Multiple sequence alignment - TraesCS7A01G266500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G266500 chr7A 100.000 3690 0 0 1 3690 268868822 268865133 0.000000e+00 6815.0
1 TraesCS7A01G266500 chr7A 95.833 72 3 0 3443 3514 268865304 268865233 2.330000e-22 117.0
2 TraesCS7A01G266500 chr7A 95.833 72 3 0 3519 3590 268865380 268865309 2.330000e-22 117.0
3 TraesCS7A01G266500 chr7B 91.491 2997 157 33 734 3690 228914699 228917637 0.000000e+00 4032.0
4 TraesCS7A01G266500 chr7B 97.059 68 2 0 3519 3586 228917389 228917456 8.370000e-22 115.0
5 TraesCS7A01G266500 chr7B 94.444 72 4 0 3443 3514 228917465 228917536 1.080000e-20 111.0
6 TraesCS7A01G266500 chr7D 91.005 1612 110 20 2091 3690 252239932 252241520 0.000000e+00 2141.0
7 TraesCS7A01G266500 chr7D 87.111 1319 55 47 742 2039 252238710 252239934 0.000000e+00 1387.0
8 TraesCS7A01G266500 chr7D 95.833 72 3 0 3519 3590 252241274 252241345 2.330000e-22 117.0
9 TraesCS7A01G266500 chr7D 95.000 40 1 1 2049 2088 192027826 192027788 1.110000e-05 62.1
10 TraesCS7A01G266500 chr2B 85.220 636 83 8 1 629 113029611 113030242 0.000000e+00 643.0
11 TraesCS7A01G266500 chr2B 90.786 369 34 0 1 369 494856038 494855670 9.210000e-136 494.0
12 TraesCS7A01G266500 chr1A 84.038 639 77 18 6 632 574621610 574622235 3.170000e-165 592.0
13 TraesCS7A01G266500 chr3B 82.126 621 85 16 1 608 21369026 21368419 3.290000e-140 508.0
14 TraesCS7A01G266500 chr3B 88.679 371 40 1 3 371 501526924 501527294 5.620000e-123 451.0
15 TraesCS7A01G266500 chr3B 92.500 40 2 1 2051 2090 160687277 160687315 5.150000e-04 56.5
16 TraesCS7A01G266500 chrUn 78.898 635 110 18 1 625 231622450 231621830 3.430000e-110 409.0
17 TraesCS7A01G266500 chr6A 78.898 635 110 18 1 625 3701656 3701036 3.430000e-110 409.0
18 TraesCS7A01G266500 chr6A 92.683 41 3 0 2050 2090 510884235 510884275 3.980000e-05 60.2
19 TraesCS7A01G266500 chr5A 86.016 379 52 1 1 379 625694301 625693924 4.440000e-109 405.0
20 TraesCS7A01G266500 chr5A 85.638 376 54 0 1 376 515941991 515941616 2.670000e-106 396.0
21 TraesCS7A01G266500 chr5D 97.561 41 1 0 2050 2090 299819556 299819516 1.840000e-08 71.3
22 TraesCS7A01G266500 chr1D 95.556 45 1 1 2047 2090 452753099 452753055 1.840000e-08 71.3
23 TraesCS7A01G266500 chr4D 91.111 45 4 0 1905 1949 176779472 176779516 1.110000e-05 62.1
24 TraesCS7A01G266500 chr4D 100.000 28 0 0 1916 1943 138284413 138284386 7.000000e-03 52.8
25 TraesCS7A01G266500 chr4A 100.000 30 0 0 2062 2091 625266091 625266120 5.150000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G266500 chr7A 268865133 268868822 3689 True 2349.666667 6815 97.222000 1 3690 3 chr7A.!!$R1 3689
1 TraesCS7A01G266500 chr7B 228914699 228917637 2938 False 1419.333333 4032 94.331333 734 3690 3 chr7B.!!$F1 2956
2 TraesCS7A01G266500 chr7D 252238710 252241520 2810 False 1215.000000 2141 91.316333 742 3690 3 chr7D.!!$F1 2948
3 TraesCS7A01G266500 chr2B 113029611 113030242 631 False 643.000000 643 85.220000 1 629 1 chr2B.!!$F1 628
4 TraesCS7A01G266500 chr1A 574621610 574622235 625 False 592.000000 592 84.038000 6 632 1 chr1A.!!$F1 626
5 TraesCS7A01G266500 chr3B 21368419 21369026 607 True 508.000000 508 82.126000 1 608 1 chr3B.!!$R1 607
6 TraesCS7A01G266500 chrUn 231621830 231622450 620 True 409.000000 409 78.898000 1 625 1 chrUn.!!$R1 624
7 TraesCS7A01G266500 chr6A 3701036 3701656 620 True 409.000000 409 78.898000 1 625 1 chr6A.!!$R1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 812 0.457337 GCGTCCCGTACAAGAACGAT 60.457 55.0 10.19 0.0 45.68 3.73 F
1387 1436 1.011968 TGTACGTTCGCCATGACAGC 61.012 55.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 1999 0.913934 TTGATGCAGAGGCCAGGGTA 60.914 55.0 5.01 0.0 40.13 3.69 R
3081 3167 0.519961 GGTTCCACGTAACCACATGC 59.480 55.0 14.14 0.0 46.85 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 5.654901 TGTACTGGATGAGAGGAGATAGT 57.345 43.478 0.00 0.00 0.00 2.12
187 188 7.442666 GGTTTTTAATAATGTTTGTTGGCCTGA 59.557 33.333 3.32 0.00 0.00 3.86
189 190 6.656632 TTAATAATGTTTGTTGGCCTGACA 57.343 33.333 3.32 6.34 0.00 3.58
233 234 8.969260 AAACTGCATCAAATCTATCTACATGA 57.031 30.769 0.00 0.00 0.00 3.07
236 237 8.427276 ACTGCATCAAATCTATCTACATGAGAA 58.573 33.333 0.00 0.00 37.85 2.87
256 257 1.352622 TGCCTTTCCTCAGGGTGTGT 61.353 55.000 0.00 0.00 34.01 3.72
271 272 2.639065 GTGTGTCAAGGACAAGTTGGA 58.361 47.619 7.96 0.00 44.49 3.53
278 279 1.603739 GGACAAGTTGGAGTGGGCC 60.604 63.158 7.96 0.00 0.00 5.80
407 427 2.820787 AGTTTCTAGCAGCTCTACACGT 59.179 45.455 0.00 0.00 0.00 4.49
408 428 3.256136 AGTTTCTAGCAGCTCTACACGTT 59.744 43.478 0.00 0.00 0.00 3.99
411 431 5.381174 TTCTAGCAGCTCTACACGTTTAA 57.619 39.130 0.00 0.00 0.00 1.52
412 432 5.381174 TCTAGCAGCTCTACACGTTTAAA 57.619 39.130 0.00 0.00 0.00 1.52
414 434 4.992381 AGCAGCTCTACACGTTTAAAAG 57.008 40.909 0.00 0.00 0.00 2.27
415 435 4.628074 AGCAGCTCTACACGTTTAAAAGA 58.372 39.130 8.18 0.00 0.00 2.52
416 436 5.054477 AGCAGCTCTACACGTTTAAAAGAA 58.946 37.500 8.18 0.00 0.00 2.52
444 465 2.028658 TCTCTTGTTGCTGTCTAGGCTG 60.029 50.000 0.00 0.00 0.00 4.85
464 485 1.226888 GGCGTATGTCACCGGAGTC 60.227 63.158 9.46 0.00 0.00 3.36
468 489 1.202268 CGTATGTCACCGGAGTCCTTC 60.202 57.143 9.46 0.00 0.00 3.46
484 509 5.241662 AGTCCTTCTCTTTATGTCTGCAAC 58.758 41.667 0.00 0.00 0.00 4.17
485 510 5.012561 AGTCCTTCTCTTTATGTCTGCAACT 59.987 40.000 0.00 0.00 0.00 3.16
486 511 5.350091 GTCCTTCTCTTTATGTCTGCAACTC 59.650 44.000 0.00 0.00 0.00 3.01
487 512 5.247110 TCCTTCTCTTTATGTCTGCAACTCT 59.753 40.000 0.00 0.00 0.00 3.24
488 513 5.580297 CCTTCTCTTTATGTCTGCAACTCTC 59.420 44.000 0.00 0.00 0.00 3.20
489 514 5.991933 TCTCTTTATGTCTGCAACTCTCT 57.008 39.130 0.00 0.00 0.00 3.10
490 515 7.363355 CCTTCTCTTTATGTCTGCAACTCTCTA 60.363 40.741 0.00 0.00 0.00 2.43
491 516 6.857956 TCTCTTTATGTCTGCAACTCTCTAC 58.142 40.000 0.00 0.00 0.00 2.59
612 650 2.112297 GGAACAGGGACGCAACCA 59.888 61.111 0.00 0.00 0.00 3.67
649 687 8.532977 AAAAATATGTCACCTCAATTTTTCGG 57.467 30.769 0.00 0.00 35.79 4.30
650 688 7.461182 AAATATGTCACCTCAATTTTTCGGA 57.539 32.000 0.00 0.00 0.00 4.55
651 689 6.683974 ATATGTCACCTCAATTTTTCGGAG 57.316 37.500 0.00 0.00 0.00 4.63
652 690 4.079980 TGTCACCTCAATTTTTCGGAGA 57.920 40.909 0.00 0.00 0.00 3.71
653 691 4.651778 TGTCACCTCAATTTTTCGGAGAT 58.348 39.130 0.00 0.00 35.04 2.75
654 692 4.455533 TGTCACCTCAATTTTTCGGAGATG 59.544 41.667 0.00 0.00 35.04 2.90
655 693 3.440173 TCACCTCAATTTTTCGGAGATGC 59.560 43.478 0.00 0.00 35.04 3.91
656 694 3.441572 CACCTCAATTTTTCGGAGATGCT 59.558 43.478 0.00 0.00 35.04 3.79
657 695 3.691609 ACCTCAATTTTTCGGAGATGCTC 59.308 43.478 0.00 0.00 35.04 4.26
658 696 3.242543 CCTCAATTTTTCGGAGATGCTCG 60.243 47.826 0.00 0.00 35.04 5.03
659 697 3.334691 TCAATTTTTCGGAGATGCTCGT 58.665 40.909 0.00 0.00 35.04 4.18
660 698 4.500127 TCAATTTTTCGGAGATGCTCGTA 58.500 39.130 0.00 0.00 35.04 3.43
661 699 4.932799 TCAATTTTTCGGAGATGCTCGTAA 59.067 37.500 0.00 0.00 35.04 3.18
662 700 5.063438 TCAATTTTTCGGAGATGCTCGTAAG 59.937 40.000 0.00 0.00 35.04 2.34
663 701 3.861276 TTTTCGGAGATGCTCGTAAGA 57.139 42.857 0.00 0.00 40.61 2.10
664 702 3.861276 TTTCGGAGATGCTCGTAAGAA 57.139 42.857 0.00 0.00 42.29 2.52
665 703 4.386867 TTTCGGAGATGCTCGTAAGAAT 57.613 40.909 0.00 0.00 42.29 2.40
666 704 5.509716 TTTCGGAGATGCTCGTAAGAATA 57.490 39.130 0.00 0.00 42.29 1.75
667 705 5.509716 TTCGGAGATGCTCGTAAGAATAA 57.490 39.130 0.00 0.00 42.29 1.40
668 706 5.520632 TTCGGAGATGCTCGTAAGAATAAG 58.479 41.667 0.00 0.00 42.29 1.73
669 707 5.507482 TTCGGAGATGCTCGTAAGAATAAGG 60.507 44.000 0.00 0.00 42.29 2.69
670 708 8.397096 TTCGGAGATGCTCGTAAGAATAAGGG 62.397 46.154 0.00 0.00 42.29 3.95
679 717 4.737054 CGTAAGAATAAGGGTGTACGTGT 58.263 43.478 0.00 0.00 43.02 4.49
680 718 4.560035 CGTAAGAATAAGGGTGTACGTGTG 59.440 45.833 0.00 0.00 43.02 3.82
681 719 4.612264 AAGAATAAGGGTGTACGTGTGT 57.388 40.909 0.00 0.00 0.00 3.72
682 720 3.921677 AGAATAAGGGTGTACGTGTGTG 58.078 45.455 0.00 0.00 0.00 3.82
683 721 3.322828 AGAATAAGGGTGTACGTGTGTGT 59.677 43.478 0.00 0.00 0.00 3.72
684 722 3.756933 ATAAGGGTGTACGTGTGTGTT 57.243 42.857 0.00 0.00 0.00 3.32
685 723 1.944032 AAGGGTGTACGTGTGTGTTC 58.056 50.000 0.00 0.00 0.00 3.18
686 724 0.825410 AGGGTGTACGTGTGTGTTCA 59.175 50.000 0.00 0.00 0.00 3.18
687 725 1.414919 AGGGTGTACGTGTGTGTTCAT 59.585 47.619 0.00 0.00 0.00 2.57
688 726 2.629137 AGGGTGTACGTGTGTGTTCATA 59.371 45.455 0.00 0.00 0.00 2.15
689 727 2.991190 GGGTGTACGTGTGTGTTCATAG 59.009 50.000 0.00 0.00 0.00 2.23
690 728 3.305539 GGGTGTACGTGTGTGTTCATAGA 60.306 47.826 0.00 0.00 0.00 1.98
691 729 4.300803 GGTGTACGTGTGTGTTCATAGAA 58.699 43.478 0.00 0.00 0.00 2.10
692 730 4.746115 GGTGTACGTGTGTGTTCATAGAAA 59.254 41.667 0.00 0.00 0.00 2.52
693 731 5.407387 GGTGTACGTGTGTGTTCATAGAAAT 59.593 40.000 0.00 0.00 0.00 2.17
694 732 6.587226 GGTGTACGTGTGTGTTCATAGAAATA 59.413 38.462 0.00 0.00 0.00 1.40
695 733 7.116662 GGTGTACGTGTGTGTTCATAGAAATAA 59.883 37.037 0.00 0.00 0.00 1.40
696 734 8.160342 GTGTACGTGTGTGTTCATAGAAATAAG 58.840 37.037 0.00 0.00 0.00 1.73
697 735 6.721571 ACGTGTGTGTTCATAGAAATAAGG 57.278 37.500 0.00 0.00 0.00 2.69
698 736 5.642063 ACGTGTGTGTTCATAGAAATAAGGG 59.358 40.000 0.00 0.00 0.00 3.95
699 737 5.642063 CGTGTGTGTTCATAGAAATAAGGGT 59.358 40.000 0.00 0.00 0.00 4.34
700 738 6.814644 CGTGTGTGTTCATAGAAATAAGGGTA 59.185 38.462 0.00 0.00 0.00 3.69
701 739 7.494625 CGTGTGTGTTCATAGAAATAAGGGTAT 59.505 37.037 0.00 0.00 0.00 2.73
702 740 8.612619 GTGTGTGTTCATAGAAATAAGGGTATG 58.387 37.037 0.00 0.00 0.00 2.39
703 741 7.282224 TGTGTGTTCATAGAAATAAGGGTATGC 59.718 37.037 0.00 0.00 0.00 3.14
704 742 6.481976 TGTGTTCATAGAAATAAGGGTATGCG 59.518 38.462 0.00 0.00 0.00 4.73
705 743 5.468746 TGTTCATAGAAATAAGGGTATGCGC 59.531 40.000 0.00 0.00 0.00 6.09
706 744 5.222079 TCATAGAAATAAGGGTATGCGCA 57.778 39.130 14.96 14.96 0.00 6.09
707 745 5.804639 TCATAGAAATAAGGGTATGCGCAT 58.195 37.500 28.23 28.23 0.00 4.73
708 746 6.941857 TCATAGAAATAAGGGTATGCGCATA 58.058 36.000 25.78 25.78 0.00 3.14
709 747 7.564793 TCATAGAAATAAGGGTATGCGCATAT 58.435 34.615 31.14 18.45 0.00 1.78
710 748 8.700973 TCATAGAAATAAGGGTATGCGCATATA 58.299 33.333 31.14 19.95 0.00 0.86
711 749 9.494271 CATAGAAATAAGGGTATGCGCATATAT 57.506 33.333 31.14 21.17 0.00 0.86
720 758 9.627123 AAGGGTATGCGCATATATATAAATGTT 57.373 29.630 31.14 11.35 0.00 2.71
721 759 9.056005 AGGGTATGCGCATATATATAAATGTTG 57.944 33.333 31.14 0.00 0.00 3.33
722 760 8.836413 GGGTATGCGCATATATATAAATGTTGT 58.164 33.333 31.14 3.29 0.00 3.32
723 761 9.650371 GGTATGCGCATATATATAAATGTTGTG 57.350 33.333 31.14 0.00 0.00 3.33
726 764 8.546597 TGCGCATATATATAAATGTTGTGTCT 57.453 30.769 5.66 0.00 0.00 3.41
727 765 8.442384 TGCGCATATATATAAATGTTGTGTCTG 58.558 33.333 5.66 0.00 0.00 3.51
728 766 8.443160 GCGCATATATATAAATGTTGTGTCTGT 58.557 33.333 0.30 0.00 0.00 3.41
774 812 0.457337 GCGTCCCGTACAAGAACGAT 60.457 55.000 10.19 0.00 45.68 3.73
802 840 3.327626 TCTAGCGGCGTTGATTTAACAA 58.672 40.909 9.37 0.00 39.30 2.83
804 842 2.928694 AGCGGCGTTGATTTAACAAAG 58.071 42.857 9.37 0.00 39.30 2.77
808 846 2.923643 GCGTTGATTTAACAAAGCCGA 58.076 42.857 0.00 0.00 44.69 5.54
811 851 3.356658 CGTTGATTTAACAAAGCCGAACG 59.643 43.478 0.00 0.00 39.30 3.95
923 972 4.953940 ATTTGCTCTATCCACTCTCTCC 57.046 45.455 0.00 0.00 0.00 3.71
927 976 2.500229 CTCTATCCACTCTCTCCCGTC 58.500 57.143 0.00 0.00 0.00 4.79
943 992 2.031616 TCGACTCGTCCGTGGTCT 59.968 61.111 0.00 0.00 0.00 3.85
951 1000 1.080025 GTCCGTGGTCTTCTTCCCG 60.080 63.158 0.00 0.00 0.00 5.14
952 1001 2.264794 CCGTGGTCTTCTTCCCGG 59.735 66.667 0.00 0.00 34.48 5.73
959 1008 4.814294 CTTCTTCCCGGGCCGTCG 62.814 72.222 26.32 14.67 0.00 5.12
974 1023 2.617538 TCGTCCTCCTCCTCCCCT 60.618 66.667 0.00 0.00 0.00 4.79
985 1034 4.845307 CTCCCCTTCCCCCTCCCC 62.845 77.778 0.00 0.00 0.00 4.81
988 1037 4.845307 CCCTTCCCCCTCCCCCTC 62.845 77.778 0.00 0.00 0.00 4.30
989 1038 3.711782 CCTTCCCCCTCCCCCTCT 61.712 72.222 0.00 0.00 0.00 3.69
990 1039 2.040359 CTTCCCCCTCCCCCTCTC 60.040 72.222 0.00 0.00 0.00 3.20
991 1040 3.707189 TTCCCCCTCCCCCTCTCC 61.707 72.222 0.00 0.00 0.00 3.71
1011 1060 1.688772 CTAATCCAATGGCTGCTGCT 58.311 50.000 15.64 0.00 39.59 4.24
1209 1258 2.354305 GCTGACGACGACAACGGT 60.354 61.111 0.00 0.00 44.46 4.83
1260 1309 2.032071 GTGGTTCTGGGGGTGTCG 59.968 66.667 0.00 0.00 0.00 4.35
1263 1312 2.048503 GTTCTGGGGGTGTCGTCG 60.049 66.667 0.00 0.00 0.00 5.12
1272 1321 2.127270 GTGTCGTCGTCCGCGTTA 60.127 61.111 4.92 0.00 39.49 3.18
1385 1434 2.087501 AATGTACGTTCGCCATGACA 57.912 45.000 0.00 0.00 0.00 3.58
1386 1435 1.640428 ATGTACGTTCGCCATGACAG 58.360 50.000 0.00 0.00 0.00 3.51
1387 1436 1.011968 TGTACGTTCGCCATGACAGC 61.012 55.000 0.00 0.00 0.00 4.40
1388 1437 1.011968 GTACGTTCGCCATGACAGCA 61.012 55.000 0.00 0.00 0.00 4.41
1390 1439 1.349627 CGTTCGCCATGACAGCATC 59.650 57.895 0.00 0.00 30.68 3.91
1393 1442 2.212652 GTTCGCCATGACAGCATCATA 58.787 47.619 3.39 0.00 46.96 2.15
1403 1453 3.118149 TGACAGCATCATAGGAATGCAGT 60.118 43.478 10.38 8.15 42.34 4.40
1407 1457 5.704515 ACAGCATCATAGGAATGCAGTATTC 59.295 40.000 10.38 2.68 43.25 1.75
1462 1512 1.321805 CCATGGAATCAGGCCGCAAA 61.322 55.000 5.56 0.00 0.00 3.68
1617 1673 1.019278 TCTTTCGACGATTGCCTGCC 61.019 55.000 0.00 0.00 0.00 4.85
1710 1784 6.299922 ACAGATATTCGACAGGTGAGAGATA 58.700 40.000 0.00 0.00 0.00 1.98
1937 2012 3.635510 GGAGTACCCTGGCCTCTG 58.364 66.667 3.32 0.00 0.00 3.35
1944 2019 1.751927 CCCTGGCCTCTGCATCAAC 60.752 63.158 3.32 0.00 40.13 3.18
1988 2064 6.347969 GGAAGTGACGACTAAAATTAACCCAC 60.348 42.308 0.00 0.00 0.00 4.61
2083 2160 1.888215 ATAGCTCACCATTCATGCCG 58.112 50.000 0.00 0.00 0.00 5.69
2139 2216 7.210718 ACCCTTTGTTTTAATAGTAGCACAC 57.789 36.000 0.00 0.00 0.00 3.82
2178 2256 6.967135 TGCTCATCTTTATCATCTGCAATTC 58.033 36.000 0.00 0.00 0.00 2.17
2269 2349 5.972107 ATGCAGTTCATAGCTTCAAAGTT 57.028 34.783 0.00 0.00 32.59 2.66
2317 2397 7.485810 TCTTCTCATTCATATGTTTGGCAATG 58.514 34.615 0.00 4.61 33.34 2.82
2417 2497 5.069914 TCAAGTAAGTAGTCTTGCCTTGTCA 59.930 40.000 15.04 3.23 40.57 3.58
2427 2507 5.066505 AGTCTTGCCTTGTCAAGTTTAACAG 59.933 40.000 11.61 0.00 42.90 3.16
2525 2611 2.498167 CTGTGTTTCTTCAGTCTGGGG 58.502 52.381 0.00 0.00 0.00 4.96
2680 2766 1.830279 TCGTACCTGGTCTTGACGAT 58.170 50.000 16.28 0.00 37.60 3.73
2705 2791 4.014406 TGAGTGAAAGCATCATCTTGCAT 58.986 39.130 0.00 0.00 45.23 3.96
2740 2826 6.685657 GGCAACTGAAGAGAATGATTTTCTT 58.314 36.000 10.33 10.33 34.06 2.52
2759 2845 9.829507 ATTTTCTTTTTGTGAATTACCATGTGA 57.170 25.926 0.00 0.00 0.00 3.58
2789 2875 3.265791 ACAATTGTTTTCGGCAGCAAAA 58.734 36.364 4.92 0.00 0.00 2.44
2795 2881 5.378292 TGTTTTCGGCAGCAAAATATACA 57.622 34.783 0.00 0.00 0.00 2.29
2799 2885 6.698359 TTTCGGCAGCAAAATATACAAAAC 57.302 33.333 0.00 0.00 0.00 2.43
2833 2919 7.461182 TTGTATTAAGTGCATAGCAACCTTT 57.539 32.000 0.00 0.00 41.47 3.11
2895 2981 8.484214 AGATATGTGCTAATCCTTCTACTCAA 57.516 34.615 0.00 0.00 0.00 3.02
2911 2997 6.245408 TCTACTCAATTGCCCAGTGTTTTAT 58.755 36.000 0.00 0.00 0.00 1.40
2917 3003 3.168035 TGCCCAGTGTTTTATGTGGAT 57.832 42.857 0.00 0.00 31.04 3.41
2928 3014 6.310224 GTGTTTTATGTGGATATTTGGTGTGC 59.690 38.462 0.00 0.00 0.00 4.57
2929 3015 6.015095 TGTTTTATGTGGATATTTGGTGTGCA 60.015 34.615 0.00 0.00 0.00 4.57
2937 3023 5.105797 TGGATATTTGGTGTGCATTTCAGTC 60.106 40.000 0.00 0.00 0.00 3.51
2939 3025 4.877378 ATTTGGTGTGCATTTCAGTCAT 57.123 36.364 0.00 0.00 0.00 3.06
2950 3036 5.106436 TGCATTTCAGTCATGTGTCAGATTC 60.106 40.000 0.00 0.00 0.00 2.52
2955 3041 2.232208 AGTCATGTGTCAGATTCGCTCA 59.768 45.455 0.00 0.00 0.00 4.26
2999 3085 6.542370 GCACCCAATAGAGCAGTTTCTTAATA 59.458 38.462 0.00 0.00 0.00 0.98
3081 3167 4.280677 TGTGATTCCCTTTTACTTGCAAGG 59.719 41.667 29.18 12.07 39.58 3.61
3096 3182 0.521291 CAAGGCATGTGGTTACGTGG 59.479 55.000 0.00 0.00 42.76 4.94
3130 3216 1.782044 AACATGTGGTTTGCGCAATC 58.218 45.000 25.64 22.70 35.82 2.67
3134 3220 0.743688 TGTGGTTTGCGCAATCAACT 59.256 45.000 29.52 0.00 0.00 3.16
3141 3227 3.811722 TTGCGCAATCAACTCAACTAG 57.188 42.857 21.02 0.00 0.00 2.57
3143 3229 3.920446 TGCGCAATCAACTCAACTAGTA 58.080 40.909 8.16 0.00 37.50 1.82
3144 3230 4.503910 TGCGCAATCAACTCAACTAGTAT 58.496 39.130 8.16 0.00 37.50 2.12
3145 3231 5.656480 TGCGCAATCAACTCAACTAGTATA 58.344 37.500 8.16 0.00 37.50 1.47
3156 3242 9.275231 CAACTCAACTAGTATAAACGTACTCTG 57.725 37.037 0.00 0.00 37.50 3.35
3164 3250 6.985117 AGTATAAACGTACTCTGTTGGTGAA 58.015 36.000 0.00 0.00 28.99 3.18
3165 3251 6.865205 AGTATAAACGTACTCTGTTGGTGAAC 59.135 38.462 0.00 0.00 28.99 3.18
3171 3257 4.334481 CGTACTCTGTTGGTGAACCTTTTT 59.666 41.667 0.37 0.00 36.82 1.94
3262 3348 6.785191 ACGCATCATTTTGTATTCGAAGAAT 58.215 32.000 3.35 0.79 45.90 2.40
3331 3417 0.625849 ACGATGAAAAGGCCCCAGAT 59.374 50.000 0.00 0.00 0.00 2.90
3388 3474 3.973135 CAGCGCATGAGATTAAGAAATGC 59.027 43.478 11.47 0.00 40.14 3.56
3418 3504 4.142038 TCTTCCTTTGTAAACCAGCTTCC 58.858 43.478 0.00 0.00 0.00 3.46
3436 3522 2.826428 TCCTAATCAGATTGACAGCGC 58.174 47.619 5.85 0.00 0.00 5.92
3516 3602 2.028020 CACCTGTAGACCCCAGAAGTTC 60.028 54.545 0.00 0.00 31.38 3.01
3594 3680 3.775316 ACCTGTAGACCCCATAAGAACAG 59.225 47.826 0.00 0.00 34.15 3.16
3599 3685 6.258354 TGTAGACCCCATAAGAACAGAACTA 58.742 40.000 0.00 0.00 0.00 2.24
3629 3715 3.637229 AGAAGGAAGACTCGACAACTGAA 59.363 43.478 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 6.212840 ACTATCTCCTCTCATCCAGTACAT 57.787 41.667 0.00 0.00 0.00 2.29
73 74 5.654901 ACTATCTCCTCTCATCCAGTACA 57.345 43.478 0.00 0.00 0.00 2.90
83 84 2.863137 CGCAGCAAAACTATCTCCTCTC 59.137 50.000 0.00 0.00 0.00 3.20
95 96 6.247727 TGAACAATATTAGTCGCAGCAAAA 57.752 33.333 0.00 0.00 0.00 2.44
187 188 1.227764 CGCCAGATAGCCTGCATGT 60.228 57.895 0.00 0.00 41.57 3.21
189 190 0.181114 TTTCGCCAGATAGCCTGCAT 59.819 50.000 0.00 0.00 41.57 3.96
233 234 1.005215 CACCCTGAGGAAAGGCATTCT 59.995 52.381 0.00 0.00 38.18 2.40
236 237 0.038744 CACACCCTGAGGAAAGGCAT 59.961 55.000 0.00 0.00 35.85 4.40
256 257 1.142870 CCCACTCCAACTTGTCCTTGA 59.857 52.381 0.00 0.00 0.00 3.02
271 272 2.668550 GTTCTTTCGCGGCCCACT 60.669 61.111 6.13 0.00 0.00 4.00
278 279 1.996292 TCATCTCCAGTTCTTTCGCG 58.004 50.000 0.00 0.00 0.00 5.87
407 427 9.248291 GCAACAAGAGAACATCATTCTTTTAAA 57.752 29.630 0.00 0.00 0.00 1.52
408 428 8.632679 AGCAACAAGAGAACATCATTCTTTTAA 58.367 29.630 0.00 0.00 0.00 1.52
411 431 6.040166 ACAGCAACAAGAGAACATCATTCTTT 59.960 34.615 0.00 0.00 0.00 2.52
412 432 5.533903 ACAGCAACAAGAGAACATCATTCTT 59.466 36.000 0.00 0.00 0.00 2.52
414 434 5.180868 AGACAGCAACAAGAGAACATCATTC 59.819 40.000 0.00 0.00 0.00 2.67
415 435 5.068636 AGACAGCAACAAGAGAACATCATT 58.931 37.500 0.00 0.00 0.00 2.57
416 436 4.649692 AGACAGCAACAAGAGAACATCAT 58.350 39.130 0.00 0.00 0.00 2.45
444 465 3.441011 CTCCGGTGACATACGCCCC 62.441 68.421 0.00 0.00 45.52 5.80
464 485 5.486526 AGAGTTGCAGACATAAAGAGAAGG 58.513 41.667 0.00 0.00 0.00 3.46
468 489 6.862209 AGTAGAGAGTTGCAGACATAAAGAG 58.138 40.000 0.00 0.00 0.00 2.85
485 510 8.936864 GCAGCAAATAAAACTAGAAAGTAGAGA 58.063 33.333 0.00 0.00 33.75 3.10
486 511 8.940952 AGCAGCAAATAAAACTAGAAAGTAGAG 58.059 33.333 0.00 0.00 33.75 2.43
487 512 8.848474 AGCAGCAAATAAAACTAGAAAGTAGA 57.152 30.769 0.00 0.00 33.75 2.59
488 513 9.974750 GTAGCAGCAAATAAAACTAGAAAGTAG 57.025 33.333 0.00 0.00 33.75 2.57
489 514 9.720769 AGTAGCAGCAAATAAAACTAGAAAGTA 57.279 29.630 0.00 0.00 33.75 2.24
490 515 8.507249 CAGTAGCAGCAAATAAAACTAGAAAGT 58.493 33.333 0.00 0.00 37.65 2.66
491 516 7.483059 GCAGTAGCAGCAAATAAAACTAGAAAG 59.517 37.037 0.00 0.00 41.58 2.62
542 576 7.070322 TCAGTACAAGTCTTACAAGGTAGGTTT 59.930 37.037 0.00 0.00 0.00 3.27
632 670 4.672801 GCATCTCCGAAAAATTGAGGTGAC 60.673 45.833 7.08 0.00 39.14 3.67
633 671 3.440173 GCATCTCCGAAAAATTGAGGTGA 59.560 43.478 7.08 2.71 39.14 4.02
634 672 3.441572 AGCATCTCCGAAAAATTGAGGTG 59.558 43.478 0.00 0.00 39.66 4.00
635 673 3.690460 AGCATCTCCGAAAAATTGAGGT 58.310 40.909 0.00 0.00 0.00 3.85
636 674 3.242543 CGAGCATCTCCGAAAAATTGAGG 60.243 47.826 0.00 0.00 0.00 3.86
637 675 3.372206 ACGAGCATCTCCGAAAAATTGAG 59.628 43.478 0.00 0.00 0.00 3.02
638 676 3.334691 ACGAGCATCTCCGAAAAATTGA 58.665 40.909 0.00 0.00 0.00 2.57
639 677 3.747099 ACGAGCATCTCCGAAAAATTG 57.253 42.857 0.00 0.00 0.00 2.32
640 678 5.175859 TCTTACGAGCATCTCCGAAAAATT 58.824 37.500 0.00 0.00 0.00 1.82
641 679 4.755411 TCTTACGAGCATCTCCGAAAAAT 58.245 39.130 0.00 0.00 0.00 1.82
642 680 4.182693 TCTTACGAGCATCTCCGAAAAA 57.817 40.909 0.00 0.00 0.00 1.94
643 681 3.861276 TCTTACGAGCATCTCCGAAAA 57.139 42.857 0.00 0.00 0.00 2.29
644 682 3.861276 TTCTTACGAGCATCTCCGAAA 57.139 42.857 0.00 0.00 0.00 3.46
645 683 5.507482 CCTTATTCTTACGAGCATCTCCGAA 60.507 44.000 0.00 0.00 0.00 4.30
646 684 4.023107 CCTTATTCTTACGAGCATCTCCGA 60.023 45.833 0.00 0.00 0.00 4.55
647 685 4.230657 CCTTATTCTTACGAGCATCTCCG 58.769 47.826 0.00 0.00 0.00 4.63
648 686 4.039366 ACCCTTATTCTTACGAGCATCTCC 59.961 45.833 0.00 0.00 0.00 3.71
649 687 4.985409 CACCCTTATTCTTACGAGCATCTC 59.015 45.833 0.00 0.00 0.00 2.75
650 688 4.406003 ACACCCTTATTCTTACGAGCATCT 59.594 41.667 0.00 0.00 0.00 2.90
651 689 4.694339 ACACCCTTATTCTTACGAGCATC 58.306 43.478 0.00 0.00 0.00 3.91
652 690 4.755266 ACACCCTTATTCTTACGAGCAT 57.245 40.909 0.00 0.00 0.00 3.79
653 691 4.439153 CGTACACCCTTATTCTTACGAGCA 60.439 45.833 0.00 0.00 35.46 4.26
654 692 4.040376 CGTACACCCTTATTCTTACGAGC 58.960 47.826 0.00 0.00 35.46 5.03
655 693 5.032863 CACGTACACCCTTATTCTTACGAG 58.967 45.833 6.01 0.00 36.63 4.18
656 694 4.458989 ACACGTACACCCTTATTCTTACGA 59.541 41.667 6.01 0.00 36.63 3.43
657 695 4.560035 CACACGTACACCCTTATTCTTACG 59.440 45.833 0.00 0.00 38.56 3.18
658 696 5.346822 CACACACGTACACCCTTATTCTTAC 59.653 44.000 0.00 0.00 0.00 2.34
659 697 5.010922 ACACACACGTACACCCTTATTCTTA 59.989 40.000 0.00 0.00 0.00 2.10
660 698 4.202284 ACACACACGTACACCCTTATTCTT 60.202 41.667 0.00 0.00 0.00 2.52
661 699 3.322828 ACACACACGTACACCCTTATTCT 59.677 43.478 0.00 0.00 0.00 2.40
662 700 3.656559 ACACACACGTACACCCTTATTC 58.343 45.455 0.00 0.00 0.00 1.75
663 701 3.756933 ACACACACGTACACCCTTATT 57.243 42.857 0.00 0.00 0.00 1.40
664 702 3.069872 TGAACACACACGTACACCCTTAT 59.930 43.478 0.00 0.00 0.00 1.73
665 703 2.429971 TGAACACACACGTACACCCTTA 59.570 45.455 0.00 0.00 0.00 2.69
666 704 1.207570 TGAACACACACGTACACCCTT 59.792 47.619 0.00 0.00 0.00 3.95
667 705 0.825410 TGAACACACACGTACACCCT 59.175 50.000 0.00 0.00 0.00 4.34
668 706 1.873698 ATGAACACACACGTACACCC 58.126 50.000 0.00 0.00 0.00 4.61
669 707 3.904571 TCTATGAACACACACGTACACC 58.095 45.455 0.00 0.00 0.00 4.16
670 708 5.893512 TTTCTATGAACACACACGTACAC 57.106 39.130 0.00 0.00 0.00 2.90
671 709 7.329962 CCTTATTTCTATGAACACACACGTACA 59.670 37.037 0.00 0.00 0.00 2.90
672 710 7.201496 CCCTTATTTCTATGAACACACACGTAC 60.201 40.741 0.00 0.00 0.00 3.67
673 711 6.814644 CCCTTATTTCTATGAACACACACGTA 59.185 38.462 0.00 0.00 0.00 3.57
674 712 5.642063 CCCTTATTTCTATGAACACACACGT 59.358 40.000 0.00 0.00 0.00 4.49
675 713 5.642063 ACCCTTATTTCTATGAACACACACG 59.358 40.000 0.00 0.00 0.00 4.49
676 714 8.612619 CATACCCTTATTTCTATGAACACACAC 58.387 37.037 0.00 0.00 0.00 3.82
677 715 7.282224 GCATACCCTTATTTCTATGAACACACA 59.718 37.037 0.00 0.00 0.00 3.72
678 716 7.518370 CGCATACCCTTATTTCTATGAACACAC 60.518 40.741 0.00 0.00 0.00 3.82
679 717 6.481976 CGCATACCCTTATTTCTATGAACACA 59.518 38.462 0.00 0.00 0.00 3.72
680 718 6.565999 GCGCATACCCTTATTTCTATGAACAC 60.566 42.308 0.30 0.00 0.00 3.32
681 719 5.468746 GCGCATACCCTTATTTCTATGAACA 59.531 40.000 0.30 0.00 0.00 3.18
682 720 5.468746 TGCGCATACCCTTATTTCTATGAAC 59.531 40.000 5.66 0.00 0.00 3.18
683 721 5.616270 TGCGCATACCCTTATTTCTATGAA 58.384 37.500 5.66 0.00 0.00 2.57
684 722 5.222079 TGCGCATACCCTTATTTCTATGA 57.778 39.130 5.66 0.00 0.00 2.15
685 723 7.792374 ATATGCGCATACCCTTATTTCTATG 57.208 36.000 31.17 0.00 0.00 2.23
694 732 9.627123 AACATTTATATATATGCGCATACCCTT 57.373 29.630 31.17 18.20 0.00 3.95
695 733 9.056005 CAACATTTATATATATGCGCATACCCT 57.944 33.333 31.17 18.56 0.00 4.34
696 734 8.836413 ACAACATTTATATATATGCGCATACCC 58.164 33.333 31.17 0.00 0.00 3.69
697 735 9.650371 CACAACATTTATATATATGCGCATACC 57.350 33.333 31.17 0.00 0.00 2.73
700 738 9.166173 AGACACAACATTTATATATATGCGCAT 57.834 29.630 28.23 28.23 0.00 4.73
701 739 8.442384 CAGACACAACATTTATATATATGCGCA 58.558 33.333 14.96 14.96 0.00 6.09
702 740 8.443160 ACAGACACAACATTTATATATATGCGC 58.557 33.333 11.72 0.00 0.00 6.09
712 750 8.845227 TGAACACATTACAGACACAACATTTAT 58.155 29.630 0.00 0.00 0.00 1.40
713 751 8.214721 TGAACACATTACAGACACAACATTTA 57.785 30.769 0.00 0.00 0.00 1.40
714 752 7.066887 TCTGAACACATTACAGACACAACATTT 59.933 33.333 0.00 0.00 36.04 2.32
715 753 6.542005 TCTGAACACATTACAGACACAACATT 59.458 34.615 0.00 0.00 36.04 2.71
716 754 6.054941 TCTGAACACATTACAGACACAACAT 58.945 36.000 0.00 0.00 36.04 2.71
717 755 5.423886 TCTGAACACATTACAGACACAACA 58.576 37.500 0.00 0.00 36.04 3.33
718 756 5.984233 TCTGAACACATTACAGACACAAC 57.016 39.130 0.00 0.00 36.04 3.32
719 757 6.993786 TTTCTGAACACATTACAGACACAA 57.006 33.333 0.00 0.00 39.80 3.33
720 758 8.669946 TTATTTCTGAACACATTACAGACACA 57.330 30.769 0.00 0.00 39.80 3.72
774 812 3.029320 TCAACGCCGCTAGAGTTTTTA 57.971 42.857 0.00 0.00 0.00 1.52
888 929 1.134175 AGCAAATTAAATCCGCGGTGG 59.866 47.619 27.15 1.67 40.09 4.61
923 972 4.456253 CCACGGACGAGTCGACGG 62.456 72.222 27.66 23.29 35.89 4.79
927 976 1.154263 GAAGACCACGGACGAGTCG 60.154 63.158 11.85 11.85 35.65 4.18
959 1008 1.383386 GGAAGGGGAGGAGGAGGAC 60.383 68.421 0.00 0.00 0.00 3.85
974 1023 3.707189 GGAGAGGGGGAGGGGGAA 61.707 72.222 0.00 0.00 0.00 3.97
985 1034 2.061061 AGCCATTGGATTAGGGAGAGG 58.939 52.381 6.95 0.00 0.00 3.69
986 1035 2.813354 GCAGCCATTGGATTAGGGAGAG 60.813 54.545 6.95 0.00 0.00 3.20
987 1036 1.143684 GCAGCCATTGGATTAGGGAGA 59.856 52.381 6.95 0.00 0.00 3.71
988 1037 1.144503 AGCAGCCATTGGATTAGGGAG 59.855 52.381 6.95 0.00 0.00 4.30
989 1038 1.133699 CAGCAGCCATTGGATTAGGGA 60.134 52.381 6.95 0.00 0.00 4.20
990 1039 1.325355 CAGCAGCCATTGGATTAGGG 58.675 55.000 6.95 0.00 0.00 3.53
991 1040 0.672342 GCAGCAGCCATTGGATTAGG 59.328 55.000 6.95 0.00 33.58 2.69
992 1041 1.337071 CAGCAGCAGCCATTGGATTAG 59.663 52.381 6.95 0.00 43.56 1.73
1260 1309 2.202703 AGGCATAACGCGGACGAC 60.203 61.111 12.47 0.00 43.93 4.34
1263 1312 2.813179 CTGCAGGCATAACGCGGAC 61.813 63.158 12.47 0.00 43.84 4.79
1403 1453 4.157472 TGCATGAATCAAGCAAACGGAATA 59.843 37.500 10.92 0.00 35.14 1.75
1407 1457 2.256174 CTGCATGAATCAAGCAAACGG 58.744 47.619 14.19 0.00 37.62 4.44
1462 1512 3.319122 AGCTGAAAACGCAGGAGAAAAAT 59.681 39.130 0.00 0.00 36.41 1.82
1555 1605 1.228245 TGAGCACCTGGAAGCCAAC 60.228 57.895 0.00 0.27 30.80 3.77
1617 1673 2.411748 TGATCAAGAAGCTTACGCGTTG 59.588 45.455 20.78 12.65 42.32 4.10
1920 1995 2.736826 GCAGAGGCCAGGGTACTCC 61.737 68.421 5.01 0.00 31.70 3.85
1922 1997 1.307343 ATGCAGAGGCCAGGGTACT 60.307 57.895 5.01 0.00 40.13 2.73
1924 1999 0.913934 TTGATGCAGAGGCCAGGGTA 60.914 55.000 5.01 0.00 40.13 3.69
1929 2004 1.913951 ATCGGTTGATGCAGAGGCCA 61.914 55.000 5.01 0.00 40.13 5.36
1937 2012 0.925466 GCATGCAAATCGGTTGATGC 59.075 50.000 14.21 14.60 40.37 3.91
1944 2019 1.454479 AGAGGGGCATGCAAATCGG 60.454 57.895 21.36 0.00 0.00 4.18
1988 2064 4.379186 GGTTCAGATCAATTCACAGCTGTG 60.379 45.833 36.07 36.07 46.91 3.66
2061 2138 4.466015 TCGGCATGAATGGTGAGCTATATA 59.534 41.667 0.00 0.00 0.00 0.86
2083 2160 2.611225 AGATGAAGGCGAGACCATTC 57.389 50.000 0.00 0.00 43.14 2.67
2178 2256 3.550842 GGCAAAACTGCTTGTTAGTCCAG 60.551 47.826 0.00 0.00 38.03 3.86
2269 2349 3.499338 AGAACACCATGCCAAATCTGAA 58.501 40.909 0.00 0.00 0.00 3.02
2317 2397 4.553330 TCAAGTCCCTTTATCACCTGAC 57.447 45.455 0.00 0.00 0.00 3.51
2417 2497 3.146066 TCGGCATTGCTCTGTTAAACTT 58.854 40.909 8.82 0.00 0.00 2.66
2427 2507 1.713932 GTTTCGTTTTCGGCATTGCTC 59.286 47.619 8.82 0.00 44.25 4.26
2525 2611 6.849085 ATCATCACTATCCTGTCCAGATAC 57.151 41.667 0.00 0.00 0.00 2.24
2705 2791 3.646162 TCTTCAGTTGCCTCCTGTAAAGA 59.354 43.478 0.00 0.00 0.00 2.52
2740 2826 7.936847 ACTCTACTCACATGGTAATTCACAAAA 59.063 33.333 0.00 0.00 0.00 2.44
2758 2844 5.614887 GCCGAAAACAATTGTCACTCTACTC 60.615 44.000 12.39 0.00 0.00 2.59
2759 2845 4.213482 GCCGAAAACAATTGTCACTCTACT 59.787 41.667 12.39 0.00 0.00 2.57
2833 2919 5.359576 GGCTACATTATTCCATTCACAACCA 59.640 40.000 0.00 0.00 0.00 3.67
2895 2981 3.505386 TCCACATAAAACACTGGGCAAT 58.495 40.909 0.00 0.00 0.00 3.56
2911 2997 4.525874 TGAAATGCACACCAAATATCCACA 59.474 37.500 0.00 0.00 0.00 4.17
2917 3003 5.243507 ACATGACTGAAATGCACACCAAATA 59.756 36.000 0.00 0.00 0.00 1.40
2928 3014 5.557388 CGAATCTGACACATGACTGAAATG 58.443 41.667 0.00 0.00 0.00 2.32
2929 3015 4.093998 GCGAATCTGACACATGACTGAAAT 59.906 41.667 0.00 0.00 0.00 2.17
2937 3023 1.662629 GGTGAGCGAATCTGACACATG 59.337 52.381 0.00 0.00 29.89 3.21
2939 3025 0.678950 TGGTGAGCGAATCTGACACA 59.321 50.000 0.00 0.00 29.89 3.72
3022 3108 4.901250 AGGAAAAACACAGACCCATGAATT 59.099 37.500 0.00 0.00 0.00 2.17
3024 3110 3.909732 AGGAAAAACACAGACCCATGAA 58.090 40.909 0.00 0.00 0.00 2.57
3025 3111 3.593442 AGGAAAAACACAGACCCATGA 57.407 42.857 0.00 0.00 0.00 3.07
3028 3114 4.528596 TCAAAAAGGAAAAACACAGACCCA 59.471 37.500 0.00 0.00 0.00 4.51
3072 3158 1.613437 GTAACCACATGCCTTGCAAGT 59.387 47.619 24.35 3.84 43.62 3.16
3081 3167 0.519961 GGTTCCACGTAACCACATGC 59.480 55.000 14.14 0.00 46.85 4.06
3096 3182 3.506067 CACATGTTTTGGGACTAGGGTTC 59.494 47.826 0.00 0.00 0.00 3.62
3124 3210 7.111139 CGTTTATACTAGTTGAGTTGATTGCG 58.889 38.462 0.00 0.00 39.81 4.85
3130 3216 9.275231 CAGAGTACGTTTATACTAGTTGAGTTG 57.725 37.037 0.00 0.00 39.81 3.16
3134 3220 8.239314 CCAACAGAGTACGTTTATACTAGTTGA 58.761 37.037 22.66 0.00 44.37 3.18
3141 3227 6.089954 GGTTCACCAACAGAGTACGTTTATAC 59.910 42.308 0.00 0.00 33.70 1.47
3143 3229 4.992951 GGTTCACCAACAGAGTACGTTTAT 59.007 41.667 0.00 0.00 33.70 1.40
3144 3230 4.099881 AGGTTCACCAACAGAGTACGTTTA 59.900 41.667 0.00 0.00 38.89 2.01
3145 3231 3.118519 AGGTTCACCAACAGAGTACGTTT 60.119 43.478 0.00 0.00 38.89 3.60
3262 3348 4.216257 GCAAGTTTTAATGTCCTCTCTGCA 59.784 41.667 0.00 0.00 0.00 4.41
3331 3417 9.868277 ATGTACAGATTGTTTTCTTTGTTTTGA 57.132 25.926 0.33 0.00 0.00 2.69
3388 3474 4.479619 GTTTACAAAGGAAGATGCTGCTG 58.520 43.478 0.00 0.00 0.00 4.41
3418 3504 3.121092 CGATGCGCTGTCAATCTGATTAG 60.121 47.826 9.73 0.00 0.00 1.73
3436 3522 3.062639 CAGATTCTTCGGGTTTGTCGATG 59.937 47.826 0.00 0.00 36.49 3.84
3516 3602 4.573607 TCATGCAGATTCTTCGGATTTGAG 59.426 41.667 0.00 0.00 0.00 3.02
3629 3715 1.070134 TCAAGGCTGCTCAAGTTACGT 59.930 47.619 0.00 0.00 0.00 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.