Multiple sequence alignment - TraesCS7A01G265200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G265200 chr7A 100.000 3264 0 0 1 3264 265500962 265504225 0.000000e+00 6028.0
1 TraesCS7A01G265200 chr7A 93.103 1566 57 18 879 2400 265926558 265928116 0.000000e+00 2246.0
2 TraesCS7A01G265200 chr7A 91.667 264 16 2 2592 2851 265928297 265928558 8.610000e-96 361.0
3 TraesCS7A01G265200 chr7A 82.353 374 29 12 2856 3227 265928647 265928985 1.150000e-74 291.0
4 TraesCS7A01G265200 chr7D 92.239 1804 82 22 771 2546 248466116 248467889 0.000000e+00 2503.0
5 TraesCS7A01G265200 chr7D 94.644 1419 64 6 765 2178 247883770 247885181 0.000000e+00 2189.0
6 TraesCS7A01G265200 chr7D 89.868 681 61 6 3 678 528040008 528040685 0.000000e+00 869.0
7 TraesCS7A01G265200 chr7D 93.231 458 18 7 2246 2694 247885672 247886125 0.000000e+00 662.0
8 TraesCS7A01G265200 chr7D 84.104 346 21 10 2873 3215 248469496 248469810 1.470000e-78 303.0
9 TraesCS7A01G265200 chr7D 84.834 211 12 7 2857 3065 247890000 247890192 9.240000e-46 195.0
10 TraesCS7A01G265200 chr7D 94.262 122 6 1 2592 2712 248468077 248468198 5.560000e-43 185.0
11 TraesCS7A01G265200 chr7D 92.913 127 7 1 2725 2851 247889786 247889910 2.000000e-42 183.0
12 TraesCS7A01G265200 chr7D 98.485 66 1 0 2771 2836 248468689 248468754 2.060000e-22 117.0
13 TraesCS7A01G265200 chr7B 93.991 1581 43 20 879 2414 225507321 225508894 0.000000e+00 2346.0
14 TraesCS7A01G265200 chr7B 93.932 1582 44 19 879 2414 225390298 225391873 0.000000e+00 2342.0
15 TraesCS7A01G265200 chr7B 95.094 265 5 2 2492 2751 225391868 225392129 8.430000e-111 411.0
16 TraesCS7A01G265200 chr7B 94.340 265 7 2 2492 2751 225508889 225509150 1.820000e-107 399.0
17 TraesCS7A01G265200 chr7B 88.168 262 12 7 2595 2851 225509149 225509396 8.860000e-76 294.0
18 TraesCS7A01G265200 chr7B 91.038 212 10 5 2856 3065 225392433 225392637 8.920000e-71 278.0
19 TraesCS7A01G265200 chr7B 91.038 212 10 4 2856 3065 225509460 225509664 8.920000e-71 278.0
20 TraesCS7A01G265200 chr7B 87.023 262 9 9 2595 2851 225392128 225392369 4.150000e-69 272.0
21 TraesCS7A01G265200 chr7B 97.826 46 1 0 2550 2595 225391983 225392028 2.700000e-11 80.5
22 TraesCS7A01G265200 chr7B 97.826 46 1 0 2550 2595 225392140 225392185 2.700000e-11 80.5
23 TraesCS7A01G265200 chr7B 97.826 46 1 0 2550 2595 225509004 225509049 2.700000e-11 80.5
24 TraesCS7A01G265200 chr7B 97.826 46 1 0 2550 2595 225509161 225509206 2.700000e-11 80.5
25 TraesCS7A01G265200 chr6D 92.024 677 50 3 5 678 130198405 130197730 0.000000e+00 948.0
26 TraesCS7A01G265200 chr3D 90.265 678 60 3 5 680 315769251 315768578 0.000000e+00 881.0
27 TraesCS7A01G265200 chr5D 89.898 683 59 8 2 678 525594619 525595297 0.000000e+00 870.0
28 TraesCS7A01G265200 chr5D 89.766 684 62 5 2 680 486002224 486002904 0.000000e+00 869.0
29 TraesCS7A01G265200 chr5D 89.574 681 67 4 5 683 108341306 108341984 0.000000e+00 861.0
30 TraesCS7A01G265200 chr5D 89.412 680 67 5 2 678 432511326 432512003 0.000000e+00 852.0
31 TraesCS7A01G265200 chr3A 89.691 679 64 6 5 680 100357053 100356378 0.000000e+00 861.0
32 TraesCS7A01G265200 chr1D 89.574 681 63 6 2 677 236079720 236080397 0.000000e+00 857.0
33 TraesCS7A01G265200 chr1D 92.453 53 4 0 2412 2464 478772339 478772287 3.490000e-10 76.8
34 TraesCS7A01G265200 chrUn 98.082 417 8 0 1015 1431 477095380 477094964 0.000000e+00 726.0
35 TraesCS7A01G265200 chr1B 90.541 74 6 1 2392 2464 658497440 658497513 2.680000e-16 97.1
36 TraesCS7A01G265200 chr1B 91.176 68 4 2 2385 2450 211325039 211324972 1.250000e-14 91.6
37 TraesCS7A01G265200 chr1B 86.667 75 8 2 2396 2469 592136417 592136344 7.510000e-12 82.4
38 TraesCS7A01G265200 chr1B 85.333 75 9 2 2396 2469 592106367 592106294 3.490000e-10 76.8
39 TraesCS7A01G265200 chr1A 88.750 80 8 1 2386 2464 567970004 567969925 2.680000e-16 97.1
40 TraesCS7A01G265200 chr3B 90.323 62 4 2 2390 2450 531798016 531798076 2.700000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G265200 chr7A 265500962 265504225 3263 False 6028.000000 6028 100.000000 1 3264 1 chr7A.!!$F1 3263
1 TraesCS7A01G265200 chr7A 265926558 265928985 2427 False 966.000000 2246 89.041000 879 3227 3 chr7A.!!$F2 2348
2 TraesCS7A01G265200 chr7D 528040008 528040685 677 False 869.000000 869 89.868000 3 678 1 chr7D.!!$F1 675
3 TraesCS7A01G265200 chr7D 247883770 247890192 6422 False 807.250000 2189 91.405500 765 3065 4 chr7D.!!$F2 2300
4 TraesCS7A01G265200 chr7D 248466116 248469810 3694 False 777.000000 2503 92.272500 771 3215 4 chr7D.!!$F3 2444
5 TraesCS7A01G265200 chr7B 225507321 225509664 2343 False 579.666667 2346 93.864833 879 3065 6 chr7B.!!$F2 2186
6 TraesCS7A01G265200 chr7B 225390298 225392637 2339 False 577.333333 2342 93.789833 879 3065 6 chr7B.!!$F1 2186
7 TraesCS7A01G265200 chr6D 130197730 130198405 675 True 948.000000 948 92.024000 5 678 1 chr6D.!!$R1 673
8 TraesCS7A01G265200 chr3D 315768578 315769251 673 True 881.000000 881 90.265000 5 680 1 chr3D.!!$R1 675
9 TraesCS7A01G265200 chr5D 525594619 525595297 678 False 870.000000 870 89.898000 2 678 1 chr5D.!!$F4 676
10 TraesCS7A01G265200 chr5D 486002224 486002904 680 False 869.000000 869 89.766000 2 680 1 chr5D.!!$F3 678
11 TraesCS7A01G265200 chr5D 108341306 108341984 678 False 861.000000 861 89.574000 5 683 1 chr5D.!!$F1 678
12 TraesCS7A01G265200 chr5D 432511326 432512003 677 False 852.000000 852 89.412000 2 678 1 chr5D.!!$F2 676
13 TraesCS7A01G265200 chr3A 100356378 100357053 675 True 861.000000 861 89.691000 5 680 1 chr3A.!!$R1 675
14 TraesCS7A01G265200 chr1D 236079720 236080397 677 False 857.000000 857 89.574000 2 677 1 chr1D.!!$F1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 771 0.038343 GGCATGAATGGTTTGCACGT 60.038 50.0 0.00 0.0 38.12 4.49 F
763 784 0.250124 TGCACGTGACCGGAAAGAAT 60.250 50.0 22.23 0.0 38.78 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 1888 0.035317 AAGACAGGATCAGTTGCGCA 59.965 50.0 5.66 5.66 0.00 6.09 R
2619 3241 1.057275 TGTGTCCACAAGGCAGGGTA 61.057 55.0 0.00 0.00 38.56 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.205893 GAAGAGGCTTGAGATGGACGT 59.794 52.381 0.00 0.00 0.00 4.34
177 178 2.106938 GCGAGCATGATGACCGGA 59.893 61.111 9.46 0.00 0.00 5.14
283 284 2.817901 TCGACGACGAGTGATCTATGA 58.182 47.619 5.75 0.00 43.81 2.15
364 369 1.208535 TGGTGTGGTCGAACTCAAGTT 59.791 47.619 6.82 0.00 41.64 2.66
429 434 2.327343 GCGCCAGCATGAACTGTGA 61.327 57.895 0.00 0.00 44.35 3.58
467 475 2.179547 CATTGTATGCCGGCGCTGA 61.180 57.895 23.90 3.74 35.36 4.26
482 493 2.751036 TGACATGGTGCCGGCATG 60.751 61.111 35.23 28.62 0.00 4.06
483 494 2.438254 GACATGGTGCCGGCATGA 60.438 61.111 35.23 22.66 0.00 3.07
484 495 1.825191 GACATGGTGCCGGCATGAT 60.825 57.895 35.23 23.93 0.00 2.45
583 603 0.802222 CGCACTGTCGATCCGAATGT 60.802 55.000 0.00 0.00 37.72 2.71
585 605 2.120232 GCACTGTCGATCCGAATGTAG 58.880 52.381 0.00 0.00 37.72 2.74
612 632 4.338539 GACGTCGGGTGTGCGACT 62.339 66.667 0.00 0.00 33.46 4.18
617 637 1.977009 TCGGGTGTGCGACTGATCT 60.977 57.895 0.00 0.00 0.00 2.75
618 638 1.807165 CGGGTGTGCGACTGATCTG 60.807 63.158 0.00 0.00 0.00 2.90
655 676 4.269183 AGACAAATACGCCATCCATTTGA 58.731 39.130 11.93 0.00 40.49 2.69
660 681 0.527565 ACGCCATCCATTTGAGTTGC 59.472 50.000 0.00 0.00 0.00 4.17
681 702 3.399330 CTCCGTTGGAGTTGCTCTTAAA 58.601 45.455 4.65 0.00 44.25 1.52
682 703 4.003648 CTCCGTTGGAGTTGCTCTTAAAT 58.996 43.478 4.65 0.00 44.25 1.40
683 704 4.000988 TCCGTTGGAGTTGCTCTTAAATC 58.999 43.478 0.00 0.00 0.00 2.17
684 705 4.003648 CCGTTGGAGTTGCTCTTAAATCT 58.996 43.478 0.00 0.00 0.00 2.40
685 706 5.046878 TCCGTTGGAGTTGCTCTTAAATCTA 60.047 40.000 0.00 0.00 0.00 1.98
686 707 5.817816 CCGTTGGAGTTGCTCTTAAATCTAT 59.182 40.000 0.00 0.00 0.00 1.98
687 708 6.238211 CCGTTGGAGTTGCTCTTAAATCTATG 60.238 42.308 0.00 0.00 0.00 2.23
688 709 6.535150 CGTTGGAGTTGCTCTTAAATCTATGA 59.465 38.462 0.00 0.00 0.00 2.15
689 710 7.225538 CGTTGGAGTTGCTCTTAAATCTATGAT 59.774 37.037 0.00 0.00 0.00 2.45
690 711 8.897752 GTTGGAGTTGCTCTTAAATCTATGATT 58.102 33.333 0.00 0.00 0.00 2.57
733 754 1.145156 AAAAACGGCAAGGTTGGGC 59.855 52.632 0.00 0.00 0.00 5.36
734 755 1.617947 AAAAACGGCAAGGTTGGGCA 61.618 50.000 0.00 0.00 0.00 5.36
735 756 1.406860 AAAACGGCAAGGTTGGGCAT 61.407 50.000 0.00 0.00 0.00 4.40
736 757 2.098426 AAACGGCAAGGTTGGGCATG 62.098 55.000 0.00 0.00 0.00 4.06
737 758 2.676121 CGGCAAGGTTGGGCATGA 60.676 61.111 0.00 0.00 0.00 3.07
738 759 2.274645 CGGCAAGGTTGGGCATGAA 61.275 57.895 0.00 0.00 0.00 2.57
739 760 1.606885 CGGCAAGGTTGGGCATGAAT 61.607 55.000 0.00 0.00 0.00 2.57
740 761 0.108041 GGCAAGGTTGGGCATGAATG 60.108 55.000 0.00 0.00 0.00 2.67
741 762 0.108041 GCAAGGTTGGGCATGAATGG 60.108 55.000 0.00 0.00 0.00 3.16
742 763 1.269012 CAAGGTTGGGCATGAATGGT 58.731 50.000 0.00 0.00 0.00 3.55
743 764 1.624813 CAAGGTTGGGCATGAATGGTT 59.375 47.619 0.00 0.00 0.00 3.67
744 765 2.028561 AGGTTGGGCATGAATGGTTT 57.971 45.000 0.00 0.00 0.00 3.27
745 766 1.624813 AGGTTGGGCATGAATGGTTTG 59.375 47.619 0.00 0.00 0.00 2.93
746 767 1.441738 GTTGGGCATGAATGGTTTGC 58.558 50.000 0.00 0.00 35.64 3.68
747 768 1.054231 TTGGGCATGAATGGTTTGCA 58.946 45.000 0.00 0.00 38.12 4.08
748 769 0.321021 TGGGCATGAATGGTTTGCAC 59.679 50.000 0.00 0.00 40.22 4.57
749 770 0.737019 GGGCATGAATGGTTTGCACG 60.737 55.000 0.00 0.00 38.12 5.34
750 771 0.038343 GGCATGAATGGTTTGCACGT 60.038 50.000 0.00 0.00 38.12 4.49
751 772 1.062258 GCATGAATGGTTTGCACGTG 58.938 50.000 12.28 12.28 36.40 4.49
752 773 1.335780 GCATGAATGGTTTGCACGTGA 60.336 47.619 22.23 1.04 36.40 4.35
753 774 2.318578 CATGAATGGTTTGCACGTGAC 58.681 47.619 22.23 11.46 0.00 3.67
754 775 0.665835 TGAATGGTTTGCACGTGACC 59.334 50.000 22.23 18.56 0.00 4.02
755 776 0.385473 GAATGGTTTGCACGTGACCG 60.385 55.000 22.23 0.00 36.22 4.79
756 777 1.791103 AATGGTTTGCACGTGACCGG 61.791 55.000 22.23 0.00 38.78 5.28
757 778 2.589442 GGTTTGCACGTGACCGGA 60.589 61.111 22.23 0.00 38.78 5.14
758 779 2.181521 GGTTTGCACGTGACCGGAA 61.182 57.895 22.23 2.56 38.78 4.30
759 780 1.716826 GGTTTGCACGTGACCGGAAA 61.717 55.000 22.23 2.57 38.78 3.13
760 781 0.316689 GTTTGCACGTGACCGGAAAG 60.317 55.000 22.23 0.02 38.78 2.62
761 782 0.462225 TTTGCACGTGACCGGAAAGA 60.462 50.000 22.23 0.00 38.78 2.52
762 783 0.462225 TTGCACGTGACCGGAAAGAA 60.462 50.000 22.23 0.00 38.78 2.52
763 784 0.250124 TGCACGTGACCGGAAAGAAT 60.250 50.000 22.23 0.00 38.78 2.40
776 797 3.424433 CGGAAAGAATCGGGAAGAAAACG 60.424 47.826 0.00 0.00 0.00 3.60
794 815 2.557317 ACGAAGAGAAAACTCGGCAAA 58.443 42.857 0.00 0.00 0.00 3.68
811 832 2.287248 GCAAAAGATAAGCTCGGATGGC 60.287 50.000 0.00 0.00 0.00 4.40
822 843 2.361104 GGATGGCAAAGCGGTGGA 60.361 61.111 0.00 0.00 0.00 4.02
855 876 4.250305 ACGTCCCCACACAGGTGC 62.250 66.667 0.00 0.00 43.88 5.01
875 896 2.664185 CATCCGATGCAGCCCGAG 60.664 66.667 0.00 0.00 0.00 4.63
886 907 2.588034 GCCCGAGTGCCCGAATAC 60.588 66.667 0.00 0.00 0.00 1.89
893 914 3.395702 TGCCCGAATACCAGCCGT 61.396 61.111 0.00 0.00 0.00 5.68
918 940 0.816018 TTTCACGCGGAGGCAAAAGA 60.816 50.000 12.47 0.00 39.92 2.52
923 945 1.128513 CGCGGAGGCAAAAGAAAAAC 58.871 50.000 0.00 0.00 39.92 2.43
926 948 1.686587 CGGAGGCAAAAGAAAAACCCT 59.313 47.619 0.00 0.00 0.00 4.34
949 974 4.873129 CCGCCGACACATCCCGAG 62.873 72.222 0.00 0.00 0.00 4.63
961 986 2.227737 TCCCGAGGGAATAAAGCCC 58.772 57.895 8.71 0.00 46.40 5.19
976 1001 2.666098 GCCCTAACCTCAAGGCCGA 61.666 63.158 0.00 0.00 39.60 5.54
995 1020 2.592308 GCTGACATCCCTCCCCAC 59.408 66.667 0.00 0.00 0.00 4.61
1270 1298 1.053424 AGGCAAGTCGGACTACCAAA 58.947 50.000 24.18 0.00 35.59 3.28
1428 1456 2.687566 GTCCTGGTCATCGGGGGT 60.688 66.667 0.00 0.00 42.31 4.95
1538 1566 0.321671 TCCAAGCAGTTCTTCCCTCG 59.678 55.000 0.00 0.00 31.27 4.63
1932 1975 3.798202 AGCCACCGAGTTTATGATTCTC 58.202 45.455 0.00 0.00 0.00 2.87
2150 2193 5.071115 AGGCCAAGGCTAACTAGATTCTTAG 59.929 44.000 5.01 0.00 41.60 2.18
2187 2254 1.416030 ACCAAGGCCAATTTCAACACC 59.584 47.619 5.01 0.00 0.00 4.16
2348 2822 8.383175 TGGTATGAGAACCTTCTGAATTTAGTT 58.617 33.333 0.00 0.00 40.44 2.24
2490 2965 3.533691 GGACGAACGAAGCGAGCG 61.534 66.667 0.14 0.00 34.63 5.03
2642 3264 1.102154 CTGCCTTGTGGACACAACAA 58.898 50.000 13.42 0.00 45.42 2.83
2648 3270 2.498644 TGTGGACACAACAAGGTTGA 57.501 45.000 15.35 0.00 38.56 3.18
2789 7388 2.551287 CGGAGTAACATGGTTGTTGGGA 60.551 50.000 0.00 0.00 45.56 4.37
2836 7440 8.408601 GCATTTCCTAACATATCATGAACAACT 58.591 33.333 0.00 0.00 0.00 3.16
2853 7464 9.934190 ATGAACAACTTAAAATGACATTTTTGC 57.066 25.926 26.59 10.60 42.13 3.68
2854 7465 8.939929 TGAACAACTTAAAATGACATTTTTGCA 58.060 25.926 26.59 12.74 42.13 4.08
2872 8146 9.950680 ATTTTTGCAGTTCATAATATAAGACGG 57.049 29.630 0.00 0.00 0.00 4.79
2873 8147 8.725405 TTTTGCAGTTCATAATATAAGACGGA 57.275 30.769 0.00 0.00 0.00 4.69
2874 8148 7.709269 TTGCAGTTCATAATATAAGACGGAC 57.291 36.000 0.00 0.00 0.00 4.79
2875 8149 5.918576 TGCAGTTCATAATATAAGACGGACG 59.081 40.000 0.00 0.00 0.00 4.79
2890 8164 2.098443 ACGGACGTTTTTGCAGTTCAAT 59.902 40.909 0.00 0.00 34.12 2.57
2981 8294 5.121611 CAGCCGACAACATATGAACTAACAA 59.878 40.000 10.38 0.00 0.00 2.83
2982 8295 5.121768 AGCCGACAACATATGAACTAACAAC 59.878 40.000 10.38 0.00 0.00 3.32
2983 8296 5.106869 GCCGACAACATATGAACTAACAACA 60.107 40.000 10.38 0.00 0.00 3.33
2984 8297 6.534059 CCGACAACATATGAACTAACAACAG 58.466 40.000 10.38 0.00 0.00 3.16
2985 8298 6.402118 CCGACAACATATGAACTAACAACAGG 60.402 42.308 10.38 0.00 0.00 4.00
2986 8299 6.147164 CGACAACATATGAACTAACAACAGGT 59.853 38.462 10.38 0.00 0.00 4.00
3028 8341 9.214957 CAGTACAACACATTCTAAACCAAGATA 57.785 33.333 0.00 0.00 0.00 1.98
3029 8342 9.959721 AGTACAACACATTCTAAACCAAGATAT 57.040 29.630 0.00 0.00 0.00 1.63
3065 8378 1.448985 CGGTCCATCAATCCGTGTTT 58.551 50.000 0.00 0.00 39.51 2.83
3066 8379 1.810151 CGGTCCATCAATCCGTGTTTT 59.190 47.619 0.00 0.00 39.51 2.43
3067 8380 2.227865 CGGTCCATCAATCCGTGTTTTT 59.772 45.455 0.00 0.00 39.51 1.94
3084 8397 2.203699 TTTTTGCGGGGGCCATCA 60.204 55.556 4.39 0.00 0.00 3.07
3085 8398 1.611851 TTTTTGCGGGGGCCATCAT 60.612 52.632 4.39 0.00 0.00 2.45
3086 8399 1.612395 TTTTTGCGGGGGCCATCATC 61.612 55.000 4.39 0.00 0.00 2.92
3087 8400 4.521292 TTGCGGGGGCCATCATCC 62.521 66.667 4.39 0.00 0.00 3.51
3090 8403 4.935495 CGGGGGCCATCATCCGTG 62.935 72.222 4.39 0.00 37.92 4.94
3091 8404 3.809013 GGGGGCCATCATCCGTGT 61.809 66.667 4.39 0.00 0.00 4.49
3092 8405 2.275418 GGGGCCATCATCCGTGTT 59.725 61.111 4.39 0.00 0.00 3.32
3100 8413 3.469739 CCATCATCCGTGTTCATCATGA 58.530 45.455 0.00 0.00 35.23 3.07
3176 8489 5.234329 AGCGAATATGTTCTACCATTTGTCG 59.766 40.000 0.46 0.00 32.00 4.35
3183 8496 7.739498 ATGTTCTACCATTTGTCGTACTTTT 57.261 32.000 0.00 0.00 0.00 2.27
3185 8498 7.632721 TGTTCTACCATTTGTCGTACTTTTTC 58.367 34.615 0.00 0.00 0.00 2.29
3188 8501 8.080083 TCTACCATTTGTCGTACTTTTTCTTC 57.920 34.615 0.00 0.00 0.00 2.87
3192 8505 6.856426 CCATTTGTCGTACTTTTTCTTCTTCC 59.144 38.462 0.00 0.00 0.00 3.46
3207 8520 2.470990 TCTTCCTTCTGAGCTATGCCA 58.529 47.619 0.00 0.00 0.00 4.92
3215 8528 0.684479 TGAGCTATGCCACTCCGAGT 60.684 55.000 0.00 0.00 31.65 4.18
3221 8534 0.617820 ATGCCACTCCGAGTTAGGGT 60.618 55.000 0.00 0.00 0.00 4.34
3227 8540 3.618351 CACTCCGAGTTAGGGTTAGAGA 58.382 50.000 0.00 0.00 0.00 3.10
3228 8541 4.208746 CACTCCGAGTTAGGGTTAGAGAT 58.791 47.826 0.00 0.00 0.00 2.75
3229 8542 4.276431 CACTCCGAGTTAGGGTTAGAGATC 59.724 50.000 0.00 0.00 0.00 2.75
3230 8543 3.474600 TCCGAGTTAGGGTTAGAGATCG 58.525 50.000 0.00 0.00 0.00 3.69
3231 8544 2.030981 CCGAGTTAGGGTTAGAGATCGC 60.031 54.545 0.00 0.00 0.00 4.58
3232 8545 2.030981 CGAGTTAGGGTTAGAGATCGCC 60.031 54.545 0.00 0.00 0.00 5.54
3233 8546 2.296752 GAGTTAGGGTTAGAGATCGCCC 59.703 54.545 0.00 0.00 41.36 6.13
3234 8547 1.343789 GTTAGGGTTAGAGATCGCCCC 59.656 57.143 1.70 1.70 41.99 5.80
3235 8548 0.559205 TAGGGTTAGAGATCGCCCCA 59.441 55.000 10.95 0.00 41.99 4.96
3236 8549 0.326238 AGGGTTAGAGATCGCCCCAA 60.326 55.000 10.95 0.00 41.99 4.12
3237 8550 0.106894 GGGTTAGAGATCGCCCCAAG 59.893 60.000 4.70 0.00 35.32 3.61
3238 8551 0.106894 GGTTAGAGATCGCCCCAAGG 59.893 60.000 0.00 0.00 0.00 3.61
3239 8552 0.831307 GTTAGAGATCGCCCCAAGGT 59.169 55.000 0.00 0.00 34.57 3.50
3240 8553 1.209747 GTTAGAGATCGCCCCAAGGTT 59.790 52.381 0.00 0.00 34.57 3.50
3241 8554 2.433239 GTTAGAGATCGCCCCAAGGTTA 59.567 50.000 0.00 0.00 34.57 2.85
3242 8555 1.580059 AGAGATCGCCCCAAGGTTAA 58.420 50.000 0.00 0.00 34.57 2.01
3243 8556 1.486726 AGAGATCGCCCCAAGGTTAAG 59.513 52.381 0.00 0.00 34.57 1.85
3244 8557 0.546598 AGATCGCCCCAAGGTTAAGG 59.453 55.000 0.00 0.00 34.57 2.69
3245 8558 0.465642 GATCGCCCCAAGGTTAAGGG 60.466 60.000 0.00 0.00 45.04 3.95
3250 8563 2.170052 CCCAAGGTTAAGGGGGTGT 58.830 57.895 0.00 0.00 41.58 4.16
3251 8564 0.251608 CCCAAGGTTAAGGGGGTGTG 60.252 60.000 0.00 0.00 41.58 3.82
3252 8565 0.481128 CCAAGGTTAAGGGGGTGTGT 59.519 55.000 0.00 0.00 0.00 3.72
3253 8566 1.616159 CAAGGTTAAGGGGGTGTGTG 58.384 55.000 0.00 0.00 0.00 3.82
3254 8567 1.133606 CAAGGTTAAGGGGGTGTGTGT 60.134 52.381 0.00 0.00 0.00 3.72
3255 8568 0.476771 AGGTTAAGGGGGTGTGTGTG 59.523 55.000 0.00 0.00 0.00 3.82
3256 8569 0.475044 GGTTAAGGGGGTGTGTGTGA 59.525 55.000 0.00 0.00 0.00 3.58
3257 8570 1.544759 GGTTAAGGGGGTGTGTGTGAG 60.545 57.143 0.00 0.00 0.00 3.51
3258 8571 0.768622 TTAAGGGGGTGTGTGTGAGG 59.231 55.000 0.00 0.00 0.00 3.86
3259 8572 0.400815 TAAGGGGGTGTGTGTGAGGT 60.401 55.000 0.00 0.00 0.00 3.85
3260 8573 0.400815 AAGGGGGTGTGTGTGAGGTA 60.401 55.000 0.00 0.00 0.00 3.08
3261 8574 0.400815 AGGGGGTGTGTGTGAGGTAA 60.401 55.000 0.00 0.00 0.00 2.85
3262 8575 0.036306 GGGGGTGTGTGTGAGGTAAG 59.964 60.000 0.00 0.00 0.00 2.34
3263 8576 0.763035 GGGGTGTGTGTGAGGTAAGT 59.237 55.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.890542 AAGCGTCCATTTGCTCTGCA 60.891 50.000 0.00 0.00 41.46 4.41
38 39 0.534412 CACGTCCATCTCAAGCCTCT 59.466 55.000 0.00 0.00 0.00 3.69
56 57 1.074405 ACATCTTGGCTTGCTTCTCCA 59.926 47.619 0.00 0.00 0.00 3.86
177 178 2.837947 TCCACCTTCATGATCTCCACT 58.162 47.619 0.00 0.00 0.00 4.00
429 434 6.319658 ACAATGTCGGCTTCAGAAAATATCAT 59.680 34.615 0.00 0.00 0.00 2.45
467 475 2.122797 CATCATGCCGGCACCATGT 61.123 57.895 35.50 13.69 40.63 3.21
482 493 1.156645 GCCAGCGACCATGTCTCATC 61.157 60.000 0.00 0.00 0.00 2.92
483 494 1.153289 GCCAGCGACCATGTCTCAT 60.153 57.895 0.00 0.00 0.00 2.90
484 495 1.902765 ATGCCAGCGACCATGTCTCA 61.903 55.000 0.00 0.00 0.00 3.27
536 556 1.679139 GCCGATCCATTTCATGTCCA 58.321 50.000 0.00 0.00 0.00 4.02
571 591 3.243101 GCTCAGTTCTACATTCGGATCGA 60.243 47.826 0.00 0.00 0.00 3.59
578 598 2.186076 CGTCCGCTCAGTTCTACATTC 58.814 52.381 0.00 0.00 0.00 2.67
583 603 1.642037 CCGACGTCCGCTCAGTTCTA 61.642 60.000 10.58 0.00 36.84 2.10
585 605 2.504244 CCGACGTCCGCTCAGTTC 60.504 66.667 10.58 0.00 36.84 3.01
604 624 0.388520 CCGTTCAGATCAGTCGCACA 60.389 55.000 0.00 0.00 0.00 4.57
606 626 0.109272 GTCCGTTCAGATCAGTCGCA 60.109 55.000 0.00 0.00 0.00 5.10
631 652 6.061441 TCAAATGGATGGCGTATTTGTCTAT 58.939 36.000 12.38 0.00 40.72 1.98
646 667 2.489329 CAACGGAGCAACTCAAATGGAT 59.511 45.455 0.00 0.00 31.08 3.41
715 736 1.145156 GCCCAACCTTGCCGTTTTT 59.855 52.632 0.00 0.00 0.00 1.94
716 737 1.406860 ATGCCCAACCTTGCCGTTTT 61.407 50.000 0.00 0.00 0.00 2.43
717 738 1.836604 ATGCCCAACCTTGCCGTTT 60.837 52.632 0.00 0.00 0.00 3.60
718 739 2.203625 ATGCCCAACCTTGCCGTT 60.204 55.556 0.00 0.00 0.00 4.44
719 740 2.990967 CATGCCCAACCTTGCCGT 60.991 61.111 0.00 0.00 0.00 5.68
720 741 1.606885 ATTCATGCCCAACCTTGCCG 61.607 55.000 0.00 0.00 0.00 5.69
721 742 0.108041 CATTCATGCCCAACCTTGCC 60.108 55.000 0.00 0.00 0.00 4.52
722 743 0.108041 CCATTCATGCCCAACCTTGC 60.108 55.000 0.00 0.00 0.00 4.01
723 744 1.269012 ACCATTCATGCCCAACCTTG 58.731 50.000 0.00 0.00 0.00 3.61
724 745 2.028561 AACCATTCATGCCCAACCTT 57.971 45.000 0.00 0.00 0.00 3.50
725 746 1.624813 CAAACCATTCATGCCCAACCT 59.375 47.619 0.00 0.00 0.00 3.50
726 747 1.945355 GCAAACCATTCATGCCCAACC 60.945 52.381 0.00 0.00 34.03 3.77
727 748 1.270732 TGCAAACCATTCATGCCCAAC 60.271 47.619 0.00 0.00 39.31 3.77
728 749 1.054231 TGCAAACCATTCATGCCCAA 58.946 45.000 0.00 0.00 39.31 4.12
729 750 0.321021 GTGCAAACCATTCATGCCCA 59.679 50.000 0.00 0.00 39.31 5.36
730 751 0.737019 CGTGCAAACCATTCATGCCC 60.737 55.000 0.00 0.00 39.31 5.36
731 752 0.038343 ACGTGCAAACCATTCATGCC 60.038 50.000 0.00 0.00 39.31 4.40
732 753 1.062258 CACGTGCAAACCATTCATGC 58.938 50.000 0.82 0.00 40.45 4.06
733 754 2.318578 GTCACGTGCAAACCATTCATG 58.681 47.619 11.67 0.00 0.00 3.07
734 755 1.269448 GGTCACGTGCAAACCATTCAT 59.731 47.619 17.52 0.00 33.11 2.57
735 756 0.665835 GGTCACGTGCAAACCATTCA 59.334 50.000 17.52 0.00 33.11 2.57
736 757 0.385473 CGGTCACGTGCAAACCATTC 60.385 55.000 20.96 0.00 32.35 2.67
737 758 1.652012 CGGTCACGTGCAAACCATT 59.348 52.632 20.96 0.00 32.35 3.16
738 759 2.258013 CCGGTCACGTGCAAACCAT 61.258 57.895 20.96 0.00 38.78 3.55
739 760 2.871216 TTCCGGTCACGTGCAAACCA 62.871 55.000 20.96 3.82 38.78 3.67
740 761 1.716826 TTTCCGGTCACGTGCAAACC 61.717 55.000 11.67 12.77 38.78 3.27
741 762 0.316689 CTTTCCGGTCACGTGCAAAC 60.317 55.000 11.67 3.73 38.78 2.93
742 763 0.462225 TCTTTCCGGTCACGTGCAAA 60.462 50.000 11.67 3.78 38.78 3.68
743 764 0.462225 TTCTTTCCGGTCACGTGCAA 60.462 50.000 11.67 0.00 38.78 4.08
744 765 0.250124 ATTCTTTCCGGTCACGTGCA 60.250 50.000 11.67 0.00 38.78 4.57
745 766 0.442699 GATTCTTTCCGGTCACGTGC 59.557 55.000 11.67 6.03 38.78 5.34
746 767 0.713883 CGATTCTTTCCGGTCACGTG 59.286 55.000 9.94 9.94 38.78 4.49
747 768 0.389426 CCGATTCTTTCCGGTCACGT 60.389 55.000 0.00 0.00 40.78 4.49
748 769 1.082117 CCCGATTCTTTCCGGTCACG 61.082 60.000 0.00 0.00 43.93 4.35
749 770 0.248289 TCCCGATTCTTTCCGGTCAC 59.752 55.000 0.00 0.00 43.93 3.67
750 771 0.978151 TTCCCGATTCTTTCCGGTCA 59.022 50.000 0.00 0.00 43.93 4.02
751 772 1.206371 TCTTCCCGATTCTTTCCGGTC 59.794 52.381 0.00 0.00 43.93 4.79
752 773 1.272807 TCTTCCCGATTCTTTCCGGT 58.727 50.000 0.00 0.00 43.93 5.28
753 774 2.396590 TTCTTCCCGATTCTTTCCGG 57.603 50.000 0.00 0.00 44.94 5.14
754 775 3.424433 CGTTTTCTTCCCGATTCTTTCCG 60.424 47.826 0.00 0.00 0.00 4.30
755 776 3.749609 TCGTTTTCTTCCCGATTCTTTCC 59.250 43.478 0.00 0.00 0.00 3.13
756 777 5.178809 TCTTCGTTTTCTTCCCGATTCTTTC 59.821 40.000 0.00 0.00 0.00 2.62
757 778 5.061179 TCTTCGTTTTCTTCCCGATTCTTT 58.939 37.500 0.00 0.00 0.00 2.52
758 779 4.638304 TCTTCGTTTTCTTCCCGATTCTT 58.362 39.130 0.00 0.00 0.00 2.52
759 780 4.021368 TCTCTTCGTTTTCTTCCCGATTCT 60.021 41.667 0.00 0.00 0.00 2.40
760 781 4.243270 TCTCTTCGTTTTCTTCCCGATTC 58.757 43.478 0.00 0.00 0.00 2.52
761 782 4.267349 TCTCTTCGTTTTCTTCCCGATT 57.733 40.909 0.00 0.00 0.00 3.34
762 783 3.955650 TCTCTTCGTTTTCTTCCCGAT 57.044 42.857 0.00 0.00 0.00 4.18
763 784 3.738830 TTCTCTTCGTTTTCTTCCCGA 57.261 42.857 0.00 0.00 0.00 5.14
767 788 5.433005 CCGAGTTTTCTCTTCGTTTTCTTC 58.567 41.667 0.00 0.00 44.16 2.87
773 794 2.234300 TGCCGAGTTTTCTCTTCGTT 57.766 45.000 0.00 0.00 44.16 3.85
776 797 4.813296 TCTTTTGCCGAGTTTTCTCTTC 57.187 40.909 0.00 0.00 44.16 2.87
794 815 3.209410 CTTTGCCATCCGAGCTTATCTT 58.791 45.455 0.00 0.00 0.00 2.40
811 832 2.046285 GGGACCATCCACCGCTTTG 61.046 63.158 0.00 0.00 38.64 2.77
822 843 1.301401 CGTGTCAACGTGGGACCAT 60.301 57.895 15.56 0.00 44.93 3.55
860 881 4.147449 CACTCGGGCTGCATCGGA 62.147 66.667 13.06 1.40 0.00 4.55
875 896 2.300850 TACGGCTGGTATTCGGGCAC 62.301 60.000 0.00 0.00 46.58 5.01
893 914 1.366111 GCCTCCGCGTGAAAAGCATA 61.366 55.000 4.92 0.00 43.29 3.14
918 940 3.060000 GCGGCGGCTAGGGTTTTT 61.060 61.111 9.78 0.00 35.83 1.94
937 962 3.467803 CTTTATTCCCTCGGGATGTGTC 58.532 50.000 5.34 0.00 44.74 3.67
949 974 3.945640 TGAGGTTAGGGCTTTATTCCC 57.054 47.619 0.00 0.00 44.25 3.97
959 984 1.522569 CTCGGCCTTGAGGTTAGGG 59.477 63.158 0.00 0.00 37.57 3.53
976 1001 2.367512 GGGGAGGGATGTCAGCCT 60.368 66.667 7.15 0.00 0.00 4.58
995 1020 2.106332 CGGCGGCTAGGTGTAAGG 59.894 66.667 7.61 0.00 0.00 2.69
1179 1207 0.179097 GGCTGATCTCGGAGAACCAC 60.179 60.000 12.40 4.16 34.09 4.16
1248 1276 0.606604 GGTAGTCCGACTTGCCTTGA 59.393 55.000 6.31 0.00 0.00 3.02
1270 1298 1.021968 GACTGGAAAACCAGCACGTT 58.978 50.000 15.02 0.00 41.12 3.99
1538 1566 4.452733 CGAACCCGAGGGCCAGAC 62.453 72.222 6.18 0.00 39.32 3.51
1664 1692 2.743928 CGAACAGCTCCTGGGCAC 60.744 66.667 9.36 0.00 35.51 5.01
1860 1888 0.035317 AAGACAGGATCAGTTGCGCA 59.965 50.000 5.66 5.66 0.00 6.09
1932 1975 2.353376 CCGCTGCAACAACAACCG 60.353 61.111 0.00 0.00 0.00 4.44
2150 2193 3.140325 TGGTTTCAGTGACCATCTTCC 57.860 47.619 0.00 0.00 42.06 3.46
2187 2254 2.159226 ACGCTAAGACAGATTTCTCCCG 60.159 50.000 0.00 0.00 0.00 5.14
2348 2822 3.625649 AAGAAAACTGCAGGGCAAAAA 57.374 38.095 19.93 0.00 38.41 1.94
2453 2928 4.228895 GTCCTTTCTTTAATACCCCCTCCA 59.771 45.833 0.00 0.00 0.00 3.86
2490 2965 2.229543 CCCCCTAAACGCAGTAAAAACC 59.770 50.000 0.00 0.00 45.00 3.27
2619 3241 1.057275 TGTGTCCACAAGGCAGGGTA 61.057 55.000 0.00 0.00 38.56 3.69
2642 3264 7.944554 TCTTCCTCTGATACAAAAATTCAACCT 59.055 33.333 0.00 0.00 0.00 3.50
2751 7163 2.416547 CTCCGTTAAACATGCACTCCTG 59.583 50.000 0.00 0.00 0.00 3.86
2789 7388 4.645252 TCCCCACCCCACCCCAAT 62.645 66.667 0.00 0.00 0.00 3.16
2851 7462 5.918576 CGTCCGTCTTATATTATGAACTGCA 59.081 40.000 0.00 0.00 0.00 4.41
2852 7463 5.919141 ACGTCCGTCTTATATTATGAACTGC 59.081 40.000 0.00 0.00 0.00 4.40
2853 7464 7.925703 AACGTCCGTCTTATATTATGAACTG 57.074 36.000 0.00 0.00 0.00 3.16
2854 7465 8.937634 AAAACGTCCGTCTTATATTATGAACT 57.062 30.769 0.00 0.00 0.00 3.01
2872 8146 5.147162 CCTCTATTGAACTGCAAAAACGTC 58.853 41.667 0.00 0.00 40.48 4.34
2873 8147 4.578928 ACCTCTATTGAACTGCAAAAACGT 59.421 37.500 0.00 0.00 40.48 3.99
2874 8148 5.108385 ACCTCTATTGAACTGCAAAAACG 57.892 39.130 0.00 0.00 40.48 3.60
2875 8149 7.203255 ACTACCTCTATTGAACTGCAAAAAC 57.797 36.000 0.00 0.00 40.48 2.43
2890 8164 9.401058 GTTGTCCTGTAACTTATACTACCTCTA 57.599 37.037 0.00 0.00 0.00 2.43
2981 8294 4.804597 TGCTAGTGATATGGACTACCTGT 58.195 43.478 0.00 0.00 37.04 4.00
2982 8295 4.830046 ACTGCTAGTGATATGGACTACCTG 59.170 45.833 0.00 0.00 37.04 4.00
2983 8296 5.068215 ACTGCTAGTGATATGGACTACCT 57.932 43.478 0.00 0.00 37.04 3.08
2984 8297 5.768662 TGTACTGCTAGTGATATGGACTACC 59.231 44.000 0.00 0.00 0.00 3.18
2985 8298 6.879276 TGTACTGCTAGTGATATGGACTAC 57.121 41.667 0.00 0.00 0.00 2.73
2986 8299 6.831868 TGTTGTACTGCTAGTGATATGGACTA 59.168 38.462 0.00 0.00 0.00 2.59
3028 8341 3.492102 CCGGATGGTTTCACTGGATAT 57.508 47.619 0.00 0.00 32.36 1.63
3067 8380 1.611851 ATGATGGCCCCCGCAAAAA 60.612 52.632 0.00 0.00 36.38 1.94
3068 8381 2.038651 ATGATGGCCCCCGCAAAA 59.961 55.556 0.00 0.00 36.38 2.44
3069 8382 2.441901 GATGATGGCCCCCGCAAA 60.442 61.111 0.00 0.00 36.38 3.68
3070 8383 4.521292 GGATGATGGCCCCCGCAA 62.521 66.667 0.00 0.00 36.38 4.85
3073 8386 4.935495 CACGGATGATGGCCCCCG 62.935 72.222 0.00 8.19 46.65 5.73
3074 8387 3.358932 AACACGGATGATGGCCCCC 62.359 63.158 0.00 0.00 0.00 5.40
3075 8388 1.823899 GAACACGGATGATGGCCCC 60.824 63.158 0.00 0.00 0.00 5.80
3076 8389 0.466189 ATGAACACGGATGATGGCCC 60.466 55.000 0.00 0.00 0.00 5.80
3077 8390 0.947244 GATGAACACGGATGATGGCC 59.053 55.000 0.00 0.00 0.00 5.36
3078 8391 1.667236 TGATGAACACGGATGATGGC 58.333 50.000 0.00 0.00 0.00 4.40
3079 8392 3.249320 GTCATGATGAACACGGATGATGG 59.751 47.826 0.00 0.00 0.00 3.51
3080 8393 4.124970 AGTCATGATGAACACGGATGATG 58.875 43.478 0.00 0.00 0.00 3.07
3081 8394 4.412796 AGTCATGATGAACACGGATGAT 57.587 40.909 0.00 0.00 0.00 2.45
3082 8395 3.893326 AGTCATGATGAACACGGATGA 57.107 42.857 0.00 0.00 0.00 2.92
3083 8396 7.622880 GCAATATAGTCATGATGAACACGGATG 60.623 40.741 0.00 0.00 0.00 3.51
3084 8397 6.369890 GCAATATAGTCATGATGAACACGGAT 59.630 38.462 0.00 0.00 0.00 4.18
3085 8398 5.696270 GCAATATAGTCATGATGAACACGGA 59.304 40.000 0.00 0.00 0.00 4.69
3086 8399 5.698089 AGCAATATAGTCATGATGAACACGG 59.302 40.000 0.00 0.00 0.00 4.94
3087 8400 6.775939 AGCAATATAGTCATGATGAACACG 57.224 37.500 0.00 0.00 0.00 4.49
3151 8464 6.238103 CGACAAATGGTAGAACATATTCGCTT 60.238 38.462 0.00 0.00 40.04 4.68
3159 8472 7.739498 AAAAGTACGACAAATGGTAGAACAT 57.261 32.000 0.00 0.00 0.00 2.71
3176 8489 6.708502 AGCTCAGAAGGAAGAAGAAAAAGTAC 59.291 38.462 0.00 0.00 0.00 2.73
3183 8496 4.383552 GGCATAGCTCAGAAGGAAGAAGAA 60.384 45.833 0.00 0.00 0.00 2.52
3185 8498 3.118482 TGGCATAGCTCAGAAGGAAGAAG 60.118 47.826 0.00 0.00 0.00 2.85
3188 8501 2.170187 AGTGGCATAGCTCAGAAGGAAG 59.830 50.000 0.00 0.00 0.00 3.46
3192 8505 1.537776 CGGAGTGGCATAGCTCAGAAG 60.538 57.143 6.02 0.00 33.66 2.85
3207 8520 4.463070 GATCTCTAACCCTAACTCGGAGT 58.537 47.826 4.45 4.45 0.00 3.85
3215 8528 1.062734 TGGGGCGATCTCTAACCCTAA 60.063 52.381 0.00 0.00 42.40 2.69
3221 8534 1.580059 AACCTTGGGGCGATCTCTAA 58.420 50.000 0.00 0.00 35.63 2.10
3227 8540 1.613061 CCCTTAACCTTGGGGCGAT 59.387 57.895 0.00 0.00 39.76 4.58
3228 8541 3.083386 CCCTTAACCTTGGGGCGA 58.917 61.111 0.00 0.00 39.76 5.54
3232 8545 0.251608 CACACCCCCTTAACCTTGGG 60.252 60.000 0.00 0.00 44.03 4.12
3233 8546 0.481128 ACACACCCCCTTAACCTTGG 59.519 55.000 0.00 0.00 0.00 3.61
3234 8547 1.133606 ACACACACCCCCTTAACCTTG 60.134 52.381 0.00 0.00 0.00 3.61
3235 8548 1.133606 CACACACACCCCCTTAACCTT 60.134 52.381 0.00 0.00 0.00 3.50
3236 8549 0.476771 CACACACACCCCCTTAACCT 59.523 55.000 0.00 0.00 0.00 3.50
3237 8550 0.475044 TCACACACACCCCCTTAACC 59.525 55.000 0.00 0.00 0.00 2.85
3238 8551 1.544759 CCTCACACACACCCCCTTAAC 60.545 57.143 0.00 0.00 0.00 2.01
3239 8552 0.768622 CCTCACACACACCCCCTTAA 59.231 55.000 0.00 0.00 0.00 1.85
3240 8553 0.400815 ACCTCACACACACCCCCTTA 60.401 55.000 0.00 0.00 0.00 2.69
3241 8554 0.400815 TACCTCACACACACCCCCTT 60.401 55.000 0.00 0.00 0.00 3.95
3242 8555 0.400815 TTACCTCACACACACCCCCT 60.401 55.000 0.00 0.00 0.00 4.79
3243 8556 0.036306 CTTACCTCACACACACCCCC 59.964 60.000 0.00 0.00 0.00 5.40
3244 8557 0.763035 ACTTACCTCACACACACCCC 59.237 55.000 0.00 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.