Multiple sequence alignment - TraesCS7A01G267100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G267100 chr7A 100.000 2511 0 0 1 2511 270044681 270042171 0.000000e+00 4638.0
1 TraesCS7A01G267100 chr7D 95.299 2106 54 11 432 2511 251373430 251375516 0.000000e+00 3299.0
2 TraesCS7A01G267100 chr7D 86.408 103 12 2 2186 2287 77075035 77074934 7.340000e-21 111.0
3 TraesCS7A01G267100 chr7B 94.006 2102 73 19 431 2511 228362159 228364228 0.000000e+00 3134.0
4 TraesCS7A01G267100 chr7B 90.588 170 15 1 1 170 14703443 14703275 9.040000e-55 224.0
5 TraesCS7A01G267100 chr5B 91.813 171 13 1 1 171 706484745 706484914 1.160000e-58 237.0
6 TraesCS7A01G267100 chr5B 91.176 170 14 1 1 170 421159390 421159222 1.940000e-56 230.0
7 TraesCS7A01G267100 chr5B 80.741 270 52 0 1476 1745 480293998 480294267 7.040000e-51 211.0
8 TraesCS7A01G267100 chr5B 81.116 233 34 9 1872 2098 480294278 480294506 7.140000e-41 178.0
9 TraesCS7A01G267100 chr5B 94.048 84 5 0 2186 2269 480294520 480294603 7.290000e-26 128.0
10 TraesCS7A01G267100 chr2A 91.765 170 13 1 1 169 9315271 9315440 4.180000e-58 235.0
11 TraesCS7A01G267100 chr2A 89.286 84 9 0 2186 2269 66913405 66913488 3.420000e-19 106.0
12 TraesCS7A01G267100 chr1B 91.176 170 13 2 1 169 540147594 540147762 1.940000e-56 230.0
13 TraesCS7A01G267100 chr1B 90.643 171 14 2 1 170 8961406 8961237 2.510000e-55 226.0
14 TraesCS7A01G267100 chr3B 90.588 170 16 0 1 170 27479564 27479395 2.510000e-55 226.0
15 TraesCS7A01G267100 chr3B 82.609 207 27 6 1870 2076 603602128 603601931 9.230000e-40 174.0
16 TraesCS7A01G267100 chr3B 88.095 84 10 0 2186 2269 464613294 464613377 1.590000e-17 100.0
17 TraesCS7A01G267100 chr4D 90.588 170 14 2 1 169 400895435 400895267 9.040000e-55 224.0
18 TraesCS7A01G267100 chr4D 80.169 237 41 4 1385 1618 12410988 12410755 3.320000e-39 172.0
19 TraesCS7A01G267100 chr4B 90.588 170 14 2 1 169 512736551 512736383 9.040000e-55 224.0
20 TraesCS7A01G267100 chr4B 78.189 243 47 4 1379 1618 22273906 22274145 1.560000e-32 150.0
21 TraesCS7A01G267100 chr5A 81.481 270 50 0 1476 1745 505612465 505612734 3.250000e-54 222.0
22 TraesCS7A01G267100 chr5A 81.781 247 35 9 1858 2098 505612731 505612973 5.480000e-47 198.0
23 TraesCS7A01G267100 chr5A 94.048 84 5 0 2186 2269 505612987 505613070 7.290000e-26 128.0
24 TraesCS7A01G267100 chr5D 80.741 270 52 0 1476 1745 400280744 400281013 7.040000e-51 211.0
25 TraesCS7A01G267100 chr5D 81.116 233 34 7 1872 2098 400281024 400281252 7.140000e-41 178.0
26 TraesCS7A01G267100 chr5D 97.561 41 1 0 2471 2511 378050741 378050781 1.250000e-08 71.3
27 TraesCS7A01G267100 chr3D 83.092 207 26 6 1870 2076 457019243 457019046 1.980000e-41 180.0
28 TraesCS7A01G267100 chr3D 86.408 103 12 2 2186 2287 554063661 554063560 7.340000e-21 111.0
29 TraesCS7A01G267100 chr3D 100.000 41 0 0 2471 2511 608535713 608535753 2.680000e-10 76.8
30 TraesCS7A01G267100 chr3A 82.126 207 28 6 1870 2076 599861530 599861333 4.300000e-38 169.0
31 TraesCS7A01G267100 chr1D 80.365 219 34 6 1858 2076 388650705 388650914 9.300000e-35 158.0
32 TraesCS7A01G267100 chr4A 77.308 260 53 5 1362 1618 590278304 590278560 5.600000e-32 148.0
33 TraesCS7A01G267100 chr2D 100.000 41 0 0 2471 2511 570985715 570985675 2.680000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G267100 chr7A 270042171 270044681 2510 True 4638 4638 100.000 1 2511 1 chr7A.!!$R1 2510
1 TraesCS7A01G267100 chr7D 251373430 251375516 2086 False 3299 3299 95.299 432 2511 1 chr7D.!!$F1 2079
2 TraesCS7A01G267100 chr7B 228362159 228364228 2069 False 3134 3134 94.006 431 2511 1 chr7B.!!$F1 2080

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 0.036875 GGCCCTGTCCTATATGGCAC 59.963 60.0 0.0 0.0 43.96 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1757 1770 0.595095 ACGAAGGCGACGAACTAAGT 59.405 50.0 12.47 0.0 41.64 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.411781 GCGATAGATACCATGTTAGAAGGG 58.588 45.833 0.00 0.00 39.76 3.95
24 25 5.185249 GCGATAGATACCATGTTAGAAGGGA 59.815 44.000 0.00 0.00 39.76 4.20
25 26 6.295123 GCGATAGATACCATGTTAGAAGGGAA 60.295 42.308 0.00 0.00 39.76 3.97
26 27 7.667557 CGATAGATACCATGTTAGAAGGGAAA 58.332 38.462 0.00 0.00 39.76 3.13
27 28 7.815068 CGATAGATACCATGTTAGAAGGGAAAG 59.185 40.741 0.00 0.00 39.76 2.62
28 29 8.798975 ATAGATACCATGTTAGAAGGGAAAGA 57.201 34.615 0.00 0.00 0.00 2.52
29 30 7.130681 AGATACCATGTTAGAAGGGAAAGAG 57.869 40.000 0.00 0.00 0.00 2.85
30 31 4.576330 ACCATGTTAGAAGGGAAAGAGG 57.424 45.455 0.00 0.00 0.00 3.69
31 32 3.267031 ACCATGTTAGAAGGGAAAGAGGG 59.733 47.826 0.00 0.00 0.00 4.30
32 33 3.523564 CCATGTTAGAAGGGAAAGAGGGA 59.476 47.826 0.00 0.00 0.00 4.20
33 34 4.166919 CCATGTTAGAAGGGAAAGAGGGAT 59.833 45.833 0.00 0.00 0.00 3.85
34 35 5.340360 CCATGTTAGAAGGGAAAGAGGGATT 60.340 44.000 0.00 0.00 0.00 3.01
35 36 5.860648 TGTTAGAAGGGAAAGAGGGATTT 57.139 39.130 0.00 0.00 0.00 2.17
36 37 5.570320 TGTTAGAAGGGAAAGAGGGATTTG 58.430 41.667 0.00 0.00 0.00 2.32
37 38 5.312178 TGTTAGAAGGGAAAGAGGGATTTGA 59.688 40.000 0.00 0.00 0.00 2.69
38 39 6.011628 TGTTAGAAGGGAAAGAGGGATTTGAT 60.012 38.462 0.00 0.00 0.00 2.57
39 40 4.864726 AGAAGGGAAAGAGGGATTTGATG 58.135 43.478 0.00 0.00 0.00 3.07
40 41 4.541714 AGAAGGGAAAGAGGGATTTGATGA 59.458 41.667 0.00 0.00 0.00 2.92
41 42 4.953781 AGGGAAAGAGGGATTTGATGAA 57.046 40.909 0.00 0.00 0.00 2.57
42 43 5.275263 AGGGAAAGAGGGATTTGATGAAA 57.725 39.130 0.00 0.00 0.00 2.69
43 44 5.846868 AGGGAAAGAGGGATTTGATGAAAT 58.153 37.500 0.00 0.00 34.29 2.17
44 45 6.266857 AGGGAAAGAGGGATTTGATGAAATT 58.733 36.000 0.00 0.00 31.58 1.82
45 46 6.155737 AGGGAAAGAGGGATTTGATGAAATTG 59.844 38.462 0.00 0.00 31.58 2.32
46 47 6.070596 GGGAAAGAGGGATTTGATGAAATTGT 60.071 38.462 0.00 0.00 31.58 2.71
47 48 7.389232 GGAAAGAGGGATTTGATGAAATTGTT 58.611 34.615 0.00 0.00 31.58 2.83
48 49 7.332678 GGAAAGAGGGATTTGATGAAATTGTTG 59.667 37.037 0.00 0.00 31.58 3.33
49 50 7.543359 AAGAGGGATTTGATGAAATTGTTGA 57.457 32.000 0.00 0.00 31.58 3.18
50 51 7.729124 AGAGGGATTTGATGAAATTGTTGAT 57.271 32.000 0.00 0.00 31.58 2.57
51 52 7.553334 AGAGGGATTTGATGAAATTGTTGATG 58.447 34.615 0.00 0.00 31.58 3.07
52 53 7.179694 AGAGGGATTTGATGAAATTGTTGATGT 59.820 33.333 0.00 0.00 31.58 3.06
53 54 8.365060 AGGGATTTGATGAAATTGTTGATGTA 57.635 30.769 0.00 0.00 31.58 2.29
54 55 8.984855 AGGGATTTGATGAAATTGTTGATGTAT 58.015 29.630 0.00 0.00 31.58 2.29
55 56 9.603921 GGGATTTGATGAAATTGTTGATGTATT 57.396 29.630 0.00 0.00 31.58 1.89
57 58 9.910511 GATTTGATGAAATTGTTGATGTATTGC 57.089 29.630 0.00 0.00 31.58 3.56
58 59 9.661563 ATTTGATGAAATTGTTGATGTATTGCT 57.338 25.926 0.00 0.00 0.00 3.91
59 60 9.491675 TTTGATGAAATTGTTGATGTATTGCTT 57.508 25.926 0.00 0.00 0.00 3.91
60 61 8.468720 TGATGAAATTGTTGATGTATTGCTTG 57.531 30.769 0.00 0.00 0.00 4.01
61 62 8.305317 TGATGAAATTGTTGATGTATTGCTTGA 58.695 29.630 0.00 0.00 0.00 3.02
62 63 8.697846 ATGAAATTGTTGATGTATTGCTTGAG 57.302 30.769 0.00 0.00 0.00 3.02
63 64 6.587226 TGAAATTGTTGATGTATTGCTTGAGC 59.413 34.615 0.00 0.00 42.50 4.26
64 65 4.439305 TTGTTGATGTATTGCTTGAGCC 57.561 40.909 0.00 0.00 41.18 4.70
65 66 3.689347 TGTTGATGTATTGCTTGAGCCT 58.311 40.909 0.00 0.00 41.18 4.58
66 67 3.691118 TGTTGATGTATTGCTTGAGCCTC 59.309 43.478 0.00 0.00 41.18 4.70
67 68 2.554142 TGATGTATTGCTTGAGCCTCG 58.446 47.619 0.00 0.00 41.18 4.63
68 69 2.093500 TGATGTATTGCTTGAGCCTCGT 60.093 45.455 0.00 0.00 41.18 4.18
69 70 1.725641 TGTATTGCTTGAGCCTCGTG 58.274 50.000 0.00 0.00 41.18 4.35
70 71 1.009829 GTATTGCTTGAGCCTCGTGG 58.990 55.000 0.00 0.00 41.18 4.94
71 72 0.107703 TATTGCTTGAGCCTCGTGGG 60.108 55.000 5.54 0.00 41.18 4.61
86 87 6.716934 CCTCGTGGGCATATATATAGAAGT 57.283 41.667 0.00 0.00 0.00 3.01
87 88 7.818997 CCTCGTGGGCATATATATAGAAGTA 57.181 40.000 0.00 0.00 0.00 2.24
88 89 8.234136 CCTCGTGGGCATATATATAGAAGTAA 57.766 38.462 0.00 0.00 0.00 2.24
89 90 8.692710 CCTCGTGGGCATATATATAGAAGTAAA 58.307 37.037 0.00 0.00 0.00 2.01
123 124 9.298250 ACTTAGAGTACAAGATAAGTCAGAACA 57.702 33.333 0.00 0.00 34.22 3.18
127 128 9.646427 AGAGTACAAGATAAGTCAGAACAAATC 57.354 33.333 0.00 0.00 0.00 2.17
128 129 8.779354 AGTACAAGATAAGTCAGAACAAATCC 57.221 34.615 0.00 0.00 0.00 3.01
129 130 8.598041 AGTACAAGATAAGTCAGAACAAATCCT 58.402 33.333 0.00 0.00 0.00 3.24
130 131 9.871238 GTACAAGATAAGTCAGAACAAATCCTA 57.129 33.333 0.00 0.00 0.00 2.94
132 133 9.965902 ACAAGATAAGTCAGAACAAATCCTAAT 57.034 29.630 0.00 0.00 0.00 1.73
140 141 9.829507 AGTCAGAACAAATCCTAATCTATCTTG 57.170 33.333 0.00 0.00 0.00 3.02
141 142 9.606631 GTCAGAACAAATCCTAATCTATCTTGT 57.393 33.333 0.00 0.00 0.00 3.16
142 143 9.823647 TCAGAACAAATCCTAATCTATCTTGTC 57.176 33.333 0.00 0.00 0.00 3.18
143 144 9.829507 CAGAACAAATCCTAATCTATCTTGTCT 57.170 33.333 0.00 0.00 0.00 3.41
147 148 9.620259 ACAAATCCTAATCTATCTTGTCTTTCC 57.380 33.333 0.00 0.00 0.00 3.13
148 149 9.844257 CAAATCCTAATCTATCTTGTCTTTCCT 57.156 33.333 0.00 0.00 0.00 3.36
176 177 9.730420 ATAAACATTATATTCAACAAGGCGAAC 57.270 29.630 0.00 0.00 0.00 3.95
177 178 7.391148 AACATTATATTCAACAAGGCGAACT 57.609 32.000 0.00 0.00 0.00 3.01
178 179 8.500753 AACATTATATTCAACAAGGCGAACTA 57.499 30.769 0.00 0.00 0.00 2.24
179 180 8.500753 ACATTATATTCAACAAGGCGAACTAA 57.499 30.769 0.00 0.00 0.00 2.24
180 181 8.395633 ACATTATATTCAACAAGGCGAACTAAC 58.604 33.333 0.00 0.00 0.00 2.34
181 182 8.612619 CATTATATTCAACAAGGCGAACTAACT 58.387 33.333 0.00 0.00 0.00 2.24
182 183 9.826574 ATTATATTCAACAAGGCGAACTAACTA 57.173 29.630 0.00 0.00 0.00 2.24
183 184 5.857822 ATTCAACAAGGCGAACTAACTAC 57.142 39.130 0.00 0.00 0.00 2.73
184 185 4.325028 TCAACAAGGCGAACTAACTACA 57.675 40.909 0.00 0.00 0.00 2.74
185 186 4.053295 TCAACAAGGCGAACTAACTACAC 58.947 43.478 0.00 0.00 0.00 2.90
186 187 3.738830 ACAAGGCGAACTAACTACACA 57.261 42.857 0.00 0.00 0.00 3.72
187 188 3.387397 ACAAGGCGAACTAACTACACAC 58.613 45.455 0.00 0.00 0.00 3.82
188 189 2.735134 CAAGGCGAACTAACTACACACC 59.265 50.000 0.00 0.00 0.00 4.16
189 190 1.965643 AGGCGAACTAACTACACACCA 59.034 47.619 0.00 0.00 0.00 4.17
190 191 2.565834 AGGCGAACTAACTACACACCAT 59.434 45.455 0.00 0.00 0.00 3.55
191 192 2.928116 GGCGAACTAACTACACACCATC 59.072 50.000 0.00 0.00 0.00 3.51
192 193 2.597305 GCGAACTAACTACACACCATCG 59.403 50.000 0.00 0.00 0.00 3.84
193 194 3.176708 CGAACTAACTACACACCATCGG 58.823 50.000 0.00 0.00 0.00 4.18
194 195 2.667473 ACTAACTACACACCATCGGC 57.333 50.000 0.00 0.00 0.00 5.54
195 196 1.206371 ACTAACTACACACCATCGGCC 59.794 52.381 0.00 0.00 0.00 6.13
196 197 0.538118 TAACTACACACCATCGGCCC 59.462 55.000 0.00 0.00 0.00 5.80
197 198 1.198759 AACTACACACCATCGGCCCT 61.199 55.000 0.00 0.00 0.00 5.19
198 199 1.153369 CTACACACCATCGGCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
199 200 1.899437 CTACACACCATCGGCCCTGT 61.899 60.000 0.00 0.00 0.00 4.00
200 201 1.895020 TACACACCATCGGCCCTGTC 61.895 60.000 0.00 0.00 0.00 3.51
201 202 3.717294 ACACCATCGGCCCTGTCC 61.717 66.667 0.00 0.00 0.00 4.02
202 203 3.402681 CACCATCGGCCCTGTCCT 61.403 66.667 0.00 0.00 0.00 3.85
203 204 2.063979 CACCATCGGCCCTGTCCTA 61.064 63.158 0.00 0.00 0.00 2.94
204 205 1.074471 ACCATCGGCCCTGTCCTAT 60.074 57.895 0.00 0.00 0.00 2.57
205 206 0.190069 ACCATCGGCCCTGTCCTATA 59.810 55.000 0.00 0.00 0.00 1.31
206 207 1.203313 ACCATCGGCCCTGTCCTATAT 60.203 52.381 0.00 0.00 0.00 0.86
207 208 1.208052 CCATCGGCCCTGTCCTATATG 59.792 57.143 0.00 0.00 0.00 1.78
208 209 1.208052 CATCGGCCCTGTCCTATATGG 59.792 57.143 0.00 0.00 37.10 2.74
209 210 1.192146 TCGGCCCTGTCCTATATGGC 61.192 60.000 0.00 0.00 41.42 4.40
210 211 1.480212 CGGCCCTGTCCTATATGGCA 61.480 60.000 0.00 0.00 43.96 4.92
211 212 0.036875 GGCCCTGTCCTATATGGCAC 59.963 60.000 0.00 0.00 43.96 5.01
228 229 3.555547 TGGCACATGAAATCTAATCGACG 59.444 43.478 0.00 0.00 0.00 5.12
229 230 3.059597 GGCACATGAAATCTAATCGACGG 60.060 47.826 0.00 0.00 0.00 4.79
230 231 3.604772 GCACATGAAATCTAATCGACGGC 60.605 47.826 0.00 0.00 0.00 5.68
231 232 2.794910 ACATGAAATCTAATCGACGGCG 59.205 45.455 2.87 2.87 39.35 6.46
240 241 2.124612 TCGACGGCGATCCAGGTA 60.125 61.111 10.67 0.00 42.51 3.08
241 242 1.527611 TCGACGGCGATCCAGGTAT 60.528 57.895 10.67 0.00 42.51 2.73
242 243 1.371758 CGACGGCGATCCAGGTATG 60.372 63.158 16.62 0.00 40.82 2.39
243 244 1.740285 GACGGCGATCCAGGTATGT 59.260 57.895 16.62 0.00 0.00 2.29
244 245 0.597637 GACGGCGATCCAGGTATGTG 60.598 60.000 16.62 0.00 0.00 3.21
245 246 1.040893 ACGGCGATCCAGGTATGTGA 61.041 55.000 16.62 0.00 0.00 3.58
246 247 0.104120 CGGCGATCCAGGTATGTGAA 59.896 55.000 0.00 0.00 0.00 3.18
247 248 1.583054 GGCGATCCAGGTATGTGAAC 58.417 55.000 0.00 0.00 0.00 3.18
248 249 1.134521 GGCGATCCAGGTATGTGAACA 60.135 52.381 0.00 0.00 0.00 3.18
249 250 2.627945 GCGATCCAGGTATGTGAACAA 58.372 47.619 0.00 0.00 0.00 2.83
250 251 3.006940 GCGATCCAGGTATGTGAACAAA 58.993 45.455 0.00 0.00 0.00 2.83
251 252 3.181510 GCGATCCAGGTATGTGAACAAAC 60.182 47.826 0.00 0.00 0.00 2.93
252 253 3.062099 CGATCCAGGTATGTGAACAAACG 59.938 47.826 0.00 0.00 0.00 3.60
253 254 3.755112 TCCAGGTATGTGAACAAACGA 57.245 42.857 0.00 0.00 0.00 3.85
254 255 3.659786 TCCAGGTATGTGAACAAACGAG 58.340 45.455 0.00 0.00 0.00 4.18
255 256 3.070446 TCCAGGTATGTGAACAAACGAGT 59.930 43.478 0.00 0.00 0.00 4.18
256 257 3.813166 CCAGGTATGTGAACAAACGAGTT 59.187 43.478 0.00 0.00 0.00 3.01
257 258 4.992319 CCAGGTATGTGAACAAACGAGTTA 59.008 41.667 0.00 0.00 0.00 2.24
258 259 5.120208 CCAGGTATGTGAACAAACGAGTTAG 59.880 44.000 0.00 0.00 0.00 2.34
259 260 5.924254 CAGGTATGTGAACAAACGAGTTAGA 59.076 40.000 0.00 0.00 0.00 2.10
260 261 6.089551 CAGGTATGTGAACAAACGAGTTAGAG 59.910 42.308 0.00 0.00 0.00 2.43
261 262 6.015688 AGGTATGTGAACAAACGAGTTAGAGA 60.016 38.462 0.00 0.00 0.00 3.10
262 263 6.643770 GGTATGTGAACAAACGAGTTAGAGAA 59.356 38.462 0.00 0.00 0.00 2.87
263 264 6.771188 ATGTGAACAAACGAGTTAGAGAAG 57.229 37.500 0.00 0.00 0.00 2.85
264 265 5.657474 TGTGAACAAACGAGTTAGAGAAGT 58.343 37.500 0.00 0.00 0.00 3.01
265 266 6.103997 TGTGAACAAACGAGTTAGAGAAGTT 58.896 36.000 0.00 0.00 0.00 2.66
266 267 6.035650 TGTGAACAAACGAGTTAGAGAAGTTG 59.964 38.462 0.00 0.00 0.00 3.16
267 268 5.522460 TGAACAAACGAGTTAGAGAAGTTGG 59.478 40.000 0.00 0.00 0.00 3.77
268 269 3.808174 ACAAACGAGTTAGAGAAGTTGGC 59.192 43.478 0.00 0.00 0.00 4.52
269 270 3.746045 AACGAGTTAGAGAAGTTGGCA 57.254 42.857 0.00 0.00 0.00 4.92
270 271 3.027974 ACGAGTTAGAGAAGTTGGCAC 57.972 47.619 0.00 0.00 0.00 5.01
271 272 2.364324 ACGAGTTAGAGAAGTTGGCACA 59.636 45.455 0.00 0.00 0.00 4.57
272 273 3.006967 ACGAGTTAGAGAAGTTGGCACAT 59.993 43.478 0.00 0.00 39.30 3.21
273 274 3.369147 CGAGTTAGAGAAGTTGGCACATG 59.631 47.826 0.00 0.00 39.30 3.21
274 275 4.569943 GAGTTAGAGAAGTTGGCACATGA 58.430 43.478 0.00 0.00 39.30 3.07
275 276 4.973168 AGTTAGAGAAGTTGGCACATGAA 58.027 39.130 0.00 0.00 39.30 2.57
276 277 5.376625 AGTTAGAGAAGTTGGCACATGAAA 58.623 37.500 0.00 0.00 39.30 2.69
277 278 6.006449 AGTTAGAGAAGTTGGCACATGAAAT 58.994 36.000 0.00 0.00 39.30 2.17
278 279 6.150140 AGTTAGAGAAGTTGGCACATGAAATC 59.850 38.462 0.00 0.00 39.30 2.17
279 280 4.660168 AGAGAAGTTGGCACATGAAATCT 58.340 39.130 0.00 0.00 39.30 2.40
280 281 4.458295 AGAGAAGTTGGCACATGAAATCTG 59.542 41.667 0.00 0.00 39.30 2.90
281 282 3.057033 AGAAGTTGGCACATGAAATCTGC 60.057 43.478 0.00 0.00 39.30 4.26
285 286 0.743097 GGCACATGAAATCTGCCTCC 59.257 55.000 15.19 0.00 46.05 4.30
286 287 1.684248 GGCACATGAAATCTGCCTCCT 60.684 52.381 15.19 0.00 46.05 3.69
287 288 2.421952 GGCACATGAAATCTGCCTCCTA 60.422 50.000 15.19 0.00 46.05 2.94
288 289 2.877168 GCACATGAAATCTGCCTCCTAG 59.123 50.000 0.00 0.00 0.00 3.02
289 290 3.683847 GCACATGAAATCTGCCTCCTAGT 60.684 47.826 0.00 0.00 0.00 2.57
290 291 3.875727 CACATGAAATCTGCCTCCTAGTG 59.124 47.826 0.00 0.00 0.00 2.74
291 292 3.521126 ACATGAAATCTGCCTCCTAGTGT 59.479 43.478 0.00 0.00 0.00 3.55
292 293 3.895232 TGAAATCTGCCTCCTAGTGTC 57.105 47.619 0.00 0.00 0.00 3.67
293 294 3.173151 TGAAATCTGCCTCCTAGTGTCA 58.827 45.455 0.00 0.00 0.00 3.58
294 295 3.582647 TGAAATCTGCCTCCTAGTGTCAA 59.417 43.478 0.00 0.00 0.00 3.18
295 296 3.902881 AATCTGCCTCCTAGTGTCAAG 57.097 47.619 0.00 0.00 0.00 3.02
296 297 2.604912 TCTGCCTCCTAGTGTCAAGA 57.395 50.000 0.00 0.00 0.00 3.02
297 298 3.107402 TCTGCCTCCTAGTGTCAAGAT 57.893 47.619 0.00 0.00 0.00 2.40
298 299 3.445008 TCTGCCTCCTAGTGTCAAGATT 58.555 45.455 0.00 0.00 0.00 2.40
299 300 3.449018 TCTGCCTCCTAGTGTCAAGATTC 59.551 47.826 0.00 0.00 0.00 2.52
300 301 3.173151 TGCCTCCTAGTGTCAAGATTCA 58.827 45.455 0.00 0.00 0.00 2.57
301 302 3.776969 TGCCTCCTAGTGTCAAGATTCAT 59.223 43.478 0.00 0.00 0.00 2.57
302 303 4.125703 GCCTCCTAGTGTCAAGATTCATG 58.874 47.826 0.00 0.00 0.00 3.07
303 304 4.125703 CCTCCTAGTGTCAAGATTCATGC 58.874 47.826 0.00 0.00 0.00 4.06
304 305 4.383444 CCTCCTAGTGTCAAGATTCATGCA 60.383 45.833 0.00 0.00 0.00 3.96
305 306 5.164620 TCCTAGTGTCAAGATTCATGCAA 57.835 39.130 0.00 0.00 0.00 4.08
306 307 5.559770 TCCTAGTGTCAAGATTCATGCAAA 58.440 37.500 0.00 0.00 0.00 3.68
307 308 6.003326 TCCTAGTGTCAAGATTCATGCAAAA 58.997 36.000 0.00 0.00 0.00 2.44
308 309 6.660521 TCCTAGTGTCAAGATTCATGCAAAAT 59.339 34.615 0.00 0.00 0.00 1.82
309 310 7.177216 TCCTAGTGTCAAGATTCATGCAAAATT 59.823 33.333 0.00 0.00 0.00 1.82
310 311 7.274904 CCTAGTGTCAAGATTCATGCAAAATTG 59.725 37.037 0.00 0.00 0.00 2.32
311 312 6.751157 AGTGTCAAGATTCATGCAAAATTGA 58.249 32.000 0.00 0.00 0.00 2.57
312 313 7.211573 AGTGTCAAGATTCATGCAAAATTGAA 58.788 30.769 3.10 3.10 36.38 2.69
313 314 7.876068 AGTGTCAAGATTCATGCAAAATTGAAT 59.124 29.630 12.01 12.01 43.42 2.57
319 320 5.842619 TTCATGCAAAATTGAATCAACGG 57.157 34.783 0.00 0.00 0.00 4.44
320 321 4.880759 TCATGCAAAATTGAATCAACGGT 58.119 34.783 0.00 0.00 0.00 4.83
321 322 4.685165 TCATGCAAAATTGAATCAACGGTG 59.315 37.500 0.00 0.00 0.00 4.94
322 323 4.313277 TGCAAAATTGAATCAACGGTGA 57.687 36.364 5.17 5.17 38.41 4.02
323 324 4.880759 TGCAAAATTGAATCAACGGTGAT 58.119 34.783 10.98 10.98 46.91 3.06
324 325 4.922692 TGCAAAATTGAATCAACGGTGATC 59.077 37.500 17.95 10.86 44.02 2.92
325 326 4.327087 GCAAAATTGAATCAACGGTGATCC 59.673 41.667 17.95 4.00 44.02 3.36
326 327 5.468592 CAAAATTGAATCAACGGTGATCCA 58.531 37.500 17.95 7.54 44.02 3.41
327 328 4.970662 AATTGAATCAACGGTGATCCAG 57.029 40.909 17.95 0.00 44.02 3.86
328 329 2.401583 TGAATCAACGGTGATCCAGG 57.598 50.000 17.95 0.00 44.02 4.45
329 330 1.628340 TGAATCAACGGTGATCCAGGT 59.372 47.619 17.95 0.00 44.02 4.00
330 331 2.835156 TGAATCAACGGTGATCCAGGTA 59.165 45.455 17.95 0.00 44.02 3.08
331 332 3.454447 TGAATCAACGGTGATCCAGGTAT 59.546 43.478 17.95 0.00 44.02 2.73
332 333 2.979814 TCAACGGTGATCCAGGTATG 57.020 50.000 0.00 0.00 0.00 2.39
333 334 2.184533 TCAACGGTGATCCAGGTATGT 58.815 47.619 0.00 0.00 0.00 2.29
334 335 2.093711 TCAACGGTGATCCAGGTATGTG 60.094 50.000 0.00 0.00 0.00 3.21
335 336 1.860641 ACGGTGATCCAGGTATGTGA 58.139 50.000 0.00 0.00 0.00 3.58
336 337 2.184533 ACGGTGATCCAGGTATGTGAA 58.815 47.619 0.00 0.00 0.00 3.18
337 338 2.093658 ACGGTGATCCAGGTATGTGAAC 60.094 50.000 0.00 0.00 0.00 3.18
338 339 2.093711 CGGTGATCCAGGTATGTGAACA 60.094 50.000 0.00 0.00 0.00 3.18
339 340 3.618752 CGGTGATCCAGGTATGTGAACAA 60.619 47.826 0.00 0.00 0.00 2.83
340 341 4.331968 GGTGATCCAGGTATGTGAACAAA 58.668 43.478 0.00 0.00 0.00 2.83
341 342 4.156008 GGTGATCCAGGTATGTGAACAAAC 59.844 45.833 0.00 0.00 0.00 2.93
342 343 4.000325 TGATCCAGGTATGTGAACAAACG 59.000 43.478 0.00 0.00 0.00 3.60
343 344 3.755112 TCCAGGTATGTGAACAAACGA 57.245 42.857 0.00 0.00 0.00 3.85
344 345 3.659786 TCCAGGTATGTGAACAAACGAG 58.340 45.455 0.00 0.00 0.00 4.18
345 346 3.070446 TCCAGGTATGTGAACAAACGAGT 59.930 43.478 0.00 0.00 0.00 4.18
346 347 3.813166 CCAGGTATGTGAACAAACGAGTT 59.187 43.478 0.00 0.00 0.00 3.01
347 348 4.992319 CCAGGTATGTGAACAAACGAGTTA 59.008 41.667 0.00 0.00 0.00 2.24
348 349 5.467399 CCAGGTATGTGAACAAACGAGTTAA 59.533 40.000 0.00 0.00 0.00 2.01
349 350 6.017770 CCAGGTATGTGAACAAACGAGTTAAA 60.018 38.462 0.00 0.00 0.00 1.52
350 351 7.069569 CAGGTATGTGAACAAACGAGTTAAAG 58.930 38.462 0.00 0.00 0.00 1.85
351 352 6.987992 AGGTATGTGAACAAACGAGTTAAAGA 59.012 34.615 0.00 0.00 0.00 2.52
352 353 7.496591 AGGTATGTGAACAAACGAGTTAAAGAA 59.503 33.333 0.00 0.00 0.00 2.52
353 354 7.797123 GGTATGTGAACAAACGAGTTAAAGAAG 59.203 37.037 0.00 0.00 0.00 2.85
354 355 6.730960 TGTGAACAAACGAGTTAAAGAAGT 57.269 33.333 0.00 0.00 0.00 3.01
355 356 6.539324 TGTGAACAAACGAGTTAAAGAAGTG 58.461 36.000 0.00 0.00 0.00 3.16
356 357 5.451342 GTGAACAAACGAGTTAAAGAAGTGC 59.549 40.000 0.00 0.00 0.00 4.40
357 358 4.547406 ACAAACGAGTTAAAGAAGTGCC 57.453 40.909 0.00 0.00 0.00 5.01
358 359 3.942748 ACAAACGAGTTAAAGAAGTGCCA 59.057 39.130 0.00 0.00 0.00 4.92
359 360 4.201881 ACAAACGAGTTAAAGAAGTGCCAC 60.202 41.667 0.00 0.00 0.00 5.01
360 361 3.188159 ACGAGTTAAAGAAGTGCCACA 57.812 42.857 0.00 0.00 0.00 4.17
361 362 2.870411 ACGAGTTAAAGAAGTGCCACAC 59.130 45.455 0.00 0.00 34.10 3.82
362 363 2.869801 CGAGTTAAAGAAGTGCCACACA 59.130 45.455 0.00 0.00 36.74 3.72
363 364 3.498397 CGAGTTAAAGAAGTGCCACACAT 59.502 43.478 0.00 0.00 36.74 3.21
364 365 4.611355 CGAGTTAAAGAAGTGCCACACATG 60.611 45.833 0.00 0.00 36.74 3.21
365 366 4.207165 AGTTAAAGAAGTGCCACACATGT 58.793 39.130 0.00 0.00 36.74 3.21
366 367 4.036734 AGTTAAAGAAGTGCCACACATGTG 59.963 41.667 24.25 24.25 45.23 3.21
374 375 3.889227 CACACATGTGGGCGGTAG 58.111 61.111 28.64 2.30 42.10 3.18
375 376 1.003839 CACACATGTGGGCGGTAGT 60.004 57.895 28.64 3.06 42.10 2.73
376 377 1.003839 ACACATGTGGGCGGTAGTG 60.004 57.895 28.64 0.85 34.19 2.74
377 378 1.003839 CACATGTGGGCGGTAGTGT 60.004 57.895 18.51 0.00 0.00 3.55
378 379 0.605319 CACATGTGGGCGGTAGTGTT 60.605 55.000 18.51 0.00 0.00 3.32
379 380 0.109723 ACATGTGGGCGGTAGTGTTT 59.890 50.000 0.00 0.00 0.00 2.83
380 381 0.802494 CATGTGGGCGGTAGTGTTTC 59.198 55.000 0.00 0.00 0.00 2.78
381 382 0.322187 ATGTGGGCGGTAGTGTTTCC 60.322 55.000 0.00 0.00 0.00 3.13
382 383 1.071814 GTGGGCGGTAGTGTTTCCA 59.928 57.895 0.00 0.00 0.00 3.53
383 384 0.535553 GTGGGCGGTAGTGTTTCCAA 60.536 55.000 0.00 0.00 0.00 3.53
384 385 0.183014 TGGGCGGTAGTGTTTCCAAA 59.817 50.000 0.00 0.00 0.00 3.28
385 386 1.320507 GGGCGGTAGTGTTTCCAAAA 58.679 50.000 0.00 0.00 0.00 2.44
386 387 1.682323 GGGCGGTAGTGTTTCCAAAAA 59.318 47.619 0.00 0.00 0.00 1.94
406 407 3.963383 AAGAAAACACTGCACTTACGG 57.037 42.857 0.00 0.00 0.00 4.02
407 408 3.188159 AGAAAACACTGCACTTACGGA 57.812 42.857 0.00 0.00 0.00 4.69
408 409 3.740115 AGAAAACACTGCACTTACGGAT 58.260 40.909 0.00 0.00 0.00 4.18
409 410 3.498397 AGAAAACACTGCACTTACGGATG 59.502 43.478 0.00 0.00 0.00 3.51
410 411 2.831685 AACACTGCACTTACGGATGA 57.168 45.000 0.00 0.00 0.00 2.92
411 412 2.080286 ACACTGCACTTACGGATGAC 57.920 50.000 0.00 0.00 0.00 3.06
423 424 0.647410 CGGATGACGTGTGATGAAGC 59.353 55.000 0.00 0.00 37.93 3.86
424 425 1.725641 GGATGACGTGTGATGAAGCA 58.274 50.000 0.00 0.00 0.00 3.91
425 426 1.662629 GGATGACGTGTGATGAAGCAG 59.337 52.381 0.00 0.00 0.00 4.24
426 427 1.061711 GATGACGTGTGATGAAGCAGC 59.938 52.381 0.00 0.00 0.00 5.25
427 428 0.249826 TGACGTGTGATGAAGCAGCA 60.250 50.000 0.00 0.00 0.00 4.41
428 429 1.081892 GACGTGTGATGAAGCAGCAT 58.918 50.000 0.00 0.00 30.83 3.79
429 430 1.466167 GACGTGTGATGAAGCAGCATT 59.534 47.619 0.00 0.00 30.83 3.56
570 571 4.790140 GCACAAAAAGAATCACATCTAGCG 59.210 41.667 0.00 0.00 0.00 4.26
573 574 5.122396 ACAAAAAGAATCACATCTAGCGGTC 59.878 40.000 0.00 0.00 0.00 4.79
581 582 2.092211 CACATCTAGCGGTCGAACAAAC 59.908 50.000 0.00 0.00 0.00 2.93
593 594 4.260456 GGTCGAACAAACTGAATTCACGAA 60.260 41.667 14.27 0.60 0.00 3.85
594 595 5.440685 GTCGAACAAACTGAATTCACGAAT 58.559 37.500 14.27 0.00 0.00 3.34
595 596 5.560378 GTCGAACAAACTGAATTCACGAATC 59.440 40.000 14.27 3.10 0.00 2.52
596 597 5.235401 TCGAACAAACTGAATTCACGAATCA 59.765 36.000 3.38 0.00 0.00 2.57
597 598 5.336990 CGAACAAACTGAATTCACGAATCAC 59.663 40.000 3.38 0.00 0.00 3.06
599 600 4.509970 ACAAACTGAATTCACGAATCACGA 59.490 37.500 3.38 0.00 45.77 4.35
786 787 3.628646 GATGGCCTGCTCGTTGGGT 62.629 63.158 3.32 0.00 0.00 4.51
1062 1063 3.554960 CGTTCTTGTCCTTGTCCATGAGA 60.555 47.826 0.00 0.00 0.00 3.27
1248 1249 0.961019 GGTGCTCTGCCAATCACAAA 59.039 50.000 0.00 0.00 0.00 2.83
1257 1264 1.799994 GCCAATCACAAACACAATGCC 59.200 47.619 0.00 0.00 0.00 4.40
1282 1289 3.119743 CGTTAGTTCTACGTCCATCCACA 60.120 47.826 0.00 0.00 34.47 4.17
1295 1302 1.665679 CATCCACACCACGTGCTAATC 59.334 52.381 10.91 0.00 44.91 1.75
1312 1325 4.878397 GCTAATCAGTAGAAGTGCAATGGT 59.122 41.667 0.00 0.00 30.50 3.55
1315 1328 8.357036 CTAATCAGTAGAAGTGCAATGGTGCG 62.357 46.154 0.00 0.00 42.22 5.34
1371 1384 4.222847 GTCGGGGTCGAGCATCCC 62.223 72.222 17.59 8.71 46.91 3.85
1555 1568 1.079127 CACCTCCTGCCCGTAGTTG 60.079 63.158 0.00 0.00 0.00 3.16
1750 1763 2.202946 TGGCACAACTGCGTTCGA 60.203 55.556 0.00 0.00 45.31 3.71
1751 1764 1.815840 TGGCACAACTGCGTTCGAA 60.816 52.632 0.00 0.00 45.31 3.71
1752 1765 1.163420 TGGCACAACTGCGTTCGAAT 61.163 50.000 0.00 0.00 45.31 3.34
1753 1766 0.725784 GGCACAACTGCGTTCGAATG 60.726 55.000 13.16 13.16 45.31 2.67
1754 1767 0.725784 GCACAACTGCGTTCGAATGG 60.726 55.000 18.64 7.12 32.44 3.16
1755 1768 0.865111 CACAACTGCGTTCGAATGGA 59.135 50.000 18.64 15.07 0.00 3.41
1757 1770 1.944024 ACAACTGCGTTCGAATGGAAA 59.056 42.857 18.64 0.00 36.14 3.13
1886 1907 0.249120 TTGACGATGGTGCGGAAGAT 59.751 50.000 0.00 0.00 35.12 2.40
1893 1914 1.377202 GGTGCGGAAGATCTTGGCA 60.377 57.895 21.01 21.01 0.00 4.92
1899 1920 1.451028 GAAGATCTTGGCAGCGGCT 60.451 57.895 14.00 0.00 40.87 5.52
2066 2087 2.203252 CATGATGGCCACCTCCCG 60.203 66.667 8.16 0.00 0.00 5.14
2396 2420 1.289066 CGTGGTCGCTCTTCTTGGA 59.711 57.895 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.185249 TCCCTTCTAACATGGTATCTATCGC 59.815 44.000 0.00 0.00 0.00 4.58
1 2 6.835819 TCCCTTCTAACATGGTATCTATCG 57.164 41.667 0.00 0.00 0.00 2.92
2 3 8.871125 TCTTTCCCTTCTAACATGGTATCTATC 58.129 37.037 0.00 0.00 0.00 2.08
3 4 8.798975 TCTTTCCCTTCTAACATGGTATCTAT 57.201 34.615 0.00 0.00 0.00 1.98
4 5 7.290248 CCTCTTTCCCTTCTAACATGGTATCTA 59.710 40.741 0.00 0.00 0.00 1.98
5 6 6.100424 CCTCTTTCCCTTCTAACATGGTATCT 59.900 42.308 0.00 0.00 0.00 1.98
6 7 6.292150 CCTCTTTCCCTTCTAACATGGTATC 58.708 44.000 0.00 0.00 0.00 2.24
7 8 5.132816 CCCTCTTTCCCTTCTAACATGGTAT 59.867 44.000 0.00 0.00 0.00 2.73
8 9 4.473559 CCCTCTTTCCCTTCTAACATGGTA 59.526 45.833 0.00 0.00 0.00 3.25
9 10 3.267031 CCCTCTTTCCCTTCTAACATGGT 59.733 47.826 0.00 0.00 0.00 3.55
10 11 3.523564 TCCCTCTTTCCCTTCTAACATGG 59.476 47.826 0.00 0.00 0.00 3.66
11 12 4.844349 TCCCTCTTTCCCTTCTAACATG 57.156 45.455 0.00 0.00 0.00 3.21
12 13 6.011628 TCAAATCCCTCTTTCCCTTCTAACAT 60.012 38.462 0.00 0.00 0.00 2.71
13 14 5.312178 TCAAATCCCTCTTTCCCTTCTAACA 59.688 40.000 0.00 0.00 0.00 2.41
14 15 5.816682 TCAAATCCCTCTTTCCCTTCTAAC 58.183 41.667 0.00 0.00 0.00 2.34
15 16 6.217487 TCATCAAATCCCTCTTTCCCTTCTAA 59.783 38.462 0.00 0.00 0.00 2.10
16 17 5.731187 TCATCAAATCCCTCTTTCCCTTCTA 59.269 40.000 0.00 0.00 0.00 2.10
17 18 4.541714 TCATCAAATCCCTCTTTCCCTTCT 59.458 41.667 0.00 0.00 0.00 2.85
18 19 4.860022 TCATCAAATCCCTCTTTCCCTTC 58.140 43.478 0.00 0.00 0.00 3.46
19 20 4.953781 TCATCAAATCCCTCTTTCCCTT 57.046 40.909 0.00 0.00 0.00 3.95
20 21 4.953781 TTCATCAAATCCCTCTTTCCCT 57.046 40.909 0.00 0.00 0.00 4.20
21 22 6.070596 ACAATTTCATCAAATCCCTCTTTCCC 60.071 38.462 0.00 0.00 30.37 3.97
22 23 6.939622 ACAATTTCATCAAATCCCTCTTTCC 58.060 36.000 0.00 0.00 30.37 3.13
23 24 8.090214 TCAACAATTTCATCAAATCCCTCTTTC 58.910 33.333 0.00 0.00 30.37 2.62
24 25 7.965718 TCAACAATTTCATCAAATCCCTCTTT 58.034 30.769 0.00 0.00 30.37 2.52
25 26 7.543359 TCAACAATTTCATCAAATCCCTCTT 57.457 32.000 0.00 0.00 30.37 2.85
26 27 7.179694 ACATCAACAATTTCATCAAATCCCTCT 59.820 33.333 0.00 0.00 30.37 3.69
27 28 7.325694 ACATCAACAATTTCATCAAATCCCTC 58.674 34.615 0.00 0.00 30.37 4.30
28 29 7.248743 ACATCAACAATTTCATCAAATCCCT 57.751 32.000 0.00 0.00 30.37 4.20
29 30 9.603921 AATACATCAACAATTTCATCAAATCCC 57.396 29.630 0.00 0.00 30.37 3.85
31 32 9.910511 GCAATACATCAACAATTTCATCAAATC 57.089 29.630 0.00 0.00 30.37 2.17
32 33 9.661563 AGCAATACATCAACAATTTCATCAAAT 57.338 25.926 0.00 0.00 33.27 2.32
33 34 9.491675 AAGCAATACATCAACAATTTCATCAAA 57.508 25.926 0.00 0.00 0.00 2.69
34 35 8.927721 CAAGCAATACATCAACAATTTCATCAA 58.072 29.630 0.00 0.00 0.00 2.57
35 36 8.305317 TCAAGCAATACATCAACAATTTCATCA 58.695 29.630 0.00 0.00 0.00 3.07
36 37 8.692110 TCAAGCAATACATCAACAATTTCATC 57.308 30.769 0.00 0.00 0.00 2.92
37 38 7.277098 GCTCAAGCAATACATCAACAATTTCAT 59.723 33.333 0.00 0.00 41.59 2.57
38 39 6.587226 GCTCAAGCAATACATCAACAATTTCA 59.413 34.615 0.00 0.00 41.59 2.69
39 40 6.035327 GGCTCAAGCAATACATCAACAATTTC 59.965 38.462 4.13 0.00 44.36 2.17
40 41 5.870978 GGCTCAAGCAATACATCAACAATTT 59.129 36.000 4.13 0.00 44.36 1.82
41 42 5.186409 AGGCTCAAGCAATACATCAACAATT 59.814 36.000 4.13 0.00 44.36 2.32
42 43 4.708421 AGGCTCAAGCAATACATCAACAAT 59.292 37.500 4.13 0.00 44.36 2.71
43 44 4.081406 AGGCTCAAGCAATACATCAACAA 58.919 39.130 4.13 0.00 44.36 2.83
44 45 3.689347 AGGCTCAAGCAATACATCAACA 58.311 40.909 4.13 0.00 44.36 3.33
45 46 3.242543 CGAGGCTCAAGCAATACATCAAC 60.243 47.826 15.95 0.00 44.36 3.18
46 47 2.938451 CGAGGCTCAAGCAATACATCAA 59.062 45.455 15.95 0.00 44.36 2.57
47 48 2.093500 ACGAGGCTCAAGCAATACATCA 60.093 45.455 15.95 0.00 44.36 3.07
48 49 2.286294 CACGAGGCTCAAGCAATACATC 59.714 50.000 15.95 0.00 44.36 3.06
49 50 2.283298 CACGAGGCTCAAGCAATACAT 58.717 47.619 15.95 0.00 44.36 2.29
50 51 1.675714 CCACGAGGCTCAAGCAATACA 60.676 52.381 15.95 0.00 44.36 2.29
51 52 1.009829 CCACGAGGCTCAAGCAATAC 58.990 55.000 15.95 0.00 44.36 1.89
52 53 0.107703 CCCACGAGGCTCAAGCAATA 60.108 55.000 15.95 0.00 44.36 1.90
53 54 1.377725 CCCACGAGGCTCAAGCAAT 60.378 57.895 15.95 0.00 44.36 3.56
54 55 2.032528 CCCACGAGGCTCAAGCAA 59.967 61.111 15.95 0.00 44.36 3.91
63 64 6.716934 ACTTCTATATATATGCCCACGAGG 57.283 41.667 5.44 0.00 39.47 4.63
97 98 9.298250 TGTTCTGACTTATCTTGTACTCTAAGT 57.702 33.333 0.00 2.51 37.18 2.24
101 102 9.646427 GATTTGTTCTGACTTATCTTGTACTCT 57.354 33.333 0.00 0.00 0.00 3.24
102 103 8.874816 GGATTTGTTCTGACTTATCTTGTACTC 58.125 37.037 0.00 0.00 0.00 2.59
103 104 8.598041 AGGATTTGTTCTGACTTATCTTGTACT 58.402 33.333 0.00 0.00 0.00 2.73
104 105 8.779354 AGGATTTGTTCTGACTTATCTTGTAC 57.221 34.615 0.00 0.00 0.00 2.90
106 107 9.965902 ATTAGGATTTGTTCTGACTTATCTTGT 57.034 29.630 0.00 0.00 0.00 3.16
114 115 9.829507 CAAGATAGATTAGGATTTGTTCTGACT 57.170 33.333 0.00 0.00 0.00 3.41
115 116 9.606631 ACAAGATAGATTAGGATTTGTTCTGAC 57.393 33.333 0.00 0.00 0.00 3.51
116 117 9.823647 GACAAGATAGATTAGGATTTGTTCTGA 57.176 33.333 0.00 0.00 0.00 3.27
117 118 9.829507 AGACAAGATAGATTAGGATTTGTTCTG 57.170 33.333 0.00 0.00 0.00 3.02
121 122 9.620259 GGAAAGACAAGATAGATTAGGATTTGT 57.380 33.333 0.00 0.00 0.00 2.83
122 123 9.844257 AGGAAAGACAAGATAGATTAGGATTTG 57.156 33.333 0.00 0.00 0.00 2.32
150 151 9.730420 GTTCGCCTTGTTGAATATAATGTTTAT 57.270 29.630 0.00 0.00 0.00 1.40
151 152 8.952278 AGTTCGCCTTGTTGAATATAATGTTTA 58.048 29.630 0.00 0.00 0.00 2.01
152 153 7.826690 AGTTCGCCTTGTTGAATATAATGTTT 58.173 30.769 0.00 0.00 0.00 2.83
153 154 7.391148 AGTTCGCCTTGTTGAATATAATGTT 57.609 32.000 0.00 0.00 0.00 2.71
154 155 8.395633 GTTAGTTCGCCTTGTTGAATATAATGT 58.604 33.333 0.00 0.00 0.00 2.71
155 156 8.612619 AGTTAGTTCGCCTTGTTGAATATAATG 58.387 33.333 0.00 0.00 0.00 1.90
156 157 8.732746 AGTTAGTTCGCCTTGTTGAATATAAT 57.267 30.769 0.00 0.00 0.00 1.28
157 158 9.090692 GTAGTTAGTTCGCCTTGTTGAATATAA 57.909 33.333 0.00 0.00 0.00 0.98
158 159 8.252417 TGTAGTTAGTTCGCCTTGTTGAATATA 58.748 33.333 0.00 0.00 0.00 0.86
159 160 7.064253 GTGTAGTTAGTTCGCCTTGTTGAATAT 59.936 37.037 0.00 0.00 0.00 1.28
160 161 6.366877 GTGTAGTTAGTTCGCCTTGTTGAATA 59.633 38.462 0.00 0.00 0.00 1.75
161 162 5.178809 GTGTAGTTAGTTCGCCTTGTTGAAT 59.821 40.000 0.00 0.00 0.00 2.57
162 163 4.508861 GTGTAGTTAGTTCGCCTTGTTGAA 59.491 41.667 0.00 0.00 0.00 2.69
163 164 4.053295 GTGTAGTTAGTTCGCCTTGTTGA 58.947 43.478 0.00 0.00 0.00 3.18
164 165 3.805422 TGTGTAGTTAGTTCGCCTTGTTG 59.195 43.478 0.00 0.00 0.00 3.33
165 166 3.805971 GTGTGTAGTTAGTTCGCCTTGTT 59.194 43.478 0.00 0.00 0.00 2.83
166 167 3.387397 GTGTGTAGTTAGTTCGCCTTGT 58.613 45.455 0.00 0.00 0.00 3.16
167 168 2.735134 GGTGTGTAGTTAGTTCGCCTTG 59.265 50.000 0.00 0.00 0.00 3.61
168 169 2.366266 TGGTGTGTAGTTAGTTCGCCTT 59.634 45.455 0.00 0.00 0.00 4.35
169 170 1.965643 TGGTGTGTAGTTAGTTCGCCT 59.034 47.619 0.00 0.00 0.00 5.52
170 171 2.443887 TGGTGTGTAGTTAGTTCGCC 57.556 50.000 0.00 0.00 0.00 5.54
171 172 2.597305 CGATGGTGTGTAGTTAGTTCGC 59.403 50.000 0.00 0.00 0.00 4.70
172 173 3.176708 CCGATGGTGTGTAGTTAGTTCG 58.823 50.000 0.00 0.00 0.00 3.95
173 174 2.928116 GCCGATGGTGTGTAGTTAGTTC 59.072 50.000 0.00 0.00 0.00 3.01
174 175 2.354403 GGCCGATGGTGTGTAGTTAGTT 60.354 50.000 0.00 0.00 0.00 2.24
175 176 1.206371 GGCCGATGGTGTGTAGTTAGT 59.794 52.381 0.00 0.00 0.00 2.24
176 177 1.472728 GGGCCGATGGTGTGTAGTTAG 60.473 57.143 0.00 0.00 0.00 2.34
177 178 0.538118 GGGCCGATGGTGTGTAGTTA 59.462 55.000 0.00 0.00 0.00 2.24
178 179 1.198759 AGGGCCGATGGTGTGTAGTT 61.199 55.000 0.00 0.00 0.00 2.24
179 180 1.612442 AGGGCCGATGGTGTGTAGT 60.612 57.895 0.00 0.00 0.00 2.73
180 181 1.153369 CAGGGCCGATGGTGTGTAG 60.153 63.158 0.00 0.00 0.00 2.74
181 182 1.895020 GACAGGGCCGATGGTGTGTA 61.895 60.000 10.98 0.00 0.00 2.90
182 183 3.249189 ACAGGGCCGATGGTGTGT 61.249 61.111 10.98 0.00 0.00 3.72
183 184 2.436646 GACAGGGCCGATGGTGTG 60.437 66.667 10.98 0.00 0.00 3.82
184 185 2.815684 TAGGACAGGGCCGATGGTGT 62.816 60.000 10.98 0.00 0.00 4.16
185 186 1.410850 ATAGGACAGGGCCGATGGTG 61.411 60.000 10.98 0.00 0.00 4.17
186 187 0.190069 TATAGGACAGGGCCGATGGT 59.810 55.000 10.98 0.00 0.00 3.55
187 188 1.208052 CATATAGGACAGGGCCGATGG 59.792 57.143 10.98 0.00 0.00 3.51
188 189 1.208052 CCATATAGGACAGGGCCGATG 59.792 57.143 0.00 0.00 41.22 3.84
189 190 1.573108 CCATATAGGACAGGGCCGAT 58.427 55.000 0.00 0.00 41.22 4.18
190 191 1.192146 GCCATATAGGACAGGGCCGA 61.192 60.000 0.00 0.00 41.22 5.54
191 192 1.296715 GCCATATAGGACAGGGCCG 59.703 63.158 0.00 0.00 41.22 6.13
192 193 0.036875 GTGCCATATAGGACAGGGCC 59.963 60.000 0.00 0.00 43.96 5.80
193 194 0.764890 TGTGCCATATAGGACAGGGC 59.235 55.000 0.00 0.00 44.82 5.19
194 195 2.639347 TCATGTGCCATATAGGACAGGG 59.361 50.000 7.50 0.34 41.22 4.45
195 196 4.356405 TTCATGTGCCATATAGGACAGG 57.644 45.455 1.28 1.28 41.22 4.00
196 197 6.236409 AGATTTCATGTGCCATATAGGACAG 58.764 40.000 1.69 0.00 41.22 3.51
197 198 6.191657 AGATTTCATGTGCCATATAGGACA 57.808 37.500 0.00 0.00 41.22 4.02
198 199 8.798859 ATTAGATTTCATGTGCCATATAGGAC 57.201 34.615 0.00 0.00 41.22 3.85
199 200 7.765819 CGATTAGATTTCATGTGCCATATAGGA 59.234 37.037 0.00 0.00 41.22 2.94
200 201 7.765819 TCGATTAGATTTCATGTGCCATATAGG 59.234 37.037 0.00 0.00 41.84 2.57
201 202 8.598924 GTCGATTAGATTTCATGTGCCATATAG 58.401 37.037 0.00 0.00 0.00 1.31
202 203 7.275560 CGTCGATTAGATTTCATGTGCCATATA 59.724 37.037 0.00 0.00 0.00 0.86
203 204 6.091305 CGTCGATTAGATTTCATGTGCCATAT 59.909 38.462 0.00 0.00 0.00 1.78
204 205 5.405269 CGTCGATTAGATTTCATGTGCCATA 59.595 40.000 0.00 0.00 0.00 2.74
205 206 4.212004 CGTCGATTAGATTTCATGTGCCAT 59.788 41.667 0.00 0.00 0.00 4.40
206 207 3.555547 CGTCGATTAGATTTCATGTGCCA 59.444 43.478 0.00 0.00 0.00 4.92
207 208 3.059597 CCGTCGATTAGATTTCATGTGCC 60.060 47.826 0.00 0.00 0.00 5.01
208 209 3.604772 GCCGTCGATTAGATTTCATGTGC 60.605 47.826 0.00 0.00 0.00 4.57
209 210 3.362014 CGCCGTCGATTAGATTTCATGTG 60.362 47.826 0.00 0.00 38.10 3.21
210 211 2.794910 CGCCGTCGATTAGATTTCATGT 59.205 45.455 0.00 0.00 38.10 3.21
211 212 3.049912 TCGCCGTCGATTAGATTTCATG 58.950 45.455 0.00 0.00 40.21 3.07
212 213 3.364889 TCGCCGTCGATTAGATTTCAT 57.635 42.857 0.00 0.00 40.21 2.57
213 214 2.855660 TCGCCGTCGATTAGATTTCA 57.144 45.000 0.00 0.00 40.21 2.69
224 225 1.371758 CATACCTGGATCGCCGTCG 60.372 63.158 0.00 0.00 36.79 5.12
225 226 0.597637 CACATACCTGGATCGCCGTC 60.598 60.000 0.00 0.00 36.79 4.79
226 227 1.040893 TCACATACCTGGATCGCCGT 61.041 55.000 0.00 0.00 36.79 5.68
227 228 0.104120 TTCACATACCTGGATCGCCG 59.896 55.000 0.00 0.00 36.79 6.46
228 229 1.134521 TGTTCACATACCTGGATCGCC 60.135 52.381 0.00 0.00 0.00 5.54
229 230 2.309528 TGTTCACATACCTGGATCGC 57.690 50.000 0.00 0.00 0.00 4.58
230 231 3.062099 CGTTTGTTCACATACCTGGATCG 59.938 47.826 0.00 0.00 0.00 3.69
231 232 4.250464 TCGTTTGTTCACATACCTGGATC 58.750 43.478 0.00 0.00 0.00 3.36
232 233 4.253685 CTCGTTTGTTCACATACCTGGAT 58.746 43.478 0.00 0.00 0.00 3.41
233 234 3.070446 ACTCGTTTGTTCACATACCTGGA 59.930 43.478 0.00 0.00 0.00 3.86
234 235 3.399330 ACTCGTTTGTTCACATACCTGG 58.601 45.455 0.00 0.00 0.00 4.45
235 236 5.924254 TCTAACTCGTTTGTTCACATACCTG 59.076 40.000 0.00 0.00 0.00 4.00
236 237 6.015688 TCTCTAACTCGTTTGTTCACATACCT 60.016 38.462 0.00 0.00 0.00 3.08
237 238 6.154445 TCTCTAACTCGTTTGTTCACATACC 58.846 40.000 0.00 0.00 0.00 2.73
238 239 7.381678 ACTTCTCTAACTCGTTTGTTCACATAC 59.618 37.037 0.00 0.00 0.00 2.39
239 240 7.431249 ACTTCTCTAACTCGTTTGTTCACATA 58.569 34.615 0.00 0.00 0.00 2.29
240 241 6.281405 ACTTCTCTAACTCGTTTGTTCACAT 58.719 36.000 0.00 0.00 0.00 3.21
241 242 5.657474 ACTTCTCTAACTCGTTTGTTCACA 58.343 37.500 0.00 0.00 0.00 3.58
242 243 6.411652 CAACTTCTCTAACTCGTTTGTTCAC 58.588 40.000 0.00 0.00 0.00 3.18
243 244 5.522460 CCAACTTCTCTAACTCGTTTGTTCA 59.478 40.000 0.00 0.00 0.00 3.18
244 245 5.558463 GCCAACTTCTCTAACTCGTTTGTTC 60.558 44.000 0.00 0.00 0.00 3.18
245 246 4.272748 GCCAACTTCTCTAACTCGTTTGTT 59.727 41.667 0.00 0.00 0.00 2.83
246 247 3.808174 GCCAACTTCTCTAACTCGTTTGT 59.192 43.478 0.00 0.00 0.00 2.83
247 248 3.807622 TGCCAACTTCTCTAACTCGTTTG 59.192 43.478 0.00 0.00 0.00 2.93
248 249 3.808174 GTGCCAACTTCTCTAACTCGTTT 59.192 43.478 0.00 0.00 0.00 3.60
249 250 3.181469 TGTGCCAACTTCTCTAACTCGTT 60.181 43.478 0.00 0.00 0.00 3.85
250 251 2.364324 TGTGCCAACTTCTCTAACTCGT 59.636 45.455 0.00 0.00 0.00 4.18
251 252 3.026630 TGTGCCAACTTCTCTAACTCG 57.973 47.619 0.00 0.00 0.00 4.18
252 253 4.569943 TCATGTGCCAACTTCTCTAACTC 58.430 43.478 0.00 0.00 0.00 3.01
253 254 4.623932 TCATGTGCCAACTTCTCTAACT 57.376 40.909 0.00 0.00 0.00 2.24
254 255 5.689383 TTTCATGTGCCAACTTCTCTAAC 57.311 39.130 0.00 0.00 0.00 2.34
255 256 6.149973 CAGATTTCATGTGCCAACTTCTCTAA 59.850 38.462 0.00 0.00 0.00 2.10
256 257 5.645067 CAGATTTCATGTGCCAACTTCTCTA 59.355 40.000 0.00 0.00 0.00 2.43
257 258 4.458295 CAGATTTCATGTGCCAACTTCTCT 59.542 41.667 0.00 0.00 0.00 3.10
258 259 4.730657 CAGATTTCATGTGCCAACTTCTC 58.269 43.478 0.00 0.00 0.00 2.87
259 260 3.057033 GCAGATTTCATGTGCCAACTTCT 60.057 43.478 0.00 0.00 43.11 2.85
260 261 3.248266 GCAGATTTCATGTGCCAACTTC 58.752 45.455 0.00 0.00 43.11 3.01
261 262 3.308438 GCAGATTTCATGTGCCAACTT 57.692 42.857 0.00 0.00 43.11 2.66
268 269 3.875727 CACTAGGAGGCAGATTTCATGTG 59.124 47.826 0.00 0.00 0.00 3.21
269 270 3.521126 ACACTAGGAGGCAGATTTCATGT 59.479 43.478 0.00 0.00 0.00 3.21
270 271 4.125703 GACACTAGGAGGCAGATTTCATG 58.874 47.826 0.00 0.00 0.00 3.07
271 272 3.776969 TGACACTAGGAGGCAGATTTCAT 59.223 43.478 0.00 0.00 0.00 2.57
272 273 3.173151 TGACACTAGGAGGCAGATTTCA 58.827 45.455 0.00 0.00 0.00 2.69
273 274 3.895232 TGACACTAGGAGGCAGATTTC 57.105 47.619 0.00 0.00 0.00 2.17
274 275 3.840666 TCTTGACACTAGGAGGCAGATTT 59.159 43.478 0.00 0.00 0.00 2.17
275 276 3.445008 TCTTGACACTAGGAGGCAGATT 58.555 45.455 0.00 0.00 0.00 2.40
276 277 3.107402 TCTTGACACTAGGAGGCAGAT 57.893 47.619 0.00 0.00 0.00 2.90
277 278 2.604912 TCTTGACACTAGGAGGCAGA 57.395 50.000 0.00 0.00 0.00 4.26
278 279 3.196469 TGAATCTTGACACTAGGAGGCAG 59.804 47.826 0.00 0.00 0.00 4.85
279 280 3.173151 TGAATCTTGACACTAGGAGGCA 58.827 45.455 0.00 0.00 0.00 4.75
280 281 3.895232 TGAATCTTGACACTAGGAGGC 57.105 47.619 0.00 0.00 0.00 4.70
281 282 4.125703 GCATGAATCTTGACACTAGGAGG 58.874 47.826 0.00 0.00 0.00 4.30
282 283 4.763073 TGCATGAATCTTGACACTAGGAG 58.237 43.478 0.00 0.00 0.00 3.69
283 284 4.824479 TGCATGAATCTTGACACTAGGA 57.176 40.909 0.00 0.00 0.00 2.94
284 285 5.885230 TTTGCATGAATCTTGACACTAGG 57.115 39.130 0.00 0.00 0.00 3.02
285 286 8.024865 TCAATTTTGCATGAATCTTGACACTAG 58.975 33.333 0.00 0.00 0.00 2.57
286 287 7.884257 TCAATTTTGCATGAATCTTGACACTA 58.116 30.769 0.00 0.00 0.00 2.74
287 288 6.751157 TCAATTTTGCATGAATCTTGACACT 58.249 32.000 0.00 0.00 0.00 3.55
288 289 7.410800 TTCAATTTTGCATGAATCTTGACAC 57.589 32.000 0.00 0.00 30.94 3.67
296 297 5.933463 ACCGTTGATTCAATTTTGCATGAAT 59.067 32.000 12.01 12.01 46.15 2.57
297 298 5.177142 CACCGTTGATTCAATTTTGCATGAA 59.823 36.000 1.78 3.10 39.66 2.57
298 299 4.685165 CACCGTTGATTCAATTTTGCATGA 59.315 37.500 1.78 0.00 0.00 3.07
299 300 4.685165 TCACCGTTGATTCAATTTTGCATG 59.315 37.500 1.78 0.00 0.00 4.06
300 301 4.880759 TCACCGTTGATTCAATTTTGCAT 58.119 34.783 1.78 0.00 0.00 3.96
301 302 4.313277 TCACCGTTGATTCAATTTTGCA 57.687 36.364 1.78 0.00 0.00 4.08
302 303 4.327087 GGATCACCGTTGATTCAATTTTGC 59.673 41.667 1.78 0.00 42.95 3.68
303 304 5.468592 TGGATCACCGTTGATTCAATTTTG 58.531 37.500 0.67 0.78 43.74 2.44
304 305 5.336690 CCTGGATCACCGTTGATTCAATTTT 60.337 40.000 5.36 0.00 45.62 1.82
305 306 4.158394 CCTGGATCACCGTTGATTCAATTT 59.842 41.667 5.36 0.00 45.62 1.82
306 307 3.696051 CCTGGATCACCGTTGATTCAATT 59.304 43.478 5.36 0.00 45.62 2.32
307 308 3.282021 CCTGGATCACCGTTGATTCAAT 58.718 45.455 5.36 0.00 45.62 2.57
308 309 2.039746 ACCTGGATCACCGTTGATTCAA 59.960 45.455 5.36 0.00 45.62 2.69
309 310 1.628340 ACCTGGATCACCGTTGATTCA 59.372 47.619 3.66 3.66 44.39 2.57
310 311 2.403252 ACCTGGATCACCGTTGATTC 57.597 50.000 0.00 0.00 42.95 2.52
311 312 3.199946 ACATACCTGGATCACCGTTGATT 59.800 43.478 0.00 0.00 42.95 2.57
312 313 2.771943 ACATACCTGGATCACCGTTGAT 59.228 45.455 0.00 0.00 45.78 2.57
313 314 2.093711 CACATACCTGGATCACCGTTGA 60.094 50.000 0.00 0.00 39.42 3.18
314 315 2.093711 TCACATACCTGGATCACCGTTG 60.094 50.000 0.00 0.00 39.42 4.10
315 316 2.184533 TCACATACCTGGATCACCGTT 58.815 47.619 0.00 0.00 39.42 4.44
316 317 1.860641 TCACATACCTGGATCACCGT 58.139 50.000 0.00 0.00 39.42 4.83
317 318 2.093711 TGTTCACATACCTGGATCACCG 60.094 50.000 0.00 0.00 39.42 4.94
318 319 3.627395 TGTTCACATACCTGGATCACC 57.373 47.619 0.00 0.00 0.00 4.02
319 320 4.142902 CGTTTGTTCACATACCTGGATCAC 60.143 45.833 0.00 0.00 0.00 3.06
320 321 4.000325 CGTTTGTTCACATACCTGGATCA 59.000 43.478 0.00 0.00 0.00 2.92
321 322 4.250464 TCGTTTGTTCACATACCTGGATC 58.750 43.478 0.00 0.00 0.00 3.36
322 323 4.253685 CTCGTTTGTTCACATACCTGGAT 58.746 43.478 0.00 0.00 0.00 3.41
323 324 3.070446 ACTCGTTTGTTCACATACCTGGA 59.930 43.478 0.00 0.00 0.00 3.86
324 325 3.399330 ACTCGTTTGTTCACATACCTGG 58.601 45.455 0.00 0.00 0.00 4.45
325 326 6.533819 TTAACTCGTTTGTTCACATACCTG 57.466 37.500 0.00 0.00 0.00 4.00
326 327 6.987992 TCTTTAACTCGTTTGTTCACATACCT 59.012 34.615 0.00 0.00 0.00 3.08
327 328 7.181143 TCTTTAACTCGTTTGTTCACATACC 57.819 36.000 0.00 0.00 0.00 2.73
328 329 8.333186 ACTTCTTTAACTCGTTTGTTCACATAC 58.667 33.333 0.00 0.00 0.00 2.39
329 330 8.332464 CACTTCTTTAACTCGTTTGTTCACATA 58.668 33.333 0.00 0.00 0.00 2.29
330 331 7.186804 CACTTCTTTAACTCGTTTGTTCACAT 58.813 34.615 0.00 0.00 0.00 3.21
331 332 6.539324 CACTTCTTTAACTCGTTTGTTCACA 58.461 36.000 0.00 0.00 0.00 3.58
332 333 5.451342 GCACTTCTTTAACTCGTTTGTTCAC 59.549 40.000 0.00 0.00 0.00 3.18
333 334 5.448089 GGCACTTCTTTAACTCGTTTGTTCA 60.448 40.000 0.00 0.00 0.00 3.18
334 335 4.968181 GGCACTTCTTTAACTCGTTTGTTC 59.032 41.667 0.00 0.00 0.00 3.18
335 336 4.396790 TGGCACTTCTTTAACTCGTTTGTT 59.603 37.500 0.00 0.00 0.00 2.83
336 337 3.942748 TGGCACTTCTTTAACTCGTTTGT 59.057 39.130 0.00 0.00 0.00 2.83
337 338 4.201871 TGTGGCACTTCTTTAACTCGTTTG 60.202 41.667 19.83 0.00 0.00 2.93
338 339 3.942748 TGTGGCACTTCTTTAACTCGTTT 59.057 39.130 19.83 0.00 0.00 3.60
339 340 3.311596 GTGTGGCACTTCTTTAACTCGTT 59.688 43.478 19.83 0.00 0.00 3.85
340 341 2.870411 GTGTGGCACTTCTTTAACTCGT 59.130 45.455 19.83 0.00 0.00 4.18
341 342 2.869801 TGTGTGGCACTTCTTTAACTCG 59.130 45.455 19.83 0.00 35.11 4.18
342 343 4.275936 ACATGTGTGGCACTTCTTTAACTC 59.724 41.667 19.83 0.00 35.11 3.01
343 344 4.036734 CACATGTGTGGCACTTCTTTAACT 59.963 41.667 19.83 0.00 42.10 2.24
344 345 4.290155 CACATGTGTGGCACTTCTTTAAC 58.710 43.478 19.83 7.12 42.10 2.01
345 346 4.566545 CACATGTGTGGCACTTCTTTAA 57.433 40.909 19.83 0.00 42.10 1.52
357 358 1.003839 ACTACCGCCCACATGTGTG 60.004 57.895 23.79 14.60 45.23 3.82
358 359 1.003839 CACTACCGCCCACATGTGT 60.004 57.895 23.79 8.06 0.00 3.72
359 360 0.605319 AACACTACCGCCCACATGTG 60.605 55.000 19.31 19.31 0.00 3.21
360 361 0.109723 AAACACTACCGCCCACATGT 59.890 50.000 0.00 0.00 0.00 3.21
361 362 0.802494 GAAACACTACCGCCCACATG 59.198 55.000 0.00 0.00 0.00 3.21
362 363 0.322187 GGAAACACTACCGCCCACAT 60.322 55.000 0.00 0.00 0.00 3.21
363 364 1.071814 GGAAACACTACCGCCCACA 59.928 57.895 0.00 0.00 0.00 4.17
364 365 0.535553 TTGGAAACACTACCGCCCAC 60.536 55.000 0.00 0.00 42.67 4.61
365 366 0.183014 TTTGGAAACACTACCGCCCA 59.817 50.000 0.00 0.00 42.67 5.36
366 367 1.320507 TTTTGGAAACACTACCGCCC 58.679 50.000 0.00 0.00 42.67 6.13
383 384 5.099575 CCGTAAGTGCAGTGTTTTCTTTTT 58.900 37.500 0.00 0.00 0.00 1.94
384 385 4.396790 TCCGTAAGTGCAGTGTTTTCTTTT 59.603 37.500 0.00 0.00 0.00 2.27
385 386 3.942748 TCCGTAAGTGCAGTGTTTTCTTT 59.057 39.130 0.00 0.00 0.00 2.52
386 387 3.537580 TCCGTAAGTGCAGTGTTTTCTT 58.462 40.909 0.00 0.00 0.00 2.52
387 388 3.188159 TCCGTAAGTGCAGTGTTTTCT 57.812 42.857 0.00 0.00 0.00 2.52
388 389 3.496884 TCATCCGTAAGTGCAGTGTTTTC 59.503 43.478 0.00 0.00 0.00 2.29
389 390 3.250040 GTCATCCGTAAGTGCAGTGTTTT 59.750 43.478 0.00 0.00 0.00 2.43
390 391 2.806244 GTCATCCGTAAGTGCAGTGTTT 59.194 45.455 0.00 0.00 0.00 2.83
391 392 2.413837 GTCATCCGTAAGTGCAGTGTT 58.586 47.619 0.00 0.00 0.00 3.32
392 393 1.668919 CGTCATCCGTAAGTGCAGTGT 60.669 52.381 0.00 0.00 0.00 3.55
393 394 0.992072 CGTCATCCGTAAGTGCAGTG 59.008 55.000 0.00 0.00 0.00 3.66
394 395 3.418675 CGTCATCCGTAAGTGCAGT 57.581 52.632 0.00 0.00 0.00 4.40
404 405 0.647410 GCTTCATCACACGTCATCCG 59.353 55.000 0.00 0.00 44.03 4.18
405 406 1.662629 CTGCTTCATCACACGTCATCC 59.337 52.381 0.00 0.00 0.00 3.51
406 407 1.061711 GCTGCTTCATCACACGTCATC 59.938 52.381 0.00 0.00 0.00 2.92
407 408 1.081892 GCTGCTTCATCACACGTCAT 58.918 50.000 0.00 0.00 0.00 3.06
408 409 0.249826 TGCTGCTTCATCACACGTCA 60.250 50.000 0.00 0.00 0.00 4.35
409 410 1.081892 ATGCTGCTTCATCACACGTC 58.918 50.000 0.00 0.00 0.00 4.34
410 411 1.527034 AATGCTGCTTCATCACACGT 58.473 45.000 0.00 0.00 0.00 4.49
411 412 2.624316 AAATGCTGCTTCATCACACG 57.376 45.000 0.00 0.00 0.00 4.49
468 469 2.223340 GGTTGTGCAGTGACAAGAACTG 60.223 50.000 0.00 0.00 46.39 3.16
469 470 2.017049 GGTTGTGCAGTGACAAGAACT 58.983 47.619 0.00 0.00 36.51 3.01
470 471 1.065551 GGGTTGTGCAGTGACAAGAAC 59.934 52.381 0.00 0.00 36.51 3.01
471 472 1.388547 GGGTTGTGCAGTGACAAGAA 58.611 50.000 0.00 0.00 36.51 2.52
472 473 0.465460 GGGGTTGTGCAGTGACAAGA 60.465 55.000 0.00 0.00 36.51 3.02
473 474 0.751277 TGGGGTTGTGCAGTGACAAG 60.751 55.000 0.00 0.00 36.51 3.16
570 571 3.246699 TCGTGAATTCAGTTTGTTCGACC 59.753 43.478 8.80 0.00 0.00 4.79
573 574 5.336990 GTGATTCGTGAATTCAGTTTGTTCG 59.663 40.000 8.80 7.20 0.00 3.95
581 582 3.511699 TCCTCGTGATTCGTGAATTCAG 58.488 45.455 8.80 3.55 40.80 3.02
593 594 3.835395 AGAAGAAACTTCCTCCTCGTGAT 59.165 43.478 7.72 0.00 0.00 3.06
594 595 3.231818 AGAAGAAACTTCCTCCTCGTGA 58.768 45.455 7.72 0.00 0.00 4.35
595 596 3.669251 AGAAGAAACTTCCTCCTCGTG 57.331 47.619 7.72 0.00 0.00 4.35
596 597 4.381411 CAAAGAAGAAACTTCCTCCTCGT 58.619 43.478 7.72 0.00 0.00 4.18
597 598 3.187432 GCAAAGAAGAAACTTCCTCCTCG 59.813 47.826 7.72 0.00 0.00 4.63
598 599 4.137543 TGCAAAGAAGAAACTTCCTCCTC 58.862 43.478 7.72 0.00 0.00 3.71
599 600 4.170468 TGCAAAGAAGAAACTTCCTCCT 57.830 40.909 7.72 0.00 0.00 3.69
1016 1017 3.408501 CTGTCGCTGGAGGAGCTCG 62.409 68.421 7.83 0.00 46.64 5.03
1062 1063 3.002791 CAAGTACGTGCAGATGTTCCAT 58.997 45.455 6.38 0.00 0.00 3.41
1209 1210 2.048222 TGGCTGAAGAACGCGGAG 60.048 61.111 12.47 0.00 0.00 4.63
1257 1264 2.624316 TGGACGTAGAACTAACGCAG 57.376 50.000 0.00 0.00 44.04 5.18
1282 1289 3.510360 ACTTCTACTGATTAGCACGTGGT 59.490 43.478 25.12 25.12 0.00 4.16
1312 1325 1.225376 CGCAAGTTCTTGGTACCGCA 61.225 55.000 7.57 0.00 0.00 5.69
1315 1328 1.495951 CGCGCAAGTTCTTGGTACC 59.504 57.895 8.75 4.43 41.68 3.34
1371 1384 1.225704 GCCAAGGACCTCATCAGGG 59.774 63.158 0.00 0.00 45.53 4.45
1411 1424 2.943978 CGACTTCAACCGGGAGCCT 61.944 63.158 6.32 0.00 0.00 4.58
1555 1568 4.821589 CCCGAGGTCCTCAAGCGC 62.822 72.222 19.15 0.00 0.00 5.92
1745 1758 5.587033 ACGAACTAAGTTTCCATTCGAAC 57.413 39.130 11.24 0.00 43.66 3.95
1746 1759 4.383649 CGACGAACTAAGTTTCCATTCGAA 59.616 41.667 11.24 0.00 43.66 3.71
1747 1760 3.916172 CGACGAACTAAGTTTCCATTCGA 59.084 43.478 11.24 0.00 43.66 3.71
1748 1761 3.481467 GCGACGAACTAAGTTTCCATTCG 60.481 47.826 0.00 3.34 45.76 3.34
1749 1762 3.181523 GGCGACGAACTAAGTTTCCATTC 60.182 47.826 0.00 0.00 0.00 2.67
1750 1763 2.740447 GGCGACGAACTAAGTTTCCATT 59.260 45.455 0.00 0.00 0.00 3.16
1751 1764 2.028385 AGGCGACGAACTAAGTTTCCAT 60.028 45.455 0.00 0.00 0.00 3.41
1752 1765 1.342174 AGGCGACGAACTAAGTTTCCA 59.658 47.619 0.00 0.00 0.00 3.53
1753 1766 2.075979 AGGCGACGAACTAAGTTTCC 57.924 50.000 0.00 0.00 0.00 3.13
1754 1767 2.090195 CGAAGGCGACGAACTAAGTTTC 59.910 50.000 0.00 0.00 40.82 2.78
1755 1768 2.056577 CGAAGGCGACGAACTAAGTTT 58.943 47.619 0.00 0.00 40.82 2.66
1757 1770 0.595095 ACGAAGGCGACGAACTAAGT 59.405 50.000 12.47 0.00 41.64 2.24
1899 1920 3.138798 GGCCACTACTCCGAGCGA 61.139 66.667 0.00 0.00 0.00 4.93
2298 2322 3.554692 GCCAAGATGACGTCCGCG 61.555 66.667 14.12 0.00 44.93 6.46
2355 2379 3.346631 CTCCAGGCGCAACAATGGC 62.347 63.158 10.83 0.00 32.63 4.40
2387 2411 1.258445 GGACCGCTCCTCCAAGAAGA 61.258 60.000 0.00 0.00 33.07 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.