Multiple sequence alignment - TraesCS7A01G265400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G265400 chr7A 100.000 4542 0 0 1 4542 265932546 265928005 0.000000e+00 8388.0
1 TraesCS7A01G265400 chr7A 91.667 264 16 2 3989 4250 265503812 265503553 1.200000e-95 361.0
2 TraesCS7A01G265400 chr7A 82.353 374 29 12 3562 3900 265504188 265503817 1.600000e-74 291.0
3 TraesCS7A01G265400 chr7A 93.642 173 11 0 3372 3544 265504636 265504464 4.510000e-65 259.0
4 TraesCS7A01G265400 chr7A 96.429 112 4 0 4431 4542 265503361 265503250 7.760000e-43 185.0
5 TraesCS7A01G265400 chr7B 94.219 3754 122 26 532 4247 225512845 225509149 0.000000e+00 5642.0
6 TraesCS7A01G265400 chr7B 96.296 2241 69 10 532 2763 225404585 225402350 0.000000e+00 3666.0
7 TraesCS7A01G265400 chr7B 91.083 1514 56 15 2757 4247 225393585 225392128 0.000000e+00 1975.0
8 TraesCS7A01G265400 chr7B 96.364 165 4 2 4087 4250 225392131 225391968 2.080000e-68 270.0
9 TraesCS7A01G265400 chr7B 96.319 163 4 2 4089 4250 225509150 225508989 2.690000e-67 267.0
10 TraesCS7A01G265400 chr7B 95.614 114 5 0 4429 4542 225391860 225391747 2.790000e-42 183.0
11 TraesCS7A01G265400 chr7B 95.614 114 5 0 4429 4542 225508881 225508768 2.790000e-42 183.0
12 TraesCS7A01G265400 chr7D 96.267 1634 38 14 1937 3564 248471725 248470109 0.000000e+00 2658.0
13 TraesCS7A01G265400 chr7D 96.985 1360 38 3 584 1941 248476692 248475334 0.000000e+00 2281.0
14 TraesCS7A01G265400 chr7D 86.690 849 58 23 3297 4115 247890609 247889786 0.000000e+00 891.0
15 TraesCS7A01G265400 chr7D 94.720 322 16 1 3572 3892 248469812 248469491 2.440000e-137 499.0
16 TraesCS7A01G265400 chr7D 86.256 422 53 4 10 428 248477185 248476766 1.930000e-123 453.0
17 TraesCS7A01G265400 chr7D 88.272 324 13 14 4132 4432 248468198 248467877 9.290000e-97 364.0
18 TraesCS7A01G265400 chr7D 92.432 185 7 1 3891 4068 248468874 248468690 1.620000e-64 257.0
19 TraesCS7A01G265400 chr7D 97.368 114 0 3 4431 4542 247885825 247885713 1.670000e-44 191.0
20 TraesCS7A01G265400 chr7D 95.536 112 5 0 4431 4542 248467767 248467656 3.610000e-41 180.0
21 TraesCS7A01G265400 chr7D 91.509 106 4 4 4150 4250 247886125 247886020 1.700000e-29 141.0
22 TraesCS7A01G265400 chr7D 95.652 46 2 0 4190 4235 247886023 247885978 1.750000e-09 75.0
23 TraesCS7A01G265400 chr5B 97.059 34 0 1 3882 3915 614459193 614459225 6.350000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G265400 chr7A 265928005 265932546 4541 True 8388.000000 8388 100.000000 1 4542 1 chr7A.!!$R1 4541
1 TraesCS7A01G265400 chr7A 265503250 265504636 1386 True 274.000000 361 91.022750 3372 4542 4 chr7A.!!$R2 1170
2 TraesCS7A01G265400 chr7B 225402350 225404585 2235 True 3666.000000 3666 96.296000 532 2763 1 chr7B.!!$R1 2231
3 TraesCS7A01G265400 chr7B 225508768 225512845 4077 True 2030.666667 5642 95.384000 532 4542 3 chr7B.!!$R3 4010
4 TraesCS7A01G265400 chr7B 225391747 225393585 1838 True 809.333333 1975 94.353667 2757 4542 3 chr7B.!!$R2 1785
5 TraesCS7A01G265400 chr7D 248467656 248477185 9529 True 956.000000 2658 92.924000 10 4542 7 chr7D.!!$R2 4532
6 TraesCS7A01G265400 chr7D 247885713 247890609 4896 True 324.500000 891 92.804750 3297 4542 4 chr7D.!!$R1 1245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 278 0.855349 CCGAAGTCGCTCACATATGC 59.145 55.0 1.58 0.00 38.18 3.14 F
1585 1640 0.037160 AGTGGGAAACGGCGGTTTAT 59.963 50.0 20.77 1.64 46.04 1.40 F
1790 1845 0.749818 TTGCTGCCGTTGTTTCTCCA 60.750 50.0 0.00 0.00 0.00 3.86 F
2339 6010 1.416243 ACCACTCACCAAGGACGTTA 58.584 50.0 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 1845 1.000896 GTACCCATGGGCAAGCTGT 60.001 57.895 31.73 12.05 39.32 4.40 R
2948 6629 0.588730 CGACAAACCACACAGCAACG 60.589 55.000 0.00 0.00 0.00 4.10 R
3259 6940 1.571773 GGACCCACCCCATGCTAAGT 61.572 60.000 0.00 0.00 0.00 2.24 R
4250 13152 1.603802 CAGTTCAACACCGCACTGAAT 59.396 47.619 0.00 0.00 39.25 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 102 2.515926 ATTCATGATCGGTCGTGGAG 57.484 50.000 17.64 0.00 40.93 3.86
112 114 1.264288 GTCGTGGAGCAAAAGAACCAG 59.736 52.381 0.00 0.00 32.89 4.00
114 116 1.264288 CGTGGAGCAAAAGAACCAGTC 59.736 52.381 0.00 0.00 32.89 3.51
121 123 5.108385 AGCAAAAGAACCAGTCATAAACG 57.892 39.130 0.00 0.00 0.00 3.60
125 127 6.567701 GCAAAAGAACCAGTCATAAACGATCA 60.568 38.462 0.00 0.00 0.00 2.92
160 162 4.060038 ACAAAGACAGAACATCAGACGT 57.940 40.909 0.00 0.00 0.00 4.34
163 165 6.223852 ACAAAGACAGAACATCAGACGTATT 58.776 36.000 0.00 0.00 0.00 1.89
171 173 7.116948 ACAGAACATCAGACGTATTTCTTTCAG 59.883 37.037 0.00 0.00 0.00 3.02
216 218 3.503748 CCTTACCTTCAACTTTCAGCAGG 59.496 47.826 0.00 0.00 0.00 4.85
225 227 2.949447 ACTTTCAGCAGGGACATGTTT 58.051 42.857 0.00 0.00 0.00 2.83
227 229 1.909700 TTCAGCAGGGACATGTTTCC 58.090 50.000 0.00 5.39 34.52 3.13
235 237 4.751060 CAGGGACATGTTTCCATCAAATG 58.249 43.478 17.74 5.95 37.40 2.32
236 238 4.463539 CAGGGACATGTTTCCATCAAATGA 59.536 41.667 17.74 0.00 37.40 2.57
275 277 2.209838 ACCGAAGTCGCTCACATATG 57.790 50.000 0.00 0.00 38.18 1.78
276 278 0.855349 CCGAAGTCGCTCACATATGC 59.145 55.000 1.58 0.00 38.18 3.14
277 279 1.559831 CGAAGTCGCTCACATATGCA 58.440 50.000 1.58 0.00 0.00 3.96
283 285 9.084666 CCGAAGTCGCTCACATATGCATATATG 62.085 44.444 18.70 17.94 43.21 1.78
327 329 9.363763 ACACATCATATTTCTATAAGCATCTCG 57.636 33.333 0.00 0.00 0.00 4.04
329 331 7.984050 ACATCATATTTCTATAAGCATCTCGGG 59.016 37.037 0.00 0.00 0.00 5.14
332 334 4.602340 TTTCTATAAGCATCTCGGGGAC 57.398 45.455 0.00 0.00 0.00 4.46
340 342 1.987855 ATCTCGGGGACTTTGCCGA 60.988 57.895 0.00 0.00 0.00 5.54
343 345 3.047877 CGGGGACTTTGCCGACAC 61.048 66.667 0.00 0.00 0.00 3.67
374 378 7.575414 TTAAGATTGACAAAGCCACTACAAA 57.425 32.000 0.00 0.00 0.00 2.83
376 380 3.684103 TTGACAAAGCCACTACAAACG 57.316 42.857 0.00 0.00 0.00 3.60
400 404 6.861572 CGTCTTGTAGTCAACAGAAACATCTA 59.138 38.462 0.00 0.00 39.87 1.98
403 407 8.082852 TCTTGTAGTCAACAGAAACATCTACTC 58.917 37.037 0.00 0.00 39.87 2.59
404 408 6.688578 TGTAGTCAACAGAAACATCTACTCC 58.311 40.000 0.00 0.00 33.01 3.85
412 416 5.249393 ACAGAAACATCTACTCCCACTGAAT 59.751 40.000 0.00 0.00 0.00 2.57
422 426 3.055094 ACTCCCACTGAATAAACATCGCT 60.055 43.478 0.00 0.00 0.00 4.93
428 432 5.163723 CCACTGAATAAACATCGCTGAACAT 60.164 40.000 0.00 0.00 0.00 2.71
429 433 5.961843 CACTGAATAAACATCGCTGAACATC 59.038 40.000 0.00 0.00 0.00 3.06
430 434 5.065218 ACTGAATAAACATCGCTGAACATCC 59.935 40.000 0.00 0.00 0.00 3.51
432 436 5.065090 TGAATAAACATCGCTGAACATCCTG 59.935 40.000 0.00 0.00 0.00 3.86
436 440 3.614092 ACATCGCTGAACATCCTGAAAT 58.386 40.909 0.00 0.00 0.00 2.17
437 441 4.769688 ACATCGCTGAACATCCTGAAATA 58.230 39.130 0.00 0.00 0.00 1.40
438 442 5.185454 ACATCGCTGAACATCCTGAAATAA 58.815 37.500 0.00 0.00 0.00 1.40
440 444 4.191544 TCGCTGAACATCCTGAAATAAGG 58.808 43.478 0.00 0.00 38.84 2.69
450 454 5.528600 TCCTGAAATAAGGAATCCAACCA 57.471 39.130 0.61 0.00 43.57 3.67
451 455 6.091076 TCCTGAAATAAGGAATCCAACCAT 57.909 37.500 0.61 0.00 43.57 3.55
452 456 6.129179 TCCTGAAATAAGGAATCCAACCATC 58.871 40.000 0.61 0.00 43.57 3.51
453 457 6.068853 TCCTGAAATAAGGAATCCAACCATCT 60.069 38.462 0.61 0.00 43.57 2.90
454 458 6.040166 CCTGAAATAAGGAATCCAACCATCTG 59.960 42.308 0.61 0.00 40.02 2.90
455 459 6.730447 TGAAATAAGGAATCCAACCATCTGA 58.270 36.000 0.61 0.00 0.00 3.27
456 460 7.356680 TGAAATAAGGAATCCAACCATCTGAT 58.643 34.615 0.61 0.00 0.00 2.90
457 461 7.503566 TGAAATAAGGAATCCAACCATCTGATC 59.496 37.037 0.61 0.00 0.00 2.92
458 462 6.776887 ATAAGGAATCCAACCATCTGATCT 57.223 37.500 0.61 0.00 0.00 2.75
459 463 7.878621 ATAAGGAATCCAACCATCTGATCTA 57.121 36.000 0.61 0.00 0.00 1.98
460 464 5.822132 AGGAATCCAACCATCTGATCTAG 57.178 43.478 0.61 0.00 0.00 2.43
461 465 5.471424 AGGAATCCAACCATCTGATCTAGA 58.529 41.667 0.61 0.00 40.37 2.43
462 466 5.306678 AGGAATCCAACCATCTGATCTAGAC 59.693 44.000 0.61 0.00 38.49 2.59
463 467 5.306678 GGAATCCAACCATCTGATCTAGACT 59.693 44.000 0.00 0.00 38.49 3.24
464 468 6.418057 AATCCAACCATCTGATCTAGACTC 57.582 41.667 0.00 0.00 38.49 3.36
465 469 4.871822 TCCAACCATCTGATCTAGACTCA 58.128 43.478 0.00 0.00 38.49 3.41
466 470 4.646945 TCCAACCATCTGATCTAGACTCAC 59.353 45.833 0.00 0.00 38.49 3.51
467 471 4.648762 CCAACCATCTGATCTAGACTCACT 59.351 45.833 0.00 0.00 38.49 3.41
468 472 5.128499 CCAACCATCTGATCTAGACTCACTT 59.872 44.000 0.00 0.00 38.49 3.16
469 473 6.272318 CAACCATCTGATCTAGACTCACTTC 58.728 44.000 0.00 0.00 38.49 3.01
470 474 4.578516 ACCATCTGATCTAGACTCACTTCG 59.421 45.833 0.00 0.00 38.49 3.79
471 475 4.536065 CATCTGATCTAGACTCACTTCGC 58.464 47.826 0.00 0.00 38.49 4.70
472 476 3.879998 TCTGATCTAGACTCACTTCGCT 58.120 45.455 0.00 0.00 0.00 4.93
473 477 3.874543 TCTGATCTAGACTCACTTCGCTC 59.125 47.826 0.00 0.00 0.00 5.03
474 478 2.946329 TGATCTAGACTCACTTCGCTCC 59.054 50.000 0.00 0.00 0.00 4.70
475 479 2.791347 TCTAGACTCACTTCGCTCCT 57.209 50.000 0.00 0.00 0.00 3.69
476 480 3.908643 TCTAGACTCACTTCGCTCCTA 57.091 47.619 0.00 0.00 0.00 2.94
477 481 4.425180 TCTAGACTCACTTCGCTCCTAT 57.575 45.455 0.00 0.00 0.00 2.57
478 482 4.382291 TCTAGACTCACTTCGCTCCTATC 58.618 47.826 0.00 0.00 0.00 2.08
479 483 3.006112 AGACTCACTTCGCTCCTATCA 57.994 47.619 0.00 0.00 0.00 2.15
480 484 3.357203 AGACTCACTTCGCTCCTATCAA 58.643 45.455 0.00 0.00 0.00 2.57
481 485 3.764434 AGACTCACTTCGCTCCTATCAAA 59.236 43.478 0.00 0.00 0.00 2.69
482 486 4.404073 AGACTCACTTCGCTCCTATCAAAT 59.596 41.667 0.00 0.00 0.00 2.32
483 487 4.437239 ACTCACTTCGCTCCTATCAAATG 58.563 43.478 0.00 0.00 0.00 2.32
484 488 4.081420 ACTCACTTCGCTCCTATCAAATGT 60.081 41.667 0.00 0.00 0.00 2.71
485 489 4.832248 TCACTTCGCTCCTATCAAATGTT 58.168 39.130 0.00 0.00 0.00 2.71
486 490 5.245531 TCACTTCGCTCCTATCAAATGTTT 58.754 37.500 0.00 0.00 0.00 2.83
487 491 5.705441 TCACTTCGCTCCTATCAAATGTTTT 59.295 36.000 0.00 0.00 0.00 2.43
488 492 6.876789 TCACTTCGCTCCTATCAAATGTTTTA 59.123 34.615 0.00 0.00 0.00 1.52
489 493 6.961554 CACTTCGCTCCTATCAAATGTTTTAC 59.038 38.462 0.00 0.00 0.00 2.01
490 494 6.093633 ACTTCGCTCCTATCAAATGTTTTACC 59.906 38.462 0.00 0.00 0.00 2.85
491 495 4.879545 TCGCTCCTATCAAATGTTTTACCC 59.120 41.667 0.00 0.00 0.00 3.69
492 496 4.881850 CGCTCCTATCAAATGTTTTACCCT 59.118 41.667 0.00 0.00 0.00 4.34
493 497 5.220854 CGCTCCTATCAAATGTTTTACCCTG 60.221 44.000 0.00 0.00 0.00 4.45
494 498 5.450550 GCTCCTATCAAATGTTTTACCCTGC 60.451 44.000 0.00 0.00 0.00 4.85
495 499 4.953579 TCCTATCAAATGTTTTACCCTGCC 59.046 41.667 0.00 0.00 0.00 4.85
496 500 4.956075 CCTATCAAATGTTTTACCCTGCCT 59.044 41.667 0.00 0.00 0.00 4.75
497 501 5.422012 CCTATCAAATGTTTTACCCTGCCTT 59.578 40.000 0.00 0.00 0.00 4.35
498 502 6.605594 CCTATCAAATGTTTTACCCTGCCTTA 59.394 38.462 0.00 0.00 0.00 2.69
499 503 5.975693 TCAAATGTTTTACCCTGCCTTAG 57.024 39.130 0.00 0.00 0.00 2.18
500 504 4.770010 TCAAATGTTTTACCCTGCCTTAGG 59.230 41.667 0.00 0.00 46.88 2.69
512 516 3.543665 CTGCCTTAGGACGTCTAGTAGT 58.456 50.000 16.46 0.00 0.00 2.73
513 517 4.701765 CTGCCTTAGGACGTCTAGTAGTA 58.298 47.826 16.46 1.10 0.00 1.82
514 518 4.701765 TGCCTTAGGACGTCTAGTAGTAG 58.298 47.826 16.46 0.00 0.00 2.57
515 519 4.064388 GCCTTAGGACGTCTAGTAGTAGG 58.936 52.174 16.46 12.81 0.00 3.18
516 520 4.202305 GCCTTAGGACGTCTAGTAGTAGGA 60.202 50.000 16.46 0.00 0.00 2.94
517 521 5.512921 GCCTTAGGACGTCTAGTAGTAGGAT 60.513 48.000 16.46 0.00 0.00 3.24
518 522 6.295575 GCCTTAGGACGTCTAGTAGTAGGATA 60.296 46.154 16.46 0.00 0.00 2.59
519 523 7.581270 GCCTTAGGACGTCTAGTAGTAGGATAT 60.581 44.444 16.46 0.00 0.00 1.63
520 524 8.320617 CCTTAGGACGTCTAGTAGTAGGATATT 58.679 40.741 16.46 0.00 0.00 1.28
521 525 9.723601 CTTAGGACGTCTAGTAGTAGGATATTT 57.276 37.037 16.46 0.00 0.00 1.40
536 540 9.720769 AGTAGGATATTTAAATACGGGAACATG 57.279 33.333 10.07 0.00 0.00 3.21
537 541 9.715121 GTAGGATATTTAAATACGGGAACATGA 57.285 33.333 10.07 0.00 0.00 3.07
539 543 9.063615 AGGATATTTAAATACGGGAACATGAAC 57.936 33.333 10.07 0.00 0.00 3.18
540 544 8.013378 GGATATTTAAATACGGGAACATGAACG 58.987 37.037 10.07 0.37 0.00 3.95
541 545 5.548706 TTTAAATACGGGAACATGAACGG 57.451 39.130 0.00 0.00 0.00 4.44
542 546 3.337694 AAATACGGGAACATGAACGGA 57.662 42.857 0.00 0.00 0.00 4.69
559 563 5.584649 TGAACGGAGGCTATTTGTAAGATTG 59.415 40.000 0.00 0.00 0.00 2.67
569 573 7.010460 GGCTATTTGTAAGATTGAAACAATGCC 59.990 37.037 1.64 0.00 37.28 4.40
596 648 7.881751 AGGGTGTTAGTTTGTAAAAGAGATACC 59.118 37.037 0.00 0.00 0.00 2.73
793 847 0.942252 GTCTCCCGCTGTTTCGTTTT 59.058 50.000 0.00 0.00 0.00 2.43
900 954 4.316205 TTTCTGAAGTTGCGACTAGTCA 57.684 40.909 22.37 7.65 34.21 3.41
1131 1185 3.094572 CAATGTGAGGATTTCTTGCCCT 58.905 45.455 0.00 0.00 0.00 5.19
1160 1214 2.351738 GGGTTTGTGATTGTGCAGTAGC 60.352 50.000 0.00 0.00 42.57 3.58
1181 1235 1.907255 ACTAACTAGTGGGGCAGGAAC 59.093 52.381 0.00 0.00 34.72 3.62
1297 1351 5.746284 TGATGTACGGGAATTGTGGATTTA 58.254 37.500 0.00 0.00 0.00 1.40
1369 1423 2.778299 TCAGTATTGTGGTGGCTGTTC 58.222 47.619 0.00 0.00 0.00 3.18
1370 1424 2.105649 TCAGTATTGTGGTGGCTGTTCA 59.894 45.455 0.00 0.00 0.00 3.18
1495 1550 5.469479 ACAGTTTGTTTCCTTCAACTGTTG 58.531 37.500 14.24 14.24 35.69 3.33
1575 1630 2.941064 GACGGGCTTAATAGTGGGAAAC 59.059 50.000 0.00 0.00 0.00 2.78
1585 1640 0.037160 AGTGGGAAACGGCGGTTTAT 59.963 50.000 20.77 1.64 46.04 1.40
1658 1713 9.670442 TTATGGTACTATCTTCATCTTAAGGGT 57.330 33.333 1.85 0.00 0.00 4.34
1659 1714 7.361457 TGGTACTATCTTCATCTTAAGGGTG 57.639 40.000 1.85 2.71 0.00 4.61
1790 1845 0.749818 TTGCTGCCGTTGTTTCTCCA 60.750 50.000 0.00 0.00 0.00 3.86
1950 5618 4.466015 TGGAAATTTTGTAGCCATCCCTTC 59.534 41.667 0.00 0.00 0.00 3.46
2024 5692 8.250332 TCTGTTTTAAGAACTGAAATGCTTTGT 58.750 29.630 0.00 0.00 0.00 2.83
2025 5693 8.183830 TGTTTTAAGAACTGAAATGCTTTGTG 57.816 30.769 0.00 0.00 0.00 3.33
2075 5743 4.931601 CACAGTTGCTTAGCAGAGAATGTA 59.068 41.667 7.08 0.00 40.61 2.29
2076 5744 5.409520 CACAGTTGCTTAGCAGAGAATGTAA 59.590 40.000 7.08 0.00 40.61 2.41
2077 5745 5.409826 ACAGTTGCTTAGCAGAGAATGTAAC 59.590 40.000 7.08 0.00 40.61 2.50
2078 5746 4.938226 AGTTGCTTAGCAGAGAATGTAACC 59.062 41.667 7.08 0.00 40.61 2.85
2080 5748 5.102953 TGCTTAGCAGAGAATGTAACCAT 57.897 39.130 1.39 0.00 33.32 3.55
2335 6006 2.158726 TGGTTTACCACTCACCAAGGAC 60.159 50.000 0.00 0.00 42.01 3.85
2339 6010 1.416243 ACCACTCACCAAGGACGTTA 58.584 50.000 0.00 0.00 0.00 3.18
2690 6365 9.019656 TGGGGACACATGTAATTAAATATATGC 57.980 33.333 0.00 0.00 33.40 3.14
2718 6393 7.282585 TCTCTTAATGTTGAAGGGGACATATG 58.717 38.462 0.00 0.00 35.55 1.78
2733 6408 6.294508 GGGGACATATGTGCACCATAATAAAC 60.295 42.308 26.11 6.51 39.43 2.01
2948 6629 6.365839 CGCCATTCTCATGTTATACACATTC 58.634 40.000 0.00 0.00 44.40 2.67
3050 6731 6.590292 CCAGTAGATGTAGTAACAGTTGGTTG 59.410 42.308 0.00 0.00 40.73 3.77
3259 6940 2.669569 GCAGCCTTCGCCTCAACA 60.670 61.111 0.00 0.00 34.57 3.33
3272 6953 1.004745 CCTCAACACTTAGCATGGGGT 59.995 52.381 0.00 0.00 0.00 4.95
3513 7195 5.586643 ACAAGTTCACTGAGAGGAAAAAGAC 59.413 40.000 0.00 0.00 0.00 3.01
3516 7198 5.104735 AGTTCACTGAGAGGAAAAAGACTGT 60.105 40.000 0.00 0.00 0.00 3.55
3576 7783 3.309296 CAAACCCTCTATCCCTAGCTCA 58.691 50.000 0.00 0.00 0.00 4.26
3645 7852 4.702131 AGAACAGATTCGCTATTTTGGCTT 59.298 37.500 0.00 0.00 40.04 4.35
3714 7949 2.224646 TGGAACACGAATTGATGGACCA 60.225 45.455 0.00 0.00 0.00 4.02
3749 7984 5.448654 TGGATCCATCTTGGTTTAGAATGG 58.551 41.667 11.44 0.00 39.03 3.16
3784 8020 7.201884 GCTAGTGATATGGACTGTACCTGTTAA 60.202 40.741 0.00 0.00 0.00 2.01
3840 8077 6.086222 GTGCCACAGTTATCACATTTACTTG 58.914 40.000 0.00 0.00 0.00 3.16
3872 8109 8.064336 ACTGTAACTTATACTACCTCTGTTGG 57.936 38.462 0.00 0.00 0.00 3.77
3918 8777 5.484715 TGAACGGAGGGAGTAACAATTAAG 58.515 41.667 0.00 0.00 0.00 1.85
4057 8928 4.684134 CCACCCCAGCCCCAACAG 62.684 72.222 0.00 0.00 0.00 3.16
4277 13179 2.223456 TGCGGTGTTGAACTGTGAAATG 60.223 45.455 0.00 0.00 37.49 2.32
4304 13206 6.512297 CCTAGTAATGCTTGGTGTTGTTTTT 58.488 36.000 0.00 0.00 35.74 1.94
4305 13207 7.653647 CCTAGTAATGCTTGGTGTTGTTTTTA 58.346 34.615 0.00 0.00 35.74 1.52
4306 13208 7.593644 CCTAGTAATGCTTGGTGTTGTTTTTAC 59.406 37.037 0.00 0.00 35.74 2.01
4307 13209 7.107639 AGTAATGCTTGGTGTTGTTTTTACT 57.892 32.000 0.00 0.00 0.00 2.24
4314 13220 8.254508 TGCTTGGTGTTGTTTTTACTAAATTCT 58.745 29.630 0.00 0.00 0.00 2.40
4318 13224 8.524487 TGGTGTTGTTTTTACTAAATTCTGTGT 58.476 29.630 0.00 0.00 0.00 3.72
4326 13232 6.774354 TTACTAAATTCTGTGTGACGTTCC 57.226 37.500 0.00 0.00 0.00 3.62
4349 13262 1.370051 GGACGTTTTGCCAGCGAAC 60.370 57.895 0.00 0.00 0.00 3.95
4427 13487 1.884235 ACGCTTGAAGGAAGGAACTG 58.116 50.000 0.00 0.00 40.86 3.16
4515 13577 5.994177 AGAAGGTTCTCATACCACCAGGTAA 60.994 44.000 0.00 0.00 42.98 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 9.566432 TTTGTAAATTGCCATATTTCCACTTTT 57.434 25.926 0.00 0.00 0.00 2.27
71 73 6.966632 ACGACCGATCATGAATTTGTAAATTG 59.033 34.615 0.00 0.00 38.64 2.32
100 102 5.103290 TCGTTTATGACTGGTTCTTTTGC 57.897 39.130 0.00 0.00 0.00 3.68
148 150 7.582435 TCTGAAAGAAATACGTCTGATGTTC 57.418 36.000 7.97 0.06 42.31 3.18
181 183 9.990868 AGTTGAAGGTAAGGATATTAAACCAAT 57.009 29.630 0.00 0.00 32.43 3.16
195 197 3.503748 CCCTGCTGAAAGTTGAAGGTAAG 59.496 47.826 0.00 0.00 35.30 2.34
202 204 2.158623 ACATGTCCCTGCTGAAAGTTGA 60.159 45.455 0.00 0.00 35.30 3.18
210 212 3.344703 TGGAAACATGTCCCTGCTG 57.655 52.632 15.59 0.00 36.80 4.41
243 245 5.490213 GCGACTTCGGTTGTATTGAATTAG 58.510 41.667 0.02 0.00 40.23 1.73
257 259 0.855349 GCATATGTGAGCGACTTCGG 59.145 55.000 4.29 0.00 40.23 4.30
275 277 8.890124 ATTCATAGAGATGAGTGCATATATGC 57.110 34.615 27.45 27.45 46.85 3.14
283 285 7.150640 TGATGTGTATTCATAGAGATGAGTGC 58.849 38.462 0.00 0.00 43.03 4.40
301 303 9.363763 CGAGATGCTTATAGAAATATGATGTGT 57.636 33.333 0.00 0.00 0.00 3.72
326 328 3.047877 GTGTCGGCAAAGTCCCCG 61.048 66.667 0.00 0.00 45.64 5.73
327 329 0.893727 AATGTGTCGGCAAAGTCCCC 60.894 55.000 0.00 0.00 0.00 4.81
329 331 4.434713 AAATAATGTGTCGGCAAAGTCC 57.565 40.909 0.00 0.00 0.00 3.85
332 334 8.586273 CAATCTTAAAATAATGTGTCGGCAAAG 58.414 33.333 0.00 0.00 0.00 2.77
340 342 9.423061 GGCTTTGTCAATCTTAAAATAATGTGT 57.577 29.630 0.00 0.00 0.00 3.72
343 345 9.643693 AGTGGCTTTGTCAATCTTAAAATAATG 57.356 29.630 0.00 0.00 0.00 1.90
374 378 4.751060 TGTTTCTGTTGACTACAAGACGT 58.249 39.130 0.00 0.00 36.02 4.34
376 380 7.868415 AGTAGATGTTTCTGTTGACTACAAGAC 59.132 37.037 0.00 0.00 36.02 3.01
390 394 7.496346 TTATTCAGTGGGAGTAGATGTTTCT 57.504 36.000 0.00 0.00 35.90 2.52
400 404 3.055094 AGCGATGTTTATTCAGTGGGAGT 60.055 43.478 0.00 0.00 0.00 3.85
403 407 3.270027 TCAGCGATGTTTATTCAGTGGG 58.730 45.455 0.00 0.00 0.00 4.61
404 408 4.154015 TGTTCAGCGATGTTTATTCAGTGG 59.846 41.667 0.00 0.00 0.00 4.00
412 416 4.200838 TCAGGATGTTCAGCGATGTTTA 57.799 40.909 0.00 0.00 37.40 2.01
422 426 6.730447 TGGATTCCTTATTTCAGGATGTTCA 58.270 36.000 3.95 0.00 42.89 3.18
428 432 5.528600 TGGTTGGATTCCTTATTTCAGGA 57.471 39.130 3.95 0.00 41.60 3.86
429 433 6.040166 CAGATGGTTGGATTCCTTATTTCAGG 59.960 42.308 3.95 0.00 34.86 3.86
430 434 6.830324 TCAGATGGTTGGATTCCTTATTTCAG 59.170 38.462 3.95 0.00 0.00 3.02
432 436 7.723172 AGATCAGATGGTTGGATTCCTTATTTC 59.277 37.037 3.95 0.00 0.00 2.17
436 440 7.015682 GTCTAGATCAGATGGTTGGATTCCTTA 59.984 40.741 3.95 0.00 35.17 2.69
437 441 5.907662 TCTAGATCAGATGGTTGGATTCCTT 59.092 40.000 3.95 0.00 0.00 3.36
438 442 5.306678 GTCTAGATCAGATGGTTGGATTCCT 59.693 44.000 3.95 0.00 35.17 3.36
440 444 6.041409 TGAGTCTAGATCAGATGGTTGGATTC 59.959 42.308 0.00 0.00 35.17 2.52
441 445 5.901853 TGAGTCTAGATCAGATGGTTGGATT 59.098 40.000 0.00 0.00 35.17 3.01
442 446 5.304101 GTGAGTCTAGATCAGATGGTTGGAT 59.696 44.000 0.00 0.00 35.17 3.41
443 447 4.646945 GTGAGTCTAGATCAGATGGTTGGA 59.353 45.833 0.00 0.00 35.17 3.53
444 448 4.648762 AGTGAGTCTAGATCAGATGGTTGG 59.351 45.833 0.00 0.00 35.17 3.77
445 449 5.850557 AGTGAGTCTAGATCAGATGGTTG 57.149 43.478 0.00 0.00 35.17 3.77
446 450 5.067153 CGAAGTGAGTCTAGATCAGATGGTT 59.933 44.000 0.00 0.00 35.17 3.67
447 451 4.578516 CGAAGTGAGTCTAGATCAGATGGT 59.421 45.833 0.00 0.00 35.17 3.55
448 452 4.556501 GCGAAGTGAGTCTAGATCAGATGG 60.557 50.000 0.00 0.00 35.17 3.51
449 453 4.275689 AGCGAAGTGAGTCTAGATCAGATG 59.724 45.833 0.00 0.00 35.17 2.90
450 454 4.460263 AGCGAAGTGAGTCTAGATCAGAT 58.540 43.478 0.00 0.00 35.17 2.90
451 455 3.874543 GAGCGAAGTGAGTCTAGATCAGA 59.125 47.826 0.00 0.00 0.00 3.27
452 456 3.003275 GGAGCGAAGTGAGTCTAGATCAG 59.997 52.174 0.00 0.00 0.00 2.90
453 457 2.946329 GGAGCGAAGTGAGTCTAGATCA 59.054 50.000 0.00 0.00 0.00 2.92
454 458 3.211045 AGGAGCGAAGTGAGTCTAGATC 58.789 50.000 0.00 0.00 0.00 2.75
455 459 3.290948 AGGAGCGAAGTGAGTCTAGAT 57.709 47.619 0.00 0.00 0.00 1.98
456 460 2.791347 AGGAGCGAAGTGAGTCTAGA 57.209 50.000 0.00 0.00 0.00 2.43
457 461 4.130857 TGATAGGAGCGAAGTGAGTCTAG 58.869 47.826 0.00 0.00 0.00 2.43
458 462 4.152284 TGATAGGAGCGAAGTGAGTCTA 57.848 45.455 0.00 0.00 0.00 2.59
459 463 3.006112 TGATAGGAGCGAAGTGAGTCT 57.994 47.619 0.00 0.00 0.00 3.24
460 464 3.784701 TTGATAGGAGCGAAGTGAGTC 57.215 47.619 0.00 0.00 0.00 3.36
461 465 4.081420 ACATTTGATAGGAGCGAAGTGAGT 60.081 41.667 0.00 0.00 0.00 3.41
462 466 4.437239 ACATTTGATAGGAGCGAAGTGAG 58.563 43.478 0.00 0.00 0.00 3.51
463 467 4.471904 ACATTTGATAGGAGCGAAGTGA 57.528 40.909 0.00 0.00 0.00 3.41
464 468 5.551760 AAACATTTGATAGGAGCGAAGTG 57.448 39.130 0.00 0.00 0.00 3.16
465 469 6.093633 GGTAAAACATTTGATAGGAGCGAAGT 59.906 38.462 0.00 0.00 0.00 3.01
466 470 6.458342 GGGTAAAACATTTGATAGGAGCGAAG 60.458 42.308 0.00 0.00 0.00 3.79
467 471 5.355910 GGGTAAAACATTTGATAGGAGCGAA 59.644 40.000 0.00 0.00 0.00 4.70
468 472 4.879545 GGGTAAAACATTTGATAGGAGCGA 59.120 41.667 0.00 0.00 0.00 4.93
469 473 4.881850 AGGGTAAAACATTTGATAGGAGCG 59.118 41.667 0.00 0.00 0.00 5.03
470 474 5.450550 GCAGGGTAAAACATTTGATAGGAGC 60.451 44.000 0.00 0.00 0.00 4.70
471 475 5.067805 GGCAGGGTAAAACATTTGATAGGAG 59.932 44.000 0.00 0.00 0.00 3.69
472 476 4.953579 GGCAGGGTAAAACATTTGATAGGA 59.046 41.667 0.00 0.00 0.00 2.94
473 477 4.956075 AGGCAGGGTAAAACATTTGATAGG 59.044 41.667 0.00 0.00 0.00 2.57
474 478 6.530019 AAGGCAGGGTAAAACATTTGATAG 57.470 37.500 0.00 0.00 0.00 2.08
475 479 6.605594 CCTAAGGCAGGGTAAAACATTTGATA 59.394 38.462 0.00 0.00 41.26 2.15
476 480 5.422012 CCTAAGGCAGGGTAAAACATTTGAT 59.578 40.000 0.00 0.00 41.26 2.57
477 481 4.770010 CCTAAGGCAGGGTAAAACATTTGA 59.230 41.667 0.00 0.00 41.26 2.69
478 482 4.770010 TCCTAAGGCAGGGTAAAACATTTG 59.230 41.667 0.00 0.00 45.58 2.32
479 483 4.770531 GTCCTAAGGCAGGGTAAAACATTT 59.229 41.667 0.00 0.00 45.58 2.32
480 484 4.341487 GTCCTAAGGCAGGGTAAAACATT 58.659 43.478 0.00 0.00 45.58 2.71
481 485 3.621461 CGTCCTAAGGCAGGGTAAAACAT 60.621 47.826 0.00 0.00 45.58 2.71
482 486 2.289819 CGTCCTAAGGCAGGGTAAAACA 60.290 50.000 0.00 0.00 45.58 2.83
483 487 2.289882 ACGTCCTAAGGCAGGGTAAAAC 60.290 50.000 0.00 0.00 45.58 2.43
484 488 1.980036 ACGTCCTAAGGCAGGGTAAAA 59.020 47.619 0.00 0.00 45.58 1.52
485 489 1.551883 GACGTCCTAAGGCAGGGTAAA 59.448 52.381 3.51 0.00 45.58 2.01
486 490 1.188863 GACGTCCTAAGGCAGGGTAA 58.811 55.000 3.51 0.00 45.58 2.85
487 491 0.333993 AGACGTCCTAAGGCAGGGTA 59.666 55.000 13.01 0.00 45.58 3.69
488 492 0.333993 TAGACGTCCTAAGGCAGGGT 59.666 55.000 13.01 0.00 45.58 4.34
489 493 1.033574 CTAGACGTCCTAAGGCAGGG 58.966 60.000 13.01 0.00 45.58 4.45
491 495 3.543665 ACTACTAGACGTCCTAAGGCAG 58.456 50.000 13.01 11.10 0.00 4.85
492 496 3.641434 ACTACTAGACGTCCTAAGGCA 57.359 47.619 13.01 0.00 0.00 4.75
493 497 4.064388 CCTACTACTAGACGTCCTAAGGC 58.936 52.174 13.01 0.00 0.00 4.35
494 498 5.543507 TCCTACTACTAGACGTCCTAAGG 57.456 47.826 13.01 9.76 0.00 2.69
495 499 9.723601 AAATATCCTACTACTAGACGTCCTAAG 57.276 37.037 13.01 10.16 0.00 2.18
510 514 9.720769 CATGTTCCCGTATTTAAATATCCTACT 57.279 33.333 11.00 0.00 0.00 2.57
511 515 9.715121 TCATGTTCCCGTATTTAAATATCCTAC 57.285 33.333 11.00 7.15 0.00 3.18
513 517 9.063615 GTTCATGTTCCCGTATTTAAATATCCT 57.936 33.333 11.00 0.00 0.00 3.24
514 518 8.013378 CGTTCATGTTCCCGTATTTAAATATCC 58.987 37.037 11.00 0.00 0.00 2.59
515 519 8.013378 CCGTTCATGTTCCCGTATTTAAATATC 58.987 37.037 11.00 4.87 0.00 1.63
516 520 7.716123 TCCGTTCATGTTCCCGTATTTAAATAT 59.284 33.333 11.00 0.00 0.00 1.28
517 521 7.046652 TCCGTTCATGTTCCCGTATTTAAATA 58.953 34.615 3.71 3.71 0.00 1.40
518 522 5.881443 TCCGTTCATGTTCCCGTATTTAAAT 59.119 36.000 5.89 5.89 0.00 1.40
519 523 5.243981 TCCGTTCATGTTCCCGTATTTAAA 58.756 37.500 0.00 0.00 0.00 1.52
520 524 4.829968 TCCGTTCATGTTCCCGTATTTAA 58.170 39.130 0.00 0.00 0.00 1.52
521 525 4.435425 CTCCGTTCATGTTCCCGTATTTA 58.565 43.478 0.00 0.00 0.00 1.40
522 526 3.267483 CTCCGTTCATGTTCCCGTATTT 58.733 45.455 0.00 0.00 0.00 1.40
523 527 2.419574 CCTCCGTTCATGTTCCCGTATT 60.420 50.000 0.00 0.00 0.00 1.89
524 528 1.138266 CCTCCGTTCATGTTCCCGTAT 59.862 52.381 0.00 0.00 0.00 3.06
525 529 0.533491 CCTCCGTTCATGTTCCCGTA 59.467 55.000 0.00 0.00 0.00 4.02
526 530 1.295423 CCTCCGTTCATGTTCCCGT 59.705 57.895 0.00 0.00 0.00 5.28
527 531 2.106683 GCCTCCGTTCATGTTCCCG 61.107 63.158 0.00 0.00 0.00 5.14
528 532 0.539986 TAGCCTCCGTTCATGTTCCC 59.460 55.000 0.00 0.00 0.00 3.97
529 533 2.622064 ATAGCCTCCGTTCATGTTCC 57.378 50.000 0.00 0.00 0.00 3.62
530 534 3.689649 ACAAATAGCCTCCGTTCATGTTC 59.310 43.478 0.00 0.00 0.00 3.18
531 535 3.686016 ACAAATAGCCTCCGTTCATGTT 58.314 40.909 0.00 0.00 0.00 2.71
532 536 3.350219 ACAAATAGCCTCCGTTCATGT 57.650 42.857 0.00 0.00 0.00 3.21
533 537 5.116180 TCTTACAAATAGCCTCCGTTCATG 58.884 41.667 0.00 0.00 0.00 3.07
534 538 5.353394 TCTTACAAATAGCCTCCGTTCAT 57.647 39.130 0.00 0.00 0.00 2.57
535 539 4.811969 TCTTACAAATAGCCTCCGTTCA 57.188 40.909 0.00 0.00 0.00 3.18
536 540 5.815740 TCAATCTTACAAATAGCCTCCGTTC 59.184 40.000 0.00 0.00 0.00 3.95
537 541 5.741011 TCAATCTTACAAATAGCCTCCGTT 58.259 37.500 0.00 0.00 0.00 4.44
538 542 5.353394 TCAATCTTACAAATAGCCTCCGT 57.647 39.130 0.00 0.00 0.00 4.69
539 543 6.093495 TGTTTCAATCTTACAAATAGCCTCCG 59.907 38.462 0.00 0.00 0.00 4.63
540 544 7.391148 TGTTTCAATCTTACAAATAGCCTCC 57.609 36.000 0.00 0.00 0.00 4.30
541 545 9.294030 CATTGTTTCAATCTTACAAATAGCCTC 57.706 33.333 0.00 0.00 35.62 4.70
542 546 7.761249 GCATTGTTTCAATCTTACAAATAGCCT 59.239 33.333 0.00 0.00 35.62 4.58
559 563 2.890945 ACTAACACCCTGGCATTGTTTC 59.109 45.455 12.70 0.00 35.18 2.78
569 573 7.745620 ATCTCTTTTACAAACTAACACCCTG 57.254 36.000 0.00 0.00 0.00 4.45
596 648 4.093703 CCGAAGAGACTGTAGACTGTAGTG 59.906 50.000 0.00 0.00 0.00 2.74
900 954 2.979678 TGAGAAACCCTAAGCCAAGTCT 59.020 45.455 0.00 0.00 0.00 3.24
956 1010 1.104577 TTCCGTTCACCAAAGCACCC 61.105 55.000 0.00 0.00 0.00 4.61
1131 1185 5.069648 TGCACAATCACAAACCCAGAATAAA 59.930 36.000 0.00 0.00 0.00 1.40
1181 1235 3.005554 AGAACACGATGCAATTCCTGAG 58.994 45.455 0.00 0.00 0.00 3.35
1369 1423 8.066595 GCTCATGAAATGTACAGCTAAGTAATG 58.933 37.037 0.33 0.00 46.80 1.90
1370 1424 7.227512 GGCTCATGAAATGTACAGCTAAGTAAT 59.772 37.037 0.33 0.00 46.80 1.89
1575 1630 2.261345 TGAAGTTACGATAAACCGCCG 58.739 47.619 0.00 0.00 0.00 6.46
1648 1703 8.218488 GGGACATATAAAGAACACCCTTAAGAT 58.782 37.037 3.36 0.00 33.99 2.40
1658 1713 5.692115 TCTGCAGGGACATATAAAGAACA 57.308 39.130 15.13 0.00 0.00 3.18
1659 1714 8.854614 AATATCTGCAGGGACATATAAAGAAC 57.145 34.615 15.13 0.00 0.00 3.01
1790 1845 1.000896 GTACCCATGGGCAAGCTGT 60.001 57.895 31.73 12.05 39.32 4.40
2018 5686 1.953686 TGGTAGAAGCCAACACAAAGC 59.046 47.619 0.00 0.00 35.25 3.51
2024 5692 3.181445 ACTTGACATGGTAGAAGCCAACA 60.181 43.478 0.00 0.00 42.48 3.33
2025 5693 3.412386 ACTTGACATGGTAGAAGCCAAC 58.588 45.455 0.00 0.00 42.48 3.77
2076 5744 9.267084 GGTTCAATACATAAAAACACAAATGGT 57.733 29.630 0.00 0.00 0.00 3.55
2077 5745 9.265901 TGGTTCAATACATAAAAACACAAATGG 57.734 29.630 0.00 0.00 0.00 3.16
2080 5748 9.743057 CTCTGGTTCAATACATAAAAACACAAA 57.257 29.630 0.00 0.00 0.00 2.83
2335 6006 9.666626 TTAACTAAAACACCATTGACAATAACG 57.333 29.630 0.00 0.00 0.00 3.18
2339 6010 8.245195 ACCTTAACTAAAACACCATTGACAAT 57.755 30.769 0.00 0.00 0.00 2.71
2690 6365 6.003950 TGTCCCCTTCAACATTAAGAGAAAG 58.996 40.000 0.00 0.00 0.00 2.62
2718 6393 9.458374 GTATGGTAATTGTTTATTATGGTGCAC 57.542 33.333 8.80 8.80 31.61 4.57
2747 6422 8.367911 AGGAAAGGAAAATCCAAAATGAGTAAC 58.632 33.333 0.00 0.00 39.61 2.50
2948 6629 0.588730 CGACAAACCACACAGCAACG 60.589 55.000 0.00 0.00 0.00 4.10
3259 6940 1.571773 GGACCCACCCCATGCTAAGT 61.572 60.000 0.00 0.00 0.00 2.24
3513 7195 4.550577 TTATCATTTGTATGCCGCACAG 57.449 40.909 0.00 0.00 0.00 3.66
3516 7198 4.397420 AGGATTATCATTTGTATGCCGCA 58.603 39.130 0.00 0.00 0.00 5.69
3613 7820 3.375299 AGCGAATCTGTTCTACCATTTGC 59.625 43.478 0.00 0.00 36.32 3.68
3714 7949 4.162040 GATGGATCCAGTGAAACCATCT 57.838 45.455 21.33 0.00 45.14 2.90
3749 7984 5.069251 AGTCCATATCACTAGCAGTACAACC 59.931 44.000 0.00 0.00 0.00 3.77
3784 8020 5.233476 CGTACGCAACCTACAACATATGAAT 59.767 40.000 10.38 0.00 0.00 2.57
3872 8109 9.982291 TTCATAATATAAGACGTTTTTGCAGTC 57.018 29.630 0.00 0.00 35.30 3.51
3918 8777 2.627515 TGATGAATCCACTAGGCAGC 57.372 50.000 0.00 0.00 33.74 5.25
4057 8928 3.546002 TGTTTAACGTAGCAACATGGC 57.454 42.857 0.00 0.00 0.00 4.40
4065 8936 3.000727 AGGAGTGCATGTTTAACGTAGC 58.999 45.455 0.00 0.00 0.00 3.58
4068 8939 4.809426 GCTATAGGAGTGCATGTTTAACGT 59.191 41.667 1.04 0.00 0.00 3.99
4250 13152 1.603802 CAGTTCAACACCGCACTGAAT 59.396 47.619 0.00 0.00 39.25 2.57
4277 13179 5.243207 ACAACACCAAGCATTACTAGGTAC 58.757 41.667 0.00 0.00 0.00 3.34
4304 13206 5.232463 GGGAACGTCACACAGAATTTAGTA 58.768 41.667 0.00 0.00 0.00 1.82
4305 13207 4.062991 GGGAACGTCACACAGAATTTAGT 58.937 43.478 0.00 0.00 0.00 2.24
4306 13208 3.435671 GGGGAACGTCACACAGAATTTAG 59.564 47.826 0.00 0.00 0.00 1.85
4307 13209 3.181453 TGGGGAACGTCACACAGAATTTA 60.181 43.478 0.00 0.00 0.00 1.40
4314 13220 2.813726 CCCTGGGGAACGTCACACA 61.814 63.158 4.27 0.00 37.50 3.72
4326 13232 2.203422 TGGCAAAACGTCCCTGGG 60.203 61.111 6.33 6.33 0.00 4.45
4349 13262 1.141657 AGATCGTGTGATTCATGGGGG 59.858 52.381 0.00 0.00 34.09 5.40
4409 13330 1.801178 GTCAGTTCCTTCCTTCAAGCG 59.199 52.381 0.00 0.00 0.00 4.68
4410 13331 2.851195 TGTCAGTTCCTTCCTTCAAGC 58.149 47.619 0.00 0.00 0.00 4.01
4413 13334 5.445069 TCAAAATGTCAGTTCCTTCCTTCA 58.555 37.500 0.00 0.00 0.00 3.02
4421 13342 6.173339 TCCTCTGTATCAAAATGTCAGTTCC 58.827 40.000 0.00 0.00 0.00 3.62
4427 13487 6.690194 ATGCTTCCTCTGTATCAAAATGTC 57.310 37.500 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.