AutoCloner

Multiple sequence alignment - TraesCS7A01G265300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G265300	chr7A	100.000	3078	0	0	1	3078	265925755	265928832	0.000000e+00	5685.0
1	TraesCS7A01G265300	chr7A	93.103	1566	57	18	804	2362	265501840	265503361	0.000000e+00	2246.0
2	TraesCS7A01G265300	chr7A	91.667	264	16	2	2543	2804	265503553	265503812	8.110000e-96	361.0
3	TraesCS7A01G265300	chr7A	89.637	193	10	6	2893	3077	265503817	265504007	1.430000e-58	237.0
4	TraesCS7A01G265300	chr7B	95.419	1768	64	10	609	2364	225507119	225508881	0.000000e+00	2800.0
5	TraesCS7A01G265300	chr7B	97.070	1570	38	4	800	2364	225390294	225391860	0.000000e+00	2638.0
6	TraesCS7A01G265300	chr7B	87.633	566	59	5	1	556	225388995	225389559	0.000000e+00	647.0
7	TraesCS7A01G265300	chr7B	87.633	566	59	5	1	556	225506314	225506878	0.000000e+00	647.0
8	TraesCS7A01G265300	chr7B	88.202	534	24	11	2546	3077	225509149	225509645	4.390000e-168	601.0
9	TraesCS7A01G265300	chr7B	87.453	534	22	9	2546	3077	225392128	225392618	9.570000e-160	573.0
10	TraesCS7A01G265300	chr7B	96.364	165	4	2	2543	2706	225391968	225392131	1.410000e-68	270.0
11	TraesCS7A01G265300	chr7B	96.319	163	4	2	2543	2704	225508989	225509150	1.820000e-67	267.0
12	TraesCS7A01G265300	chr7D	95.702	1559	51	3	805	2362	248466224	248467767	0.000000e+00	2494.0
13	TraesCS7A01G265300	chr7D	94.683	1373	54	11	805	2176	247883884	247885238	0.000000e+00	2113.0
14	TraesCS7A01G265300	chr7D	89.526	401	28	4	2678	3077	247889786	247890173	2.130000e-136	496.0
15	TraesCS7A01G265300	chr7D	88.272	324	13	14	2361	2661	248467877	248468198	6.270000e-97	364.0
16	TraesCS7A01G265300	chr7D	94.944	178	8	1	2901	3077	248469491	248469668	8.410000e-71	278.0
17	TraesCS7A01G265300	chr7D	92.432	185	7	1	2725	2902	248468690	248468874	1.100000e-64	257.0
18	TraesCS7A01G265300	chr7D	96.178	157	1	4	2208	2362	247885672	247885825	5.090000e-63	252.0
19	TraesCS7A01G265300	chr7D	91.509	106	4	4	2543	2643	247886020	247886125	1.150000e-29	141.0
20	TraesCS7A01G265300	chr7D	95.652	46	2	0	2558	2603	247885978	247886023	1.180000e-09	75.0
21	TraesCS7A01G265300	chrUn	100.000	417	0	0	937	1353	477095380	477094964	0.000000e+00	771.0
22	TraesCS7A01G265300	chr2D	83.150	546	78	10	1	539	83811478	83812016	1.280000e-133	486.0
23	TraesCS7A01G265300	chr2D	81.445	512	80	10	66	564	23732162	23732671	3.700000e-109	405.0
24	TraesCS7A01G265300	chr3B	82.815	547	86	6	1	542	40920799	40921342	1.660000e-132	483.0
25	TraesCS7A01G265300	chr3B	82.677	127	15	2	649	768	223559551	223559425	4.200000e-19	106.0
26	TraesCS7A01G265300	chr3B	89.286	56	6	0	713	768	174246717	174246772	1.530000e-08	71.3
27	TraesCS7A01G265300	chr1A	82.418	546	84	9	10	545	518470680	518470137	1.670000e-127	466.0
28	TraesCS7A01G265300	chr6B	80.139	574	97	14	1	561	514668337	514668906	2.210000e-111	412.0
29	TraesCS7A01G265300	chr1D	80.070	572	95	13	1	565	364094052	364094611	1.030000e-109	407.0
30	TraesCS7A01G265300	chr1B	78.720	578	102	15	1	570	487537744	487538308	1.740000e-97	366.0
31	TraesCS7A01G265300	chr6A	85.714	133	11	5	644	768	520709549	520709417	1.930000e-27	134.0
32	TraesCS7A01G265300	chr5B	84.496	129	6	6	640	768	440198341	440198455	6.970000e-22	115.0
33	TraesCS7A01G265300	chr5B	78.462	130	20	6	641	762	604719188	604719317	9.150000e-11	78.7
34	TraesCS7A01G265300	chr5B	97.059	34	0	1	2878	2911	614459225	614459193	4.290000e-04	56.5
35	TraesCS7A01G265300	chr4D	92.424	66	3	1	644	707	509439069	509439134	3.270000e-15	93.5
36	TraesCS7A01G265300	chr3D	90.164	61	4	1	644	702	152853087	152853027	9.150000e-11	78.7
37	TraesCS7A01G265300	chr3D	90.909	55	5	0	644	698	508567381	508567327	1.180000e-09	75.0
38	TraesCS7A01G265300	chr2A	77.863	131	21	4	645	768	628752062	628751933	1.180000e-09	75.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G265300	chr7A	265925755	265928832	3077	False	5685.00	5685	100.00000	1	3078	1	chr7A.!!$F1	3077
1	TraesCS7A01G265300	chr7A	265501840	265504007	2167	False	948.00	2246	91.46900	804	3077	3	chr7A.!!$F2	2273
2	TraesCS7A01G265300	chr7B	225506314	225509645	3331	False	1078.75	2800	91.89325	1	3077	4	chr7B.!!$F2	3076
3	TraesCS7A01G265300	chr7B	225388995	225392618	3623	False	1032.00	2638	92.13000	1	3077	4	chr7B.!!$F1	3076
4	TraesCS7A01G265300	chr7D	248466224	248469668	3444	False	848.25	2494	92.83750	805	3077	4	chr7D.!!$F2	2272
5	TraesCS7A01G265300	chr7D	247883884	247890173	6289	False	615.40	2113	93.50960	805	3077	5	chr7D.!!$F1	2272
6	TraesCS7A01G265300	chr2D	83811478	83812016	538	False	486.00	486	83.15000	1	539	1	chr2D.!!$F2	538
7	TraesCS7A01G265300	chr2D	23732162	23732671	509	False	405.00	405	81.44500	66	564	1	chr2D.!!$F1	498
8	TraesCS7A01G265300	chr3B	40920799	40921342	543	False	483.00	483	82.81500	1	542	1	chr3B.!!$F1	541
9	TraesCS7A01G265300	chr1A	518470137	518470680	543	True	466.00	466	82.41800	10	545	1	chr1A.!!$R1	535
10	TraesCS7A01G265300	chr6B	514668337	514668906	569	False	412.00	412	80.13900	1	561	1	chr6B.!!$F1	560
11	TraesCS7A01G265300	chr1D	364094052	364094611	559	False	407.00	407	80.07000	1	565	1	chr1D.!!$F1	564
12	TraesCS7A01G265300	chr1B	487537744	487538308	564	False	366.00	366	78.72000	1	570	1	chr1B.!!$F1	569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
78	79	0.103026	CATCGCCGAAGATGTGGAGA	59.897	55.0	10.6	0.0	42.15	3.71	F
462	507	0.104409	AGGACTCCCACAAACCTCCT	60.104	55.0	0.0	0.0	33.88	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2008	2591	0.392706	ACGATGCAGTGTGGAACTCA	59.607	50.000	0.0	0.0	36.83	3.41	R
2442	3593	1.370051	GGACGTTTTGCCAGCGAAC	60.370	57.895	0.0	0.0	0.00	3.95	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	4.039092	AGAACCGCCTGCCAGCAT	62.039	61.111	0.00	0.00	0.00	3.79
78	79	0.103026	CATCGCCGAAGATGTGGAGA	59.897	55.000	10.60	0.00	42.15	3.71
118	148	2.628290	GGAAGAGGAAGGAGGAGGATGT	60.628	54.545	0.00	0.00	0.00	3.06
202	232	2.202650	GCTTCAATGCGGCGCAAT	60.203	55.556	39.46	29.29	43.62	3.56
273	304	3.681835	GAGGCCACGTCGGTCAGT	61.682	66.667	5.01	0.00	44.49	3.41
296	331	1.566298	GCCCTCCCTCTGGTCACATT	61.566	60.000	0.00	0.00	0.00	2.71
401	445	2.750237	GGGGCATGTGACGGGTTC	60.750	66.667	0.00	0.00	0.00	3.62
410	454	0.464916	GTGACGGGTTCTTGTTGGGT	60.465	55.000	0.00	0.00	0.00	4.51
425	469	0.547075	TGGGTCAGGACGGTCAAAAA	59.453	50.000	10.76	0.00	0.00	1.94
434	478	0.748729	ACGGTCAAAAACGGGCTTGA	60.749	50.000	0.00	0.00	32.71	3.02
462	507	0.104409	AGGACTCCCACAAACCTCCT	60.104	55.000	0.00	0.00	33.88	3.69
573	837	3.776340	GACAACACGGTCCAAACAATTT	58.224	40.909	0.00	0.00	0.00	1.82
574	838	4.177783	GACAACACGGTCCAAACAATTTT	58.822	39.130	0.00	0.00	0.00	1.82
575	839	4.570930	ACAACACGGTCCAAACAATTTTT	58.429	34.783	0.00	0.00	0.00	1.94
595	859	4.637387	TTTTTAAGGGATACACGGTCCA	57.363	40.909	0.00	0.00	37.49	4.02
596	860	4.637387	TTTTAAGGGATACACGGTCCAA	57.363	40.909	0.00	0.00	37.49	3.53
597	861	4.637387	TTTAAGGGATACACGGTCCAAA	57.363	40.909	0.00	0.00	37.49	3.28
598	862	4.847990	TTAAGGGATACACGGTCCAAAT	57.152	40.909	0.00	0.00	37.49	2.32
599	863	5.954153	TTAAGGGATACACGGTCCAAATA	57.046	39.130	0.00	0.00	37.49	1.40
600	864	4.417426	AAGGGATACACGGTCCAAATAG	57.583	45.455	0.00	0.00	37.49	1.73
601	865	3.381335	AGGGATACACGGTCCAAATAGT	58.619	45.455	0.00	0.00	37.49	2.12
602	866	3.778629	AGGGATACACGGTCCAAATAGTT	59.221	43.478	0.00	0.00	37.49	2.24
603	867	3.875134	GGGATACACGGTCCAAATAGTTG	59.125	47.826	0.00	0.00	37.49	3.16
604	868	3.311596	GGATACACGGTCCAAATAGTTGC	59.688	47.826	0.00	0.00	35.76	4.17
605	869	2.264005	ACACGGTCCAAATAGTTGCA	57.736	45.000	0.00	0.00	33.01	4.08
606	870	2.577700	ACACGGTCCAAATAGTTGCAA	58.422	42.857	0.00	0.00	33.01	4.08
607	871	2.952978	ACACGGTCCAAATAGTTGCAAA	59.047	40.909	0.00	0.00	33.01	3.68
617	881	6.261381	TCCAAATAGTTGCAAAAGACTTACGT	59.739	34.615	0.00	0.00	33.01	3.57
621	885	5.857822	AGTTGCAAAAGACTTACGTATCC	57.142	39.130	0.00	0.00	0.00	2.59
640	904	5.793030	ATCCGACTTGAAGATACCCTAAG	57.207	43.478	0.00	0.00	0.00	2.18
673	937	2.854300	AAATGGGCCGGGCTAACCAG	62.854	60.000	28.80	0.00	40.22	4.00
768	1038	4.278513	CCTGGGCCGTGTTTGGGA	62.279	66.667	0.00	0.00	0.00	4.37
769	1039	2.983592	CTGGGCCGTGTTTGGGAC	60.984	66.667	0.00	0.00	0.00	4.46
776	1046	1.281656	CGTGTTTGGGACGGAAAGC	59.718	57.895	0.00	0.00	33.08	3.51
777	1047	1.440938	CGTGTTTGGGACGGAAAGCA	61.441	55.000	0.00	0.00	33.08	3.91
820	1389	1.376466	CCCCAGAATATCAGCCGGG	59.624	63.158	2.18	0.00	0.00	5.73
915	1492	3.785859	GCGGCTGACATCCCTCCA	61.786	66.667	0.00	0.00	0.00	3.86
935	1513	2.890371	CTTACACCTAGCCGCCGT	59.110	61.111	0.00	0.00	0.00	5.68
1557	2138	2.125269	GGCACCTACGATGCGGTT	60.125	61.111	0.00	0.00	44.37	4.44
1617	2198	2.135933	CTGTTCGAGAAGCCGTTCTTT	58.864	47.619	0.00	0.00	43.50	2.52
1954	2537	0.403271	AGCACCCTGTCTTCAGCATT	59.597	50.000	0.00	0.00	40.09	3.56
1957	2540	2.507484	CACCCTGTCTTCAGCATTGAA	58.493	47.619	0.00	0.00	40.92	2.69
2008	2591	3.003480	GCCGCTCAAGTTCTACAATTCT	58.997	45.455	0.00	0.00	0.00	2.40
2083	2666	3.389656	AGGCCAAGGCTAACTAGATTCTC	59.610	47.826	5.01	0.00	41.60	2.87
2100	2683	3.900966	TCTCATGAAGATGGTCACTGG	57.099	47.619	0.00	0.00	0.00	4.00
2162	2763	1.002888	ACACTGGGAGCAATCTGTCTG	59.997	52.381	0.00	0.00	0.00	3.51
2182	2783	2.263945	GAGCGTAGACAGAGGAAAAGC	58.736	52.381	0.00	0.00	0.00	3.51
2183	2784	1.066787	AGCGTAGACAGAGGAAAAGCC	60.067	52.381	0.00	0.00	0.00	4.35
2184	2785	2.007547	GCGTAGACAGAGGAAAAGCCC	61.008	57.143	0.00	0.00	37.37	5.19
2370	3514	6.173339	TCCTCTGTATCAAAATGTCAGTTCC	58.827	40.000	0.00	0.00	0.00	3.62
2378	3522	5.445069	TCAAAATGTCAGTTCCTTCCTTCA	58.555	37.500	0.00	0.00	0.00	3.02
2381	3525	2.851195	TGTCAGTTCCTTCCTTCAAGC	58.149	47.619	0.00	0.00	0.00	4.01
2442	3593	1.141657	AGATCGTGTGATTCATGGGGG	59.858	52.381	0.00	0.00	34.09	5.40
2465	3617	2.203422	TGGCAAAACGTCCCTGGG	60.203	61.111	6.33	6.33	0.00	4.45
2477	3636	2.813726	CCCTGGGGAACGTCACACA	61.814	63.158	4.27	0.00	37.50	3.72
2483	3642	2.227194	GGGGAACGTCACACAGAATTT	58.773	47.619	0.00	0.00	0.00	1.82
2484	3643	3.181453	TGGGGAACGTCACACAGAATTTA	60.181	43.478	0.00	0.00	0.00	1.40
2485	3644	3.435671	GGGGAACGTCACACAGAATTTAG	59.564	47.826	0.00	0.00	0.00	1.85
2487	3646	5.232463	GGGAACGTCACACAGAATTTAGTA	58.768	41.667	0.00	0.00	0.00	1.82
2505	3668	8.956533	ATTTAGTAAAAACAACACCAAGCATT	57.043	26.923	0.00	0.00	0.00	3.56
2509	3672	8.228035	AGTAAAAACAACACCAAGCATTACTA	57.772	30.769	0.00	0.00	31.39	1.82
2514	3677	5.243207	ACAACACCAAGCATTACTAGGTAC	58.757	41.667	0.00	0.00	0.00	3.34
2528	3691	9.214957	CATTACTAGGTACATTTCACAGTTCAA	57.785	33.333	0.00	0.00	0.00	2.69
2541	3704	1.603802	CAGTTCAACACCGCACTGAAT	59.396	47.619	0.00	0.00	39.25	2.57
2607	3770	3.193691	ACACAACACGGTTGGATTTTTGA	59.806	39.130	17.36	0.00	0.00	2.69
2723	7861	4.809426	GCTATAGGAGTGCATGTTTAACGT	59.191	41.667	1.04	0.00	0.00	3.99
2726	7864	3.000727	AGGAGTGCATGTTTAACGTAGC	58.999	45.455	0.00	0.00	0.00	3.58
2734	7872	3.546002	TGTTTAACGTAGCAACATGGC	57.454	42.857	0.00	0.00	0.00	4.40
2873	8023	2.627515	TGATGAATCCACTAGGCAGC	57.372	50.000	0.00	0.00	33.74	5.25
2919	8648	9.982291	TTCATAATATAAGACGTTTTTGCAGTC	57.018	29.630	0.00	0.00	35.30	3.51
3007	8776	5.233476	CGTACGCAACCTACAACATATGAAT	59.767	40.000	10.38	0.00	0.00	2.57
3042	8812	5.069251	AGTCCATATCACTAGCAGTACAACC	59.931	44.000	0.00	0.00	0.00	3.77
3077	8847	4.162040	GATGGATCCAGTGAAACCATCT	57.838	45.455	21.33	0.00	45.14	2.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	2.281484	GCAAGTCCTGGGCGTCAA	60.281	61.111	0.00	0.00	0.00	3.18
78	79	3.382832	CCTCCTCGTCGCACCCTT	61.383	66.667	0.00	0.00	0.00	3.95
118	148	4.386951	CCGGTGCCGTCCACATCA	62.387	66.667	9.90	0.00	46.50	3.07
207	237	3.159141	TTCCCGAGGAACCAACTCT	57.841	52.632	1.68	0.00	36.71	3.24
331	366	2.738139	CACGCCGCACTCATGTCA	60.738	61.111	0.00	0.00	0.00	3.58
401	445	0.602905	GACCGTCCTGACCCAACAAG	60.603	60.000	0.00	0.00	0.00	3.16
410	454	0.533308	CCCGTTTTTGACCGTCCTGA	60.533	55.000	0.00	0.00	0.00	3.86
443	487	0.104409	AGGAGGTTTGTGGGAGTCCT	60.104	55.000	9.58	0.00	0.00	3.85
462	507	3.243367	CGCAAACCAGAGACAAAAATGGA	60.243	43.478	0.00	0.00	36.62	3.41
574	838	4.637387	TGGACCGTGTATCCCTTAAAAA	57.363	40.909	0.00	0.00	35.12	1.94
575	839	4.637387	TTGGACCGTGTATCCCTTAAAA	57.363	40.909	0.00	0.00	35.12	1.52
576	840	4.637387	TTTGGACCGTGTATCCCTTAAA	57.363	40.909	0.00	0.00	35.12	1.52
577	841	4.847990	ATTTGGACCGTGTATCCCTTAA	57.152	40.909	0.00	0.00	35.12	1.85
578	842	4.964262	ACTATTTGGACCGTGTATCCCTTA	59.036	41.667	0.00	0.00	35.12	2.69
579	843	3.778629	ACTATTTGGACCGTGTATCCCTT	59.221	43.478	0.00	0.00	35.12	3.95
580	844	3.381335	ACTATTTGGACCGTGTATCCCT	58.619	45.455	0.00	0.00	35.12	4.20
581	845	3.832615	ACTATTTGGACCGTGTATCCC	57.167	47.619	0.00	0.00	35.12	3.85
582	846	3.311596	GCAACTATTTGGACCGTGTATCC	59.688	47.826	0.00	0.00	36.70	2.59
583	847	3.936453	TGCAACTATTTGGACCGTGTATC	59.064	43.478	0.00	0.00	32.81	2.24
584	848	3.945346	TGCAACTATTTGGACCGTGTAT	58.055	40.909	0.00	0.00	32.81	2.29
585	849	3.404224	TGCAACTATTTGGACCGTGTA	57.596	42.857	0.00	0.00	32.81	2.90
586	850	2.264005	TGCAACTATTTGGACCGTGT	57.736	45.000	0.00	0.00	32.81	4.49
587	851	3.634568	TTTGCAACTATTTGGACCGTG	57.365	42.857	0.00	0.00	31.89	4.94
588	852	3.886505	TCTTTTGCAACTATTTGGACCGT	59.113	39.130	0.00	0.00	31.89	4.83
589	853	4.023193	AGTCTTTTGCAACTATTTGGACCG	60.023	41.667	0.00	0.00	31.89	4.79
590	854	5.453567	AGTCTTTTGCAACTATTTGGACC	57.546	39.130	0.00	0.00	31.89	4.46
591	855	6.577427	CGTAAGTCTTTTGCAACTATTTGGAC	59.423	38.462	0.00	0.46	31.89	4.02
592	856	6.664515	CGTAAGTCTTTTGCAACTATTTGGA	58.335	36.000	0.00	0.00	32.81	3.53
593	857	6.911484	CGTAAGTCTTTTGCAACTATTTGG	57.089	37.500	0.00	0.00	32.81	3.28
617	881	6.607970	TCTTAGGGTATCTTCAAGTCGGATA	58.392	40.000	0.00	0.00	0.00	2.59
663	927	4.822628	GGCCAGCCTGGTTAGCCC	62.823	72.222	13.35	0.01	40.46	5.19
702	968	2.040544	GCCCGTGTCAGGTTCATGG	61.041	63.158	0.00	0.00	40.50	3.66
707	973	0.601841	CGTTTAGCCCGTGTCAGGTT	60.602	55.000	0.00	0.00	0.00	3.50
709	975	1.740296	CCGTTTAGCCCGTGTCAGG	60.740	63.158	0.00	0.00	0.00	3.86
710	976	1.740296	CCCGTTTAGCCCGTGTCAG	60.740	63.158	0.00	0.00	0.00	3.51
711	977	2.344500	CCCGTTTAGCCCGTGTCA	59.656	61.111	0.00	0.00	0.00	3.58
762	1032	0.821711	CCACTGCTTTCCGTCCCAAA	60.822	55.000	0.00	0.00	0.00	3.28
768	1038	2.113139	CCACCCACTGCTTTCCGT	59.887	61.111	0.00	0.00	0.00	4.69
769	1039	1.966451	GACCACCCACTGCTTTCCG	60.966	63.158	0.00	0.00	0.00	4.30
771	1041	4.081050	GGACCACCCACTGCTTTC	57.919	61.111	0.00	0.00	34.14	2.62
797	1068	0.886490	GCTGATATTCTGGGGGCGTG	60.886	60.000	0.00	0.00	0.00	5.34
820	1389	2.556287	CCTCCGCGTGAAAAGCAC	59.444	61.111	4.92	0.00	43.29	4.40
874	1444	3.195610	GCCTTGAGGTTTTATTCCTTGGG	59.804	47.826	0.00	0.00	35.20	4.12
915	1492	1.221021	GGCGGCTAGGTGTAAGCTT	59.779	57.895	3.48	3.48	46.63	3.74
935	1513	2.125832	GGTGGATTTCGTCGGCGA	60.126	61.111	8.66	8.66	46.36	5.54
1371	1952	3.749064	GAGTGCCGCGAGACCTCA	61.749	66.667	8.23	0.00	0.00	3.86
1491	2072	4.147449	TCGCCGATGTGCAGGGAG	62.147	66.667	0.00	0.00	0.00	4.30
1617	2198	2.680352	GCCCTGGAGACGGACTCA	60.680	66.667	9.54	0.00	46.54	3.41
1954	2537	3.427573	TGTGGAGTATTCGTCCTCTTCA	58.572	45.455	0.00	0.00	34.86	3.02
1957	2540	4.884668	TTTTGTGGAGTATTCGTCCTCT	57.115	40.909	0.00	0.00	34.86	3.69
2008	2591	0.392706	ACGATGCAGTGTGGAACTCA	59.607	50.000	0.00	0.00	36.83	3.41
2083	2666	3.012518	GGTTCCAGTGACCATCTTCATG	58.987	50.000	0.00	0.00	37.14	3.07
2100	2683	5.123979	CAGTTATTCTAGTTGGCCTTGGTTC	59.876	44.000	3.32	0.00	0.00	3.62
2162	2763	2.263945	GCTTTTCCTCTGTCTACGCTC	58.736	52.381	0.00	0.00	0.00	5.03
2276	3279	5.994177	AGAAGGTTCTCATACCACCAGGTAA	60.994	44.000	0.00	0.00	42.98	2.85
2442	3593	1.370051	GGACGTTTTGCCAGCGAAC	60.370	57.895	0.00	0.00	0.00	3.95
2465	3617	6.774354	TTACTAAATTCTGTGTGACGTTCC	57.226	37.500	0.00	0.00	0.00	3.62
2473	3632	8.524487	TGGTGTTGTTTTTACTAAATTCTGTGT	58.476	29.630	0.00	0.00	0.00	3.72
2477	3636	8.254508	TGCTTGGTGTTGTTTTTACTAAATTCT	58.745	29.630	0.00	0.00	0.00	2.40
2483	3642	8.228035	AGTAATGCTTGGTGTTGTTTTTACTA	57.772	30.769	0.00	0.00	0.00	1.82
2484	3643	7.107639	AGTAATGCTTGGTGTTGTTTTTACT	57.892	32.000	0.00	0.00	0.00	2.24
2485	3644	7.593644	CCTAGTAATGCTTGGTGTTGTTTTTAC	59.406	37.037	0.00	0.00	35.74	2.01
2487	3646	6.512297	CCTAGTAATGCTTGGTGTTGTTTTT	58.488	36.000	0.00	0.00	35.74	1.94
2505	3668	7.654520	GTGTTGAACTGTGAAATGTACCTAGTA	59.345	37.037	0.00	0.00	0.00	1.82
2509	3672	4.578928	GGTGTTGAACTGTGAAATGTACCT	59.421	41.667	0.00	0.00	0.00	3.08
2514	3677	2.223456	TGCGGTGTTGAACTGTGAAATG	60.223	45.455	0.00	0.00	37.49	2.32
2528	3691	5.401550	CAATTTAATCATTCAGTGCGGTGT	58.598	37.500	0.00	0.00	0.00	4.16
2734	7872	4.684134	CCACCCCAGCCCCAACAG	62.684	72.222	0.00	0.00	0.00	3.16
2873	8023	5.484715	TGAACGGAGGGAGTAACAATTAAG	58.515	41.667	0.00	0.00	0.00	1.85
2919	8648	8.064336	ACTGTAACTTATACTACCTCTGTTGG	57.936	38.462	0.00	0.00	0.00	3.77
2951	8719	6.086222	GTGCCACAGTTATCACATTTACTTG	58.914	40.000	0.00	0.00	0.00	3.16
3007	8776	7.201884	GCTAGTGATATGGACTGTACCTGTTAA	60.202	40.741	0.00	0.00	0.00	2.01
3042	8812	5.448654	TGGATCCATCTTGGTTTAGAATGG	58.551	41.667	11.44	0.00	39.03	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.