Multiple sequence alignment - TraesCS7A01G265800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G265800 chr7A 100.000 6005 0 0 1 6005 267435015 267429011 0.000000e+00 11090.0
1 TraesCS7A01G265800 chr7A 92.727 220 16 0 1793 2012 227064578 227064797 9.710000e-83 318.0
2 TraesCS7A01G265800 chr7A 90.526 95 5 4 2451 2544 227065145 227065236 8.170000e-24 122.0
3 TraesCS7A01G265800 chr7B 91.300 4276 226 52 796 5005 229868465 229872660 0.000000e+00 5701.0
4 TraesCS7A01G265800 chr7B 90.766 509 30 7 1 502 229838909 229839407 0.000000e+00 664.0
5 TraesCS7A01G265800 chr7B 90.000 220 22 0 1793 2012 300322564 300322783 9.850000e-73 285.0
6 TraesCS7A01G265800 chr7B 90.323 217 15 3 504 714 229868250 229868466 4.580000e-71 279.0
7 TraesCS7A01G265800 chr7B 92.135 178 14 0 5018 5195 153550563 153550386 9.990000e-63 252.0
8 TraesCS7A01G265800 chr7D 92.476 3921 192 44 962 4829 252556439 252560309 0.000000e+00 5511.0
9 TraesCS7A01G265800 chr7D 90.000 570 22 12 4 553 252553694 252554248 0.000000e+00 704.0
10 TraesCS7A01G265800 chr7D 77.823 487 105 2 5522 6005 80117719 80117233 1.270000e-76 298.0
11 TraesCS7A01G265800 chr7D 90.798 163 14 1 553 714 252554793 252554955 3.640000e-52 217.0
12 TraesCS7A01G265800 chr7D 90.511 137 7 6 796 931 252554954 252555085 6.190000e-40 176.0
13 TraesCS7A01G265800 chr7D 93.162 117 8 0 5079 5195 489157398 489157282 8.000000e-39 172.0
14 TraesCS7A01G265800 chr5D 89.317 805 55 13 5201 6005 440744276 440745049 0.000000e+00 981.0
15 TraesCS7A01G265800 chr5D 79.545 484 71 14 5201 5683 230502419 230501963 2.700000e-83 320.0
16 TraesCS7A01G265800 chr5D 91.860 86 3 4 2451 2535 398037009 398037091 3.800000e-22 117.0
17 TraesCS7A01G265800 chr5D 86.364 88 10 1 713 800 367815198 367815283 1.780000e-15 95.3
18 TraesCS7A01G265800 chr5D 89.231 65 7 0 1817 1881 408301157 408301221 1.390000e-11 82.4
19 TraesCS7A01G265800 chr5A 88.600 807 63 13 5201 6005 552224322 552225101 0.000000e+00 953.0
20 TraesCS7A01G265800 chr5A 93.182 88 4 2 2457 2544 554116156 554116071 1.760000e-25 128.0
21 TraesCS7A01G265800 chr5A 88.235 85 10 0 713 797 524672275 524672191 1.060000e-17 102.0
22 TraesCS7A01G265800 chr5A 88.406 69 7 1 1814 1881 514093196 514093264 1.390000e-11 82.4
23 TraesCS7A01G265800 chr3B 86.741 807 81 12 5201 6005 242482855 242483637 0.000000e+00 874.0
24 TraesCS7A01G265800 chr3B 90.625 160 15 0 5014 5173 49412546 49412705 4.710000e-51 213.0
25 TraesCS7A01G265800 chr1A 91.186 624 52 2 2686 3309 406627343 406627963 0.000000e+00 845.0
26 TraesCS7A01G265800 chr1A 89.037 675 72 1 2686 3360 425075823 425075151 0.000000e+00 835.0
27 TraesCS7A01G265800 chr1A 86.667 90 12 0 712 801 12556266 12556177 3.830000e-17 100.0
28 TraesCS7A01G265800 chr1A 84.946 93 12 2 709 800 450560513 450560422 6.410000e-15 93.5
29 TraesCS7A01G265800 chr2A 86.829 615 57 5 5202 5816 743584581 743585171 0.000000e+00 665.0
30 TraesCS7A01G265800 chr6D 81.852 540 81 10 5472 6005 433164904 433165432 7.150000e-119 438.0
31 TraesCS7A01G265800 chr6D 86.667 90 11 1 708 797 448788056 448788144 1.380000e-16 99.0
32 TraesCS7A01G265800 chr2D 82.512 406 67 3 5603 6005 9379620 9379216 2.660000e-93 353.0
33 TraesCS7A01G265800 chr2D 96.067 178 7 0 5018 5195 393576587 393576764 2.120000e-74 291.0
34 TraesCS7A01G265800 chr2D 91.579 95 4 4 2451 2544 420721722 420721813 1.760000e-25 128.0
35 TraesCS7A01G265800 chr4D 79.435 496 93 8 5515 6005 57691701 57691210 5.760000e-90 342.0
36 TraesCS7A01G265800 chr3D 82.873 362 57 2 5646 6005 152680303 152680661 2.700000e-83 320.0
37 TraesCS7A01G265800 chr1B 76.779 534 113 9 5478 6005 629758462 629758990 7.610000e-74 289.0
38 TraesCS7A01G265800 chr1B 96.154 78 2 1 2467 2544 200415432 200415508 6.320000e-25 126.0
39 TraesCS7A01G265800 chr1B 85.556 90 12 1 709 798 4153908 4153820 6.410000e-15 93.5
40 TraesCS7A01G265800 chr1D 94.382 178 10 0 5018 5195 485255154 485255331 2.130000e-69 274.0
41 TraesCS7A01G265800 chr5B 93.820 178 11 0 5018 5195 123693304 123693481 9.920000e-68 268.0
42 TraesCS7A01G265800 chr5B 88.235 85 10 0 713 797 588574289 588574205 1.060000e-17 102.0
43 TraesCS7A01G265800 chr6B 93.258 178 12 0 5018 5195 607329949 607330126 4.620000e-66 263.0
44 TraesCS7A01G265800 chr6B 92.045 88 5 2 2457 2544 210083948 210083863 8.170000e-24 122.0
45 TraesCS7A01G265800 chr3A 92.500 160 11 1 5014 5173 38339162 38339320 1.680000e-55 228.0
46 TraesCS7A01G265800 chr3A 88.235 85 10 0 713 797 9014549 9014465 1.060000e-17 102.0
47 TraesCS7A01G265800 chr6A 91.860 86 3 4 2451 2535 211315849 211315931 3.800000e-22 117.0
48 TraesCS7A01G265800 chr4A 89.535 86 9 0 712 797 664446278 664446193 6.360000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G265800 chr7A 267429011 267435015 6004 True 11090 11090 100.00000 1 6005 1 chr7A.!!$R1 6004
1 TraesCS7A01G265800 chr7A 227064578 227065236 658 False 220 318 91.62650 1793 2544 2 chr7A.!!$F1 751
2 TraesCS7A01G265800 chr7B 229868250 229872660 4410 False 2990 5701 90.81150 504 5005 2 chr7B.!!$F3 4501
3 TraesCS7A01G265800 chr7D 252553694 252560309 6615 False 1652 5511 90.94625 4 4829 4 chr7D.!!$F1 4825
4 TraesCS7A01G265800 chr5D 440744276 440745049 773 False 981 981 89.31700 5201 6005 1 chr5D.!!$F4 804
5 TraesCS7A01G265800 chr5A 552224322 552225101 779 False 953 953 88.60000 5201 6005 1 chr5A.!!$F2 804
6 TraesCS7A01G265800 chr3B 242482855 242483637 782 False 874 874 86.74100 5201 6005 1 chr3B.!!$F2 804
7 TraesCS7A01G265800 chr1A 406627343 406627963 620 False 845 845 91.18600 2686 3309 1 chr1A.!!$F1 623
8 TraesCS7A01G265800 chr1A 425075151 425075823 672 True 835 835 89.03700 2686 3360 1 chr1A.!!$R2 674
9 TraesCS7A01G265800 chr2A 743584581 743585171 590 False 665 665 86.82900 5202 5816 1 chr2A.!!$F1 614
10 TraesCS7A01G265800 chr6D 433164904 433165432 528 False 438 438 81.85200 5472 6005 1 chr6D.!!$F1 533
11 TraesCS7A01G265800 chr1B 629758462 629758990 528 False 289 289 76.77900 5478 6005 1 chr1B.!!$F2 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 520 0.107081 TGTTACGTTGACAGGTGGGG 59.893 55.000 0.00 0.00 0.00 4.96 F
1241 3143 0.038310 CTGGACCTTGGTTCCCTTCC 59.962 60.000 0.00 0.00 31.33 3.46 F
1576 3488 0.039035 TGTTCATGGCCCAAGGGTAC 59.961 55.000 7.05 1.07 37.65 3.34 F
1820 3781 0.897621 GGTTCATTCTTGGGCTTGGG 59.102 55.000 0.00 0.00 0.00 4.12 F
2932 4933 1.595794 ACAAACTCTGTAAACGCCACG 59.404 47.619 0.00 0.00 36.10 4.94 F
3848 5866 0.109735 GTAACTGCAAAAGAGCCGGC 60.110 55.000 21.89 21.89 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1358 3267 0.034756 ACCAATTTCGCCCCAAAAGC 59.965 50.000 0.00 0.0 0.00 3.51 R
2932 4933 1.005748 GGCAGCAGTTTCCAAAGCC 60.006 57.895 0.00 0.0 0.00 4.35 R
3360 5361 3.068165 CAGTAACACTGTGACAGGACAGA 59.932 47.826 17.92 0.0 45.39 3.41 R
3674 5691 2.439409 TCTGCAAGGAATCACACATGG 58.561 47.619 0.00 0.0 0.00 3.66 R
4890 6945 0.249120 TGTTCGCATCCCACGAGAAT 59.751 50.000 0.00 0.0 41.18 2.40 R
5707 7763 0.033090 GGACGGAAGAACCAAGACGT 59.967 55.000 0.00 0.0 38.90 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.443283 CTGCTAAAATACAGATACTCATTTTGC 57.557 33.333 0.00 0.00 35.90 3.68
56 57 7.754851 AAATTTGTCAATAAAGTACCGTCCT 57.245 32.000 0.00 0.00 0.00 3.85
83 84 6.597832 ACACTTTCTAGTCATTACTGCTCT 57.402 37.500 0.00 0.00 36.36 4.09
91 92 9.944376 TTCTAGTCATTACTGCTCTTTTTGTAT 57.056 29.630 0.00 0.00 36.36 2.29
95 96 8.725148 AGTCATTACTGCTCTTTTTGTATTCAG 58.275 33.333 0.00 0.00 33.57 3.02
96 97 7.965107 GTCATTACTGCTCTTTTTGTATTCAGG 59.035 37.037 0.00 0.00 0.00 3.86
159 174 5.237344 CAGTTACCCTGAACTTGAAAGTGAG 59.763 44.000 0.00 0.00 44.49 3.51
161 176 1.882623 CCCTGAACTTGAAAGTGAGGC 59.117 52.381 12.91 0.00 39.66 4.70
180 195 0.965866 CGAGGCCAGAGGACACACTA 60.966 60.000 5.01 0.00 29.21 2.74
192 208 4.302067 AGGACACACTATCAAGGATCCAT 58.698 43.478 15.82 0.00 0.00 3.41
230 246 3.117851 TGTGTATTGTTTCCCACTCCACA 60.118 43.478 0.00 0.00 0.00 4.17
231 247 4.079253 GTGTATTGTTTCCCACTCCACAT 58.921 43.478 0.00 0.00 0.00 3.21
260 276 9.607988 AATTGTATTAAGATGGTATTCGTCACA 57.392 29.630 0.00 0.00 33.89 3.58
261 277 9.607988 ATTGTATTAAGATGGTATTCGTCACAA 57.392 29.630 0.00 0.00 33.89 3.33
262 278 9.607988 TTGTATTAAGATGGTATTCGTCACAAT 57.392 29.630 0.00 0.00 33.89 2.71
300 316 6.980416 ACTAGGAAATCCATCTACCAGTAC 57.020 41.667 1.67 0.00 38.89 2.73
301 317 6.684538 ACTAGGAAATCCATCTACCAGTACT 58.315 40.000 1.67 0.00 38.89 2.73
302 318 7.823635 ACTAGGAAATCCATCTACCAGTACTA 58.176 38.462 0.00 0.00 38.89 1.82
349 365 4.541482 CGCCCACATGCATGCGTC 62.541 66.667 26.53 11.94 41.95 5.19
467 488 7.020602 CACATACGTGTATGCATTCAAAGAAA 58.979 34.615 17.62 0.00 45.06 2.52
499 520 0.107081 TGTTACGTTGACAGGTGGGG 59.893 55.000 0.00 0.00 0.00 4.96
545 566 2.616842 CGTGTAAGGTATGGCCATTTCC 59.383 50.000 26.37 24.76 40.61 3.13
585 1151 4.215908 AGGAGAACTGTTTTCCTTTTCCC 58.784 43.478 22.90 1.46 38.13 3.97
603 1175 4.386867 TCCCTTTTACACTCTGATAGCG 57.613 45.455 0.00 0.00 0.00 4.26
618 1190 3.062099 TGATAGCGAGTGTTTTTCGATGC 59.938 43.478 0.00 0.00 40.36 3.91
656 1228 5.365025 CACTGGATTCTTCAGATAGGGAGAA 59.635 44.000 0.00 0.00 36.22 2.87
712 1284 1.283029 ACTTGACTATGGCACCATGCT 59.717 47.619 12.54 0.00 44.28 3.79
713 1285 2.505407 ACTTGACTATGGCACCATGCTA 59.495 45.455 12.54 0.00 44.28 3.49
714 1286 2.620251 TGACTATGGCACCATGCTAC 57.380 50.000 12.54 2.47 44.28 3.58
715 1287 2.118679 TGACTATGGCACCATGCTACT 58.881 47.619 12.54 0.00 44.28 2.57
716 1288 2.103094 TGACTATGGCACCATGCTACTC 59.897 50.000 12.54 0.79 44.28 2.59
717 1289 2.366916 GACTATGGCACCATGCTACTCT 59.633 50.000 12.54 0.00 44.28 3.24
718 1290 2.366916 ACTATGGCACCATGCTACTCTC 59.633 50.000 12.54 0.00 44.28 3.20
719 1291 1.504912 ATGGCACCATGCTACTCTCT 58.495 50.000 0.16 0.00 44.28 3.10
720 1292 0.826715 TGGCACCATGCTACTCTCTC 59.173 55.000 0.13 0.00 44.28 3.20
721 1293 1.118838 GGCACCATGCTACTCTCTCT 58.881 55.000 0.13 0.00 44.28 3.10
722 1294 1.202510 GGCACCATGCTACTCTCTCTG 60.203 57.143 0.13 0.00 44.28 3.35
723 1295 1.480137 GCACCATGCTACTCTCTCTGT 59.520 52.381 0.00 0.00 40.96 3.41
724 1296 2.690497 GCACCATGCTACTCTCTCTGTA 59.310 50.000 0.00 0.00 40.96 2.74
725 1297 3.131223 GCACCATGCTACTCTCTCTGTAA 59.869 47.826 0.00 0.00 40.96 2.41
726 1298 4.382040 GCACCATGCTACTCTCTCTGTAAA 60.382 45.833 0.00 0.00 40.96 2.01
727 1299 5.347342 CACCATGCTACTCTCTCTGTAAAG 58.653 45.833 0.00 0.00 0.00 1.85
728 1300 5.126222 CACCATGCTACTCTCTCTGTAAAGA 59.874 44.000 0.00 0.00 0.00 2.52
729 1301 5.717178 ACCATGCTACTCTCTCTGTAAAGAA 59.283 40.000 0.00 0.00 0.00 2.52
730 1302 6.211584 ACCATGCTACTCTCTCTGTAAAGAAA 59.788 38.462 0.00 0.00 0.00 2.52
731 1303 7.093112 ACCATGCTACTCTCTCTGTAAAGAAAT 60.093 37.037 0.00 0.00 0.00 2.17
732 1304 8.417106 CCATGCTACTCTCTCTGTAAAGAAATA 58.583 37.037 0.00 0.00 0.00 1.40
733 1305 9.979578 CATGCTACTCTCTCTGTAAAGAAATAT 57.020 33.333 0.00 0.00 0.00 1.28
740 1312 9.393249 CTCTCTCTGTAAAGAAATATAAGAGCG 57.607 37.037 0.00 0.00 0.00 5.03
741 1313 8.904834 TCTCTCTGTAAAGAAATATAAGAGCGT 58.095 33.333 0.00 0.00 0.00 5.07
742 1314 9.522804 CTCTCTGTAAAGAAATATAAGAGCGTT 57.477 33.333 0.00 0.00 0.00 4.84
743 1315 9.871238 TCTCTGTAAAGAAATATAAGAGCGTTT 57.129 29.630 0.00 0.00 0.00 3.60
815 1387 6.377996 TGGAGTAATTGCAAATGCTTATGACT 59.622 34.615 1.71 8.48 42.66 3.41
851 1425 9.855021 TTTGAGCCTTTTATTTTCTAACATAGC 57.145 29.630 0.00 0.00 0.00 2.97
852 1426 7.693952 TGAGCCTTTTATTTTCTAACATAGCG 58.306 34.615 0.00 0.00 0.00 4.26
855 1429 8.610035 AGCCTTTTATTTTCTAACATAGCGTAC 58.390 33.333 0.00 0.00 0.00 3.67
859 1433 9.656040 TTTTATTTTCTAACATAGCGTACTCCA 57.344 29.630 0.00 0.00 0.00 3.86
860 1434 8.867112 TTATTTTCTAACATAGCGTACTCCAG 57.133 34.615 0.00 0.00 0.00 3.86
895 1469 6.434596 TCAGTTTGAACGACAATTATTGTGG 58.565 36.000 15.83 16.20 45.52 4.17
939 1513 7.279313 ACAATACCTTACCGTTATTGTGATCAC 59.721 37.037 19.27 19.27 39.16 3.06
943 1517 7.562135 ACCTTACCGTTATTGTGATCACTTAT 58.438 34.615 25.55 19.67 0.00 1.73
944 1518 8.044908 ACCTTACCGTTATTGTGATCACTTATT 58.955 33.333 25.55 10.70 0.00 1.40
945 1519 9.537192 CCTTACCGTTATTGTGATCACTTATTA 57.463 33.333 25.55 10.87 0.00 0.98
1071 2973 4.798387 CCAACTTGCGCAGTTAATTATTCC 59.202 41.667 19.88 0.00 44.60 3.01
1081 2983 6.697019 CGCAGTTAATTATTCCCTGGAAATTG 59.303 38.462 2.15 0.00 37.69 2.32
1112 3014 1.845809 CGTGCTGTCTTCACTTGGGC 61.846 60.000 0.00 0.00 32.54 5.36
1152 3054 2.650322 GTGGTGAACCCTGAAAGTGAA 58.350 47.619 0.00 0.00 34.29 3.18
1168 3070 5.396057 AAGTGAAGCTCTAGGATAGGAGA 57.604 43.478 0.00 0.00 39.78 3.71
1170 3072 5.137551 AGTGAAGCTCTAGGATAGGAGAAC 58.862 45.833 0.00 0.00 39.78 3.01
1206 3108 7.929941 AACAAGAAGAATAAAAGCTAGGAGG 57.070 36.000 0.00 0.00 0.00 4.30
1212 3114 1.492764 TAAAAGCTAGGAGGGGTCCG 58.507 55.000 0.00 0.00 34.28 4.79
1241 3143 0.038310 CTGGACCTTGGTTCCCTTCC 59.962 60.000 0.00 0.00 31.33 3.46
1242 3144 1.383019 GGACCTTGGTTCCCTTCCC 59.617 63.158 0.00 0.00 0.00 3.97
1264 3168 1.549203 TTCTTGGCTCATTGGAAGGC 58.451 50.000 0.00 0.00 0.00 4.35
1286 3190 2.276740 CCTGCCATCTGGGTTCCC 59.723 66.667 0.12 0.12 39.65 3.97
1325 3229 1.176619 CGTGGGGTTTTGGGAACTCC 61.177 60.000 0.84 0.84 41.21 3.85
1358 3267 3.581755 CATCATTTCTTTGGTGCACTGG 58.418 45.455 17.98 4.79 0.00 4.00
1385 3294 2.300723 GGGGCGAAATTGGTAAGGTTTT 59.699 45.455 0.00 0.00 0.00 2.43
1390 3299 7.143340 GGGCGAAATTGGTAAGGTTTTATATC 58.857 38.462 0.00 0.00 0.00 1.63
1408 3318 3.949842 ATCTTTCCCTTTTTCTGCTGC 57.050 42.857 0.00 0.00 0.00 5.25
1436 3348 7.069331 TCAGTTTGTTGGTTTGAATTCCATAGT 59.931 33.333 2.27 0.00 33.50 2.12
1437 3349 7.382218 CAGTTTGTTGGTTTGAATTCCATAGTC 59.618 37.037 2.27 0.00 33.50 2.59
1492 3404 3.134574 TGTTGTTTGTTAGGATCGGCT 57.865 42.857 0.00 0.00 0.00 5.52
1576 3488 0.039035 TGTTCATGGCCCAAGGGTAC 59.961 55.000 7.05 1.07 37.65 3.34
1614 3526 1.807242 GCGCTTGCAACGGTTTTGTC 61.807 55.000 18.46 2.08 38.92 3.18
1642 3556 1.816224 GCCTTGCTTCCCGTAAATCAA 59.184 47.619 0.00 0.00 0.00 2.57
1645 3559 3.501950 CTTGCTTCCCGTAAATCAAAGC 58.498 45.455 0.00 0.00 42.02 3.51
1648 3563 2.732282 GCTTCCCGTAAATCAAAGCAGC 60.732 50.000 0.00 0.00 41.46 5.25
1682 3597 1.931906 TCTGCGATCACAATCTCAGC 58.068 50.000 0.00 0.00 42.14 4.26
1686 3601 1.202510 GCGATCACAATCTCAGCTCCT 60.203 52.381 0.00 0.00 0.00 3.69
1698 3613 4.511527 TCTCAGCTCCTTAGAAATTGCAG 58.488 43.478 0.00 0.00 0.00 4.41
1701 3616 5.503927 TCAGCTCCTTAGAAATTGCAGATT 58.496 37.500 0.00 0.00 0.00 2.40
1705 3620 5.825151 GCTCCTTAGAAATTGCAGATTAGGT 59.175 40.000 0.00 0.00 0.00 3.08
1714 3629 2.436417 TGCAGATTAGGTGGCTTGTTC 58.564 47.619 0.00 0.00 0.00 3.18
1716 3631 2.680339 GCAGATTAGGTGGCTTGTTCTC 59.320 50.000 0.00 0.00 0.00 2.87
1767 3728 1.427753 CAAGGGGTTAAGAACAGGGGT 59.572 52.381 0.00 0.00 0.00 4.95
1800 3761 1.305046 AATCCCTCCGGTCACGTCT 60.305 57.895 0.00 0.00 38.78 4.18
1801 3762 1.605058 AATCCCTCCGGTCACGTCTG 61.605 60.000 0.00 0.00 38.78 3.51
1805 3766 1.080705 CTCCGGTCACGTCTGGTTC 60.081 63.158 0.00 0.00 38.78 3.62
1820 3781 0.897621 GGTTCATTCTTGGGCTTGGG 59.102 55.000 0.00 0.00 0.00 4.12
1971 3932 2.045926 GCCGGCAGTGTCTCCAAT 60.046 61.111 24.80 0.00 0.00 3.16
2101 4062 4.148825 AGGTGGTGCGCGAGATCC 62.149 66.667 12.10 6.31 0.00 3.36
2157 4118 2.029666 AGCAACAGCTTCGACGCT 59.970 55.556 11.12 11.12 41.90 5.07
2269 4230 6.153340 TCCAAATCCTGTGAAATGATTCCTTC 59.847 38.462 0.00 0.00 34.49 3.46
2277 4238 5.409520 TGTGAAATGATTCCTTCGAAGTCTG 59.590 40.000 23.03 8.85 34.49 3.51
2484 4480 4.033358 GTCTGAAACGAATGCATACCTGAG 59.967 45.833 0.00 0.00 0.00 3.35
2554 4553 3.996480 AGTTGAGTTTCTCTGTAGCACC 58.004 45.455 0.00 0.00 0.00 5.01
2585 4584 6.391649 TCCTAATTTATGAGGGCTAGGGAAAA 59.608 38.462 0.00 0.00 33.27 2.29
2698 4699 7.940850 AGTTAGATCTTATCTCACTCTGCTTC 58.059 38.462 0.00 0.00 39.05 3.86
2770 4771 5.690409 GCGGAGATCGAATTACAGTCATAAA 59.310 40.000 0.00 0.00 42.43 1.40
2787 4788 8.774586 CAGTCATAAACCATAGCTGTAATTACC 58.225 37.037 13.01 0.00 0.00 2.85
2843 4844 9.903682 CCAAAATATATGTGGCTTATTCTCTTG 57.096 33.333 3.38 0.00 0.00 3.02
2861 4862 7.822161 TCTCTTGTTCCATTTCTTGATTTCA 57.178 32.000 0.00 0.00 0.00 2.69
2869 4870 8.514594 GTTCCATTTCTTGATTTCACAGATGTA 58.485 33.333 0.00 0.00 0.00 2.29
2932 4933 1.595794 ACAAACTCTGTAAACGCCACG 59.404 47.619 0.00 0.00 36.10 4.94
3366 5367 9.455847 GTTTATCAATCATTTGCTATTCTGTCC 57.544 33.333 0.00 0.00 32.61 4.02
3368 5369 6.688637 TCAATCATTTGCTATTCTGTCCTG 57.311 37.500 0.00 0.00 32.61 3.86
3369 5370 6.182627 TCAATCATTTGCTATTCTGTCCTGT 58.817 36.000 0.00 0.00 32.61 4.00
3370 5371 6.317140 TCAATCATTTGCTATTCTGTCCTGTC 59.683 38.462 0.00 0.00 32.61 3.51
3371 5372 5.164620 TCATTTGCTATTCTGTCCTGTCA 57.835 39.130 0.00 0.00 0.00 3.58
3372 5373 4.937620 TCATTTGCTATTCTGTCCTGTCAC 59.062 41.667 0.00 0.00 0.00 3.67
3373 5374 4.350368 TTTGCTATTCTGTCCTGTCACA 57.650 40.909 0.00 0.00 0.00 3.58
3374 5375 3.599730 TGCTATTCTGTCCTGTCACAG 57.400 47.619 0.00 0.00 44.61 3.66
3476 5490 8.313292 TCTGCTTAGGATTGCAATAATGTTTTT 58.687 29.630 12.97 0.00 38.81 1.94
3477 5491 8.477984 TGCTTAGGATTGCAATAATGTTTTTC 57.522 30.769 12.97 0.00 36.15 2.29
3571 5585 6.656270 TCACTGAAGCTGAACATAAACATGAT 59.344 34.615 0.00 0.00 0.00 2.45
3578 5592 7.275183 AGCTGAACATAAACATGATGTAGCTA 58.725 34.615 16.13 0.00 42.97 3.32
3579 5593 7.440556 AGCTGAACATAAACATGATGTAGCTAG 59.559 37.037 16.13 7.43 42.97 3.42
3620 5637 9.606631 AGGATTGATGTCTCTTAGTAATTGTTC 57.393 33.333 0.00 0.00 0.00 3.18
3664 5681 7.398829 TCCTATTCTGCAGTGGTTTTTGTATA 58.601 34.615 14.67 0.00 0.00 1.47
3674 5691 7.698130 GCAGTGGTTTTTGTATATTGACTGATC 59.302 37.037 0.00 0.00 31.88 2.92
3682 5700 7.790823 TTGTATATTGACTGATCCATGTGTG 57.209 36.000 0.00 0.00 0.00 3.82
3697 5715 4.825634 CCATGTGTGATTCCTTGCAGATAT 59.174 41.667 0.00 0.00 0.00 1.63
3747 5765 6.822667 ATTGATGTCAATGCAGTTAACAGA 57.177 33.333 8.61 0.00 44.22 3.41
3798 5816 6.122277 TGAGAAGATGAACAACCAAGAACTT 58.878 36.000 0.00 0.00 0.00 2.66
3848 5866 0.109735 GTAACTGCAAAAGAGCCGGC 60.110 55.000 21.89 21.89 0.00 6.13
4020 6038 1.227999 ACGCCATCAACTCCAACACG 61.228 55.000 0.00 0.00 0.00 4.49
4023 6041 1.156736 CCATCAACTCCAACACGGTC 58.843 55.000 0.00 0.00 35.57 4.79
4047 6065 3.490759 GTGCTCATCGCCACCGTG 61.491 66.667 0.00 0.00 38.05 4.94
4365 6383 3.640407 GGAGACTGGTGGCTGGCA 61.640 66.667 0.00 0.00 0.00 4.92
4520 6538 2.509336 GTCCATGCCGGTCGACTG 60.509 66.667 17.81 17.81 35.57 3.51
4570 6588 4.163552 CAAGAAGATGTACGCGTTGTAGA 58.836 43.478 20.78 0.00 32.51 2.59
4578 6596 0.172803 ACGCGTTGTAGATCAGGGTC 59.827 55.000 5.58 0.00 0.00 4.46
4585 6603 3.012934 TGTAGATCAGGGTCACGATCA 57.987 47.619 0.00 0.00 40.45 2.92
4720 6739 3.316308 AGGTACTTTTGCTGCTGAAACAG 59.684 43.478 0.00 0.00 36.36 3.16
4774 6796 1.204146 TGGAGATAAGGCACCTGGAC 58.796 55.000 0.00 0.00 0.00 4.02
4776 6798 0.470341 GAGATAAGGCACCTGGACCC 59.530 60.000 0.00 0.00 0.00 4.46
4782 6804 4.394712 GCACCTGGACCCGTCTGG 62.395 72.222 0.00 1.07 41.37 3.86
4822 6844 2.038033 GTGGTAGTCCTTGTAAGTGGCA 59.962 50.000 0.00 0.00 34.23 4.92
4844 6866 5.275881 GCATCTTGTACGCATAATTTTGCAC 60.276 40.000 18.95 11.67 42.91 4.57
4845 6867 4.399112 TCTTGTACGCATAATTTTGCACG 58.601 39.130 18.95 7.72 42.91 5.34
4855 6877 5.064198 GCATAATTTTGCACGAGTACCTACA 59.936 40.000 14.99 0.00 42.31 2.74
4884 6939 9.533831 TTTTAGAGAAGGGAGCAAAAGATTTAT 57.466 29.630 0.00 0.00 0.00 1.40
4889 6944 9.178758 GAGAAGGGAGCAAAAGATTTATAAGAA 57.821 33.333 0.00 0.00 0.00 2.52
4890 6945 9.533831 AGAAGGGAGCAAAAGATTTATAAGAAA 57.466 29.630 0.00 0.00 0.00 2.52
4931 6986 8.547967 AACATTCGACAAAGATAACACTACAT 57.452 30.769 0.00 0.00 0.00 2.29
4945 7000 3.844211 ACACTACATCCACACCTACCAAT 59.156 43.478 0.00 0.00 0.00 3.16
4948 7003 3.350219 ACATCCACACCTACCAATGTC 57.650 47.619 0.00 0.00 0.00 3.06
4953 7008 3.517901 TCCACACCTACCAATGTCCTAAG 59.482 47.826 0.00 0.00 0.00 2.18
4962 7017 7.092083 ACCTACCAATGTCCTAAGACTACTCTA 60.092 40.741 0.00 0.00 43.91 2.43
4971 7026 8.904834 TGTCCTAAGACTACTCTATCACAAATC 58.095 37.037 0.00 0.00 43.91 2.17
5005 7060 3.388024 TCCACACCACCTATAGCAATCTC 59.612 47.826 0.00 0.00 0.00 2.75
5006 7061 3.495100 CCACACCACCTATAGCAATCTCC 60.495 52.174 0.00 0.00 0.00 3.71
5007 7062 3.134623 CACACCACCTATAGCAATCTCCA 59.865 47.826 0.00 0.00 0.00 3.86
5008 7063 3.976654 ACACCACCTATAGCAATCTCCAT 59.023 43.478 0.00 0.00 0.00 3.41
5009 7064 4.040952 ACACCACCTATAGCAATCTCCATC 59.959 45.833 0.00 0.00 0.00 3.51
5010 7065 3.259374 ACCACCTATAGCAATCTCCATCG 59.741 47.826 0.00 0.00 0.00 3.84
5011 7066 3.257393 CACCTATAGCAATCTCCATCGC 58.743 50.000 0.00 0.00 0.00 4.58
5012 7067 2.094494 ACCTATAGCAATCTCCATCGCG 60.094 50.000 0.00 0.00 0.00 5.87
5013 7068 2.164422 CCTATAGCAATCTCCATCGCGA 59.836 50.000 13.09 13.09 0.00 5.87
5014 7069 3.181482 CCTATAGCAATCTCCATCGCGAT 60.181 47.826 17.62 17.62 0.00 4.58
5015 7070 2.070262 TAGCAATCTCCATCGCGATG 57.930 50.000 36.28 36.28 38.51 3.84
5016 7071 1.206072 GCAATCTCCATCGCGATGC 59.794 57.895 37.48 25.30 37.49 3.91
5027 7082 2.736236 GCGATGCGGCTGATCGAT 60.736 61.111 22.11 0.00 44.46 3.59
5028 7083 3.008240 GCGATGCGGCTGATCGATG 62.008 63.158 22.11 0.00 44.46 3.84
5029 7084 2.378084 CGATGCGGCTGATCGATGG 61.378 63.158 15.22 0.00 44.46 3.51
5030 7085 2.031516 GATGCGGCTGATCGATGGG 61.032 63.158 0.54 0.00 0.00 4.00
5031 7086 2.721971 GATGCGGCTGATCGATGGGT 62.722 60.000 0.54 0.00 0.00 4.51
5032 7087 2.203070 GCGGCTGATCGATGGGTT 60.203 61.111 0.54 0.00 0.00 4.11
5033 7088 1.819632 GCGGCTGATCGATGGGTTT 60.820 57.895 0.54 0.00 0.00 3.27
5034 7089 2.016961 CGGCTGATCGATGGGTTTG 58.983 57.895 0.54 0.00 0.00 2.93
5035 7090 0.461870 CGGCTGATCGATGGGTTTGA 60.462 55.000 0.54 0.00 0.00 2.69
5036 7091 1.750193 GGCTGATCGATGGGTTTGAA 58.250 50.000 0.54 0.00 0.00 2.69
5037 7092 2.091541 GGCTGATCGATGGGTTTGAAA 58.908 47.619 0.54 0.00 0.00 2.69
5038 7093 2.491693 GGCTGATCGATGGGTTTGAAAA 59.508 45.455 0.54 0.00 0.00 2.29
5039 7094 3.428045 GGCTGATCGATGGGTTTGAAAAG 60.428 47.826 0.54 0.00 0.00 2.27
5040 7095 3.440173 GCTGATCGATGGGTTTGAAAAGA 59.560 43.478 0.54 0.00 0.00 2.52
5041 7096 4.437930 GCTGATCGATGGGTTTGAAAAGAG 60.438 45.833 0.54 0.00 0.00 2.85
5042 7097 4.009675 TGATCGATGGGTTTGAAAAGAGG 58.990 43.478 0.54 0.00 0.00 3.69
5043 7098 3.780804 TCGATGGGTTTGAAAAGAGGA 57.219 42.857 0.00 0.00 0.00 3.71
5044 7099 4.301072 TCGATGGGTTTGAAAAGAGGAT 57.699 40.909 0.00 0.00 0.00 3.24
5045 7100 4.662278 TCGATGGGTTTGAAAAGAGGATT 58.338 39.130 0.00 0.00 0.00 3.01
5046 7101 4.700213 TCGATGGGTTTGAAAAGAGGATTC 59.300 41.667 0.00 0.00 0.00 2.52
5047 7102 4.437390 CGATGGGTTTGAAAAGAGGATTCG 60.437 45.833 0.00 0.00 0.00 3.34
5048 7103 3.827722 TGGGTTTGAAAAGAGGATTCGT 58.172 40.909 0.00 0.00 0.00 3.85
5049 7104 3.568007 TGGGTTTGAAAAGAGGATTCGTG 59.432 43.478 0.00 0.00 0.00 4.35
5050 7105 3.565516 GGTTTGAAAAGAGGATTCGTGC 58.434 45.455 0.00 0.00 0.00 5.34
5051 7106 3.565516 GTTTGAAAAGAGGATTCGTGCC 58.434 45.455 0.00 0.00 0.00 5.01
5052 7107 2.859165 TGAAAAGAGGATTCGTGCCT 57.141 45.000 0.00 0.00 38.81 4.75
5053 7108 3.140325 TGAAAAGAGGATTCGTGCCTT 57.860 42.857 0.00 0.00 35.44 4.35
5054 7109 3.074412 TGAAAAGAGGATTCGTGCCTTC 58.926 45.455 0.00 0.00 35.44 3.46
5055 7110 3.244561 TGAAAAGAGGATTCGTGCCTTCT 60.245 43.478 0.00 0.00 35.44 2.85
5056 7111 3.425162 AAAGAGGATTCGTGCCTTCTT 57.575 42.857 0.00 0.00 35.44 2.52
5057 7112 3.425162 AAGAGGATTCGTGCCTTCTTT 57.575 42.857 0.00 0.00 35.44 2.52
5058 7113 3.425162 AGAGGATTCGTGCCTTCTTTT 57.575 42.857 0.00 0.00 35.44 2.27
5059 7114 3.077359 AGAGGATTCGTGCCTTCTTTTG 58.923 45.455 0.00 0.00 35.44 2.44
5060 7115 3.074412 GAGGATTCGTGCCTTCTTTTGA 58.926 45.455 0.00 0.00 35.44 2.69
5061 7116 3.486383 AGGATTCGTGCCTTCTTTTGAA 58.514 40.909 0.00 0.00 36.89 2.69
5062 7117 3.888930 AGGATTCGTGCCTTCTTTTGAAA 59.111 39.130 0.00 0.00 38.07 2.69
5063 7118 4.340950 AGGATTCGTGCCTTCTTTTGAAAA 59.659 37.500 0.00 0.00 38.07 2.29
5064 7119 4.681483 GGATTCGTGCCTTCTTTTGAAAAG 59.319 41.667 11.30 11.30 38.07 2.27
5065 7120 3.708563 TCGTGCCTTCTTTTGAAAAGG 57.291 42.857 16.79 3.92 44.10 3.11
5066 7121 2.360801 TCGTGCCTTCTTTTGAAAAGGG 59.639 45.455 16.79 12.13 41.99 3.95
5067 7122 2.360801 CGTGCCTTCTTTTGAAAAGGGA 59.639 45.455 16.79 1.09 41.99 4.20
5069 7124 2.698274 TGCCTTCTTTTGAAAAGGGACC 59.302 45.455 16.79 5.39 41.99 4.46
5070 7125 2.288213 GCCTTCTTTTGAAAAGGGACCG 60.288 50.000 16.79 3.12 41.99 4.79
5071 7126 3.219281 CCTTCTTTTGAAAAGGGACCGA 58.781 45.455 16.79 0.00 38.72 4.69
5072 7127 3.004419 CCTTCTTTTGAAAAGGGACCGAC 59.996 47.826 16.79 0.00 38.72 4.79
5073 7128 2.215196 TCTTTTGAAAAGGGACCGACG 58.785 47.619 16.79 0.00 0.00 5.12
5074 7129 1.944709 CTTTTGAAAAGGGACCGACGT 59.055 47.619 9.74 0.00 0.00 4.34
5075 7130 2.041251 TTTGAAAAGGGACCGACGTT 57.959 45.000 0.00 0.00 0.00 3.99
5076 7131 1.301423 TTGAAAAGGGACCGACGTTG 58.699 50.000 0.00 0.00 0.00 4.10
5077 7132 0.178533 TGAAAAGGGACCGACGTTGT 59.821 50.000 1.30 0.00 0.00 3.32
5078 7133 0.863799 GAAAAGGGACCGACGTTGTC 59.136 55.000 9.89 9.89 0.00 3.18
5079 7134 0.178533 AAAAGGGACCGACGTTGTCA 59.821 50.000 17.53 0.00 34.36 3.58
5080 7135 0.249741 AAAGGGACCGACGTTGTCAG 60.250 55.000 17.53 0.00 34.36 3.51
5081 7136 2.710724 AAGGGACCGACGTTGTCAGC 62.711 60.000 17.53 4.80 34.36 4.26
5082 7137 3.103911 GGACCGACGTTGTCAGCG 61.104 66.667 17.53 7.60 34.36 5.18
5085 7140 3.403057 CCGACGTTGTCAGCGGTG 61.403 66.667 13.83 8.67 38.99 4.94
5086 7141 3.403057 CGACGTTGTCAGCGGTGG 61.403 66.667 15.67 0.04 32.09 4.61
5087 7142 3.712881 GACGTTGTCAGCGGTGGC 61.713 66.667 13.24 13.24 40.37 5.01
5090 7145 2.672996 GTTGTCAGCGGTGGCCAT 60.673 61.111 17.70 0.00 41.24 4.40
5091 7146 2.115052 TTGTCAGCGGTGGCCATT 59.885 55.556 17.70 0.00 41.24 3.16
5092 7147 2.267351 TTGTCAGCGGTGGCCATTG 61.267 57.895 17.70 5.62 41.24 2.82
5093 7148 2.672996 GTCAGCGGTGGCCATTGT 60.673 61.111 9.72 0.00 41.24 2.71
5094 7149 2.359850 TCAGCGGTGGCCATTGTC 60.360 61.111 9.72 0.00 41.24 3.18
5095 7150 2.360350 CAGCGGTGGCCATTGTCT 60.360 61.111 9.72 0.71 41.24 3.41
5096 7151 2.360350 AGCGGTGGCCATTGTCTG 60.360 61.111 9.72 1.21 41.24 3.51
5105 7160 2.269978 CCATTGTCTGGTGGCTTGG 58.730 57.895 0.00 0.00 40.49 3.61
5106 7161 1.252904 CCATTGTCTGGTGGCTTGGG 61.253 60.000 0.00 0.00 40.49 4.12
5107 7162 0.251297 CATTGTCTGGTGGCTTGGGA 60.251 55.000 0.00 0.00 0.00 4.37
5108 7163 0.038744 ATTGTCTGGTGGCTTGGGAG 59.961 55.000 0.00 0.00 0.00 4.30
5126 7181 4.614673 CAAGTGTGCAAGCCGTTC 57.385 55.556 0.00 0.00 0.00 3.95
5127 7182 1.369209 CAAGTGTGCAAGCCGTTCG 60.369 57.895 0.00 0.00 0.00 3.95
5128 7183 1.522806 AAGTGTGCAAGCCGTTCGA 60.523 52.632 0.00 0.00 0.00 3.71
5129 7184 1.498865 AAGTGTGCAAGCCGTTCGAG 61.499 55.000 0.00 0.00 0.00 4.04
5130 7185 2.108157 TGTGCAAGCCGTTCGAGT 59.892 55.556 0.00 0.00 0.00 4.18
5131 7186 0.942410 GTGTGCAAGCCGTTCGAGTA 60.942 55.000 0.00 0.00 0.00 2.59
5132 7187 0.037697 TGTGCAAGCCGTTCGAGTAT 60.038 50.000 0.00 0.00 0.00 2.12
5133 7188 0.370273 GTGCAAGCCGTTCGAGTATG 59.630 55.000 0.00 0.00 0.00 2.39
5134 7189 0.739462 TGCAAGCCGTTCGAGTATGG 60.739 55.000 0.00 0.00 0.00 2.74
5135 7190 0.739813 GCAAGCCGTTCGAGTATGGT 60.740 55.000 0.00 0.00 0.00 3.55
5136 7191 0.999406 CAAGCCGTTCGAGTATGGTG 59.001 55.000 0.00 0.00 0.00 4.17
5137 7192 0.108329 AAGCCGTTCGAGTATGGTGG 60.108 55.000 0.00 0.00 0.00 4.61
5138 7193 0.968901 AGCCGTTCGAGTATGGTGGA 60.969 55.000 0.00 0.00 0.00 4.02
5139 7194 0.104304 GCCGTTCGAGTATGGTGGAT 59.896 55.000 0.00 0.00 0.00 3.41
5140 7195 1.472728 GCCGTTCGAGTATGGTGGATT 60.473 52.381 0.00 0.00 0.00 3.01
5141 7196 2.201732 CCGTTCGAGTATGGTGGATTG 58.798 52.381 0.00 0.00 0.00 2.67
5142 7197 2.201732 CGTTCGAGTATGGTGGATTGG 58.798 52.381 0.00 0.00 0.00 3.16
5143 7198 2.561569 GTTCGAGTATGGTGGATTGGG 58.438 52.381 0.00 0.00 0.00 4.12
5144 7199 0.468226 TCGAGTATGGTGGATTGGGC 59.532 55.000 0.00 0.00 0.00 5.36
5145 7200 0.180171 CGAGTATGGTGGATTGGGCA 59.820 55.000 0.00 0.00 0.00 5.36
5146 7201 1.202806 CGAGTATGGTGGATTGGGCAT 60.203 52.381 0.00 0.00 0.00 4.40
5147 7202 2.508526 GAGTATGGTGGATTGGGCATC 58.491 52.381 0.00 0.00 0.00 3.91
5155 7210 3.911719 GATTGGGCATCCTGAACCT 57.088 52.632 0.00 0.00 0.00 3.50
5156 7211 1.685148 GATTGGGCATCCTGAACCTC 58.315 55.000 0.00 0.00 0.00 3.85
5157 7212 1.002069 ATTGGGCATCCTGAACCTCA 58.998 50.000 0.00 0.00 0.00 3.86
5158 7213 0.776810 TTGGGCATCCTGAACCTCAA 59.223 50.000 0.00 0.00 0.00 3.02
5159 7214 0.329261 TGGGCATCCTGAACCTCAAG 59.671 55.000 0.00 0.00 0.00 3.02
5160 7215 1.034292 GGGCATCCTGAACCTCAAGC 61.034 60.000 0.00 0.00 0.00 4.01
5161 7216 0.034670 GGCATCCTGAACCTCAAGCT 60.035 55.000 0.00 0.00 0.00 3.74
5162 7217 1.210478 GGCATCCTGAACCTCAAGCTA 59.790 52.381 0.00 0.00 0.00 3.32
5163 7218 2.158696 GGCATCCTGAACCTCAAGCTAT 60.159 50.000 0.00 0.00 0.00 2.97
5164 7219 3.549794 GCATCCTGAACCTCAAGCTATT 58.450 45.455 0.00 0.00 0.00 1.73
5165 7220 4.444876 GGCATCCTGAACCTCAAGCTATTA 60.445 45.833 0.00 0.00 0.00 0.98
5166 7221 4.754114 GCATCCTGAACCTCAAGCTATTAG 59.246 45.833 0.00 0.00 0.00 1.73
5167 7222 5.303971 CATCCTGAACCTCAAGCTATTAGG 58.696 45.833 7.25 7.25 36.42 2.69
5168 7223 3.134804 TCCTGAACCTCAAGCTATTAGGC 59.865 47.826 8.46 0.00 33.42 3.93
5169 7224 3.135530 CCTGAACCTCAAGCTATTAGGCT 59.864 47.826 8.46 0.00 45.30 4.58
5170 7225 4.345257 CCTGAACCTCAAGCTATTAGGCTA 59.655 45.833 8.46 0.00 42.24 3.93
5171 7226 5.012561 CCTGAACCTCAAGCTATTAGGCTAT 59.987 44.000 8.46 0.00 42.24 2.97
5172 7227 5.858381 TGAACCTCAAGCTATTAGGCTATG 58.142 41.667 8.46 0.00 42.24 2.23
5173 7228 5.366768 TGAACCTCAAGCTATTAGGCTATGT 59.633 40.000 8.46 0.00 42.24 2.29
5174 7229 5.220710 ACCTCAAGCTATTAGGCTATGTG 57.779 43.478 8.46 0.00 42.24 3.21
5175 7230 4.656112 ACCTCAAGCTATTAGGCTATGTGT 59.344 41.667 8.46 0.00 42.24 3.72
5176 7231 5.131142 ACCTCAAGCTATTAGGCTATGTGTT 59.869 40.000 8.46 0.00 42.24 3.32
5177 7232 6.058183 CCTCAAGCTATTAGGCTATGTGTTT 58.942 40.000 0.00 0.00 42.24 2.83
5178 7233 6.543831 CCTCAAGCTATTAGGCTATGTGTTTT 59.456 38.462 0.00 0.00 42.24 2.43
5179 7234 7.320443 TCAAGCTATTAGGCTATGTGTTTTG 57.680 36.000 0.00 0.00 42.24 2.44
5180 7235 6.318648 TCAAGCTATTAGGCTATGTGTTTTGG 59.681 38.462 0.00 0.00 42.24 3.28
5181 7236 5.133221 AGCTATTAGGCTATGTGTTTTGGG 58.867 41.667 0.00 0.00 41.16 4.12
5182 7237 4.261614 GCTATTAGGCTATGTGTTTTGGGC 60.262 45.833 0.00 0.00 0.00 5.36
5183 7238 2.889170 TAGGCTATGTGTTTTGGGCA 57.111 45.000 0.00 0.00 0.00 5.36
5184 7239 2.236489 AGGCTATGTGTTTTGGGCAT 57.764 45.000 0.00 0.00 0.00 4.40
5185 7240 1.826720 AGGCTATGTGTTTTGGGCATG 59.173 47.619 0.00 0.00 0.00 4.06
5186 7241 1.643880 GCTATGTGTTTTGGGCATGC 58.356 50.000 9.90 9.90 0.00 4.06
5187 7242 1.205417 GCTATGTGTTTTGGGCATGCT 59.795 47.619 18.92 0.00 0.00 3.79
5188 7243 2.883574 CTATGTGTTTTGGGCATGCTG 58.116 47.619 18.92 0.00 0.00 4.41
5189 7244 0.322322 ATGTGTTTTGGGCATGCTGG 59.678 50.000 18.92 0.00 0.00 4.85
5190 7245 1.668793 GTGTTTTGGGCATGCTGGC 60.669 57.895 18.92 0.00 42.88 4.85
5191 7246 1.837947 TGTTTTGGGCATGCTGGCT 60.838 52.632 18.92 0.00 43.20 4.75
5192 7247 0.541530 TGTTTTGGGCATGCTGGCTA 60.542 50.000 18.92 0.00 43.20 3.93
5193 7248 0.826062 GTTTTGGGCATGCTGGCTAT 59.174 50.000 18.92 0.00 43.20 2.97
5194 7249 0.825410 TTTTGGGCATGCTGGCTATG 59.175 50.000 18.92 0.00 43.20 2.23
5195 7250 0.324552 TTTGGGCATGCTGGCTATGT 60.325 50.000 18.92 0.00 43.20 2.29
5196 7251 1.038681 TTGGGCATGCTGGCTATGTG 61.039 55.000 18.92 0.00 43.20 3.21
5197 7252 1.454479 GGGCATGCTGGCTATGTGT 60.454 57.895 18.92 0.00 43.20 3.72
5198 7253 1.039233 GGGCATGCTGGCTATGTGTT 61.039 55.000 18.92 0.00 43.20 3.32
5199 7254 0.819582 GGCATGCTGGCTATGTGTTT 59.180 50.000 18.92 0.00 40.14 2.83
5284 7339 2.671682 GAGGGGCTCGCTTTCCTT 59.328 61.111 0.00 0.00 0.00 3.36
5306 7361 4.689549 TTCCGGCCGTGGAGGAGA 62.690 66.667 26.12 9.36 45.00 3.71
5331 7386 3.123620 GCTTCAGGAGGCTGCACG 61.124 66.667 9.23 0.00 0.00 5.34
5724 7780 0.318445 CGACGTCTTGGTTCTTCCGT 60.318 55.000 14.70 0.00 39.52 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.443283 GCAAAATGAGTATCTGTATTTTAGCAG 57.557 33.333 0.00 0.00 33.01 4.24
48 49 7.112122 TGACTAGAAAGTGTATTAGGACGGTA 58.888 38.462 0.00 0.00 35.56 4.02
83 84 4.151883 AGCTGAAGGCCTGAATACAAAAA 58.848 39.130 5.69 0.00 43.05 1.94
91 92 1.944177 AGAGTAGCTGAAGGCCTGAA 58.056 50.000 5.69 0.00 43.05 3.02
139 154 3.496160 GCCTCACTTTCAAGTTCAGGGTA 60.496 47.826 13.23 0.00 37.15 3.69
161 176 0.965866 TAGTGTGTCCTCTGGCCTCG 60.966 60.000 3.32 0.00 0.00 4.63
169 184 3.706594 TGGATCCTTGATAGTGTGTCCTC 59.293 47.826 14.23 0.00 0.00 3.71
206 222 3.886505 TGGAGTGGGAAACAATACACAAC 59.113 43.478 0.00 0.00 32.00 3.32
255 271 9.988350 CTAGTATAATGGTTTGTGAATTGTGAC 57.012 33.333 0.00 0.00 0.00 3.67
256 272 9.173021 CCTAGTATAATGGTTTGTGAATTGTGA 57.827 33.333 0.00 0.00 0.00 3.58
257 273 9.173021 TCCTAGTATAATGGTTTGTGAATTGTG 57.827 33.333 0.00 0.00 0.00 3.33
258 274 9.747898 TTCCTAGTATAATGGTTTGTGAATTGT 57.252 29.630 0.00 0.00 0.00 2.71
262 278 9.403583 GGATTTCCTAGTATAATGGTTTGTGAA 57.596 33.333 0.00 0.00 0.00 3.18
346 362 2.987149 AGAGCACAAGAATACAACGACG 59.013 45.455 0.00 0.00 0.00 5.12
347 363 3.987868 TGAGAGCACAAGAATACAACGAC 59.012 43.478 0.00 0.00 0.00 4.34
348 364 4.251543 TGAGAGCACAAGAATACAACGA 57.748 40.909 0.00 0.00 0.00 3.85
349 365 4.449068 ACTTGAGAGCACAAGAATACAACG 59.551 41.667 19.61 0.00 46.85 4.10
493 514 0.321564 GCATTCTTTTTGGCCCCACC 60.322 55.000 0.00 0.00 39.84 4.61
499 520 1.701704 CCGACAGCATTCTTTTTGGC 58.298 50.000 0.00 0.00 0.00 4.52
545 566 9.454859 AGTTCTCCTTCTGGTTTATAAAAGATG 57.545 33.333 0.00 3.23 34.23 2.90
583 1149 4.142138 ACTCGCTATCAGAGTGTAAAAGGG 60.142 45.833 0.00 0.00 46.12 3.95
603 1175 3.878086 TGTGAGCATCGAAAAACACTC 57.122 42.857 13.92 5.63 38.61 3.51
613 1185 1.293924 GGAGGTGATTGTGAGCATCG 58.706 55.000 0.00 0.00 38.61 3.84
618 1190 1.625315 TCCAGTGGAGGTGATTGTGAG 59.375 52.381 8.12 0.00 0.00 3.51
656 1228 7.179160 TCGTATATGTGATCAATCCTCCTTCAT 59.821 37.037 0.00 0.00 0.00 2.57
714 1286 9.393249 CGCTCTTATATTTCTTTACAGAGAGAG 57.607 37.037 0.00 0.00 30.76 3.20
715 1287 8.904834 ACGCTCTTATATTTCTTTACAGAGAGA 58.095 33.333 4.35 0.00 32.80 3.10
716 1288 9.522804 AACGCTCTTATATTTCTTTACAGAGAG 57.477 33.333 0.00 0.00 34.15 3.20
717 1289 9.871238 AAACGCTCTTATATTTCTTTACAGAGA 57.129 29.630 0.00 0.00 0.00 3.10
776 1348 9.194972 TGCAATTACTCCATCCATAAACAAATA 57.805 29.630 0.00 0.00 0.00 1.40
777 1349 8.076910 TGCAATTACTCCATCCATAAACAAAT 57.923 30.769 0.00 0.00 0.00 2.32
778 1350 7.473735 TGCAATTACTCCATCCATAAACAAA 57.526 32.000 0.00 0.00 0.00 2.83
779 1351 7.473735 TTGCAATTACTCCATCCATAAACAA 57.526 32.000 0.00 0.00 0.00 2.83
780 1352 7.473735 TTTGCAATTACTCCATCCATAAACA 57.526 32.000 0.00 0.00 0.00 2.83
781 1353 7.042523 GCATTTGCAATTACTCCATCCATAAAC 60.043 37.037 0.00 0.00 41.59 2.01
782 1354 6.985645 GCATTTGCAATTACTCCATCCATAAA 59.014 34.615 0.00 0.00 41.59 1.40
783 1355 6.324512 AGCATTTGCAATTACTCCATCCATAA 59.675 34.615 0.00 0.00 45.16 1.90
784 1356 5.834742 AGCATTTGCAATTACTCCATCCATA 59.165 36.000 0.00 0.00 45.16 2.74
785 1357 4.652421 AGCATTTGCAATTACTCCATCCAT 59.348 37.500 0.00 0.00 45.16 3.41
786 1358 4.025360 AGCATTTGCAATTACTCCATCCA 58.975 39.130 0.00 0.00 45.16 3.41
787 1359 4.660789 AGCATTTGCAATTACTCCATCC 57.339 40.909 0.00 0.00 45.16 3.51
788 1360 7.380602 GTCATAAGCATTTGCAATTACTCCATC 59.619 37.037 0.00 0.00 45.16 3.51
789 1361 7.069085 AGTCATAAGCATTTGCAATTACTCCAT 59.931 33.333 0.00 0.00 45.16 3.41
790 1362 6.377996 AGTCATAAGCATTTGCAATTACTCCA 59.622 34.615 0.00 0.00 45.16 3.86
791 1363 6.799512 AGTCATAAGCATTTGCAATTACTCC 58.200 36.000 0.00 0.00 45.16 3.85
792 1364 8.830580 TCTAGTCATAAGCATTTGCAATTACTC 58.169 33.333 0.00 0.00 45.16 2.59
793 1365 8.737168 TCTAGTCATAAGCATTTGCAATTACT 57.263 30.769 0.00 7.43 45.16 2.24
794 1366 9.787532 TTTCTAGTCATAAGCATTTGCAATTAC 57.212 29.630 0.00 0.00 45.16 1.89
850 1424 0.750850 TTATCTGGCCTGGAGTACGC 59.249 55.000 10.07 0.00 0.00 4.42
851 1425 3.069586 TGATTTATCTGGCCTGGAGTACG 59.930 47.826 10.07 0.00 0.00 3.67
852 1426 4.101741 ACTGATTTATCTGGCCTGGAGTAC 59.898 45.833 10.07 0.00 0.00 2.73
855 1429 3.853355 ACTGATTTATCTGGCCTGGAG 57.147 47.619 10.07 0.00 0.00 3.86
859 1433 4.396166 CGTTCAAACTGATTTATCTGGCCT 59.604 41.667 3.32 0.00 0.00 5.19
860 1434 4.394920 TCGTTCAAACTGATTTATCTGGCC 59.605 41.667 0.00 0.00 0.00 5.36
890 1464 1.656587 ATACTGCCTCTGTCCCACAA 58.343 50.000 0.00 0.00 0.00 3.33
892 1466 2.500098 TGTAATACTGCCTCTGTCCCAC 59.500 50.000 0.00 0.00 0.00 4.61
895 1469 3.887621 TGTGTAATACTGCCTCTGTCC 57.112 47.619 0.00 0.00 0.00 4.02
967 2864 7.745717 AGCTCCCACTAGCACAATAATAATAA 58.254 34.615 0.00 0.00 45.30 1.40
995 2892 9.808808 TTCATGTTTATTTTTCATTTTCATGCG 57.191 25.926 0.00 0.00 32.89 4.73
1071 2973 4.631131 GGTTGGTTTCTTCAATTTCCAGG 58.369 43.478 0.00 0.00 0.00 4.45
1081 2983 1.002792 GACAGCACGGTTGGTTTCTTC 60.003 52.381 0.00 0.00 29.02 2.87
1112 3014 1.919956 CTCTGCTTGGCCTCTTTGCG 61.920 60.000 3.32 0.00 0.00 4.85
1152 3054 2.224917 CCCGTTCTCCTATCCTAGAGCT 60.225 54.545 0.00 0.00 0.00 4.09
1168 3070 0.744281 CTTGTTTGTTGGCTCCCGTT 59.256 50.000 0.00 0.00 0.00 4.44
1170 3072 1.001378 CTTCTTGTTTGTTGGCTCCCG 60.001 52.381 0.00 0.00 0.00 5.14
1206 3108 3.155167 AGCGGGAATCTCGGACCC 61.155 66.667 4.15 0.00 40.17 4.46
1241 3143 3.056322 CCTTCCAATGAGCCAAGAAAAGG 60.056 47.826 0.00 0.00 0.00 3.11
1242 3144 3.615834 GCCTTCCAATGAGCCAAGAAAAG 60.616 47.826 0.00 0.00 0.00 2.27
1264 3168 4.517934 CCCAGATGGCAGGCAGGG 62.518 72.222 1.89 3.93 0.00 4.45
1300 3204 1.971695 CCAAAACCCCACGCTCTCC 60.972 63.158 0.00 0.00 0.00 3.71
1325 3229 3.028850 AGAAATGATGGGGTTGATGCTG 58.971 45.455 0.00 0.00 0.00 4.41
1358 3267 0.034756 ACCAATTTCGCCCCAAAAGC 59.965 50.000 0.00 0.00 0.00 3.51
1385 3294 5.594317 GGCAGCAGAAAAAGGGAAAGATATA 59.406 40.000 0.00 0.00 0.00 0.86
1390 3299 1.966354 AGGCAGCAGAAAAAGGGAAAG 59.034 47.619 0.00 0.00 0.00 2.62
1404 3314 0.746659 AACCAACAAACTGAGGCAGC 59.253 50.000 0.00 0.00 34.37 5.25
1408 3318 5.049828 GGAATTCAAACCAACAAACTGAGG 58.950 41.667 7.93 0.00 0.00 3.86
1458 3370 5.230942 ACAAACAACATCAAACCAACGAAA 58.769 33.333 0.00 0.00 0.00 3.46
1461 3373 5.231147 CCTAACAAACAACATCAAACCAACG 59.769 40.000 0.00 0.00 0.00 4.10
1463 3375 6.531503 TCCTAACAAACAACATCAAACCAA 57.468 33.333 0.00 0.00 0.00 3.67
1464 3376 6.514212 CGATCCTAACAAACAACATCAAACCA 60.514 38.462 0.00 0.00 0.00 3.67
1465 3377 5.856455 CGATCCTAACAAACAACATCAAACC 59.144 40.000 0.00 0.00 0.00 3.27
1466 3378 5.856455 CCGATCCTAACAAACAACATCAAAC 59.144 40.000 0.00 0.00 0.00 2.93
1467 3379 5.563867 GCCGATCCTAACAAACAACATCAAA 60.564 40.000 0.00 0.00 0.00 2.69
1468 3380 4.083003 GCCGATCCTAACAAACAACATCAA 60.083 41.667 0.00 0.00 0.00 2.57
1469 3381 3.438781 GCCGATCCTAACAAACAACATCA 59.561 43.478 0.00 0.00 0.00 3.07
1476 3388 0.733150 GGCAGCCGATCCTAACAAAC 59.267 55.000 0.00 0.00 0.00 2.93
1492 3404 3.061752 CCAGCTTTTGGCATGGCA 58.938 55.556 19.43 19.43 44.79 4.92
1682 3597 6.261826 CCACCTAATCTGCAATTTCTAAGGAG 59.738 42.308 11.73 6.77 0.00 3.69
1686 3601 5.509498 AGCCACCTAATCTGCAATTTCTAA 58.491 37.500 0.00 0.00 0.00 2.10
1698 3613 4.954092 CTTGAGAACAAGCCACCTAATC 57.046 45.455 0.00 0.00 45.19 1.75
1714 3629 1.638467 GCGATTACGGCTGCTTGAG 59.362 57.895 0.00 0.00 40.15 3.02
1800 3761 1.631405 CCAAGCCCAAGAATGAACCA 58.369 50.000 0.00 0.00 0.00 3.67
1801 3762 0.897621 CCCAAGCCCAAGAATGAACC 59.102 55.000 0.00 0.00 0.00 3.62
1805 3766 0.177141 CATGCCCAAGCCCAAGAATG 59.823 55.000 0.00 0.00 38.69 2.67
1820 3781 1.153208 CTGGTCTGCCTCTCCATGC 60.153 63.158 0.00 0.00 35.27 4.06
1961 3922 1.902508 TCCTCTGGACATTGGAGACAC 59.097 52.381 0.00 0.00 42.67 3.67
1962 3923 2.325661 TCCTCTGGACATTGGAGACA 57.674 50.000 0.00 0.00 39.83 3.41
1971 3932 1.617018 CGGCAAGGATCCTCTGGACA 61.617 60.000 16.52 0.00 32.98 4.02
2067 4028 3.164977 TCGGTGTGCCCCTTGTCA 61.165 61.111 0.00 0.00 0.00 3.58
2101 4062 4.933505 TCTGCATATCAGAGACCTTCAG 57.066 45.455 0.00 0.00 46.34 3.02
2157 4118 2.281831 TTGGCCGCGATGTGGAAA 60.282 55.556 8.23 0.00 34.74 3.13
2250 4211 4.551702 TCGAAGGAATCATTTCACAGGA 57.448 40.909 0.00 0.00 33.23 3.86
2269 4230 5.063944 CCAAATCCTGATTACACAGACTTCG 59.936 44.000 0.00 0.00 39.94 3.79
2277 4238 5.376625 TCTATGCCCAAATCCTGATTACAC 58.623 41.667 0.00 0.00 0.00 2.90
2425 4416 3.455910 AGATGGCCAGATGTTAGCACTTA 59.544 43.478 13.05 0.00 0.00 2.24
2469 4465 5.490139 AAATCAACTCAGGTATGCATTCG 57.510 39.130 3.54 0.00 0.00 3.34
2554 4553 3.817647 GCCCTCATAAATTAGGACTGCTG 59.182 47.826 0.00 0.00 34.58 4.41
2585 4584 9.401058 CATAACTTCTTTGAGAATAACCCAGAT 57.599 33.333 0.00 0.00 33.13 2.90
2770 4771 5.104527 TCAAGCAGGTAATTACAGCTATGGT 60.105 40.000 25.61 14.91 37.87 3.55
2826 4827 4.922206 TGGAACAAGAGAATAAGCCACAT 58.078 39.130 0.00 0.00 31.92 3.21
2843 4844 7.373493 ACATCTGTGAAATCAAGAAATGGAAC 58.627 34.615 0.00 0.00 0.00 3.62
2860 4861 4.511527 ACAGCTCCTTCAATACATCTGTG 58.488 43.478 0.00 0.00 32.96 3.66
2861 4862 4.833478 ACAGCTCCTTCAATACATCTGT 57.167 40.909 0.00 0.00 0.00 3.41
2869 4870 1.542492 CCTGCAACAGCTCCTTCAAT 58.458 50.000 0.00 0.00 0.00 2.57
2905 4906 5.178809 GGCGTTTACAGAGTTTGTAGTCATT 59.821 40.000 0.00 0.00 42.92 2.57
2932 4933 1.005748 GGCAGCAGTTTCCAAAGCC 60.006 57.895 0.00 0.00 0.00 4.35
3360 5361 3.068165 CAGTAACACTGTGACAGGACAGA 59.932 47.826 17.92 0.00 45.39 3.41
3365 5366 3.131396 GGTTCAGTAACACTGTGACAGG 58.869 50.000 17.92 8.42 46.03 4.00
3366 5367 4.060038 AGGTTCAGTAACACTGTGACAG 57.940 45.455 15.86 11.70 46.03 3.51
3368 5369 5.197682 ACTAGGTTCAGTAACACTGTGAC 57.802 43.478 15.86 2.98 46.03 3.67
3369 5370 5.864418 AACTAGGTTCAGTAACACTGTGA 57.136 39.130 15.86 0.00 46.03 3.58
3370 5371 6.715464 CAAAACTAGGTTCAGTAACACTGTG 58.285 40.000 6.19 6.19 46.03 3.66
3371 5372 5.296035 GCAAAACTAGGTTCAGTAACACTGT 59.704 40.000 0.00 0.00 46.03 3.55
3372 5373 7.225931 TTAGCAAAACTAGGTTCAGTAACACTG 59.774 37.037 0.00 0.00 38.69 3.66
3373 5374 5.681639 AGCAAAACTAGGTTCAGTAACACT 58.318 37.500 0.00 0.00 37.34 3.55
3374 5375 7.307811 CCTTAGCAAAACTAGGTTCAGTAACAC 60.308 40.741 0.00 0.00 37.34 3.32
3571 5585 4.164981 TCTTTCCAAGAACCCTAGCTACA 58.835 43.478 0.00 0.00 33.83 2.74
3578 5592 4.106341 TCAATCCTTCTTTCCAAGAACCCT 59.894 41.667 0.00 0.00 42.31 4.34
3579 5593 4.407365 TCAATCCTTCTTTCCAAGAACCC 58.593 43.478 0.00 0.00 42.31 4.11
3592 5606 9.606631 ACAATTACTAAGAGACATCAATCCTTC 57.393 33.333 0.00 0.00 0.00 3.46
3620 5637 9.103861 GAATAGGAACTGGAAAGTTCTCAATAG 57.896 37.037 15.94 0.00 45.34 1.73
3646 5663 6.803320 CAGTCAATATACAAAAACCACTGCAG 59.197 38.462 13.48 13.48 0.00 4.41
3664 5681 4.885907 GGAATCACACATGGATCAGTCAAT 59.114 41.667 0.00 0.00 0.00 2.57
3674 5691 2.439409 TCTGCAAGGAATCACACATGG 58.561 47.619 0.00 0.00 0.00 3.66
3697 5715 5.126222 CCTCAACTGATAGTAGAGTCTGCAA 59.874 44.000 11.07 0.00 0.00 4.08
3798 5816 2.610479 GGCGTCTCTCAGAATGTTGACA 60.610 50.000 0.00 0.00 37.40 3.58
4020 6038 4.760047 ATGAGCACCGCCACGACC 62.760 66.667 0.00 0.00 0.00 4.79
4350 6368 2.353958 CATGCCAGCCACCAGTCT 59.646 61.111 0.00 0.00 0.00 3.24
4497 6515 1.149174 GACCGGCATGGACCATGAT 59.851 57.895 34.15 17.50 43.81 2.45
4520 6538 2.367202 TTGATCAGCTCCGGGTCCC 61.367 63.158 0.00 0.00 0.00 4.46
4585 6603 2.438975 TACAGATCCCCGCGACGT 60.439 61.111 8.23 0.00 0.00 4.34
4720 6739 2.005451 CAAGCACAGCTGAGGTGATAC 58.995 52.381 23.35 6.91 39.62 2.24
4774 6796 2.520465 TACAGCATGCACCAGACGGG 62.520 60.000 21.98 0.00 42.53 5.28
4776 6798 0.654160 CATACAGCATGCACCAGACG 59.346 55.000 21.98 1.31 42.53 4.18
4782 6804 1.942657 ACGAATCCATACAGCATGCAC 59.057 47.619 21.98 0.00 42.53 4.57
4844 6866 7.028361 CCTTCTCTAAAAACTGTAGGTACTCG 58.972 42.308 0.00 0.00 41.75 4.18
4845 6867 7.178097 TCCCTTCTCTAAAAACTGTAGGTACTC 59.822 40.741 0.00 0.00 41.75 2.59
4855 6877 6.365520 TCTTTTGCTCCCTTCTCTAAAAACT 58.634 36.000 0.00 0.00 0.00 2.66
4884 6939 3.118920 TCGCATCCCACGAGAATTTCTTA 60.119 43.478 0.00 0.00 33.96 2.10
4886 6941 1.207089 TCGCATCCCACGAGAATTTCT 59.793 47.619 0.00 0.00 33.96 2.52
4889 6944 1.338674 TGTTCGCATCCCACGAGAATT 60.339 47.619 0.00 0.00 41.18 2.17
4890 6945 0.249120 TGTTCGCATCCCACGAGAAT 59.751 50.000 0.00 0.00 41.18 2.40
4891 6946 0.249120 ATGTTCGCATCCCACGAGAA 59.751 50.000 0.00 0.00 41.18 2.87
4892 6947 0.249120 AATGTTCGCATCCCACGAGA 59.751 50.000 0.00 0.00 41.18 4.04
4893 6948 0.652592 GAATGTTCGCATCCCACGAG 59.347 55.000 0.00 0.00 41.18 4.18
4894 6949 1.081556 CGAATGTTCGCATCCCACGA 61.082 55.000 1.90 0.00 44.26 4.35
4895 6950 1.348250 CGAATGTTCGCATCCCACG 59.652 57.895 1.90 0.00 44.26 4.94
4926 6981 4.442706 GACATTGGTAGGTGTGGATGTAG 58.557 47.826 0.00 0.00 0.00 2.74
4927 6982 3.199071 GGACATTGGTAGGTGTGGATGTA 59.801 47.826 0.00 0.00 0.00 2.29
4931 6986 2.038863 AGGACATTGGTAGGTGTGGA 57.961 50.000 0.00 0.00 0.00 4.02
4945 7000 8.824756 ATTTGTGATAGAGTAGTCTTAGGACA 57.175 34.615 5.16 1.88 44.36 4.02
4948 7003 9.349713 AGAGATTTGTGATAGAGTAGTCTTAGG 57.650 37.037 5.16 0.00 33.84 2.69
4953 7008 9.862371 TTTCAAGAGATTTGTGATAGAGTAGTC 57.138 33.333 0.00 0.00 0.00 2.59
4962 7017 6.012113 TGGATGGTTTCAAGAGATTTGTGAT 58.988 36.000 0.00 0.00 0.00 3.06
4971 7026 2.554032 GTGGTGTGGATGGTTTCAAGAG 59.446 50.000 0.00 0.00 0.00 2.85
5010 7065 2.736236 ATCGATCAGCCGCATCGC 60.736 61.111 7.95 0.00 42.42 4.58
5011 7066 2.378084 CCATCGATCAGCCGCATCG 61.378 63.158 6.74 6.74 43.77 3.84
5012 7067 2.031516 CCCATCGATCAGCCGCATC 61.032 63.158 0.00 0.00 0.00 3.91
5013 7068 2.031616 CCCATCGATCAGCCGCAT 59.968 61.111 0.00 0.00 0.00 4.73
5014 7069 2.535485 AAACCCATCGATCAGCCGCA 62.535 55.000 0.00 0.00 0.00 5.69
5015 7070 1.819632 AAACCCATCGATCAGCCGC 60.820 57.895 0.00 0.00 0.00 6.53
5016 7071 0.461870 TCAAACCCATCGATCAGCCG 60.462 55.000 0.00 0.00 0.00 5.52
5017 7072 1.750193 TTCAAACCCATCGATCAGCC 58.250 50.000 0.00 0.00 0.00 4.85
5018 7073 3.440173 TCTTTTCAAACCCATCGATCAGC 59.560 43.478 0.00 0.00 0.00 4.26
5019 7074 4.095483 CCTCTTTTCAAACCCATCGATCAG 59.905 45.833 0.00 0.00 0.00 2.90
5020 7075 4.009675 CCTCTTTTCAAACCCATCGATCA 58.990 43.478 0.00 0.00 0.00 2.92
5021 7076 4.261801 TCCTCTTTTCAAACCCATCGATC 58.738 43.478 0.00 0.00 0.00 3.69
5022 7077 4.301072 TCCTCTTTTCAAACCCATCGAT 57.699 40.909 0.00 0.00 0.00 3.59
5023 7078 3.780804 TCCTCTTTTCAAACCCATCGA 57.219 42.857 0.00 0.00 0.00 3.59
5024 7079 4.437390 CGAATCCTCTTTTCAAACCCATCG 60.437 45.833 0.00 0.00 0.00 3.84
5025 7080 4.459337 ACGAATCCTCTTTTCAAACCCATC 59.541 41.667 0.00 0.00 0.00 3.51
5026 7081 4.218417 CACGAATCCTCTTTTCAAACCCAT 59.782 41.667 0.00 0.00 0.00 4.00
5027 7082 3.568007 CACGAATCCTCTTTTCAAACCCA 59.432 43.478 0.00 0.00 0.00 4.51
5028 7083 3.611766 GCACGAATCCTCTTTTCAAACCC 60.612 47.826 0.00 0.00 0.00 4.11
5029 7084 3.565516 GCACGAATCCTCTTTTCAAACC 58.434 45.455 0.00 0.00 0.00 3.27
5030 7085 3.253432 AGGCACGAATCCTCTTTTCAAAC 59.747 43.478 0.00 0.00 0.00 2.93
5031 7086 3.486383 AGGCACGAATCCTCTTTTCAAA 58.514 40.909 0.00 0.00 0.00 2.69
5032 7087 3.140325 AGGCACGAATCCTCTTTTCAA 57.860 42.857 0.00 0.00 0.00 2.69
5033 7088 2.859165 AGGCACGAATCCTCTTTTCA 57.141 45.000 0.00 0.00 0.00 2.69
5034 7089 3.339141 AGAAGGCACGAATCCTCTTTTC 58.661 45.455 0.00 0.00 32.45 2.29
5035 7090 3.425162 AGAAGGCACGAATCCTCTTTT 57.575 42.857 0.00 0.00 32.45 2.27
5036 7091 3.425162 AAGAAGGCACGAATCCTCTTT 57.575 42.857 0.00 0.00 32.45 2.52
5037 7092 3.425162 AAAGAAGGCACGAATCCTCTT 57.575 42.857 0.00 0.00 32.45 2.85
5038 7093 3.077359 CAAAAGAAGGCACGAATCCTCT 58.923 45.455 0.00 0.00 32.45 3.69
5039 7094 3.074412 TCAAAAGAAGGCACGAATCCTC 58.926 45.455 0.00 0.00 32.45 3.71
5040 7095 3.140325 TCAAAAGAAGGCACGAATCCT 57.860 42.857 0.00 0.00 34.90 3.24
5041 7096 3.915437 TTCAAAAGAAGGCACGAATCC 57.085 42.857 0.00 0.00 0.00 3.01
5042 7097 4.681483 CCTTTTCAAAAGAAGGCACGAATC 59.319 41.667 11.73 0.00 36.34 2.52
5043 7098 4.501400 CCCTTTTCAAAAGAAGGCACGAAT 60.501 41.667 11.73 0.00 40.87 3.34
5044 7099 3.181480 CCCTTTTCAAAAGAAGGCACGAA 60.181 43.478 11.73 0.00 40.87 3.85
5045 7100 2.360801 CCCTTTTCAAAAGAAGGCACGA 59.639 45.455 11.73 0.00 40.87 4.35
5046 7101 2.360801 TCCCTTTTCAAAAGAAGGCACG 59.639 45.455 11.73 0.00 40.87 5.34
5047 7102 3.492656 GGTCCCTTTTCAAAAGAAGGCAC 60.493 47.826 11.73 5.63 40.87 5.01
5048 7103 2.698274 GGTCCCTTTTCAAAAGAAGGCA 59.302 45.455 11.73 0.00 40.87 4.75
5049 7104 2.288213 CGGTCCCTTTTCAAAAGAAGGC 60.288 50.000 11.73 3.88 40.87 4.35
5050 7105 3.004419 GTCGGTCCCTTTTCAAAAGAAGG 59.996 47.826 11.73 5.22 41.67 3.46
5051 7106 3.303791 CGTCGGTCCCTTTTCAAAAGAAG 60.304 47.826 11.73 2.72 0.00 2.85
5052 7107 2.614983 CGTCGGTCCCTTTTCAAAAGAA 59.385 45.455 11.73 0.00 0.00 2.52
5053 7108 2.215196 CGTCGGTCCCTTTTCAAAAGA 58.785 47.619 11.73 0.00 0.00 2.52
5054 7109 1.944709 ACGTCGGTCCCTTTTCAAAAG 59.055 47.619 2.55 2.55 0.00 2.27
5055 7110 2.041251 ACGTCGGTCCCTTTTCAAAA 57.959 45.000 0.00 0.00 0.00 2.44
5056 7111 1.671845 CAACGTCGGTCCCTTTTCAAA 59.328 47.619 0.00 0.00 0.00 2.69
5057 7112 1.301423 CAACGTCGGTCCCTTTTCAA 58.699 50.000 0.00 0.00 0.00 2.69
5058 7113 0.178533 ACAACGTCGGTCCCTTTTCA 59.821 50.000 0.00 0.00 0.00 2.69
5059 7114 0.863799 GACAACGTCGGTCCCTTTTC 59.136 55.000 8.67 0.00 0.00 2.29
5060 7115 0.178533 TGACAACGTCGGTCCCTTTT 59.821 50.000 15.25 0.00 34.95 2.27
5061 7116 0.249741 CTGACAACGTCGGTCCCTTT 60.250 55.000 15.25 0.00 34.54 3.11
5062 7117 1.366366 CTGACAACGTCGGTCCCTT 59.634 57.895 15.25 0.00 34.54 3.95
5063 7118 3.048602 CTGACAACGTCGGTCCCT 58.951 61.111 15.25 0.00 34.54 4.20
5064 7119 2.737376 GCTGACAACGTCGGTCCC 60.737 66.667 15.25 5.48 40.69 4.46
5065 7120 3.103911 CGCTGACAACGTCGGTCC 61.104 66.667 15.25 3.22 40.69 4.46
5066 7121 3.103911 CCGCTGACAACGTCGGTC 61.104 66.667 12.07 12.07 40.69 4.79
5068 7123 3.403057 CACCGCTGACAACGTCGG 61.403 66.667 9.33 9.33 46.61 4.79
5069 7124 3.403057 CCACCGCTGACAACGTCG 61.403 66.667 0.00 0.00 34.95 5.12
5070 7125 3.712881 GCCACCGCTGACAACGTC 61.713 66.667 0.00 0.00 0.00 4.34
5073 7128 2.268076 AATGGCCACCGCTGACAAC 61.268 57.895 8.16 0.00 34.44 3.32
5074 7129 2.115052 AATGGCCACCGCTGACAA 59.885 55.556 8.16 0.00 34.44 3.18
5075 7130 2.672651 CAATGGCCACCGCTGACA 60.673 61.111 8.16 0.00 34.44 3.58
5076 7131 2.672996 ACAATGGCCACCGCTGAC 60.673 61.111 8.16 0.00 34.44 3.51
5077 7132 2.359850 GACAATGGCCACCGCTGA 60.360 61.111 8.16 0.00 34.44 4.26
5078 7133 2.360350 AGACAATGGCCACCGCTG 60.360 61.111 8.16 5.95 34.44 5.18
5079 7134 2.360350 CAGACAATGGCCACCGCT 60.360 61.111 8.16 0.00 34.44 5.52
5080 7135 3.443045 CCAGACAATGGCCACCGC 61.443 66.667 8.16 0.00 43.83 5.68
5088 7143 0.251297 TCCCAAGCCACCAGACAATG 60.251 55.000 0.00 0.00 0.00 2.82
5089 7144 0.038744 CTCCCAAGCCACCAGACAAT 59.961 55.000 0.00 0.00 0.00 2.71
5090 7145 1.455849 CTCCCAAGCCACCAGACAA 59.544 57.895 0.00 0.00 0.00 3.18
5091 7146 3.160585 CTCCCAAGCCACCAGACA 58.839 61.111 0.00 0.00 0.00 3.41
5092 7147 2.360475 GCTCCCAAGCCACCAGAC 60.360 66.667 0.00 0.00 43.10 3.51
5109 7164 1.369209 CGAACGGCTTGCACACTTG 60.369 57.895 0.00 0.00 0.00 3.16
5110 7165 1.498865 CTCGAACGGCTTGCACACTT 61.499 55.000 0.00 0.00 0.00 3.16
5111 7166 1.956170 CTCGAACGGCTTGCACACT 60.956 57.895 0.00 0.00 0.00 3.55
5112 7167 0.942410 TACTCGAACGGCTTGCACAC 60.942 55.000 0.00 0.00 0.00 3.82
5113 7168 0.037697 ATACTCGAACGGCTTGCACA 60.038 50.000 0.00 0.00 0.00 4.57
5114 7169 0.370273 CATACTCGAACGGCTTGCAC 59.630 55.000 0.00 0.00 0.00 4.57
5115 7170 0.739462 CCATACTCGAACGGCTTGCA 60.739 55.000 0.00 0.00 0.00 4.08
5116 7171 0.739813 ACCATACTCGAACGGCTTGC 60.740 55.000 0.00 0.00 0.00 4.01
5117 7172 0.999406 CACCATACTCGAACGGCTTG 59.001 55.000 0.00 0.00 0.00 4.01
5118 7173 0.108329 CCACCATACTCGAACGGCTT 60.108 55.000 0.00 0.00 0.00 4.35
5119 7174 0.968901 TCCACCATACTCGAACGGCT 60.969 55.000 0.00 0.00 0.00 5.52
5120 7175 0.104304 ATCCACCATACTCGAACGGC 59.896 55.000 0.00 0.00 0.00 5.68
5121 7176 2.201732 CAATCCACCATACTCGAACGG 58.798 52.381 0.00 0.00 0.00 4.44
5122 7177 2.201732 CCAATCCACCATACTCGAACG 58.798 52.381 0.00 0.00 0.00 3.95
5123 7178 2.561569 CCCAATCCACCATACTCGAAC 58.438 52.381 0.00 0.00 0.00 3.95
5124 7179 1.134220 GCCCAATCCACCATACTCGAA 60.134 52.381 0.00 0.00 0.00 3.71
5125 7180 0.468226 GCCCAATCCACCATACTCGA 59.532 55.000 0.00 0.00 0.00 4.04
5126 7181 0.180171 TGCCCAATCCACCATACTCG 59.820 55.000 0.00 0.00 0.00 4.18
5127 7182 2.508526 GATGCCCAATCCACCATACTC 58.491 52.381 0.00 0.00 0.00 2.59
5128 7183 2.664402 GATGCCCAATCCACCATACT 57.336 50.000 0.00 0.00 0.00 2.12
5137 7192 1.064463 TGAGGTTCAGGATGCCCAATC 60.064 52.381 0.00 0.00 34.76 2.67
5138 7193 1.002069 TGAGGTTCAGGATGCCCAAT 58.998 50.000 0.00 0.00 34.76 3.16
5139 7194 0.776810 TTGAGGTTCAGGATGCCCAA 59.223 50.000 0.00 0.00 34.76 4.12
5140 7195 0.329261 CTTGAGGTTCAGGATGCCCA 59.671 55.000 0.00 0.00 34.76 5.36
5141 7196 1.034292 GCTTGAGGTTCAGGATGCCC 61.034 60.000 0.00 0.00 34.76 5.36
5142 7197 0.034670 AGCTTGAGGTTCAGGATGCC 60.035 55.000 0.00 0.00 34.76 4.40
5143 7198 2.698855 TAGCTTGAGGTTCAGGATGC 57.301 50.000 0.00 0.00 34.76 3.91
5144 7199 5.303971 CCTAATAGCTTGAGGTTCAGGATG 58.696 45.833 0.00 0.00 37.54 3.51
5145 7200 4.202409 GCCTAATAGCTTGAGGTTCAGGAT 60.202 45.833 0.00 0.00 32.53 3.24
5146 7201 3.134804 GCCTAATAGCTTGAGGTTCAGGA 59.865 47.826 0.00 0.00 32.53 3.86
5147 7202 3.135530 AGCCTAATAGCTTGAGGTTCAGG 59.864 47.826 0.00 0.00 41.41 3.86
5148 7203 4.414337 AGCCTAATAGCTTGAGGTTCAG 57.586 45.455 0.00 0.00 41.41 3.02
5149 7204 5.366768 ACATAGCCTAATAGCTTGAGGTTCA 59.633 40.000 0.00 0.00 41.41 3.18
5150 7205 5.698545 CACATAGCCTAATAGCTTGAGGTTC 59.301 44.000 0.00 0.00 41.41 3.62
5151 7206 5.131142 ACACATAGCCTAATAGCTTGAGGTT 59.869 40.000 0.00 0.00 41.41 3.50
5152 7207 4.656112 ACACATAGCCTAATAGCTTGAGGT 59.344 41.667 0.00 0.00 41.41 3.85
5153 7208 5.220710 ACACATAGCCTAATAGCTTGAGG 57.779 43.478 0.00 0.00 41.41 3.86
5154 7209 7.412853 CAAAACACATAGCCTAATAGCTTGAG 58.587 38.462 0.00 0.00 41.41 3.02
5155 7210 6.318648 CCAAAACACATAGCCTAATAGCTTGA 59.681 38.462 0.00 0.00 41.41 3.02
5156 7211 6.460123 CCCAAAACACATAGCCTAATAGCTTG 60.460 42.308 0.00 0.00 41.41 4.01
5157 7212 5.594317 CCCAAAACACATAGCCTAATAGCTT 59.406 40.000 0.00 0.00 41.41 3.74
5159 7214 4.261614 GCCCAAAACACATAGCCTAATAGC 60.262 45.833 0.00 0.00 0.00 2.97
5160 7215 4.887071 TGCCCAAAACACATAGCCTAATAG 59.113 41.667 0.00 0.00 0.00 1.73
5161 7216 4.861196 TGCCCAAAACACATAGCCTAATA 58.139 39.130 0.00 0.00 0.00 0.98
5162 7217 3.707316 TGCCCAAAACACATAGCCTAAT 58.293 40.909 0.00 0.00 0.00 1.73
5163 7218 3.162147 TGCCCAAAACACATAGCCTAA 57.838 42.857 0.00 0.00 0.00 2.69
5164 7219 2.889170 TGCCCAAAACACATAGCCTA 57.111 45.000 0.00 0.00 0.00 3.93
5165 7220 1.826720 CATGCCCAAAACACATAGCCT 59.173 47.619 0.00 0.00 0.00 4.58
5166 7221 1.740043 GCATGCCCAAAACACATAGCC 60.740 52.381 6.36 0.00 0.00 3.93
5167 7222 1.205417 AGCATGCCCAAAACACATAGC 59.795 47.619 15.66 0.00 0.00 2.97
5168 7223 2.417651 CCAGCATGCCCAAAACACATAG 60.418 50.000 15.66 0.00 31.97 2.23
5169 7224 1.549620 CCAGCATGCCCAAAACACATA 59.450 47.619 15.66 0.00 31.97 2.29
5170 7225 0.322322 CCAGCATGCCCAAAACACAT 59.678 50.000 15.66 0.00 31.97 3.21
5171 7226 1.747145 CCAGCATGCCCAAAACACA 59.253 52.632 15.66 0.00 31.97 3.72
5172 7227 1.668793 GCCAGCATGCCCAAAACAC 60.669 57.895 15.66 0.00 31.97 3.32
5173 7228 0.541530 TAGCCAGCATGCCCAAAACA 60.542 50.000 15.66 0.00 31.97 2.83
5174 7229 0.826062 ATAGCCAGCATGCCCAAAAC 59.174 50.000 15.66 0.00 31.97 2.43
5175 7230 0.825410 CATAGCCAGCATGCCCAAAA 59.175 50.000 15.66 0.00 31.97 2.44
5176 7231 0.324552 ACATAGCCAGCATGCCCAAA 60.325 50.000 15.66 0.00 31.97 3.28
5177 7232 1.038681 CACATAGCCAGCATGCCCAA 61.039 55.000 15.66 0.00 31.97 4.12
5178 7233 1.454295 CACATAGCCAGCATGCCCA 60.454 57.895 15.66 0.00 31.97 5.36
5179 7234 1.039233 AACACATAGCCAGCATGCCC 61.039 55.000 15.66 3.01 31.97 5.36
5180 7235 0.819582 AAACACATAGCCAGCATGCC 59.180 50.000 15.66 0.00 31.97 4.40
5181 7236 1.532505 CGAAACACATAGCCAGCATGC 60.533 52.381 10.51 10.51 31.97 4.06
5182 7237 1.064505 CCGAAACACATAGCCAGCATG 59.935 52.381 0.00 0.00 0.00 4.06
5183 7238 1.382522 CCGAAACACATAGCCAGCAT 58.617 50.000 0.00 0.00 0.00 3.79
5184 7239 0.676466 CCCGAAACACATAGCCAGCA 60.676 55.000 0.00 0.00 0.00 4.41
5185 7240 1.993369 GCCCGAAACACATAGCCAGC 61.993 60.000 0.00 0.00 0.00 4.85
5186 7241 1.376609 GGCCCGAAACACATAGCCAG 61.377 60.000 0.00 0.00 40.20 4.85
5187 7242 1.377987 GGCCCGAAACACATAGCCA 60.378 57.895 0.00 0.00 40.20 4.75
5188 7243 1.077716 AGGCCCGAAACACATAGCC 60.078 57.895 0.00 0.00 40.79 3.93
5189 7244 1.429148 CGAGGCCCGAAACACATAGC 61.429 60.000 0.00 0.00 41.76 2.97
5190 7245 0.108329 ACGAGGCCCGAAACACATAG 60.108 55.000 18.74 0.00 41.76 2.23
5191 7246 0.108520 GACGAGGCCCGAAACACATA 60.109 55.000 18.74 0.00 41.76 2.29
5192 7247 1.375523 GACGAGGCCCGAAACACAT 60.376 57.895 18.74 0.00 41.76 3.21
5193 7248 2.029964 GACGAGGCCCGAAACACA 59.970 61.111 18.74 0.00 41.76 3.72
5194 7249 3.110178 CGACGAGGCCCGAAACAC 61.110 66.667 18.74 5.48 41.76 3.32
5195 7250 4.367023 CCGACGAGGCCCGAAACA 62.367 66.667 18.74 0.00 41.76 2.83
5379 7434 3.767230 CAAGCACCGTCGTCGCTG 61.767 66.667 6.42 0.00 35.79 5.18
5382 7437 3.767230 CTGCAAGCACCGTCGTCG 61.767 66.667 0.00 0.00 0.00 5.12
5511 7566 1.684734 GGTCCAGAGGCCGGAACTA 60.685 63.158 5.05 0.00 37.27 2.24
5621 7677 6.319152 CAGATCGATTTATATACCCTCTCCGT 59.681 42.308 0.00 0.00 0.00 4.69
5707 7763 0.033090 GGACGGAAGAACCAAGACGT 59.967 55.000 0.00 0.00 38.90 4.34
5713 7769 1.364901 GACACGGACGGAAGAACCA 59.635 57.895 0.00 0.00 38.90 3.67
5724 7780 1.381327 GAGGGGATGAGGACACGGA 60.381 63.158 0.00 0.00 0.00 4.69
5765 7821 3.691342 CACCTCGGCGAAGGACCA 61.691 66.667 25.17 0.00 38.87 4.02
5973 8031 3.494626 CGCTTGTACTCTTCTTTCTTGCA 59.505 43.478 0.00 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.