.165 109 2 0 4984 5092 271379678 271379786 1.990000e-44 191.0
2 TraesCS7A01G267800 chr7A 98.165 109 2 0 4876 4984 271379786 271379894 1.990000e-44 191.0
3 TraesCS7A01G267800 chr7A 94.118 51 2 1 5089 5139 181833206 181833255 5.810000e-10 76.8
4 TraesCS7A01G267800 chr7A 95.652 46 2 0 5090 5135 246710826 246710871 2.090000e-09 75.0
5 TraesCS7A01G267800 chr7D 94.777 2910 113 18 1824 4703 249792245 249789345 0.000000e+00 4495.0
6 TraesCS7A01G267800 chr7D 93.917 1085 38 15 721 1789 249793320 249792248 0.000000e+00 1613.0
7 TraesCS7A01G267800 chr7D 93.277 714 47 1 1 714 153133785 153134497 0.000000e+00 1051.0
8 TraesCS7A01G267800 chr7D 82.759 174 22 5 5172 5338 249788976 249788804 1.210000e-31 148.0
9 TraesCS7A01G267800 chr7D 97.059 34 1 0 715 748 249793337 249793370 2.100000e-04 58.4
10 TraesCS7A01G267800 chr7B 93.587 2074 95 20 2903 4942 226902804 226900735 0.000000e+00 3059.0
11 TraesCS7A01G267800 chr7B 96.866 1053 25 5 1824 2874 226904885 226903839 0.000000e+00 1755.0
12 TraesCS7A01G267800 chr7B 94.097 847 36 5 949 1782 226905740 226904895 0.000000e+00 1275.0
13 TraesCS7A01G267800 chr7B 87.925 265 14 5 5152 5407 226900738 226900483 4.090000e-76 296.0
14 TraesCS7A01G267800 chr7B 83.019 159 3 4 780 914 226905896 226905738 7.350000e-24 122.0
15 TraesCS7A01G267800 chr7B 95.522 67 3 0 4984 5050 226900801 226900735 2.060000e-19 108.0
16 TraesCS7A01G267800 chr7B 91.837 49 4 0 1229 1277 226905423 226905375 9.720000e-08 69.4
17 TraesCS7A01G267800 chr6D 93.846 715 43 1 1 714 335982786 335983500 0.000000e+00 1075.0
18 TraesCS7A01G267800 chr3D 93.566 715 44 2 1 714 582840091 582839378 0.000000e+00 1064.0
19 TraesCS7A01G267800 chr3D 93.007 715 48 2 1 714 577291756 577292469 0.000000e+00 1042.0
20 TraesCS7A01G267800 chr5D 92.737 716 49 3 1 714 344889407 344888693 0.000000e+00 1031.0
21 TraesCS7A01G267800 chr5D 92.308 715 52 3 1 714 466648002 466647290 0.000000e+00 1013.0
22 TraesCS7A01G267800 chr5D 89.600 125 11 2 1038 1160 399332297 399332173 2.020000e-34 158.0
23 TraesCS7A01G267800 chr5D 93.750 48 3 0 1785 1832 458893889 458893936 7.510000e-09 73.1
24 TraesCS7A01G267800 chr5D 90.909 55 3 2 5081 5135 481813839 481813787 7.510000e-09 73.1
25 TraesCS7A01G267800 chr5D 88.679 53 4 2 1782 1833 94906663 94906612 4.520000e-06 63.9
26 TraesCS7A01G267800 chr4D 92.437 714 52 2 1 714 439164688 439165399 0.000000e+00 1018.0
27 TraesCS7A01G267800 chr4D 92.308 715 52 3 1 714 26514523 26515235 0.000000e+00 1013.0
28 TraesCS7A01G267800 chrUn 92.179 716 54 2 1 714 134457606 134458321 0.000000e+00 1011.0
29 TraesCS7A01G267800 chr5B 86.275 153 14 7 1015 1160 479719544 479719392 5.610000e-35 159.0
30 TraesCS7A01G267800 chr5B 92.000 50 4 0 1786 1835 457963217 457963168 2.700000e-08 71.3
31 TraesCS7A01G267800 chr5A 88.000 125 13 2 1038 1160 504959878 504959754 4.360000e-31 147.0
32 TraesCS7A01G267800 chr4B 94.231 52 2 1 5088 5139 447451705 447451755 1.610000e-10 78.7
33 TraesCS7A01G267800 chr4B 95.745 47 1 1 5090 5135 54741095 54741049 2.090000e-09 75.0
34 TraesCS7A01G267800 chr4B 95.122 41 0 2 1805 1845 311369272 311369234 4.520000e-06 63.9
35 TraesCS7A01G267800 chr4A 94.000 50 1 2 5092 5139 149042765 149042814 2.090000e-09 75.0
36 TraesCS7A01G267800 chr2A 91.071 56 4 1 5084 5139 96075003 96074949 2.090000e-09 75.0
37 TraesCS7A01G267800 chr2A 93.617 47 3 0 5093 5139 650624415 650624369 2.700000e-08 71.3
38 TraesCS7A01G267800 chr2B 92.157 51 3 1 5089 5139 483453041 483452992 2.700000e-08 71.3
39 TraesCS7A01G267800 chr6B 96.970 33 1 0 1806 1838 214871954 214871922 7.570000e-04 56.5
40 TraesCS7A01G267800 chr6B 87.500 48 5 1 1806 1853 424084168 424084214 3.000000e-03 54.7
41 TraesCS7A01G267800 chr6B 87.500 48 5 1 1806 1853 424306866 424306912 3.000000e-03 54.7
42 TraesCS7A01G267800 chr3B 96.970 33 0 1 1806 1838 20486558 20486589 3.000000e-03 54.7
43 TraesCS7A01G267800 chr3B 96.970 33 0 1 1806 1838 73785966 73785935 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G267800 chr7A 271374803 271380209 5406 False 3455.666667 9985 98.776667 1 5407 3 chr7A.!!$F3 5406
1 TraesCS7A01G267800 chr7D 249788804 249793320 4516 True 2085.333333 4495 90.484333 721 5338 3 chr7D.!!$R1 4617
2 TraesCS7A01G267800 chr7D 153133785 153134497 712 False 1051.000000 1051 93.277000 1 714 1 chr7D.!!$F1 713
3 TraesCS7A01G267800 chr7B 226900483 226905896 5413 True 954.914286 3059 91.836143 780 5407 7 chr7B.!!$R1 4627
4 TraesCS7A01G267800 chr6D 335982786 335983500 714 False 1075.000000 1075 93.846000 1 714 1 chr6D.!!$F1 713
5 TraesCS7A01G267800 chr3D 582839378 582840091 713 True 1064.000000 1064 93.566000 1 714 1 chr3D.!!$R1 713
6 TraesCS7A01G267800 chr3D 577291756 577292469 713 False 1042.000000 1042 93.007000 1 714 1 chr3D.!!$F1 713
7 TraesCS7A01G267800 chr5D 344888693 344889407 714 True 1031.000000 1031 92.737000 1 714 1 chr5D.!!$R2 713
8 TraesCS7A01G267800 chr5D 466647290 466648002 712 True 1013.000000 1013 92.308000 1 714 1 chr5D.!!$R4 713
9 TraesCS7A01G267800 chr4D 439164688 439165399 711 False 1018.000000 1018 92.437000 1 714 1 chr4D.!!$F2 713
10 TraesCS7A01G267800 chr4D 26514523 26515235 712 False 1013.000000 1013 92.308000 1 714 1 chr4D.!!$F1 713
11 TraesCS7A01G267800 chrUn 134457606 134458321 715 False 1011.000000 1011 92.179000 1 714 1 chrUn.!!$F1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
619 624 0.033894 AAATTTATGCGGGTCGGGGT 60.034 50.000 0.00 0.0 0.00 4.95 F
1325 1360 0.250338 GTCGCTGTTGGTTTCCCTCT 60.250 55.000 0.00 0.0 0.00 3.69 F
1507 1553 0.384309 TCGACACTCGACAGCAAAGT 59.616 50.000 0.00 0.0 44.82 2.66 F
1508 1554 0.504384 CGACACTCGACAGCAAAGTG 59.496 55.000 0.00 0.0 43.74 3.16 F
2377 2435 1.064505 CACAGTGTTCACAAGTGGCAG 59.935 52.381 15.54 0.0 33.30 4.85 F
4017 5104 0.682209 AAGCCTGTGGATGATGTGGC 60.682 55.000 0.00 0.0 40.54 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1507 1553 1.628340 TCGAGAGGCTCCAAAAATCCA 59.372 47.619 11.71 0.0 0.00 3.41 R
2756 2816 0.184933 TAAGGCCAGCCACACAAACT 59.815 50.000 12.03 0.0 38.92 2.66 R
2974 4040 0.392706 CACCCTTCAAAGGTTTGGGC 59.607 55.000 7.96 0.0 44.98 5.36 R
3250 4317 3.998341 CTGCTCCAAAAATTCCCAACATG 59.002 43.478 0.00 0.0 0.00 3.21 R
4353 5440 0.178873 TCCTTGTAGGAGGCCTGGTT 60.179 55.000 12.00 0.0 40.06 3.67 R
4901 6005 0.877071 ATCGCATCCAATTCATCGCC 59.123 50.000 0.00 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 163 5.344743 AATCGGATAGCAAGAACTTCTCA 57.655 39.130 0.00 0.00 0.00 3.27
219 220 3.181509 CGTCAATCTACTACACAGCTCGT 60.182 47.826 0.00 0.00 0.00 4.18
503 507 1.678970 GCGGGCTGAAATGTCCCTT 60.679 57.895 0.00 0.00 37.89 3.95
587 592 1.476845 GGTTGGGGCCGGAAATTTGT 61.477 55.000 5.05 0.00 0.00 2.83
606 611 2.812591 TGTCGCGCCACCTAAAAATTTA 59.187 40.909 0.00 0.00 0.00 1.40
613 618 3.118920 GCCACCTAAAAATTTATGCGGGT 60.119 43.478 0.00 0.00 0.00 5.28
619 624 0.033894 AAATTTATGCGGGTCGGGGT 60.034 50.000 0.00 0.00 0.00 4.95
635 640 3.311110 GTGGGGTGCGGAGTCTGA 61.311 66.667 2.16 0.00 0.00 3.27
649 654 0.678048 GTCTGATCGGGCAGGCTTTT 60.678 55.000 0.00 0.00 37.52 2.27
663 668 1.004200 CTTTTCGGCCTGTACCCGT 60.004 57.895 0.00 0.00 45.71 5.28
670 675 1.405797 CGGCCTGTACCCGTATTTTGA 60.406 52.381 0.00 0.00 40.84 2.69
687 692 8.655092 CGTATTTTGACGGTTATTTTACAGGTA 58.345 33.333 0.00 0.00 39.19 3.08
707 712 2.836360 GGACGGATGCGGGGTCTA 60.836 66.667 12.44 0.00 0.00 2.59
708 713 2.428925 GGACGGATGCGGGGTCTAA 61.429 63.158 12.44 0.00 0.00 2.10
714 719 2.526432 GGATGCGGGGTCTAATAGAGA 58.474 52.381 0.00 0.00 0.00 3.10
715 720 2.494073 GGATGCGGGGTCTAATAGAGAG 59.506 54.545 0.00 0.00 33.72 3.20
727 732 6.102663 GTCTAATAGAGAGCAGAAACAGCAA 58.897 40.000 0.00 0.00 33.72 3.91
877 906 1.399727 CGATTGTTGTTCAACTCGGCC 60.400 52.381 15.18 0.00 38.97 6.13
892 921 1.375326 GGCCCTGTTCGTTTCCTCT 59.625 57.895 0.00 0.00 0.00 3.69
1277 1312 6.647212 TGTGCTTTGATTAATACTCTGTCG 57.353 37.500 0.00 0.00 0.00 4.35
1295 1330 1.463056 TCGTCGCTAATTGTGCTTTGG 59.537 47.619 0.00 0.00 0.00 3.28
1300 1335 4.615541 GTCGCTAATTGTGCTTTGGTTAAC 59.384 41.667 0.00 0.00 0.00 2.01
1325 1360 0.250338 GTCGCTGTTGGTTTCCCTCT 60.250 55.000 0.00 0.00 0.00 3.69
1507 1553 0.384309 TCGACACTCGACAGCAAAGT 59.616 50.000 0.00 0.00 44.82 2.66
1508 1554 0.504384 CGACACTCGACAGCAAAGTG 59.496 55.000 0.00 0.00 43.74 3.16
1560 1606 2.289631 GGTTCCATGGCTTTTTCCCAAG 60.290 50.000 6.96 0.00 35.67 3.61
1648 1694 6.380274 ACAAATCATCTCTGCCATGAGAAAAT 59.620 34.615 0.00 1.19 44.94 1.82
1717 1771 2.230025 ACGATGTCACCTCAGTTCAGAG 59.770 50.000 0.00 0.00 35.39 3.35
1782 1836 1.510480 AAGCGCCAAAGTCTCAGCAC 61.510 55.000 2.29 0.00 0.00 4.40
1784 1838 1.571460 CGCCAAAGTCTCAGCACAC 59.429 57.895 0.00 0.00 0.00 3.82
1816 1870 5.505173 AAATGCTCTCATATTTTGGGACG 57.495 39.130 0.00 0.00 29.49 4.79
1817 1871 2.917933 TGCTCTCATATTTTGGGACGG 58.082 47.619 0.00 0.00 29.49 4.79
1818 1872 2.503765 TGCTCTCATATTTTGGGACGGA 59.496 45.455 0.00 0.00 29.49 4.69
1819 1873 3.134458 GCTCTCATATTTTGGGACGGAG 58.866 50.000 0.00 0.00 29.49 4.63
1820 1874 3.733337 CTCTCATATTTTGGGACGGAGG 58.267 50.000 0.00 0.00 29.49 4.30
1821 1875 2.438021 TCTCATATTTTGGGACGGAGGG 59.562 50.000 0.00 0.00 26.46 4.30
1822 1876 2.438021 CTCATATTTTGGGACGGAGGGA 59.562 50.000 0.00 0.00 0.00 4.20
2147 2204 5.358725 ACCTCTAGCTAGCTAGTTTGTTCTC 59.641 44.000 38.27 2.82 44.59 2.87
2169 2226 7.002879 TCTCTTTGACTAGTTGGTACAGTAGT 58.997 38.462 0.00 0.00 42.39 2.73
2170 2227 8.159447 TCTCTTTGACTAGTTGGTACAGTAGTA 58.841 37.037 0.00 0.00 42.39 1.82
2244 2301 6.134535 ACAAGTTTGGTATGTCTTATCCCA 57.865 37.500 0.00 0.00 0.00 4.37
2268 2326 2.035632 GTCTGGACTCTGGACCTATGG 58.964 57.143 0.00 0.00 0.00 2.74
2339 2397 2.863740 TCTGTTCTTGCGTACACTGTTG 59.136 45.455 0.00 0.00 0.00 3.33
2377 2435 1.064505 CACAGTGTTCACAAGTGGCAG 59.935 52.381 15.54 0.00 33.30 4.85
2400 2458 9.616156 GCAGAATCATATGAATCCTCTAATGAT 57.384 33.333 15.71 0.00 36.50 2.45
2514 2572 5.136816 TCGGTATGTAGTTAACACAAGCA 57.863 39.130 8.61 0.00 42.09 3.91
2584 2642 3.364621 GCTTTTATGCGACACCATGTTTG 59.635 43.478 0.00 0.00 0.00 2.93
2603 2663 5.896073 TTTGGGGGAACAAACATAATTGT 57.104 34.783 0.00 0.00 45.12 2.71
2651 2711 9.979270 GTCAAATCTTATCAGTACACATCTTTG 57.021 33.333 0.00 0.00 0.00 2.77
2756 2816 3.053991 TCAGGAAGTTCTTTGGTGTTGGA 60.054 43.478 2.25 0.00 0.00 3.53
2881 3864 9.950680 CATATATCTATTTCCGCAAGTGTTTTT 57.049 29.630 0.00 0.00 0.00 1.94
3065 4131 5.105837 ACCGAGGTAAACTAGCAACTCTTAG 60.106 44.000 0.00 0.00 0.00 2.18
3149 4215 4.305539 TCCCTTTCTCAATGCATGAAGA 57.694 40.909 0.00 3.31 37.67 2.87
3157 4223 7.640597 TTCTCAATGCATGAAGAAGATTCAT 57.359 32.000 16.22 0.00 39.53 2.57
3163 4229 8.755941 CAATGCATGAAGAAGATTCATCAATTC 58.244 33.333 0.00 0.00 38.26 2.17
3164 4230 7.640597 TGCATGAAGAAGATTCATCAATTCT 57.359 32.000 0.00 0.00 38.26 2.40
3178 4244 9.759473 ATTCATCAATTCTCTTTCCTAAAAGGA 57.241 29.630 0.00 0.00 44.10 3.36
3217 4284 6.939163 CCTCCCTAATGTTTCAGGAATATCTG 59.061 42.308 0.00 0.00 33.42 2.90
3250 4317 1.463674 ACCGAATTGAGTTGATGGCC 58.536 50.000 0.00 0.00 0.00 5.36
3319 4386 6.879400 TCCTTGGACTTAAATCTTCTAGCTC 58.121 40.000 0.00 0.00 0.00 4.09
3338 4405 8.162085 TCTAGCTCCTCCGATAATTTTCTACTA 58.838 37.037 0.00 0.00 0.00 1.82
3380 4447 7.977853 ACCTTTTACTCATCATTTGCATGATTC 59.022 33.333 0.00 0.00 46.45 2.52
3382 4449 6.923928 TTACTCATCATTTGCATGATTCGA 57.076 33.333 0.00 0.00 46.45 3.71
3428 4495 5.368145 TGAGGGATTTATCACATACTGCAC 58.632 41.667 0.00 0.00 30.91 4.57
3775 4862 5.007682 GGGTTTGTTGAGCTTTACCAGATA 58.992 41.667 0.00 0.00 0.00 1.98
3782 4869 4.708177 TGAGCTTTACCAGATAATCCTGC 58.292 43.478 0.00 0.00 32.97 4.85
3842 4929 5.686124 GCATCTATATATGTCTCCCTTGCCC 60.686 48.000 0.00 0.00 0.00 5.36
3855 4942 3.199551 TGCCCATCGCAGATTTGC 58.800 55.556 0.00 0.00 44.64 3.68
3991 5078 8.696410 ACGCAAATTTCCGATTAAATAATTGT 57.304 26.923 8.83 0.00 0.00 2.71
4017 5104 0.682209 AAGCCTGTGGATGATGTGGC 60.682 55.000 0.00 0.00 40.54 5.01
4052 5139 4.968788 GCTCGATAAACTCTACTTACCACG 59.031 45.833 0.00 0.00 0.00 4.94
4064 5151 1.595794 CTTACCACGTGTTTGTTCGCT 59.404 47.619 15.65 0.00 0.00 4.93
4107 5194 3.798639 TTCGTTGCGTTTGCCTGCG 62.799 57.895 0.00 0.00 41.78 5.18
4155 5242 4.808895 CGTACAGGTAAATGCTGCTGATTA 59.191 41.667 0.00 0.00 0.00 1.75
4360 5447 1.360192 GCGGCAATGATAACCAGGC 59.640 57.895 0.00 0.00 0.00 4.85
4410 5497 0.991920 CCCCTCCAAGAACTAGGCAA 59.008 55.000 0.00 0.00 0.00 4.52
4422 5509 2.248248 ACTAGGCAATAGGCGCATAGA 58.752 47.619 10.83 0.00 44.42 1.98
4429 5516 3.614616 GCAATAGGCGCATAGACTGATAC 59.385 47.826 10.83 0.00 39.66 2.24
4432 5519 1.537638 AGGCGCATAGACTGATACTCG 59.462 52.381 10.83 0.00 36.36 4.18
4435 5522 3.480894 GCGCATAGACTGATACTCGTAC 58.519 50.000 0.30 0.00 0.00 3.67
4439 5526 2.034104 AGACTGATACTCGTACGGCA 57.966 50.000 16.52 5.59 0.00 5.69
4491 5583 5.417894 GGAAATCCTTGTACAAGTAAAGGGG 59.582 44.000 29.05 16.11 40.78 4.79
4514 5606 5.338381 GGAACCTGTCCAGTTTGAGATATCA 60.338 44.000 5.32 0.00 46.97 2.15
4724 5828 7.418597 CCTTGCAACTGGTACTCCTAACATATA 60.419 40.741 0.00 0.00 34.23 0.86
4728 5832 7.754027 GCAACTGGTACTCCTAACATATATACG 59.246 40.741 0.00 0.00 34.23 3.06
4752 5856 6.508404 CGGCTTTTGTTGAGAAAAATCAGTTG 60.508 38.462 0.00 0.00 0.00 3.16
4755 5859 8.321005 GCTTTTGTTGAGAAAAATCAGTTGTAC 58.679 33.333 0.00 0.00 0.00 2.90
4785 5889 8.225603 ACTACAATAACCAAATGATCCATCAC 57.774 34.615 0.00 0.00 40.03 3.06
4789 5893 6.659745 ATAACCAAATGATCCATCACCATG 57.340 37.500 0.00 0.00 40.03 3.66
4792 5896 3.491964 CCAAATGATCCATCACCATGTGC 60.492 47.826 0.00 0.00 40.03 4.57
4849 5953 5.324832 AAAAGAACCCAAAGAGATGGAGA 57.675 39.130 0.00 0.00 43.54 3.71
4875 5979 5.066764 ACACAAGTTAACTGCGGTATTTTGT 59.933 36.000 9.34 3.45 0.00 2.83
4876 5980 5.974751 CACAAGTTAACTGCGGTATTTTGTT 59.025 36.000 9.34 0.00 0.00 2.83
4877 5981 7.133513 CACAAGTTAACTGCGGTATTTTGTTA 58.866 34.615 9.34 0.00 0.00 2.41
4878 5982 7.644551 CACAAGTTAACTGCGGTATTTTGTTAA 59.355 33.333 9.34 0.00 32.78 2.01
4879 5983 8.189460 ACAAGTTAACTGCGGTATTTTGTTAAA 58.811 29.630 9.34 0.00 35.69 1.52
4880 5984 9.021863 CAAGTTAACTGCGGTATTTTGTTAAAA 57.978 29.630 9.34 0.00 35.69 1.52
4881 5985 9.583765 AAGTTAACTGCGGTATTTTGTTAAAAA 57.416 25.926 9.34 0.00 39.53 1.94
4882 5986 9.752961 AGTTAACTGCGGTATTTTGTTAAAAAT 57.247 25.926 7.48 2.36 45.70 1.82
4887 5991 9.198837 ACTGCGGTATTTTGTTAAAAATAAAGG 57.801 29.630 0.00 1.21 45.37 3.11
4888 5992 9.413048 CTGCGGTATTTTGTTAAAAATAAAGGA 57.587 29.630 5.46 4.17 45.37 3.36
4889 5993 9.760077 TGCGGTATTTTGTTAAAAATAAAGGAA 57.240 25.926 5.46 0.00 45.37 3.36
4903 6007 6.600882 AATAAAGGAATGATCATCATGGGC 57.399 37.500 9.06 0.00 37.15 5.36
4904 6008 2.195741 AGGAATGATCATCATGGGCG 57.804 50.000 9.06 0.00 37.15 6.13
4905 6009 1.701292 AGGAATGATCATCATGGGCGA 59.299 47.619 9.06 0.00 37.15 5.54
4906 6010 2.307980 AGGAATGATCATCATGGGCGAT 59.692 45.455 9.06 0.00 37.15 4.58
4907 6011 2.422479 GGAATGATCATCATGGGCGATG 59.578 50.000 9.06 2.72 43.50 3.84
4913 6017 2.232399 TCATCATGGGCGATGAATTGG 58.768 47.619 16.24 6.84 46.76 3.16
4914 6018 2.158638 TCATCATGGGCGATGAATTGGA 60.159 45.455 16.24 8.88 46.76 3.53
4915 6019 2.662535 TCATGGGCGATGAATTGGAT 57.337 45.000 9.92 0.00 38.19 3.41
4916 6020 2.232399 TCATGGGCGATGAATTGGATG 58.768 47.619 9.92 0.00 38.19 3.51
4917 6021 0.963962 ATGGGCGATGAATTGGATGC 59.036 50.000 0.00 0.00 0.00 3.91
4918 6022 1.283793 GGGCGATGAATTGGATGCG 59.716 57.895 0.00 0.00 0.00 4.73
4919 6023 1.165907 GGGCGATGAATTGGATGCGA 61.166 55.000 0.00 0.00 0.00 5.10
4920 6024 0.877071 GGCGATGAATTGGATGCGAT 59.123 50.000 0.00 0.00 0.00 4.58
4921 6025 2.076100 GGCGATGAATTGGATGCGATA 58.924 47.619 0.00 0.00 0.00 2.92
4922 6026 2.483877 GGCGATGAATTGGATGCGATAA 59.516 45.455 0.00 0.00 0.00 1.75
4923 6027 3.482786 GCGATGAATTGGATGCGATAAC 58.517 45.455 0.00 0.00 0.00 1.89
4924 6028 3.667960 GCGATGAATTGGATGCGATAACC 60.668 47.826 0.00 0.00 0.00 2.85
4925 6029 3.498018 CGATGAATTGGATGCGATAACCA 59.502 43.478 0.00 0.00 0.00 3.67
4926 6030 4.024133 CGATGAATTGGATGCGATAACCAA 60.024 41.667 0.00 0.00 45.64 3.67
4931 6035 3.836365 TGGATGCGATAACCAATCTGA 57.164 42.857 0.00 0.00 31.87 3.27
4932 6036 4.149511 TGGATGCGATAACCAATCTGAA 57.850 40.909 0.00 0.00 31.87 3.02
4933 6037 4.129380 TGGATGCGATAACCAATCTGAAG 58.871 43.478 0.00 0.00 31.87 3.02
4934 6038 4.141733 TGGATGCGATAACCAATCTGAAGA 60.142 41.667 0.00 0.00 31.87 2.87
4935 6039 4.450419 GGATGCGATAACCAATCTGAAGAG 59.550 45.833 0.00 0.00 31.87 2.85
4936 6040 4.471904 TGCGATAACCAATCTGAAGAGT 57.528 40.909 0.00 0.00 31.87 3.24
4937 6041 4.832248 TGCGATAACCAATCTGAAGAGTT 58.168 39.130 0.00 0.00 31.87 3.01
4938 6042 5.245531 TGCGATAACCAATCTGAAGAGTTT 58.754 37.500 0.00 0.00 31.87 2.66
4939 6043 5.122239 TGCGATAACCAATCTGAAGAGTTTG 59.878 40.000 0.00 0.00 31.87 2.93
4940 6044 5.563842 CGATAACCAATCTGAAGAGTTTGC 58.436 41.667 0.00 0.00 30.39 3.68
4941 6045 5.122239 CGATAACCAATCTGAAGAGTTTGCA 59.878 40.000 0.00 0.00 30.39 4.08
4942 6046 6.183360 CGATAACCAATCTGAAGAGTTTGCAT 60.183 38.462 0.00 0.00 30.39 3.96
4943 6047 5.796424 AACCAATCTGAAGAGTTTGCATT 57.204 34.783 0.00 0.00 30.39 3.56
4944 6048 6.899393 AACCAATCTGAAGAGTTTGCATTA 57.101 33.333 0.00 0.00 30.39 1.90
4945 6049 6.259550 ACCAATCTGAAGAGTTTGCATTAC 57.740 37.500 0.00 0.00 30.39 1.89
4946 6050 5.183904 ACCAATCTGAAGAGTTTGCATTACC 59.816 40.000 0.00 0.00 30.39 2.85
4947 6051 5.183713 CCAATCTGAAGAGTTTGCATTACCA 59.816 40.000 0.00 0.00 30.39 3.25
4948 6052 6.127535 CCAATCTGAAGAGTTTGCATTACCAT 60.128 38.462 0.00 0.00 30.39 3.55
4949 6053 5.885230 TCTGAAGAGTTTGCATTACCATG 57.115 39.130 0.00 0.00 0.00 3.66
4950 6054 5.316167 TCTGAAGAGTTTGCATTACCATGT 58.684 37.500 0.00 0.00 32.28 3.21
4951 6055 6.472016 TCTGAAGAGTTTGCATTACCATGTA 58.528 36.000 0.00 0.00 32.28 2.29
4952 6056 7.112122 TCTGAAGAGTTTGCATTACCATGTAT 58.888 34.615 0.00 0.00 32.28 2.29
4953 6057 8.264347 TCTGAAGAGTTTGCATTACCATGTATA 58.736 33.333 0.00 0.00 32.28 1.47
4954 6058 8.437360 TGAAGAGTTTGCATTACCATGTATAG 57.563 34.615 0.00 0.00 32.28 1.31
4955 6059 8.046708 TGAAGAGTTTGCATTACCATGTATAGT 58.953 33.333 0.00 0.00 32.28 2.12
4956 6060 9.542462 GAAGAGTTTGCATTACCATGTATAGTA 57.458 33.333 0.00 0.00 32.28 1.82
4957 6061 9.547753 AAGAGTTTGCATTACCATGTATAGTAG 57.452 33.333 0.00 0.00 32.28 2.57
4958 6062 8.924303 AGAGTTTGCATTACCATGTATAGTAGA 58.076 33.333 0.00 0.00 32.28 2.59
4959 6063 9.542462 GAGTTTGCATTACCATGTATAGTAGAA 57.458 33.333 0.00 0.00 32.28 2.10
4960 6064 9.899661 AGTTTGCATTACCATGTATAGTAGAAA 57.100 29.630 0.00 0.00 32.28 2.52
4963 6067 9.674068 TTGCATTACCATGTATAGTAGAAAACA 57.326 29.630 0.00 0.00 32.28 2.83
4964 6068 9.674068 TGCATTACCATGTATAGTAGAAAACAA 57.326 29.630 0.00 0.00 32.28 2.83
4967 6071 6.903883 ACCATGTATAGTAGAAAACAAGCG 57.096 37.500 0.00 0.00 0.00 4.68
4968 6072 5.293569 ACCATGTATAGTAGAAAACAAGCGC 59.706 40.000 0.00 0.00 0.00 5.92
4969 6073 5.293324 CCATGTATAGTAGAAAACAAGCGCA 59.707 40.000 11.47 0.00 0.00 6.09
4970 6074 6.017934 CCATGTATAGTAGAAAACAAGCGCAT 60.018 38.462 11.47 0.00 0.00 4.73
4971 6075 7.170828 CCATGTATAGTAGAAAACAAGCGCATA 59.829 37.037 11.47 0.00 0.00 3.14
4972 6076 8.547894 CATGTATAGTAGAAAACAAGCGCATAA 58.452 33.333 11.47 0.00 0.00 1.90
4973 6077 8.126871 TGTATAGTAGAAAACAAGCGCATAAG 57.873 34.615 11.47 0.00 0.00 1.73
4974 6078 7.977293 TGTATAGTAGAAAACAAGCGCATAAGA 59.023 33.333 11.47 0.00 0.00 2.10
4975 6079 5.532025 AGTAGAAAACAAGCGCATAAGAC 57.468 39.130 11.47 0.00 0.00 3.01
4976 6080 4.994852 AGTAGAAAACAAGCGCATAAGACA 59.005 37.500 11.47 0.00 0.00 3.41
4977 6081 4.147219 AGAAAACAAGCGCATAAGACAC 57.853 40.909 11.47 0.00 0.00 3.67
4978 6082 3.563808 AGAAAACAAGCGCATAAGACACA 59.436 39.130 11.47 0.00 0.00 3.72
4979 6083 2.969443 AACAAGCGCATAAGACACAC 57.031 45.000 11.47 0.00 0.00 3.82
4980 6084 1.877637 ACAAGCGCATAAGACACACA 58.122 45.000 11.47 0.00 0.00 3.72
4981 6085 2.426522 ACAAGCGCATAAGACACACAT 58.573 42.857 11.47 0.00 0.00 3.21
4982 6086 3.595173 ACAAGCGCATAAGACACACATA 58.405 40.909 11.47 0.00 0.00 2.29
5027 6131 1.447317 GGGCGATGAATTGGATGCGT 61.447 55.000 0.00 0.00 0.00 5.24
5050 6154 6.568462 CGTTAACCAATCTGAAGAGTTTGCAT 60.568 38.462 0.00 0.00 30.39 3.96
5051 6155 5.796424 AACCAATCTGAAGAGTTTGCATT 57.204 34.783 0.00 0.00 30.39 3.56
5052 6156 6.899393 AACCAATCTGAAGAGTTTGCATTA 57.101 33.333 0.00 0.00 30.39 1.90
5053 6157 6.259550 ACCAATCTGAAGAGTTTGCATTAC 57.740 37.500 0.00 0.00 30.39 1.89
5054 6158 5.183904 ACCAATCTGAAGAGTTTGCATTACC 59.816 40.000 0.00 0.00 30.39 2.85
5055 6159 5.183713 CCAATCTGAAGAGTTTGCATTACCA 59.816 40.000 0.00 0.00 30.39 3.25
5056 6160 6.127535 CCAATCTGAAGAGTTTGCATTACCAT 60.128 38.462 0.00 0.00 30.39 3.55
5057 6161 5.885230 TCTGAAGAGTTTGCATTACCATG 57.115 39.130 0.00 0.00 0.00 3.66
5058 6162 5.316167 TCTGAAGAGTTTGCATTACCATGT 58.684 37.500 0.00 0.00 32.28 3.21
5059 6163 6.472016 TCTGAAGAGTTTGCATTACCATGTA 58.528 36.000 0.00 0.00 32.28 2.29
5060 6164 7.112122 TCTGAAGAGTTTGCATTACCATGTAT 58.888 34.615 0.00 0.00 32.28 2.29
5061 6165 8.264347 TCTGAAGAGTTTGCATTACCATGTATA 58.736 33.333 0.00 0.00 32.28 1.47
5062 6166 8.437360 TGAAGAGTTTGCATTACCATGTATAG 57.563 34.615 0.00 0.00 32.28 1.31
5063 6167 8.046708 TGAAGAGTTTGCATTACCATGTATAGT 58.953 33.333 0.00 0.00 32.28 2.12
5064 6168 9.542462 GAAGAGTTTGCATTACCATGTATAGTA 57.458 33.333 0.00 0.00 32.28 1.82
5065 6169 9.547753 AAGAGTTTGCATTACCATGTATAGTAG 57.452 33.333 0.00 0.00 32.28 2.57
5066 6170 8.924303 AGAGTTTGCATTACCATGTATAGTAGA 58.076 33.333 0.00 0.00 32.28 2.59
5067 6171 9.542462 GAGTTTGCATTACCATGTATAGTAGAA 57.458 33.333 0.00 0.00 32.28 2.10
5068 6172 9.899661 AGTTTGCATTACCATGTATAGTAGAAA 57.100 29.630 0.00 0.00 32.28 2.52
5071 6175 9.674068 TTGCATTACCATGTATAGTAGAAAACA 57.326 29.630 0.00 0.00 32.28 2.83
5072 6176 9.674068 TGCATTACCATGTATAGTAGAAAACAA 57.326 29.630 0.00 0.00 32.28 2.83
5075 6179 6.903883 ACCATGTATAGTAGAAAACAAGCG 57.096 37.500 0.00 0.00 0.00 4.68
5076 6180 5.293569 ACCATGTATAGTAGAAAACAAGCGC 59.706 40.000 0.00 0.00 0.00 5.92
5077 6181 5.293324 CCATGTATAGTAGAAAACAAGCGCA 59.707 40.000 11.47 0.00 0.00 6.09
5078 6182 6.017934 CCATGTATAGTAGAAAACAAGCGCAT 60.018 38.462 11.47 0.00 0.00 4.73
5079 6183 7.170828 CCATGTATAGTAGAAAACAAGCGCATA 59.829 37.037 11.47 0.00 0.00 3.14
5080 6184 8.547894 CATGTATAGTAGAAAACAAGCGCATAA 58.452 33.333 11.47 0.00 0.00 1.90
5081 6185 8.126871 TGTATAGTAGAAAACAAGCGCATAAG 57.873 34.615 11.47 0.00 0.00 1.73
5082 6186 7.977293 TGTATAGTAGAAAACAAGCGCATAAGA 59.023 33.333 11.47 0.00 0.00 2.10
5083 6187 5.532025 AGTAGAAAACAAGCGCATAAGAC 57.468 39.130 11.47 0.00 0.00 3.01
5084 6188 4.994852 AGTAGAAAACAAGCGCATAAGACA 59.005 37.500 11.47 0.00 0.00 3.41
5085 6189 4.147219 AGAAAACAAGCGCATAAGACAC 57.853 40.909 11.47 0.00 0.00 3.67
5086 6190 3.563808 AGAAAACAAGCGCATAAGACACA 59.436 39.130 11.47 0.00 0.00 3.72
5087 6191 2.969443 AACAAGCGCATAAGACACAC 57.031 45.000 11.47 0.00 0.00 3.82
5088 6192 1.877637 ACAAGCGCATAAGACACACA 58.122 45.000 11.47 0.00 0.00 3.72
5089 6193 2.426522 ACAAGCGCATAAGACACACAT 58.573 42.857 11.47 0.00 0.00 3.21
5090 6194 3.595173 ACAAGCGCATAAGACACACATA 58.405 40.909 11.47 0.00 0.00 2.29
5091 6195 4.191544 ACAAGCGCATAAGACACACATAT 58.808 39.130 11.47 0.00 0.00 1.78
5092 6196 4.034394 ACAAGCGCATAAGACACACATATG 59.966 41.667 11.47 0.00 34.51 1.78
5093 6197 3.797039 AGCGCATAAGACACACATATGT 58.203 40.909 11.47 1.41 40.80 2.29
5094 6198 4.944048 AGCGCATAAGACACACATATGTA 58.056 39.130 11.47 0.00 36.72 2.29
5095 6199 4.745125 AGCGCATAAGACACACATATGTAC 59.255 41.667 11.47 1.11 36.72 2.90
5096 6200 4.745125 GCGCATAAGACACACATATGTACT 59.255 41.667 8.32 3.41 36.72 2.73
5097 6201 5.107837 GCGCATAAGACACACATATGTACTC 60.108 44.000 8.32 3.47 36.72 2.59
5098 6202 5.402568 CGCATAAGACACACATATGTACTCC 59.597 44.000 8.32 0.00 36.72 3.85
5099 6203 5.696724 GCATAAGACACACATATGTACTCCC 59.303 44.000 8.32 0.00 36.72 4.30
5100 6204 6.463049 GCATAAGACACACATATGTACTCCCT 60.463 42.308 8.32 0.00 36.72 4.20
5101 6205 5.599999 AAGACACACATATGTACTCCCTC 57.400 43.478 8.32 0.00 36.72 4.30
5102 6206 3.961408 AGACACACATATGTACTCCCTCC 59.039 47.826 8.32 0.00 36.72 4.30
5103 6207 2.693591 ACACACATATGTACTCCCTCCG 59.306 50.000 8.32 0.00 36.72 4.63
5104 6208 1.687123 ACACATATGTACTCCCTCCGC 59.313 52.381 8.32 0.00 37.26 5.54
5105 6209 1.686587 CACATATGTACTCCCTCCGCA 59.313 52.381 8.32 0.00 0.00 5.69
5106 6210 2.102420 CACATATGTACTCCCTCCGCAA 59.898 50.000 8.32 0.00 0.00 4.85
5107 6211 2.769663 ACATATGTACTCCCTCCGCAAA 59.230 45.455 6.56 0.00 0.00 3.68
5108 6212 3.181465 ACATATGTACTCCCTCCGCAAAG 60.181 47.826 6.56 0.00 0.00 2.77
5109 6213 1.568504 ATGTACTCCCTCCGCAAAGA 58.431 50.000 0.00 0.00 0.00 2.52
5110 6214 1.344065 TGTACTCCCTCCGCAAAGAA 58.656 50.000 0.00 0.00 0.00 2.52
5111 6215 1.695242 TGTACTCCCTCCGCAAAGAAA 59.305 47.619 0.00 0.00 0.00 2.52
5112 6216 2.304761 TGTACTCCCTCCGCAAAGAAAT 59.695 45.455 0.00 0.00 0.00 2.17
5113 6217 3.516300 TGTACTCCCTCCGCAAAGAAATA 59.484 43.478 0.00 0.00 0.00 1.40
5114 6218 3.933861 ACTCCCTCCGCAAAGAAATAT 57.066 42.857 0.00 0.00 0.00 1.28
5115 6219 5.364446 TGTACTCCCTCCGCAAAGAAATATA 59.636 40.000 0.00 0.00 0.00 0.86
5116 6220 5.367945 ACTCCCTCCGCAAAGAAATATAA 57.632 39.130 0.00 0.00 0.00 0.98
5117 6221 5.368989 ACTCCCTCCGCAAAGAAATATAAG 58.631 41.667 0.00 0.00 0.00 1.73
5118 6222 5.130477 ACTCCCTCCGCAAAGAAATATAAGA 59.870 40.000 0.00 0.00 0.00 2.10
5119 6223 5.611374 TCCCTCCGCAAAGAAATATAAGAG 58.389 41.667 0.00 0.00 0.00 2.85
5120 6224 4.214332 CCCTCCGCAAAGAAATATAAGAGC 59.786 45.833 0.00 0.00 0.00 4.09
5121 6225 4.084328 CCTCCGCAAAGAAATATAAGAGCG 60.084 45.833 0.00 0.00 43.13 5.03
5122 6226 4.439057 TCCGCAAAGAAATATAAGAGCGT 58.561 39.130 0.00 0.00 42.08 5.07
5123 6227 4.873827 TCCGCAAAGAAATATAAGAGCGTT 59.126 37.500 0.00 0.00 42.08 4.84
5124 6228 5.353123 TCCGCAAAGAAATATAAGAGCGTTT 59.647 36.000 0.00 0.00 42.08 3.60
5125 6229 6.535865 TCCGCAAAGAAATATAAGAGCGTTTA 59.464 34.615 0.00 0.00 42.08 2.01
5126 6230 7.064847 TCCGCAAAGAAATATAAGAGCGTTTAA 59.935 33.333 0.00 0.00 42.08 1.52
5127 6231 7.694784 CCGCAAAGAAATATAAGAGCGTTTAAA 59.305 33.333 0.00 0.00 42.08 1.52
5128 6232 9.221775 CGCAAAGAAATATAAGAGCGTTTAAAT 57.778 29.630 0.00 0.00 39.18 1.40
5144 6248 9.042008 AGCGTTTAAATCACTACAGTATATTGG 57.958 33.333 0.00 0.00 0.00 3.16
5157 6261 6.058183 ACAGTATATTGGAAGGAATGCAGAC 58.942 40.000 0.00 0.00 0.00 3.51
5158 6262 5.471456 CAGTATATTGGAAGGAATGCAGACC 59.529 44.000 4.06 4.06 0.00 3.85
5238 6646 5.591099 ACTGGTACTTCAAACAAAATGCTG 58.409 37.500 0.00 0.00 0.00 4.41
5282 6696 2.109126 GCCACTCAGATCCCGCAAC 61.109 63.158 0.00 0.00 0.00 4.17
5294 6709 0.594110 CCCGCAACGCTTCCTTAAAA 59.406 50.000 0.00 0.00 0.00 1.52
5311 6726 6.210584 TCCTTAAAATTTCACTCAATCCACCC 59.789 38.462 0.00 0.00 0.00 4.61
5341 6757 5.617087 GCCGTTATTGAAACTTCCTTGAGAC 60.617 44.000 0.00 0.00 0.00 3.36
5344 6760 7.072030 CGTTATTGAAACTTCCTTGAGACTTG 58.928 38.462 0.00 0.00 0.00 3.16
5346 6762 3.820557 TGAAACTTCCTTGAGACTTGGG 58.179 45.455 0.00 0.00 0.00 4.12
5348 6764 4.080015 TGAAACTTCCTTGAGACTTGGGAA 60.080 41.667 0.00 0.00 36.56 3.97
5349 6765 4.519906 AACTTCCTTGAGACTTGGGAAA 57.480 40.909 0.00 0.00 37.39 3.13
5350 6766 4.519906 ACTTCCTTGAGACTTGGGAAAA 57.480 40.909 0.00 0.00 37.39 2.29
5351 6767 4.867086 ACTTCCTTGAGACTTGGGAAAAA 58.133 39.130 0.00 0.00 37.39 1.94
5391 6807 8.117813 ACCCTTACAAAATAATTGTGTACCTG 57.882 34.615 4.19 0.00 34.11 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 0.749649 TTCGGCAGCAAACATTGGTT 59.250 45.000 0.00 0.00 39.79 3.67
108 109 0.322636 ACGACTCGGATGTGGAGACT 60.323 55.000 2.98 0.00 35.49 3.24
162 163 0.836400 AGATGGAGTTGACCCCGTGT 60.836 55.000 0.00 0.00 0.00 4.49
243 244 3.458163 GGGATCACTCGCCACCGA 61.458 66.667 0.00 0.00 42.01 4.69
265 267 4.498520 CGCATCACCCTCGTCGCT 62.499 66.667 0.00 0.00 0.00 4.93
559 564 1.304962 GGCCCCAACCCGAGAAAAT 60.305 57.895 0.00 0.00 0.00 1.82
587 592 3.732471 GCATAAATTTTTAGGTGGCGCGA 60.732 43.478 12.10 0.00 0.00 5.87
619 624 2.284625 ATCAGACTCCGCACCCCA 60.285 61.111 0.00 0.00 0.00 4.96
623 628 2.105128 CCCGATCAGACTCCGCAC 59.895 66.667 0.00 0.00 0.00 5.34
629 634 1.557269 AAAGCCTGCCCGATCAGACT 61.557 55.000 5.61 0.00 36.19 3.24
635 640 2.438434 CCGAAAAGCCTGCCCGAT 60.438 61.111 0.00 0.00 0.00 4.18
649 654 0.903942 AAAATACGGGTACAGGCCGA 59.096 50.000 14.86 1.02 0.00 5.54
670 675 5.491070 GTCCCTTACCTGTAAAATAACCGT 58.509 41.667 0.00 0.00 0.00 4.83
683 688 2.432300 CCGCATCCGTCCCTTACCT 61.432 63.158 0.00 0.00 0.00 3.08
707 712 5.555017 TCTTTGCTGTTTCTGCTCTCTATT 58.445 37.500 0.00 0.00 0.00 1.73
708 713 5.157940 TCTTTGCTGTTTCTGCTCTCTAT 57.842 39.130 0.00 0.00 0.00 1.98
714 719 3.505293 GGATCTTCTTTGCTGTTTCTGCT 59.495 43.478 0.00 0.00 0.00 4.24
715 720 3.669023 CGGATCTTCTTTGCTGTTTCTGC 60.669 47.826 0.00 0.00 0.00 4.26
716 721 3.748048 TCGGATCTTCTTTGCTGTTTCTG 59.252 43.478 0.00 0.00 0.00 3.02
717 722 3.748568 GTCGGATCTTCTTTGCTGTTTCT 59.251 43.478 0.00 0.00 0.00 2.52
718 723 3.423645 CGTCGGATCTTCTTTGCTGTTTC 60.424 47.826 0.00 0.00 0.00 2.78
719 724 2.480419 CGTCGGATCTTCTTTGCTGTTT 59.520 45.455 0.00 0.00 0.00 2.83
727 732 1.677637 GAGGCCCGTCGGATCTTCTT 61.678 60.000 14.39 0.00 0.00 2.52
778 783 0.526211 TGATGGAGTTGGACGTCTCG 59.474 55.000 16.46 0.00 0.00 4.04
877 906 1.291877 CGGCAGAGGAAACGAACAGG 61.292 60.000 0.00 0.00 0.00 4.00
1277 1312 2.989422 ACCAAAGCACAATTAGCGAC 57.011 45.000 0.00 0.00 37.01 5.19
1295 1330 2.221055 CCAACAGCGACAGAGTGTTAAC 59.779 50.000 0.00 0.00 33.10 2.01
1300 1335 1.261619 GAAACCAACAGCGACAGAGTG 59.738 52.381 0.00 0.00 0.00 3.51
1325 1360 2.013563 GCGATGCCTCTTGTCATCCAA 61.014 52.381 0.00 0.00 36.60 3.53
1502 1548 3.575687 AGAGGCTCCAAAAATCCACTTTG 59.424 43.478 11.71 0.00 34.24 2.77
1507 1553 1.628340 TCGAGAGGCTCCAAAAATCCA 59.372 47.619 11.71 0.00 0.00 3.41
1508 1554 2.403252 TCGAGAGGCTCCAAAAATCC 57.597 50.000 11.71 0.00 0.00 3.01
1560 1606 8.138365 TCAGATGTTGTGTAAACTGTAAAGTC 57.862 34.615 0.00 0.00 0.00 3.01
1717 1771 6.824499 TAGTTCACAAGAGTGCACTCTGCC 62.824 50.000 42.04 26.53 46.96 4.85
1792 1846 6.332630 CGTCCCAAAATATGAGAGCATTTTT 58.667 36.000 0.00 0.00 37.29 1.94
1793 1847 5.163519 CCGTCCCAAAATATGAGAGCATTTT 60.164 40.000 0.00 0.00 35.30 1.82
1794 1848 4.339247 CCGTCCCAAAATATGAGAGCATTT 59.661 41.667 0.00 0.00 35.94 2.32
1795 1849 3.885297 CCGTCCCAAAATATGAGAGCATT 59.115 43.478 0.00 0.00 35.94 3.56
1796 1850 3.136443 TCCGTCCCAAAATATGAGAGCAT 59.864 43.478 0.00 0.00 38.54 3.79
1797 1851 2.503765 TCCGTCCCAAAATATGAGAGCA 59.496 45.455 0.00 0.00 0.00 4.26
1798 1852 3.134458 CTCCGTCCCAAAATATGAGAGC 58.866 50.000 0.00 0.00 0.00 4.09
1799 1853 3.495100 CCCTCCGTCCCAAAATATGAGAG 60.495 52.174 0.00 0.00 0.00 3.20
1800 1854 2.438021 CCCTCCGTCCCAAAATATGAGA 59.562 50.000 0.00 0.00 0.00 3.27
1801 1855 2.438021 TCCCTCCGTCCCAAAATATGAG 59.562 50.000 0.00 0.00 0.00 2.90
1802 1856 2.438021 CTCCCTCCGTCCCAAAATATGA 59.562 50.000 0.00 0.00 0.00 2.15
1803 1857 2.172717 ACTCCCTCCGTCCCAAAATATG 59.827 50.000 0.00 0.00 0.00 1.78
1804 1858 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
1805 1859 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1806 1860 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
1807 1861 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
1808 1862 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
1809 1863 2.852714 TATTACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
1810 1864 3.339713 AATATTACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
1811 1865 5.813513 TTAAATATTACTCCCTCCGTCCC 57.186 43.478 0.00 0.00 0.00 4.46
1812 1866 6.766429 ACATTAAATATTACTCCCTCCGTCC 58.234 40.000 0.00 0.00 0.00 4.79
1813 1867 7.172703 CCAACATTAAATATTACTCCCTCCGTC 59.827 40.741 0.00 0.00 0.00 4.79
1814 1868 6.996282 CCAACATTAAATATTACTCCCTCCGT 59.004 38.462 0.00 0.00 0.00 4.69
1815 1869 6.430000 CCCAACATTAAATATTACTCCCTCCG 59.570 42.308 0.00 0.00 0.00 4.63
1816 1870 6.208797 GCCCAACATTAAATATTACTCCCTCC 59.791 42.308 0.00 0.00 0.00 4.30
1817 1871 6.208797 GGCCCAACATTAAATATTACTCCCTC 59.791 42.308 0.00 0.00 0.00 4.30
1818 1872 6.075315 GGCCCAACATTAAATATTACTCCCT 58.925 40.000 0.00 0.00 0.00 4.20
1819 1873 5.836358 TGGCCCAACATTAAATATTACTCCC 59.164 40.000 0.00 0.00 0.00 4.30
1820 1874 6.969993 TGGCCCAACATTAAATATTACTCC 57.030 37.500 0.00 0.00 0.00 3.85
1821 1875 9.476202 GAATTGGCCCAACATTAAATATTACTC 57.524 33.333 0.00 0.00 0.00 2.59
1822 1876 9.212593 AGAATTGGCCCAACATTAAATATTACT 57.787 29.630 0.00 0.00 0.00 2.24
1984 2038 3.198635 TGCTAAGAACAGAAGAGGATGGG 59.801 47.826 0.00 0.00 0.00 4.00
2169 2226 6.981559 GGAAAACAATGCAAACCAAACTAGTA 59.018 34.615 0.00 0.00 0.00 1.82
2170 2227 5.815222 GGAAAACAATGCAAACCAAACTAGT 59.185 36.000 0.00 0.00 0.00 2.57
2171 2228 6.048509 AGGAAAACAATGCAAACCAAACTAG 58.951 36.000 0.00 0.00 0.00 2.57
2234 2291 5.836358 AGAGTCCAGACTATTGGGATAAGAC 59.164 44.000 0.00 0.00 42.66 3.01
2244 2301 3.767309 AGGTCCAGAGTCCAGACTATT 57.233 47.619 0.00 0.00 42.66 1.73
2268 2326 8.648097 CATACATATAGTGATAAAGGTTGCGAC 58.352 37.037 0.00 0.00 0.00 5.19
2339 2397 2.258755 GTGACAACTTGTGCCAACAAC 58.741 47.619 0.00 0.00 41.41 3.32
2514 2572 7.451566 GGGGGCATATACAAGATTACATTTTCT 59.548 37.037 0.00 0.00 0.00 2.52
2548 2606 5.509501 CGCATAAAAGCCCCATTGACATTAT 60.510 40.000 0.00 0.00 0.00 1.28
2651 2711 1.357258 CCAGCAGCATCACACTCGTC 61.357 60.000 0.00 0.00 0.00 4.20
2747 2807 1.468985 CCACACAAACTCCAACACCA 58.531 50.000 0.00 0.00 0.00 4.17
2756 2816 0.184933 TAAGGCCAGCCACACAAACT 59.815 50.000 12.03 0.00 38.92 2.66
2974 4040 0.392706 CACCCTTCAAAGGTTTGGGC 59.607 55.000 7.96 0.00 44.98 5.36
3065 4131 5.571357 CGTAAAATGAAGTGTTTATGGGTGC 59.429 40.000 0.00 0.00 0.00 5.01
3123 4189 8.219868 TCTTCATGCATTGAGAAAGGGATAATA 58.780 33.333 0.00 0.00 35.27 0.98
3124 4190 7.064866 TCTTCATGCATTGAGAAAGGGATAAT 58.935 34.615 0.00 0.00 35.27 1.28
3185 4252 7.016296 TCCTGAAACATTAGGGAGGAAAATTT 58.984 34.615 0.00 0.00 34.76 1.82
3217 4284 4.274950 TCAATTCGGTTGTTCTTCTTGACC 59.725 41.667 2.25 0.00 38.95 4.02
3250 4317 3.998341 CTGCTCCAAAAATTCCCAACATG 59.002 43.478 0.00 0.00 0.00 3.21
4017 5104 8.635877 AGAGTTTATCGAGCTTATTGTAACAG 57.364 34.615 0.00 0.00 0.00 3.16
4052 5139 3.148823 GCAGTGAGCGAACAAACAC 57.851 52.632 0.00 0.00 0.00 3.32
4155 5242 3.304928 GCAGCTGCTTAACTGACAACAAT 60.305 43.478 31.33 0.00 35.90 2.71
4349 5436 2.561209 TGTAGGAGGCCTGGTTATCA 57.439 50.000 12.00 0.00 34.61 2.15
4352 5439 1.079825 TCCTTGTAGGAGGCCTGGTTA 59.920 52.381 12.00 0.00 40.06 2.85
4353 5440 0.178873 TCCTTGTAGGAGGCCTGGTT 60.179 55.000 12.00 0.00 40.06 3.67
4410 5497 3.375610 CGAGTATCAGTCTATGCGCCTAT 59.624 47.826 4.18 0.00 33.17 2.57
4422 5509 3.252701 CCTATTGCCGTACGAGTATCAGT 59.747 47.826 18.76 5.87 33.17 3.41
4429 5516 0.102481 ACTGCCTATTGCCGTACGAG 59.898 55.000 18.76 8.15 35.45 4.18
4432 5519 2.896168 TGTAACTGCCTATTGCCGTAC 58.104 47.619 0.00 0.00 36.28 3.67
4435 5522 2.080693 TGTTGTAACTGCCTATTGCCG 58.919 47.619 0.00 0.00 40.16 5.69
4439 5526 6.942576 ACTGAGAATTGTTGTAACTGCCTATT 59.057 34.615 0.00 0.00 0.00 1.73
4446 5534 6.174720 TCCTCACTGAGAATTGTTGTAACT 57.825 37.500 7.69 0.00 0.00 2.24
4451 5539 5.709164 AGGATTTCCTCACTGAGAATTGTTG 59.291 40.000 7.69 0.00 44.77 3.33
4491 5583 5.734720 TGATATCTCAAACTGGACAGGTTC 58.265 41.667 3.98 0.00 35.91 3.62
4514 5606 9.849166 TCAAAATTTTACAACGAGAAGAAAGTT 57.151 25.926 2.44 0.00 0.00 2.66
4601 5697 1.679139 TTCTTATGCGGGCTGAATGG 58.321 50.000 0.00 0.00 0.00 3.16
4724 5828 6.744112 TGATTTTTCTCAACAAAAGCCGTAT 58.256 32.000 0.00 0.00 30.09 3.06
4728 5832 6.313658 ACAACTGATTTTTCTCAACAAAAGCC 59.686 34.615 0.00 0.00 30.09 4.35
4752 5856 8.031848 TCATTTGGTTATTGTAGTTTCCGTAC 57.968 34.615 0.00 0.00 0.00 3.67
4755 5859 7.148154 TGGATCATTTGGTTATTGTAGTTTCCG 60.148 37.037 0.00 0.00 0.00 4.30
4785 5889 7.599630 ATTAGCAAATTTTTGTAGCACATGG 57.400 32.000 0.00 0.00 40.24 3.66
4849 5953 2.032680 ACCGCAGTTAACTTGTGTGT 57.967 45.000 5.07 6.25 0.00 3.72
4851 5955 5.066764 ACAAAATACCGCAGTTAACTTGTGT 59.933 36.000 5.07 5.71 0.00 3.72
4862 5966 9.413048 TCCTTTATTTTTAACAAAATACCGCAG 57.587 29.630 0.59 0.00 42.22 5.18
4877 5981 7.935210 GCCCATGATGATCATTCCTTTATTTTT 59.065 33.333 10.14 0.00 34.28 1.94
4878 5982 7.447594 GCCCATGATGATCATTCCTTTATTTT 58.552 34.615 10.14 0.00 34.28 1.82
4879 5983 6.294899 CGCCCATGATGATCATTCCTTTATTT 60.295 38.462 10.14 0.00 34.28 1.40
4880 5984 5.184479 CGCCCATGATGATCATTCCTTTATT 59.816 40.000 10.14 0.00 34.28 1.40
4881 5985 4.703575 CGCCCATGATGATCATTCCTTTAT 59.296 41.667 10.14 0.00 34.28 1.40
4882 5986 4.074259 CGCCCATGATGATCATTCCTTTA 58.926 43.478 10.14 0.00 34.28 1.85
4883 5987 2.889045 CGCCCATGATGATCATTCCTTT 59.111 45.455 10.14 0.00 34.28 3.11
4884 5988 2.107031 TCGCCCATGATGATCATTCCTT 59.893 45.455 10.14 0.00 34.28 3.36
4885 5989 1.701292 TCGCCCATGATGATCATTCCT 59.299 47.619 10.14 0.00 34.28 3.36
4886 5990 2.189594 TCGCCCATGATGATCATTCC 57.810 50.000 10.14 0.00 34.28 3.01
4887 5991 3.759527 CATCGCCCATGATGATCATTC 57.240 47.619 10.14 4.08 46.98 2.67
4894 5998 2.232399 TCCAATTCATCGCCCATGATG 58.768 47.619 0.00 0.00 45.70 3.07
4895 5999 2.662535 TCCAATTCATCGCCCATGAT 57.337 45.000 0.00 0.00 41.42 2.45
4896 6000 2.232399 CATCCAATTCATCGCCCATGA 58.768 47.619 0.00 0.00 39.99 3.07
4897 6001 1.336517 GCATCCAATTCATCGCCCATG 60.337 52.381 0.00 0.00 0.00 3.66
4898 6002 0.963962 GCATCCAATTCATCGCCCAT 59.036 50.000 0.00 0.00 0.00 4.00
4899 6003 1.446516 CGCATCCAATTCATCGCCCA 61.447 55.000 0.00 0.00 0.00 5.36
4900 6004 1.165907 TCGCATCCAATTCATCGCCC 61.166 55.000 0.00 0.00 0.00 6.13
4901 6005 0.877071 ATCGCATCCAATTCATCGCC 59.123 50.000 0.00 0.00 0.00 5.54
4902 6006 3.482786 GTTATCGCATCCAATTCATCGC 58.517 45.455 0.00 0.00 0.00 4.58
4903 6007 3.498018 TGGTTATCGCATCCAATTCATCG 59.502 43.478 0.00 0.00 0.00 3.84
4904 6008 5.437289 TTGGTTATCGCATCCAATTCATC 57.563 39.130 0.00 0.00 36.48 2.92
4910 6014 4.149511 TCAGATTGGTTATCGCATCCAA 57.850 40.909 0.00 0.00 43.83 3.53
4911 6015 3.836365 TCAGATTGGTTATCGCATCCA 57.164 42.857 0.00 0.00 38.36 3.41
4912 6016 4.380531 TCTTCAGATTGGTTATCGCATCC 58.619 43.478 0.00 0.00 38.36 3.51
4913 6017 5.053145 ACTCTTCAGATTGGTTATCGCATC 58.947 41.667 0.00 0.00 38.36 3.91
4914 6018 5.028549 ACTCTTCAGATTGGTTATCGCAT 57.971 39.130 0.00 0.00 38.36 4.73
4915 6019 4.471904 ACTCTTCAGATTGGTTATCGCA 57.528 40.909 0.00 0.00 38.36 5.10
4916 6020 5.563842 CAAACTCTTCAGATTGGTTATCGC 58.436 41.667 0.00 0.00 38.36 4.58
4917 6021 5.122239 TGCAAACTCTTCAGATTGGTTATCG 59.878 40.000 0.00 0.00 38.36 2.92
4918 6022 6.500684 TGCAAACTCTTCAGATTGGTTATC 57.499 37.500 0.00 0.00 33.89 1.75
4919 6023 7.472334 AATGCAAACTCTTCAGATTGGTTAT 57.528 32.000 0.00 0.00 33.89 1.89
4920 6024 6.899393 AATGCAAACTCTTCAGATTGGTTA 57.101 33.333 0.00 0.00 33.89 2.85
4921 6025 5.796424 AATGCAAACTCTTCAGATTGGTT 57.204 34.783 0.00 0.00 33.89 3.67
4922 6026 5.183904 GGTAATGCAAACTCTTCAGATTGGT 59.816 40.000 0.00 0.00 33.89 3.67
4923 6027 5.183713 TGGTAATGCAAACTCTTCAGATTGG 59.816 40.000 0.00 0.00 33.89 3.16
4924 6028 6.258230 TGGTAATGCAAACTCTTCAGATTG 57.742 37.500 0.00 0.00 35.89 2.67
4925 6029 6.435277 ACATGGTAATGCAAACTCTTCAGATT 59.565 34.615 0.00 0.00 37.29 2.40
4926 6030 5.948162 ACATGGTAATGCAAACTCTTCAGAT 59.052 36.000 0.00 0.00 37.29 2.90
4927 6031 5.316167 ACATGGTAATGCAAACTCTTCAGA 58.684 37.500 0.00 0.00 37.29 3.27
4928 6032 5.633830 ACATGGTAATGCAAACTCTTCAG 57.366 39.130 0.00 0.00 37.29 3.02
4929 6033 8.046708 ACTATACATGGTAATGCAAACTCTTCA 58.953 33.333 0.00 0.00 37.29 3.02
4930 6034 8.438676 ACTATACATGGTAATGCAAACTCTTC 57.561 34.615 0.00 0.00 37.29 2.87
4931 6035 9.547753 CTACTATACATGGTAATGCAAACTCTT 57.452 33.333 0.00 0.00 37.29 2.85
4932 6036 8.924303 TCTACTATACATGGTAATGCAAACTCT 58.076 33.333 0.00 0.00 37.29 3.24
4933 6037 9.542462 TTCTACTATACATGGTAATGCAAACTC 57.458 33.333 0.00 0.00 37.29 3.01
4934 6038 9.899661 TTTCTACTATACATGGTAATGCAAACT 57.100 29.630 0.00 0.00 37.29 2.66
4937 6041 9.674068 TGTTTTCTACTATACATGGTAATGCAA 57.326 29.630 0.00 0.00 37.29 4.08
4938 6042 9.674068 TTGTTTTCTACTATACATGGTAATGCA 57.326 29.630 0.00 0.00 37.29 3.96
4941 6045 9.042008 CGCTTGTTTTCTACTATACATGGTAAT 57.958 33.333 0.00 0.00 0.00 1.89
4942 6046 7.010738 GCGCTTGTTTTCTACTATACATGGTAA 59.989 37.037 0.00 0.00 0.00 2.85
4943 6047 6.477688 GCGCTTGTTTTCTACTATACATGGTA 59.522 38.462 0.00 0.00 0.00 3.25
4944 6048 5.293569 GCGCTTGTTTTCTACTATACATGGT 59.706 40.000 0.00 0.00 0.00 3.55
4945 6049 5.293324 TGCGCTTGTTTTCTACTATACATGG 59.707 40.000 9.73 0.00 0.00 3.66
4946 6050 6.344572 TGCGCTTGTTTTCTACTATACATG 57.655 37.500 9.73 0.00 0.00 3.21
4947 6051 8.657074 TTATGCGCTTGTTTTCTACTATACAT 57.343 30.769 9.73 0.00 0.00 2.29
4948 6052 7.977293 TCTTATGCGCTTGTTTTCTACTATACA 59.023 33.333 9.73 0.00 0.00 2.29
4949 6053 8.267367 GTCTTATGCGCTTGTTTTCTACTATAC 58.733 37.037 9.73 0.00 0.00 1.47
4950 6054 7.977293 TGTCTTATGCGCTTGTTTTCTACTATA 59.023 33.333 9.73 0.00 0.00 1.31
4951 6055 6.816640 TGTCTTATGCGCTTGTTTTCTACTAT 59.183 34.615 9.73 0.00 0.00 2.12
4952 6056 6.090358 GTGTCTTATGCGCTTGTTTTCTACTA 59.910 38.462 9.73 0.00 0.00 1.82
4953 6057 4.994852 TGTCTTATGCGCTTGTTTTCTACT 59.005 37.500 9.73 0.00 0.00 2.57
4954 6058 5.080068 GTGTCTTATGCGCTTGTTTTCTAC 58.920 41.667 9.73 0.00 0.00 2.59
4955 6059 4.752604 TGTGTCTTATGCGCTTGTTTTCTA 59.247 37.500 9.73 0.00 0.00 2.10
4956 6060 3.563808 TGTGTCTTATGCGCTTGTTTTCT 59.436 39.130 9.73 0.00 0.00 2.52
4957 6061 3.664025 GTGTGTCTTATGCGCTTGTTTTC 59.336 43.478 9.73 0.00 0.00 2.29
4958 6062 3.066064 TGTGTGTCTTATGCGCTTGTTTT 59.934 39.130 9.73 0.00 0.00 2.43
4959 6063 2.616376 TGTGTGTCTTATGCGCTTGTTT 59.384 40.909 9.73 0.00 0.00 2.83
4960 6064 2.217750 TGTGTGTCTTATGCGCTTGTT 58.782 42.857 9.73 0.00 0.00 2.83
4961 6065 1.877637 TGTGTGTCTTATGCGCTTGT 58.122 45.000 9.73 0.00 0.00 3.16
4962 6066 4.801147 ATATGTGTGTCTTATGCGCTTG 57.199 40.909 9.73 0.00 0.00 4.01
4963 6067 6.918892 TTAATATGTGTGTCTTATGCGCTT 57.081 33.333 9.73 4.59 0.00 4.68
4964 6068 6.918892 TTTAATATGTGTGTCTTATGCGCT 57.081 33.333 9.73 0.00 0.00 5.92
4965 6069 7.962934 TTTTTAATATGTGTGTCTTATGCGC 57.037 32.000 0.00 0.00 0.00 6.09
5019 6123 3.342377 TCAGATTGGTTAACGCATCCA 57.658 42.857 10.55 0.00 0.00 3.41
5027 6131 6.899393 ATGCAAACTCTTCAGATTGGTTAA 57.101 33.333 0.00 0.00 33.89 2.01
5038 6142 8.438676 ACTATACATGGTAATGCAAACTCTTC 57.561 34.615 0.00 0.00 37.29 2.87
5050 6154 7.010738 GCGCTTGTTTTCTACTATACATGGTAA 59.989 37.037 0.00 0.00 0.00 2.85
5051 6155 6.477688 GCGCTTGTTTTCTACTATACATGGTA 59.522 38.462 0.00 0.00 0.00 3.25
5052 6156 5.293569 GCGCTTGTTTTCTACTATACATGGT 59.706 40.000 0.00 0.00 0.00 3.55
5053 6157 5.293324 TGCGCTTGTTTTCTACTATACATGG 59.707 40.000 9.73 0.00 0.00 3.66
5054 6158 6.344572 TGCGCTTGTTTTCTACTATACATG 57.655 37.500 9.73 0.00 0.00 3.21
5055 6159 8.657074 TTATGCGCTTGTTTTCTACTATACAT 57.343 30.769 9.73 0.00 0.00 2.29
5056 6160 7.977293 TCTTATGCGCTTGTTTTCTACTATACA 59.023 33.333 9.73 0.00 0.00 2.29
5057 6161 8.267367 GTCTTATGCGCTTGTTTTCTACTATAC 58.733 37.037 9.73 0.00 0.00 1.47
5058 6162 7.977293 TGTCTTATGCGCTTGTTTTCTACTATA 59.023 33.333 9.73 0.00 0.00 1.31
5059 6163 6.816640 TGTCTTATGCGCTTGTTTTCTACTAT 59.183 34.615 9.73 0.00 0.00 2.12
5060 6164 6.090358 GTGTCTTATGCGCTTGTTTTCTACTA 59.910 38.462 9.73 0.00 0.00 1.82
5061 6165 4.994852 TGTCTTATGCGCTTGTTTTCTACT 59.005 37.500 9.73 0.00 0.00 2.57
5062 6166 5.080068 GTGTCTTATGCGCTTGTTTTCTAC 58.920 41.667 9.73 0.00 0.00 2.59
5063 6167 4.752604 TGTGTCTTATGCGCTTGTTTTCTA 59.247 37.500 9.73 0.00 0.00 2.10
5064 6168 3.563808 TGTGTCTTATGCGCTTGTTTTCT 59.436 39.130 9.73 0.00 0.00 2.52
5065 6169 3.664025 GTGTGTCTTATGCGCTTGTTTTC 59.336 43.478 9.73 0.00 0.00 2.29
5066 6170 3.066064 TGTGTGTCTTATGCGCTTGTTTT 59.934 39.130 9.73 0.00 0.00 2.43
5067 6171 2.616376 TGTGTGTCTTATGCGCTTGTTT 59.384 40.909 9.73 0.00 0.00 2.83
5068 6172 2.217750 TGTGTGTCTTATGCGCTTGTT 58.782 42.857 9.73 0.00 0.00 2.83
5069 6173 1.877637 TGTGTGTCTTATGCGCTTGT 58.122 45.000 9.73 0.00 0.00 3.16
5070 6174 4.034394 ACATATGTGTGTCTTATGCGCTTG 59.966 41.667 7.78 0.00 37.55 4.01
5071 6175 4.191544 ACATATGTGTGTCTTATGCGCTT 58.808 39.130 7.78 4.59 37.55 4.68
5072 6176 3.797039 ACATATGTGTGTCTTATGCGCT 58.203 40.909 7.78 0.00 37.55 5.92
5073 6177 4.745125 AGTACATATGTGTGTCTTATGCGC 59.255 41.667 18.81 0.00 39.39 6.09
5074 6178 5.402568 GGAGTACATATGTGTGTCTTATGCG 59.597 44.000 18.81 0.00 39.39 4.73
5075 6179 5.696724 GGGAGTACATATGTGTGTCTTATGC 59.303 44.000 18.81 1.00 39.39 3.14
5076 6180 7.055667 AGGGAGTACATATGTGTGTCTTATG 57.944 40.000 18.81 0.00 39.39 1.90
5077 6181 6.267928 GGAGGGAGTACATATGTGTGTCTTAT 59.732 42.308 18.81 0.00 39.39 1.73
5078 6182 5.597182 GGAGGGAGTACATATGTGTGTCTTA 59.403 44.000 18.81 0.00 39.39 2.10
5079 6183 4.406003 GGAGGGAGTACATATGTGTGTCTT 59.594 45.833 18.81 2.45 39.39 3.01
5080 6184 3.961408 GGAGGGAGTACATATGTGTGTCT 59.039 47.826 18.81 10.73 39.39 3.41
5081 6185 3.243434 CGGAGGGAGTACATATGTGTGTC 60.243 52.174 18.81 11.21 39.39 3.67
5082 6186 2.693591 CGGAGGGAGTACATATGTGTGT 59.306 50.000 18.81 2.40 39.39 3.72
5083 6187 2.545952 GCGGAGGGAGTACATATGTGTG 60.546 54.545 18.81 0.00 39.39 3.82
5084 6188 1.687123 GCGGAGGGAGTACATATGTGT 59.313 52.381 18.81 5.43 42.39 3.72
5085 6189 1.686587 TGCGGAGGGAGTACATATGTG 59.313 52.381 18.81 0.00 0.00 3.21
5086 6190 2.082140 TGCGGAGGGAGTACATATGT 57.918 50.000 13.93 13.93 0.00 2.29
5087 6191 3.069586 TCTTTGCGGAGGGAGTACATATG 59.930 47.826 0.00 0.00 0.00 1.78
5088 6192 3.305720 TCTTTGCGGAGGGAGTACATAT 58.694 45.455 0.00 0.00 0.00 1.78
5089 6193 2.742348 TCTTTGCGGAGGGAGTACATA 58.258 47.619 0.00 0.00 0.00 2.29
5090 6194 1.568504 TCTTTGCGGAGGGAGTACAT 58.431 50.000 0.00 0.00 0.00 2.29
5091 6195 1.344065 TTCTTTGCGGAGGGAGTACA 58.656 50.000 0.00 0.00 0.00 2.90
5092 6196 2.467566 TTTCTTTGCGGAGGGAGTAC 57.532 50.000 0.00 0.00 0.00 2.73
5093 6197 6.325545 TCTTATATTTCTTTGCGGAGGGAGTA 59.674 38.462 0.00 0.00 0.00 2.59
5094 6198 3.933861 ATATTTCTTTGCGGAGGGAGT 57.066 42.857 0.00 0.00 0.00 3.85
5095 6199 5.611374 TCTTATATTTCTTTGCGGAGGGAG 58.389 41.667 0.00 0.00 0.00 4.30
5096 6200 5.611374 CTCTTATATTTCTTTGCGGAGGGA 58.389 41.667 0.00 0.00 0.00 4.20
5097 6201 4.214332 GCTCTTATATTTCTTTGCGGAGGG 59.786 45.833 0.00 0.00 0.00 4.30
5098 6202 4.084328 CGCTCTTATATTTCTTTGCGGAGG 60.084 45.833 0.00 0.00 38.74 4.30
5099 6203 4.508124 ACGCTCTTATATTTCTTTGCGGAG 59.492 41.667 0.00 0.00 45.26 4.63
5100 6204 4.439057 ACGCTCTTATATTTCTTTGCGGA 58.561 39.130 0.00 0.00 45.26 5.54
5101 6205 4.795970 ACGCTCTTATATTTCTTTGCGG 57.204 40.909 0.00 0.00 45.26 5.69
5102 6206 8.595781 TTTAAACGCTCTTATATTTCTTTGCG 57.404 30.769 0.00 0.00 46.21 4.85
5118 6222 9.042008 CCAATATACTGTAGTGATTTAAACGCT 57.958 33.333 0.00 0.00 0.00 5.07
5119 6223 9.037737 TCCAATATACTGTAGTGATTTAAACGC 57.962 33.333 0.00 0.00 0.00 4.84
5126 6230 9.784531 CATTCCTTCCAATATACTGTAGTGATT 57.215 33.333 0.00 0.00 0.00 2.57
5127 6231 7.880195 GCATTCCTTCCAATATACTGTAGTGAT 59.120 37.037 0.00 0.00 0.00 3.06
5128 6232 7.147567 TGCATTCCTTCCAATATACTGTAGTGA 60.148 37.037 0.00 0.00 0.00 3.41
5129 6233 6.992123 TGCATTCCTTCCAATATACTGTAGTG 59.008 38.462 0.00 0.00 0.00 2.74
5130 6234 7.071196 TCTGCATTCCTTCCAATATACTGTAGT 59.929 37.037 0.00 0.00 0.00 2.73
5131 6235 7.386299 GTCTGCATTCCTTCCAATATACTGTAG 59.614 40.741 0.00 0.00 0.00 2.74
5132 6236 7.217200 GTCTGCATTCCTTCCAATATACTGTA 58.783 38.462 0.00 0.00 0.00 2.74
5133 6237 6.058183 GTCTGCATTCCTTCCAATATACTGT 58.942 40.000 0.00 0.00 0.00 3.55
5134 6238 5.471456 GGTCTGCATTCCTTCCAATATACTG 59.529 44.000 0.00 0.00 0.00 2.74
5135 6239 5.625150 GGTCTGCATTCCTTCCAATATACT 58.375 41.667 0.00 0.00 0.00 2.12
5136 6240 4.452455 CGGTCTGCATTCCTTCCAATATAC 59.548 45.833 0.00 0.00 0.00 1.47
5144 6248 2.386661 TTCTCGGTCTGCATTCCTTC 57.613 50.000 0.00 0.00 0.00 3.46
5157 6261 7.316640 ACGATTCTTCTCCATATATTTCTCGG 58.683 38.462 0.00 0.00 0.00 4.63
5221 6629 4.952460 AGATGCAGCATTTTGTTTGAAGT 58.048 34.783 9.90 0.00 0.00 3.01
5238 6646 6.734104 AGAACAGTAACAATCTCAAGATGC 57.266 37.500 0.00 0.00 34.49 3.91
5282 6696 6.528072 GGATTGAGTGAAATTTTAAGGAAGCG 59.472 38.462 0.00 0.00 0.00 4.68
5294 6709 5.126067 CGATAAGGGTGGATTGAGTGAAAT 58.874 41.667 0.00 0.00 0.00 2.17
5311 6726 5.293569 AGGAAGTTTCAATAACGGCGATAAG 59.706 40.000 16.62 3.61 0.00 1.73
5348 6764 3.339742 AGGGTTCCCAGGGATACATTTTT 59.660 43.478 9.80 0.00 39.74 1.94
5349 6765 2.933139 AGGGTTCCCAGGGATACATTTT 59.067 45.455 9.80 0.00 39.74 1.82
5350 6766 2.584773 AGGGTTCCCAGGGATACATTT 58.415 47.619 9.80 0.00 39.74 2.32
5351 6767 2.303660 AGGGTTCCCAGGGATACATT 57.696 50.000 9.80 0.40 39.74 2.71
5352 6768 2.303660 AAGGGTTCCCAGGGATACAT 57.696 50.000 9.80 0.00 39.74 2.29
5353 6769 2.225934 TGTAAGGGTTCCCAGGGATACA 60.226 50.000 9.80 11.87 39.74 2.29
5354 6770 2.484602 TGTAAGGGTTCCCAGGGATAC 58.515 52.381 9.80 9.15 0.00 2.24
5355 6771 2.974285 TGTAAGGGTTCCCAGGGATA 57.026 50.000 9.80 0.00 0.00 2.59
5356 6772 2.068831 TTGTAAGGGTTCCCAGGGAT 57.931 50.000 9.80 0.00 0.00 3.85
5357 6773 1.835895 TTTGTAAGGGTTCCCAGGGA 58.164 50.000 3.01 3.01 0.00 4.20
5358 6774 2.687003 TTTTGTAAGGGTTCCCAGGG 57.313 50.000 10.73 0.00 0.00 4.45
5359 6775 6.212589 ACAATTATTTTGTAAGGGTTCCCAGG 59.787 38.462 10.73 0.00 0.00 4.45
5360 6776 7.096551 CACAATTATTTTGTAAGGGTTCCCAG 58.903 38.462 10.73 0.00 0.00 4.45
5361 6777 6.555360 ACACAATTATTTTGTAAGGGTTCCCA 59.445 34.615 10.73 0.00 0.00 4.37
5378 6794 5.616270 TGAACTGCTTCAGGTACACAATTA 58.384 37.500 0.00 0.00 35.51 1.40
5382 6798 3.466836 CTTGAACTGCTTCAGGTACACA 58.533 45.455 0.00 0.00 37.70 3.72
5387 6803 2.355010 AAGCTTGAACTGCTTCAGGT 57.645 45.000 0.00 0.00 46.39 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.