Multiple sequence alignment - TraesCS7A01G264800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G264800 chr7A 100.000 7544 0 0 1 7544 264333547 264326004 0.000000e+00 13932.0
1 TraesCS7A01G264800 chr7A 93.281 253 14 3 198 448 477190972 477190721 3.320000e-98 370.0
2 TraesCS7A01G264800 chr7A 92.562 121 8 1 45 164 477191235 477191115 1.010000e-38 172.0
3 TraesCS7A01G264800 chr7B 96.295 6343 146 40 452 6767 223359199 223352919 0.000000e+00 10329.0
4 TraesCS7A01G264800 chr7B 80.105 191 22 5 255 436 158396504 158396321 2.210000e-25 128.0
5 TraesCS7A01G264800 chr7D 96.267 6268 157 40 526 6767 246838241 246832025 0.000000e+00 10207.0
6 TraesCS7A01G264800 chr2A 97.927 772 14 2 6774 7544 738352086 738352856 0.000000e+00 1336.0
7 TraesCS7A01G264800 chr4A 97.804 774 15 2 6771 7544 662326675 662327446 0.000000e+00 1334.0
8 TraesCS7A01G264800 chr4A 78.462 260 46 4 193 445 241029497 241029241 2.180000e-35 161.0
9 TraesCS7A01G264800 chr4A 78.077 260 47 4 193 445 241030270 241030014 1.010000e-33 156.0
10 TraesCS7A01G264800 chr5B 97.426 777 19 1 6768 7544 697825943 697826718 0.000000e+00 1323.0
11 TraesCS7A01G264800 chr5B 80.193 207 25 7 240 437 637444288 637444089 2.840000e-29 141.0
12 TraesCS7A01G264800 chr1B 97.665 771 17 1 6774 7544 95401198 95400429 0.000000e+00 1323.0
13 TraesCS7A01G264800 chr1B 88.039 719 48 16 4819 5527 641627774 641628464 0.000000e+00 817.0
14 TraesCS7A01G264800 chr1B 92.857 98 6 1 4478 4575 641627367 641627463 2.840000e-29 141.0
15 TraesCS7A01G264800 chr1B 78.341 217 29 11 240 446 326219604 326219812 2.860000e-24 124.0
16 TraesCS7A01G264800 chr3B 93.359 768 49 2 6777 7544 603577723 603578488 0.000000e+00 1134.0
17 TraesCS7A01G264800 chr3B 88.496 452 34 6 3 436 749769260 749769711 1.440000e-146 531.0
18 TraesCS7A01G264800 chr2D 93.170 776 48 3 6772 7544 12896678 12895905 0.000000e+00 1134.0
19 TraesCS7A01G264800 chr2D 100.000 28 0 0 325 352 72774392 72774419 1.400000e-02 52.8
20 TraesCS7A01G264800 chr1A 93.023 774 50 2 6774 7544 547342622 547343394 0.000000e+00 1127.0
21 TraesCS7A01G264800 chr2B 92.904 761 51 2 6778 7538 722829251 722828494 0.000000e+00 1103.0
22 TraesCS7A01G264800 chr2B 88.079 453 34 8 3 437 91335339 91335789 3.120000e-143 520.0
23 TraesCS7A01G264800 chr6D 92.367 773 55 2 6775 7544 39585117 39585888 0.000000e+00 1098.0
24 TraesCS7A01G264800 chr6A 93.750 448 23 3 1 446 602925356 602924912 0.000000e+00 667.0
25 TraesCS7A01G264800 chr1D 92.400 250 12 5 5283 5532 464860673 464860915 4.330000e-92 350.0
26 TraesCS7A01G264800 chr1D 92.063 63 4 1 4478 4540 464860626 464860687 3.750000e-13 87.9
27 TraesCS7A01G264800 chr6B 87.719 228 22 1 215 436 420842278 420842505 2.090000e-65 261.0
28 TraesCS7A01G264800 chr6B 78.238 193 26 9 255 438 561640044 561639859 8.000000e-20 110.0
29 TraesCS7A01G264800 chr5A 80.392 153 23 4 291 437 581625806 581625655 8.000000e-20 110.0
30 TraesCS7A01G264800 chr5D 94.595 37 1 1 3168 3204 5115855 5115890 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G264800 chr7A 264326004 264333547 7543 True 13932 13932 100.0000 1 7544 1 chr7A.!!$R1 7543
1 TraesCS7A01G264800 chr7A 477190721 477191235 514 True 271 370 92.9215 45 448 2 chr7A.!!$R2 403
2 TraesCS7A01G264800 chr7B 223352919 223359199 6280 True 10329 10329 96.2950 452 6767 1 chr7B.!!$R2 6315
3 TraesCS7A01G264800 chr7D 246832025 246838241 6216 True 10207 10207 96.2670 526 6767 1 chr7D.!!$R1 6241
4 TraesCS7A01G264800 chr2A 738352086 738352856 770 False 1336 1336 97.9270 6774 7544 1 chr2A.!!$F1 770
5 TraesCS7A01G264800 chr4A 662326675 662327446 771 False 1334 1334 97.8040 6771 7544 1 chr4A.!!$F1 773
6 TraesCS7A01G264800 chr5B 697825943 697826718 775 False 1323 1323 97.4260 6768 7544 1 chr5B.!!$F1 776
7 TraesCS7A01G264800 chr1B 95400429 95401198 769 True 1323 1323 97.6650 6774 7544 1 chr1B.!!$R1 770
8 TraesCS7A01G264800 chr1B 641627367 641628464 1097 False 479 817 90.4480 4478 5527 2 chr1B.!!$F2 1049
9 TraesCS7A01G264800 chr3B 603577723 603578488 765 False 1134 1134 93.3590 6777 7544 1 chr3B.!!$F1 767
10 TraesCS7A01G264800 chr2D 12895905 12896678 773 True 1134 1134 93.1700 6772 7544 1 chr2D.!!$R1 772
11 TraesCS7A01G264800 chr1A 547342622 547343394 772 False 1127 1127 93.0230 6774 7544 1 chr1A.!!$F1 770
12 TraesCS7A01G264800 chr2B 722828494 722829251 757 True 1103 1103 92.9040 6778 7538 1 chr2B.!!$R1 760
13 TraesCS7A01G264800 chr6D 39585117 39585888 771 False 1098 1098 92.3670 6775 7544 1 chr6D.!!$F1 769

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 255 0.039180 TGGACAAGGGACTCTCGCTA 59.961 55.000 0.00 0.00 38.84 4.26 F
284 300 0.322906 TATCGTTGCAACCATGGGCA 60.323 50.000 23.42 14.31 38.46 5.36 F
417 433 0.380378 TTTTTATCCCGCTGCATCGC 59.620 50.000 4.01 0.00 0.00 4.58 F
1160 1189 0.462047 GATGTCTGCAAGGTACGGGG 60.462 60.000 0.00 0.00 0.00 5.73 F
2011 2058 0.249073 AATCTCGGCGTCTTCATCCG 60.249 55.000 6.85 0.00 44.16 4.18 F
2421 2471 2.034124 CACAAATGGCTTATCCCCTGG 58.966 52.381 0.00 0.00 0.00 4.45 F
3055 3105 6.012157 AGGCTGTGCTTATTATTCATATCCCT 60.012 38.462 0.00 0.00 0.00 4.20 F
4780 4834 1.266718 TGTTTTCGAATCTGTGCTGCC 59.733 47.619 0.00 0.00 0.00 4.85 F
5649 5948 0.250553 CAGCGGGGTAAAACCTCACA 60.251 55.000 0.00 0.00 39.25 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1175 1205 0.323816 GAAGGGGAAAGAAGGCAGGG 60.324 60.000 0.00 0.0 0.00 4.45 R
1178 1208 0.324943 CGAGAAGGGGAAAGAAGGCA 59.675 55.000 0.00 0.0 0.00 4.75 R
1521 1551 0.453390 GCCAGAGGATTTGAAAGCGG 59.547 55.000 0.00 0.0 0.00 5.52 R
2937 2987 0.453793 AGAGAAGATCAGGCGACACG 59.546 55.000 0.00 0.0 0.00 4.49 R
3055 3105 2.489971 CTGAAGTTCCTTAACCGCACA 58.510 47.619 0.00 0.0 36.15 4.57 R
3546 3597 2.559668 CAAGCCCTCTGCATCAAAGAAA 59.440 45.455 0.00 0.0 44.83 2.52 R
5018 5311 1.517242 CCTGAAGAGTTCACACAGGC 58.483 55.000 0.00 0.0 40.90 4.85 R
5677 5976 0.037419 CAGCCAATTGAAAACCGGGG 60.037 55.000 6.32 0.0 0.00 5.73 R
7034 7346 1.733402 CTGTTTGCGGGTTGGCTTCA 61.733 55.000 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 2.656137 CGAATAACGGCTACACGCA 58.344 52.632 0.00 0.00 41.67 5.24
37 38 1.205657 CGAATAACGGCTACACGCAT 58.794 50.000 0.00 0.00 41.67 4.73
38 39 2.387185 CGAATAACGGCTACACGCATA 58.613 47.619 0.00 0.00 41.67 3.14
39 40 2.152489 CGAATAACGGCTACACGCATAC 59.848 50.000 0.00 0.00 41.67 2.39
40 41 2.144482 ATAACGGCTACACGCATACC 57.856 50.000 0.00 0.00 41.67 2.73
42 43 1.936436 AACGGCTACACGCATACCGA 61.936 55.000 6.76 0.00 46.71 4.69
43 44 1.007734 CGGCTACACGCATACCGAT 60.008 57.895 0.00 0.00 46.71 4.18
51 52 3.852286 ACACGCATACCGATTAGACAAA 58.148 40.909 0.00 0.00 41.02 2.83
55 56 4.873827 ACGCATACCGATTAGACAAATGTT 59.126 37.500 0.00 0.00 41.02 2.71
148 150 6.866248 GGTGGTGTCAACTGTAATTAAAATGG 59.134 38.462 0.00 0.00 0.00 3.16
167 183 4.967084 TGGGATTACAGGTTATGCGTAT 57.033 40.909 0.00 0.00 0.00 3.06
187 203 1.140852 TCGCCCTTGGAATGGACATAG 59.859 52.381 0.00 0.00 31.60 2.23
188 204 1.140852 CGCCCTTGGAATGGACATAGA 59.859 52.381 0.00 0.00 31.60 1.98
189 205 2.421388 CGCCCTTGGAATGGACATAGAA 60.421 50.000 0.00 0.00 31.60 2.10
190 206 2.952310 GCCCTTGGAATGGACATAGAAC 59.048 50.000 0.00 0.00 31.60 3.01
191 207 3.555966 CCCTTGGAATGGACATAGAACC 58.444 50.000 0.00 0.00 31.60 3.62
192 208 3.203040 CCCTTGGAATGGACATAGAACCT 59.797 47.826 0.00 0.00 31.60 3.50
193 209 4.202441 CCTTGGAATGGACATAGAACCTG 58.798 47.826 0.00 0.00 31.60 4.00
194 210 4.324563 CCTTGGAATGGACATAGAACCTGT 60.325 45.833 0.00 0.00 31.60 4.00
195 211 4.220693 TGGAATGGACATAGAACCTGTG 57.779 45.455 0.00 0.00 0.00 3.66
196 212 2.945668 GGAATGGACATAGAACCTGTGC 59.054 50.000 0.00 0.00 35.72 4.57
197 213 3.609853 GAATGGACATAGAACCTGTGCA 58.390 45.455 0.19 0.19 46.73 4.57
198 214 2.768253 TGGACATAGAACCTGTGCAG 57.232 50.000 0.00 0.00 39.60 4.41
199 215 2.256306 TGGACATAGAACCTGTGCAGA 58.744 47.619 0.02 0.00 39.60 4.26
200 216 2.637382 TGGACATAGAACCTGTGCAGAA 59.363 45.455 0.02 0.00 39.60 3.02
201 217 3.003480 GGACATAGAACCTGTGCAGAAC 58.997 50.000 0.02 0.00 35.31 3.01
202 218 3.003480 GACATAGAACCTGTGCAGAACC 58.997 50.000 0.02 0.00 0.00 3.62
203 219 2.639839 ACATAGAACCTGTGCAGAACCT 59.360 45.455 0.02 0.00 0.00 3.50
204 220 3.838317 ACATAGAACCTGTGCAGAACCTA 59.162 43.478 0.02 0.03 0.00 3.08
205 221 4.081420 ACATAGAACCTGTGCAGAACCTAG 60.081 45.833 0.02 0.00 0.00 3.02
206 222 2.609747 AGAACCTGTGCAGAACCTAGA 58.390 47.619 0.02 0.00 0.00 2.43
207 223 2.972713 AGAACCTGTGCAGAACCTAGAA 59.027 45.455 0.02 0.00 0.00 2.10
208 224 2.841442 ACCTGTGCAGAACCTAGAAC 57.159 50.000 0.02 0.00 0.00 3.01
209 225 1.348036 ACCTGTGCAGAACCTAGAACC 59.652 52.381 0.02 0.00 0.00 3.62
210 226 1.347707 CCTGTGCAGAACCTAGAACCA 59.652 52.381 0.02 0.00 0.00 3.67
211 227 2.224523 CCTGTGCAGAACCTAGAACCAA 60.225 50.000 0.02 0.00 0.00 3.67
212 228 3.070018 CTGTGCAGAACCTAGAACCAAG 58.930 50.000 0.00 0.00 0.00 3.61
213 229 2.703536 TGTGCAGAACCTAGAACCAAGA 59.296 45.455 0.00 0.00 0.00 3.02
214 230 3.327757 TGTGCAGAACCTAGAACCAAGAT 59.672 43.478 0.00 0.00 0.00 2.40
215 231 3.686726 GTGCAGAACCTAGAACCAAGATG 59.313 47.826 0.00 0.00 0.00 2.90
216 232 3.327757 TGCAGAACCTAGAACCAAGATGT 59.672 43.478 0.00 0.00 0.00 3.06
217 233 4.202461 TGCAGAACCTAGAACCAAGATGTT 60.202 41.667 0.00 0.00 0.00 2.71
218 234 4.154918 GCAGAACCTAGAACCAAGATGTTG 59.845 45.833 0.00 0.00 0.00 3.33
219 235 5.551233 CAGAACCTAGAACCAAGATGTTGA 58.449 41.667 3.74 0.00 35.46 3.18
220 236 6.176183 CAGAACCTAGAACCAAGATGTTGAT 58.824 40.000 3.74 0.00 35.46 2.57
221 237 6.093219 CAGAACCTAGAACCAAGATGTTGATG 59.907 42.308 3.74 0.00 35.46 3.07
222 238 4.848357 ACCTAGAACCAAGATGTTGATGG 58.152 43.478 3.74 0.00 40.16 3.51
223 239 4.536090 ACCTAGAACCAAGATGTTGATGGA 59.464 41.667 3.74 0.00 37.66 3.41
224 240 4.878397 CCTAGAACCAAGATGTTGATGGAC 59.122 45.833 3.74 0.00 37.66 4.02
225 241 4.371624 AGAACCAAGATGTTGATGGACA 57.628 40.909 3.74 0.00 37.66 4.02
226 242 4.728772 AGAACCAAGATGTTGATGGACAA 58.271 39.130 3.74 0.00 37.66 3.18
227 243 4.763793 AGAACCAAGATGTTGATGGACAAG 59.236 41.667 3.74 0.00 39.30 3.16
228 244 3.424703 ACCAAGATGTTGATGGACAAGG 58.575 45.455 3.74 0.00 39.30 3.61
229 245 2.756760 CCAAGATGTTGATGGACAAGGG 59.243 50.000 3.74 0.00 39.30 3.95
230 246 3.561960 CCAAGATGTTGATGGACAAGGGA 60.562 47.826 3.74 0.00 39.30 4.20
231 247 3.356529 AGATGTTGATGGACAAGGGAC 57.643 47.619 0.00 0.00 39.30 4.46
232 248 4.808665 CAAGATGTTGATGGACAAGGGACT 60.809 45.833 0.00 0.00 39.30 3.85
233 249 2.859165 TGTTGATGGACAAGGGACTC 57.141 50.000 0.00 0.00 38.49 3.36
234 250 2.338809 TGTTGATGGACAAGGGACTCT 58.661 47.619 0.00 0.00 38.49 3.24
235 251 2.303022 TGTTGATGGACAAGGGACTCTC 59.697 50.000 0.00 0.00 38.49 3.20
236 252 1.186200 TGATGGACAAGGGACTCTCG 58.814 55.000 0.00 0.00 38.49 4.04
237 253 0.179097 GATGGACAAGGGACTCTCGC 60.179 60.000 0.00 0.00 38.49 5.03
238 254 0.616111 ATGGACAAGGGACTCTCGCT 60.616 55.000 0.00 0.00 41.77 4.93
239 255 0.039180 TGGACAAGGGACTCTCGCTA 59.961 55.000 0.00 0.00 38.84 4.26
240 256 1.183549 GGACAAGGGACTCTCGCTAA 58.816 55.000 0.00 0.00 38.84 3.09
241 257 1.549170 GGACAAGGGACTCTCGCTAAA 59.451 52.381 0.00 0.00 38.84 1.85
242 258 2.168728 GGACAAGGGACTCTCGCTAAAT 59.831 50.000 0.00 0.00 38.84 1.40
243 259 3.369576 GGACAAGGGACTCTCGCTAAATT 60.370 47.826 0.00 0.00 38.84 1.82
244 260 4.254492 GACAAGGGACTCTCGCTAAATTT 58.746 43.478 0.00 0.00 38.84 1.82
245 261 5.416271 ACAAGGGACTCTCGCTAAATTTA 57.584 39.130 0.00 0.00 38.84 1.40
246 262 5.801380 ACAAGGGACTCTCGCTAAATTTAA 58.199 37.500 0.00 0.00 38.84 1.52
247 263 6.235664 ACAAGGGACTCTCGCTAAATTTAAA 58.764 36.000 0.00 0.00 38.84 1.52
248 264 6.884836 ACAAGGGACTCTCGCTAAATTTAAAT 59.115 34.615 0.00 0.00 38.84 1.40
249 265 8.044908 ACAAGGGACTCTCGCTAAATTTAAATA 58.955 33.333 0.01 0.00 38.84 1.40
250 266 8.336080 CAAGGGACTCTCGCTAAATTTAAATAC 58.664 37.037 0.01 0.00 38.84 1.89
251 267 7.562135 AGGGACTCTCGCTAAATTTAAATACA 58.438 34.615 0.01 0.00 37.94 2.29
252 268 7.494952 AGGGACTCTCGCTAAATTTAAATACAC 59.505 37.037 0.01 0.00 37.94 2.90
253 269 7.279313 GGGACTCTCGCTAAATTTAAATACACA 59.721 37.037 0.01 0.00 0.00 3.72
254 270 8.827677 GGACTCTCGCTAAATTTAAATACACAT 58.172 33.333 0.01 0.00 0.00 3.21
255 271 9.851043 GACTCTCGCTAAATTTAAATACACATC 57.149 33.333 0.01 0.00 0.00 3.06
256 272 9.378551 ACTCTCGCTAAATTTAAATACACATCA 57.621 29.630 0.01 0.00 0.00 3.07
273 289 6.546395 ACACATCAATTCTTTCTATCGTTGC 58.454 36.000 0.00 0.00 0.00 4.17
274 290 6.149308 ACACATCAATTCTTTCTATCGTTGCA 59.851 34.615 0.00 0.00 0.00 4.08
275 291 7.022979 CACATCAATTCTTTCTATCGTTGCAA 58.977 34.615 0.00 0.00 0.00 4.08
276 292 7.007725 CACATCAATTCTTTCTATCGTTGCAAC 59.992 37.037 19.89 19.89 0.00 4.17
277 293 5.938322 TCAATTCTTTCTATCGTTGCAACC 58.062 37.500 23.42 6.48 0.00 3.77
278 294 5.471797 TCAATTCTTTCTATCGTTGCAACCA 59.528 36.000 23.42 12.12 0.00 3.67
279 295 6.150976 TCAATTCTTTCTATCGTTGCAACCAT 59.849 34.615 23.42 18.72 0.00 3.55
280 296 4.944962 TCTTTCTATCGTTGCAACCATG 57.055 40.909 23.42 10.16 0.00 3.66
281 297 3.689161 TCTTTCTATCGTTGCAACCATGG 59.311 43.478 23.42 18.01 0.00 3.66
282 298 2.036958 TCTATCGTTGCAACCATGGG 57.963 50.000 23.42 13.31 0.00 4.00
283 299 0.381801 CTATCGTTGCAACCATGGGC 59.618 55.000 23.42 11.53 0.00 5.36
284 300 0.322906 TATCGTTGCAACCATGGGCA 60.323 50.000 23.42 14.31 38.46 5.36
285 301 1.876497 ATCGTTGCAACCATGGGCAC 61.876 55.000 23.42 10.32 40.23 5.01
312 328 6.875926 GCTATTTGCTACCATTGTCTTTTG 57.124 37.500 0.00 0.00 38.95 2.44
313 329 6.620678 GCTATTTGCTACCATTGTCTTTTGA 58.379 36.000 0.00 0.00 38.95 2.69
314 330 7.260603 GCTATTTGCTACCATTGTCTTTTGAT 58.739 34.615 0.00 0.00 38.95 2.57
315 331 7.433425 GCTATTTGCTACCATTGTCTTTTGATC 59.567 37.037 0.00 0.00 38.95 2.92
316 332 6.647334 TTTGCTACCATTGTCTTTTGATCA 57.353 33.333 0.00 0.00 0.00 2.92
317 333 6.647334 TTGCTACCATTGTCTTTTGATCAA 57.353 33.333 3.38 3.38 0.00 2.57
318 334 6.839124 TGCTACCATTGTCTTTTGATCAAT 57.161 33.333 9.40 0.00 33.61 2.57
319 335 7.230849 TGCTACCATTGTCTTTTGATCAATT 57.769 32.000 9.40 0.00 32.20 2.32
320 336 7.315142 TGCTACCATTGTCTTTTGATCAATTC 58.685 34.615 9.40 1.37 32.20 2.17
321 337 7.177216 TGCTACCATTGTCTTTTGATCAATTCT 59.823 33.333 9.40 0.00 32.20 2.40
322 338 7.699812 GCTACCATTGTCTTTTGATCAATTCTC 59.300 37.037 9.40 2.05 32.20 2.87
323 339 7.771927 ACCATTGTCTTTTGATCAATTCTCT 57.228 32.000 9.40 0.00 32.20 3.10
324 340 7.824672 ACCATTGTCTTTTGATCAATTCTCTC 58.175 34.615 9.40 0.00 32.20 3.20
325 341 7.449395 ACCATTGTCTTTTGATCAATTCTCTCA 59.551 33.333 9.40 2.22 32.20 3.27
326 342 8.301720 CCATTGTCTTTTGATCAATTCTCTCAA 58.698 33.333 9.40 10.43 32.20 3.02
327 343 9.687210 CATTGTCTTTTGATCAATTCTCTCAAA 57.313 29.630 9.40 0.00 37.17 2.69
336 352 9.823647 TTGATCAATTCTCTCAAATACTACCTC 57.176 33.333 3.38 0.00 0.00 3.85
337 353 8.424918 TGATCAATTCTCTCAAATACTACCTCC 58.575 37.037 0.00 0.00 0.00 4.30
338 354 6.806751 TCAATTCTCTCAAATACTACCTCCG 58.193 40.000 0.00 0.00 0.00 4.63
339 355 6.380274 TCAATTCTCTCAAATACTACCTCCGT 59.620 38.462 0.00 0.00 0.00 4.69
340 356 5.831702 TTCTCTCAAATACTACCTCCGTC 57.168 43.478 0.00 0.00 0.00 4.79
341 357 4.205587 TCTCTCAAATACTACCTCCGTCC 58.794 47.826 0.00 0.00 0.00 4.79
342 358 2.947652 TCTCAAATACTACCTCCGTCCG 59.052 50.000 0.00 0.00 0.00 4.79
343 359 2.026641 TCAAATACTACCTCCGTCCGG 58.973 52.381 0.00 0.00 0.00 5.14
344 360 1.068127 CAAATACTACCTCCGTCCGGG 59.932 57.143 0.00 0.00 35.59 5.73
345 361 0.552848 AATACTACCTCCGTCCGGGA 59.447 55.000 0.00 0.00 44.68 5.14
346 362 0.776176 ATACTACCTCCGTCCGGGAT 59.224 55.000 0.00 0.00 46.04 3.85
347 363 0.552848 TACTACCTCCGTCCGGGATT 59.447 55.000 0.00 0.00 46.04 3.01
348 364 0.552848 ACTACCTCCGTCCGGGATTA 59.447 55.000 0.00 0.00 46.04 1.75
349 365 1.063717 ACTACCTCCGTCCGGGATTAA 60.064 52.381 0.00 0.00 46.04 1.40
350 366 2.034124 CTACCTCCGTCCGGGATTAAA 58.966 52.381 0.00 0.00 46.04 1.52
351 367 1.278537 ACCTCCGTCCGGGATTAAAA 58.721 50.000 0.00 0.00 46.04 1.52
352 368 1.629861 ACCTCCGTCCGGGATTAAAAA 59.370 47.619 0.00 0.00 46.04 1.94
353 369 2.285977 CCTCCGTCCGGGATTAAAAAG 58.714 52.381 0.00 0.00 46.04 2.27
354 370 1.669265 CTCCGTCCGGGATTAAAAAGC 59.331 52.381 0.00 0.00 46.04 3.51
355 371 0.736636 CCGTCCGGGATTAAAAAGCC 59.263 55.000 0.00 0.00 38.47 4.35
363 379 3.526931 GGATTAAAAAGCCCTTGAGCC 57.473 47.619 0.00 0.00 0.00 4.70
364 380 2.831526 GGATTAAAAAGCCCTTGAGCCA 59.168 45.455 0.00 0.00 0.00 4.75
365 381 3.452264 GGATTAAAAAGCCCTTGAGCCAT 59.548 43.478 0.00 0.00 0.00 4.40
366 382 3.959535 TTAAAAAGCCCTTGAGCCATG 57.040 42.857 0.00 0.00 0.00 3.66
367 383 2.014010 AAAAAGCCCTTGAGCCATGA 57.986 45.000 0.00 0.00 0.00 3.07
368 384 2.014010 AAAAGCCCTTGAGCCATGAA 57.986 45.000 0.00 0.00 0.00 2.57
369 385 2.014010 AAAGCCCTTGAGCCATGAAA 57.986 45.000 0.00 0.00 0.00 2.69
370 386 1.260544 AAGCCCTTGAGCCATGAAAC 58.739 50.000 0.00 0.00 0.00 2.78
371 387 0.613012 AGCCCTTGAGCCATGAAACC 60.613 55.000 0.00 0.00 0.00 3.27
372 388 0.899717 GCCCTTGAGCCATGAAACCA 60.900 55.000 0.00 0.00 0.00 3.67
373 389 1.631405 CCCTTGAGCCATGAAACCAA 58.369 50.000 0.00 0.00 0.00 3.67
374 390 1.547372 CCCTTGAGCCATGAAACCAAG 59.453 52.381 0.00 2.46 35.33 3.61
375 391 2.517959 CCTTGAGCCATGAAACCAAGA 58.482 47.619 14.37 0.00 37.10 3.02
376 392 2.229784 CCTTGAGCCATGAAACCAAGAC 59.770 50.000 14.37 0.00 37.10 3.01
377 393 2.655090 TGAGCCATGAAACCAAGACA 57.345 45.000 0.00 0.00 0.00 3.41
378 394 2.229792 TGAGCCATGAAACCAAGACAC 58.770 47.619 0.00 0.00 0.00 3.67
379 395 2.158623 TGAGCCATGAAACCAAGACACT 60.159 45.455 0.00 0.00 0.00 3.55
380 396 2.227388 GAGCCATGAAACCAAGACACTG 59.773 50.000 0.00 0.00 0.00 3.66
381 397 1.956477 GCCATGAAACCAAGACACTGT 59.044 47.619 0.00 0.00 0.00 3.55
382 398 2.287788 GCCATGAAACCAAGACACTGTG 60.288 50.000 6.19 6.19 0.00 3.66
383 399 2.951642 CCATGAAACCAAGACACTGTGT 59.048 45.455 14.23 14.23 0.00 3.72
384 400 4.133820 CCATGAAACCAAGACACTGTGTA 58.866 43.478 14.31 0.00 0.00 2.90
385 401 4.214119 CCATGAAACCAAGACACTGTGTAG 59.786 45.833 14.31 6.95 0.00 2.74
386 402 3.202906 TGAAACCAAGACACTGTGTAGC 58.797 45.455 14.31 2.25 0.00 3.58
387 403 3.118408 TGAAACCAAGACACTGTGTAGCT 60.118 43.478 14.31 4.82 0.00 3.32
388 404 3.560636 AACCAAGACACTGTGTAGCTT 57.439 42.857 14.31 10.95 0.00 3.74
389 405 3.560636 ACCAAGACACTGTGTAGCTTT 57.439 42.857 14.31 3.78 0.00 3.51
390 406 3.886123 ACCAAGACACTGTGTAGCTTTT 58.114 40.909 14.31 1.13 0.00 2.27
391 407 3.627577 ACCAAGACACTGTGTAGCTTTTG 59.372 43.478 14.31 12.41 0.00 2.44
392 408 3.876914 CCAAGACACTGTGTAGCTTTTGA 59.123 43.478 14.31 0.00 0.00 2.69
393 409 4.516698 CCAAGACACTGTGTAGCTTTTGAT 59.483 41.667 14.31 0.00 0.00 2.57
394 410 5.334414 CCAAGACACTGTGTAGCTTTTGATC 60.334 44.000 14.31 0.00 0.00 2.92
395 411 4.960938 AGACACTGTGTAGCTTTTGATCA 58.039 39.130 14.31 0.00 0.00 2.92
396 412 5.368145 AGACACTGTGTAGCTTTTGATCAA 58.632 37.500 14.31 3.38 0.00 2.57
397 413 5.822519 AGACACTGTGTAGCTTTTGATCAAA 59.177 36.000 16.91 16.91 0.00 2.69
398 414 6.488006 AGACACTGTGTAGCTTTTGATCAAAT 59.512 34.615 21.10 9.60 0.00 2.32
399 415 7.013655 AGACACTGTGTAGCTTTTGATCAAATT 59.986 33.333 21.10 12.36 0.00 1.82
400 416 7.491682 ACACTGTGTAGCTTTTGATCAAATTT 58.508 30.769 21.10 12.04 0.00 1.82
401 417 7.981225 ACACTGTGTAGCTTTTGATCAAATTTT 59.019 29.630 21.10 11.73 0.00 1.82
402 418 8.819974 CACTGTGTAGCTTTTGATCAAATTTTT 58.180 29.630 21.10 10.14 0.00 1.94
407 423 9.651913 TGTAGCTTTTGATCAAATTTTTATCCC 57.348 29.630 21.10 5.10 0.00 3.85
408 424 7.832503 AGCTTTTGATCAAATTTTTATCCCG 57.167 32.000 21.10 0.00 0.00 5.14
409 425 6.313658 AGCTTTTGATCAAATTTTTATCCCGC 59.686 34.615 21.10 6.26 0.00 6.13
410 426 6.313658 GCTTTTGATCAAATTTTTATCCCGCT 59.686 34.615 21.10 0.00 0.00 5.52
411 427 7.593875 TTTTGATCAAATTTTTATCCCGCTG 57.406 32.000 21.10 0.00 0.00 5.18
412 428 4.681744 TGATCAAATTTTTATCCCGCTGC 58.318 39.130 0.00 0.00 0.00 5.25
413 429 4.159321 TGATCAAATTTTTATCCCGCTGCA 59.841 37.500 0.00 0.00 0.00 4.41
414 430 4.734398 TCAAATTTTTATCCCGCTGCAT 57.266 36.364 0.00 0.00 0.00 3.96
415 431 4.681744 TCAAATTTTTATCCCGCTGCATC 58.318 39.130 0.00 0.00 0.00 3.91
416 432 3.354089 AATTTTTATCCCGCTGCATCG 57.646 42.857 2.26 2.26 0.00 3.84
417 433 0.380378 TTTTTATCCCGCTGCATCGC 59.620 50.000 4.01 0.00 0.00 4.58
418 434 0.746204 TTTTATCCCGCTGCATCGCA 60.746 50.000 4.01 0.00 36.92 5.10
419 435 1.436195 TTTATCCCGCTGCATCGCAC 61.436 55.000 4.01 0.00 33.79 5.34
428 444 3.825611 GCATCGCACGGGCCATTT 61.826 61.111 2.82 0.00 36.38 2.32
429 445 2.884367 CATCGCACGGGCCATTTT 59.116 55.556 2.82 0.00 36.38 1.82
430 446 1.226660 CATCGCACGGGCCATTTTC 60.227 57.895 2.82 0.00 36.38 2.29
431 447 2.414785 ATCGCACGGGCCATTTTCC 61.415 57.895 2.82 0.00 36.38 3.13
432 448 2.837031 ATCGCACGGGCCATTTTCCT 62.837 55.000 2.82 0.00 36.38 3.36
433 449 1.747367 CGCACGGGCCATTTTCCTA 60.747 57.895 2.82 0.00 36.38 2.94
434 450 1.714899 CGCACGGGCCATTTTCCTAG 61.715 60.000 2.82 0.00 36.38 3.02
435 451 0.679960 GCACGGGCCATTTTCCTAGT 60.680 55.000 4.39 0.00 0.00 2.57
436 452 1.407712 GCACGGGCCATTTTCCTAGTA 60.408 52.381 4.39 0.00 0.00 1.82
437 453 2.942306 GCACGGGCCATTTTCCTAGTAA 60.942 50.000 4.39 0.00 0.00 2.24
438 454 3.349022 CACGGGCCATTTTCCTAGTAAA 58.651 45.455 4.39 0.00 0.00 2.01
439 455 3.377172 CACGGGCCATTTTCCTAGTAAAG 59.623 47.826 4.39 0.00 0.00 1.85
440 456 3.264964 ACGGGCCATTTTCCTAGTAAAGA 59.735 43.478 4.39 0.00 0.00 2.52
441 457 4.079958 ACGGGCCATTTTCCTAGTAAAGAT 60.080 41.667 4.39 0.00 0.00 2.40
442 458 5.131475 ACGGGCCATTTTCCTAGTAAAGATA 59.869 40.000 4.39 0.00 0.00 1.98
443 459 6.059484 CGGGCCATTTTCCTAGTAAAGATAA 58.941 40.000 4.39 0.00 0.00 1.75
444 460 6.544564 CGGGCCATTTTCCTAGTAAAGATAAA 59.455 38.462 4.39 0.00 0.00 1.40
445 461 7.067737 CGGGCCATTTTCCTAGTAAAGATAAAA 59.932 37.037 4.39 0.00 0.00 1.52
446 462 8.924303 GGGCCATTTTCCTAGTAAAGATAAAAT 58.076 33.333 4.39 0.00 33.99 1.82
511 529 5.187967 TCTTTTGATGAGAAGGAGGGAGTAC 59.812 44.000 0.00 0.00 0.00 2.73
516 534 2.575279 TGAGAAGGAGGGAGTACGTACT 59.425 50.000 27.71 27.71 39.71 2.73
517 535 3.776969 TGAGAAGGAGGGAGTACGTACTA 59.223 47.826 27.44 5.30 36.50 1.82
518 536 4.141756 TGAGAAGGAGGGAGTACGTACTAG 60.142 50.000 27.44 0.00 36.50 2.57
555 573 1.355971 CCGTGGAATCGGTACAAGTG 58.644 55.000 0.00 0.00 44.77 3.16
556 574 0.719465 CGTGGAATCGGTACAAGTGC 59.281 55.000 0.00 0.00 0.00 4.40
561 586 3.187700 GGAATCGGTACAAGTGCAGTAG 58.812 50.000 0.00 0.00 0.00 2.57
598 623 1.267121 AGGAGCACGGAACTGTATGT 58.733 50.000 0.00 0.00 0.00 2.29
639 667 2.352032 CCGTCCCAGACTGAGACCC 61.352 68.421 11.14 0.00 0.00 4.46
655 683 2.030562 CCAGCCGGACACGTTTCT 59.969 61.111 5.05 0.00 38.78 2.52
852 881 1.685180 GCACTCCCACCTATTTTCCCC 60.685 57.143 0.00 0.00 0.00 4.81
853 882 1.923148 CACTCCCACCTATTTTCCCCT 59.077 52.381 0.00 0.00 0.00 4.79
854 883 1.923148 ACTCCCACCTATTTTCCCCTG 59.077 52.381 0.00 0.00 0.00 4.45
917 946 0.608640 CGCAACAACCCTACTCTCCT 59.391 55.000 0.00 0.00 0.00 3.69
956 985 2.708325 GGAGTCCATAGCCTCCAGATTT 59.292 50.000 3.60 0.00 45.47 2.17
998 1027 3.854669 CTACTGGGGGAGGCAGCG 61.855 72.222 0.00 0.00 0.00 5.18
1160 1189 0.462047 GATGTCTGCAAGGTACGGGG 60.462 60.000 0.00 0.00 0.00 5.73
1172 1202 2.372074 TACGGGGCCCAGTCAATCC 61.372 63.158 32.13 5.47 0.00 3.01
1173 1203 3.727258 CGGGGCCCAGTCAATCCA 61.727 66.667 26.86 0.00 0.00 3.41
1174 1204 2.043953 GGGGCCCAGTCAATCCAC 60.044 66.667 26.86 0.00 0.00 4.02
1175 1205 2.043953 GGGCCCAGTCAATCCACC 60.044 66.667 19.95 0.00 0.00 4.61
1176 1206 2.043953 GGCCCAGTCAATCCACCC 60.044 66.667 0.00 0.00 0.00 4.61
1177 1207 2.043953 GCCCAGTCAATCCACCCC 60.044 66.667 0.00 0.00 0.00 4.95
1178 1208 2.616458 GCCCAGTCAATCCACCCCT 61.616 63.158 0.00 0.00 0.00 4.79
1196 1226 1.340502 CCTGCCTTCTTTCCCCTTCTC 60.341 57.143 0.00 0.00 0.00 2.87
1231 1261 2.808543 AGTTCTTTGTGCCGATCTGTTC 59.191 45.455 0.00 0.00 0.00 3.18
1245 1275 0.613777 CTGTTCCTACTTTCCCCGCT 59.386 55.000 0.00 0.00 0.00 5.52
1246 1276 1.003233 CTGTTCCTACTTTCCCCGCTT 59.997 52.381 0.00 0.00 0.00 4.68
1247 1277 2.235402 CTGTTCCTACTTTCCCCGCTTA 59.765 50.000 0.00 0.00 0.00 3.09
1248 1278 2.638855 TGTTCCTACTTTCCCCGCTTAA 59.361 45.455 0.00 0.00 0.00 1.85
1249 1279 3.072768 TGTTCCTACTTTCCCCGCTTAAA 59.927 43.478 0.00 0.00 0.00 1.52
1313 1343 2.342354 CGTTGCGCCATTCTCAAATTTC 59.658 45.455 4.18 0.00 0.00 2.17
1339 1369 2.058595 CGACCCCATCTTCTCCCGT 61.059 63.158 0.00 0.00 0.00 5.28
1477 1507 5.372373 CCCTTGGATTAGATTGTCTTCTCC 58.628 45.833 0.00 0.00 0.00 3.71
1521 1551 1.195900 TCGGTGTGATTTTGCGCTTAC 59.804 47.619 9.73 0.00 0.00 2.34
1556 1586 3.192922 GCGGCGGTGCTATTTCGT 61.193 61.111 9.78 0.00 0.00 3.85
1625 1655 5.472137 GCTAATTTCTGTGACCTGTGGTTAA 59.528 40.000 0.00 0.00 35.25 2.01
1672 1703 9.582648 AATCACCCTTTACTGTTAATTTGTACT 57.417 29.630 0.00 0.00 0.00 2.73
1673 1704 8.611654 TCACCCTTTACTGTTAATTTGTACTC 57.388 34.615 0.00 0.00 0.00 2.59
1674 1705 7.662669 TCACCCTTTACTGTTAATTTGTACTCC 59.337 37.037 0.00 0.00 0.00 3.85
1675 1706 6.652062 ACCCTTTACTGTTAATTTGTACTCCG 59.348 38.462 0.00 0.00 0.00 4.63
1676 1707 6.652062 CCCTTTACTGTTAATTTGTACTCCGT 59.348 38.462 0.00 0.00 0.00 4.69
1688 1719 7.742556 ATTTGTACTCCGTACTACTATCTCC 57.257 40.000 5.83 0.00 39.49 3.71
1745 1792 0.737219 CATTTACCTGCAGGCAGAGC 59.263 55.000 33.06 0.00 46.30 4.09
1753 1800 1.863454 CTGCAGGCAGAGCGTATTAAG 59.137 52.381 16.02 0.00 46.30 1.85
1794 1841 2.734755 TGACCATGATTTAGGGCAGG 57.265 50.000 0.00 0.00 38.22 4.85
2011 2058 0.249073 AATCTCGGCGTCTTCATCCG 60.249 55.000 6.85 0.00 44.16 4.18
2273 2321 5.101628 GCTAGTCTGTTTCTCATCTCTGTG 58.898 45.833 0.00 0.00 0.00 3.66
2386 2434 2.188817 GGGAGAAGAGGCTTGAGGTAA 58.811 52.381 0.00 0.00 0.00 2.85
2403 2453 9.289303 CTTGAGGTAATTTAATTATGCACACAC 57.711 33.333 0.47 0.00 0.00 3.82
2421 2471 2.034124 CACAAATGGCTTATCCCCTGG 58.966 52.381 0.00 0.00 0.00 4.45
2937 2987 7.172342 ACTCCCTACTATGATCTATCTCACAC 58.828 42.308 0.00 0.00 0.00 3.82
2968 3018 6.053650 CCTGATCTTCTCTTCATATGCAACA 58.946 40.000 0.00 0.00 0.00 3.33
3055 3105 6.012157 AGGCTGTGCTTATTATTCATATCCCT 60.012 38.462 0.00 0.00 0.00 4.20
3546 3597 2.558359 GGCCAATGTCACAGCTACTTTT 59.442 45.455 0.00 0.00 0.00 2.27
3778 3829 5.582950 AATTACTAATGAGCCTATGCCCA 57.417 39.130 0.00 0.00 38.69 5.36
3791 3843 4.751028 GCCTATGCCCATCCTACATTCTTT 60.751 45.833 0.00 0.00 0.00 2.52
4431 4483 5.509670 GGAGAAAACTGGCATAACAGCTTTT 60.510 40.000 0.00 0.00 42.21 2.27
4704 4756 2.619074 CCTTCCACCTCTCCCATTTCAC 60.619 54.545 0.00 0.00 0.00 3.18
4780 4834 1.266718 TGTTTTCGAATCTGTGCTGCC 59.733 47.619 0.00 0.00 0.00 4.85
5018 5311 5.972107 AGGTTTGACATTTCTTCCTGATG 57.028 39.130 0.00 0.00 0.00 3.07
5047 5340 1.926108 ACTCTTCAGGTTAGCGAGGT 58.074 50.000 0.00 0.00 0.00 3.85
5110 5403 1.992557 AGCCCAACAAGACCTAATCCA 59.007 47.619 0.00 0.00 0.00 3.41
5435 5734 6.909550 TGGAGTTGCAAAGGTATGTTTAAT 57.090 33.333 0.00 0.00 0.00 1.40
5488 5787 4.202245 AGGTCTTGCTCGCTACAATTAA 57.798 40.909 0.00 0.00 0.00 1.40
5497 5796 7.372451 TGCTCGCTACAATTAATTTACTGTT 57.628 32.000 0.00 0.00 0.00 3.16
5555 5854 7.124298 GCCCTTACCTTCAAGGAGATTATTTTT 59.876 37.037 11.59 0.00 46.94 1.94
5644 5943 3.436924 CCGCAGCGGGGTAAAACC 61.437 66.667 27.32 0.00 44.15 3.27
5649 5948 0.250553 CAGCGGGGTAAAACCTCACA 60.251 55.000 0.00 0.00 39.25 3.58
5672 5971 9.054922 CACATTGTTTTAATTGTTCAAGGGATT 57.945 29.630 0.00 0.00 0.00 3.01
5752 6051 7.443302 TTCATGACAGAAAATAGGAGAGGAT 57.557 36.000 0.00 0.00 0.00 3.24
5882 6181 0.534877 TGGTGGCGATGGTATGCATC 60.535 55.000 0.19 0.00 0.00 3.91
5947 6249 7.846644 TGCAAATGATTTTTCTGAAGTGTTT 57.153 28.000 0.00 0.00 0.00 2.83
5948 6250 7.686519 TGCAAATGATTTTTCTGAAGTGTTTG 58.313 30.769 0.00 0.00 0.00 2.93
5971 6273 1.985473 TTTTGTCACATCAGCAGCCT 58.015 45.000 0.00 0.00 0.00 4.58
6087 6389 3.187700 GCTACGATCGTCAAAGGTGAAT 58.812 45.455 26.48 0.00 34.87 2.57
6088 6390 4.357142 GCTACGATCGTCAAAGGTGAATA 58.643 43.478 26.48 0.91 34.87 1.75
6089 6391 4.441415 GCTACGATCGTCAAAGGTGAATAG 59.559 45.833 26.48 12.71 34.87 1.73
6090 6392 4.451629 ACGATCGTCAAAGGTGAATAGT 57.548 40.909 16.60 0.00 34.87 2.12
6091 6393 4.817517 ACGATCGTCAAAGGTGAATAGTT 58.182 39.130 16.60 0.00 34.87 2.24
6092 6394 5.235516 ACGATCGTCAAAGGTGAATAGTTT 58.764 37.500 16.60 0.00 34.87 2.66
6093 6395 5.699458 ACGATCGTCAAAGGTGAATAGTTTT 59.301 36.000 16.60 0.00 34.87 2.43
6094 6396 6.015504 CGATCGTCAAAGGTGAATAGTTTTG 58.984 40.000 7.03 0.00 34.87 2.44
6095 6397 6.347402 CGATCGTCAAAGGTGAATAGTTTTGT 60.347 38.462 7.03 0.00 34.87 2.83
6096 6398 6.055231 TCGTCAAAGGTGAATAGTTTTGTG 57.945 37.500 0.00 0.00 34.87 3.33
6135 6438 2.343484 AGCATCATCCTGGTCATGTG 57.657 50.000 0.00 0.00 0.00 3.21
6192 6499 8.804743 CAATGTTGCTGACTGATAAAATTGATC 58.195 33.333 0.00 0.00 0.00 2.92
6329 6636 4.825634 GCCTAAACAGGTAAAAACCAGAGT 59.174 41.667 0.00 0.00 0.00 3.24
6408 6715 1.877443 TGCAGCGGGAAGAAAGTTAAC 59.123 47.619 0.00 0.00 0.00 2.01
6475 6782 3.573772 CTGAGCGACCAGAACGGCA 62.574 63.158 0.00 0.00 39.03 5.69
6608 6917 2.789409 AATCTGTTAGGTGTGAGCCC 57.211 50.000 0.00 0.00 0.00 5.19
6623 6932 2.688446 TGAGCCCGATCTAGTAGTGTTG 59.312 50.000 0.00 0.00 0.00 3.33
6642 6954 7.907389 AGTGTTGGATGTTTTAGTCTCTGATA 58.093 34.615 0.00 0.00 0.00 2.15
6767 7079 2.095263 CCGCGTGGATTCTGATTTTTGT 60.095 45.455 10.20 0.00 37.49 2.83
6768 7080 3.564511 CGCGTGGATTCTGATTTTTGTT 58.435 40.909 0.00 0.00 0.00 2.83
6769 7081 3.603770 CGCGTGGATTCTGATTTTTGTTC 59.396 43.478 0.00 0.00 0.00 3.18
6770 7082 4.545610 GCGTGGATTCTGATTTTTGTTCA 58.454 39.130 0.00 0.00 0.00 3.18
6771 7083 5.163513 GCGTGGATTCTGATTTTTGTTCAT 58.836 37.500 0.00 0.00 0.00 2.57
6772 7084 5.287035 GCGTGGATTCTGATTTTTGTTCATC 59.713 40.000 0.00 0.00 0.00 2.92
7004 7316 2.250939 CGGTTGCCTTGAACGAGCA 61.251 57.895 0.00 0.00 33.97 4.26
7019 7331 1.006102 AGCAACTCCGACTTCACCG 60.006 57.895 0.00 0.00 0.00 4.94
7034 7346 1.968493 TCACCGTAGAGCTTCAACCTT 59.032 47.619 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.113124 CCGTTATTCGTTATCTATCTCACACAC 59.887 40.741 0.00 0.00 37.94 3.82
3 4 6.087820 GCCGTTATTCGTTATCTATCTCACAC 59.912 42.308 0.00 0.00 37.94 3.82
5 6 6.380190 AGCCGTTATTCGTTATCTATCTCAC 58.620 40.000 0.00 0.00 37.94 3.51
9 10 6.248001 CGTGTAGCCGTTATTCGTTATCTATC 59.752 42.308 0.00 0.00 37.94 2.08
10 11 6.082338 CGTGTAGCCGTTATTCGTTATCTAT 58.918 40.000 0.00 0.00 37.94 1.98
11 12 5.443261 CGTGTAGCCGTTATTCGTTATCTA 58.557 41.667 0.00 0.00 37.94 1.98
12 13 4.285292 CGTGTAGCCGTTATTCGTTATCT 58.715 43.478 0.00 0.00 37.94 1.98
13 14 3.121563 GCGTGTAGCCGTTATTCGTTATC 60.122 47.826 0.00 0.00 40.81 1.75
14 15 2.791004 GCGTGTAGCCGTTATTCGTTAT 59.209 45.455 0.00 0.00 40.81 1.89
15 16 2.184448 GCGTGTAGCCGTTATTCGTTA 58.816 47.619 0.00 0.00 40.81 3.18
16 17 0.994263 GCGTGTAGCCGTTATTCGTT 59.006 50.000 0.00 0.00 40.81 3.85
17 18 2.657336 GCGTGTAGCCGTTATTCGT 58.343 52.632 0.00 0.00 40.81 3.85
28 29 4.219143 TGTCTAATCGGTATGCGTGTAG 57.781 45.455 0.00 0.00 0.00 2.74
29 30 4.635833 TTGTCTAATCGGTATGCGTGTA 57.364 40.909 0.00 0.00 0.00 2.90
30 31 3.513680 TTGTCTAATCGGTATGCGTGT 57.486 42.857 0.00 0.00 0.00 4.49
31 32 4.270084 ACATTTGTCTAATCGGTATGCGTG 59.730 41.667 0.00 0.00 0.00 5.34
32 33 4.439057 ACATTTGTCTAATCGGTATGCGT 58.561 39.130 0.00 0.00 0.00 5.24
33 34 5.006261 TCAACATTTGTCTAATCGGTATGCG 59.994 40.000 0.00 0.00 0.00 4.73
34 35 6.192360 GTCAACATTTGTCTAATCGGTATGC 58.808 40.000 0.00 0.00 0.00 3.14
35 36 6.538742 AGGTCAACATTTGTCTAATCGGTATG 59.461 38.462 0.00 0.00 0.00 2.39
36 37 6.650120 AGGTCAACATTTGTCTAATCGGTAT 58.350 36.000 0.00 0.00 0.00 2.73
37 38 6.045072 AGGTCAACATTTGTCTAATCGGTA 57.955 37.500 0.00 0.00 0.00 4.02
38 39 4.906618 AGGTCAACATTTGTCTAATCGGT 58.093 39.130 0.00 0.00 0.00 4.69
39 40 5.181245 ACAAGGTCAACATTTGTCTAATCGG 59.819 40.000 0.00 0.00 29.55 4.18
40 41 6.241207 ACAAGGTCAACATTTGTCTAATCG 57.759 37.500 0.00 0.00 29.55 3.34
41 42 8.871686 AAAACAAGGTCAACATTTGTCTAATC 57.128 30.769 3.69 0.00 34.18 1.75
42 43 9.313118 GAAAAACAAGGTCAACATTTGTCTAAT 57.687 29.630 3.69 0.00 34.18 1.73
43 44 8.527810 AGAAAAACAAGGTCAACATTTGTCTAA 58.472 29.630 3.69 0.00 34.18 2.10
104 106 7.459125 ACACCACCATAATATCTCTATGACCAT 59.541 37.037 0.00 0.00 0.00 3.55
107 109 7.896811 TGACACCACCATAATATCTCTATGAC 58.103 38.462 0.00 0.00 0.00 3.06
163 179 0.105964 TCCATTCCAAGGGCGATACG 59.894 55.000 0.00 0.00 0.00 3.06
167 183 1.140852 CTATGTCCATTCCAAGGGCGA 59.859 52.381 0.00 0.00 31.97 5.54
170 186 3.203040 AGGTTCTATGTCCATTCCAAGGG 59.797 47.826 0.00 0.00 0.00 3.95
187 203 3.067833 GTTCTAGGTTCTGCACAGGTTC 58.932 50.000 0.00 0.00 0.00 3.62
188 204 2.224548 GGTTCTAGGTTCTGCACAGGTT 60.225 50.000 0.00 0.00 0.00 3.50
189 205 1.348036 GGTTCTAGGTTCTGCACAGGT 59.652 52.381 0.00 0.00 0.00 4.00
190 206 1.347707 TGGTTCTAGGTTCTGCACAGG 59.652 52.381 0.00 0.00 0.00 4.00
191 207 2.839486 TGGTTCTAGGTTCTGCACAG 57.161 50.000 0.00 0.00 0.00 3.66
192 208 2.703536 TCTTGGTTCTAGGTTCTGCACA 59.296 45.455 0.00 0.00 0.00 4.57
193 209 3.402628 TCTTGGTTCTAGGTTCTGCAC 57.597 47.619 0.00 0.00 0.00 4.57
194 210 3.327757 ACATCTTGGTTCTAGGTTCTGCA 59.672 43.478 0.00 0.00 0.00 4.41
195 211 3.944087 ACATCTTGGTTCTAGGTTCTGC 58.056 45.455 0.00 0.00 0.00 4.26
196 212 5.551233 TCAACATCTTGGTTCTAGGTTCTG 58.449 41.667 0.00 0.00 0.00 3.02
197 213 5.825593 TCAACATCTTGGTTCTAGGTTCT 57.174 39.130 0.00 0.00 0.00 3.01
198 214 5.355350 CCATCAACATCTTGGTTCTAGGTTC 59.645 44.000 0.00 0.00 0.00 3.62
199 215 5.014123 TCCATCAACATCTTGGTTCTAGGTT 59.986 40.000 0.00 0.00 0.00 3.50
200 216 4.536090 TCCATCAACATCTTGGTTCTAGGT 59.464 41.667 0.00 0.00 0.00 3.08
201 217 4.878397 GTCCATCAACATCTTGGTTCTAGG 59.122 45.833 0.00 0.00 0.00 3.02
202 218 5.491070 TGTCCATCAACATCTTGGTTCTAG 58.509 41.667 0.00 0.00 0.00 2.43
203 219 5.497464 TGTCCATCAACATCTTGGTTCTA 57.503 39.130 0.00 0.00 0.00 2.10
204 220 4.371624 TGTCCATCAACATCTTGGTTCT 57.628 40.909 0.00 0.00 0.00 3.01
205 221 4.082571 CCTTGTCCATCAACATCTTGGTTC 60.083 45.833 0.00 0.00 32.18 3.62
206 222 3.828451 CCTTGTCCATCAACATCTTGGTT 59.172 43.478 0.00 0.00 32.18 3.67
207 223 3.424703 CCTTGTCCATCAACATCTTGGT 58.575 45.455 0.00 0.00 32.18 3.67
208 224 2.756760 CCCTTGTCCATCAACATCTTGG 59.243 50.000 0.00 0.00 32.18 3.61
209 225 3.441572 GTCCCTTGTCCATCAACATCTTG 59.558 47.826 0.00 0.00 32.18 3.02
210 226 3.331889 AGTCCCTTGTCCATCAACATCTT 59.668 43.478 0.00 0.00 32.18 2.40
211 227 2.915604 AGTCCCTTGTCCATCAACATCT 59.084 45.455 0.00 0.00 32.18 2.90
212 228 3.054802 AGAGTCCCTTGTCCATCAACATC 60.055 47.826 0.00 0.00 32.18 3.06
213 229 2.915604 AGAGTCCCTTGTCCATCAACAT 59.084 45.455 0.00 0.00 32.18 2.71
214 230 2.303022 GAGAGTCCCTTGTCCATCAACA 59.697 50.000 0.00 0.00 32.18 3.33
215 231 2.675317 CGAGAGTCCCTTGTCCATCAAC 60.675 54.545 0.00 0.00 32.18 3.18
216 232 1.550524 CGAGAGTCCCTTGTCCATCAA 59.449 52.381 0.00 0.00 34.61 2.57
217 233 1.186200 CGAGAGTCCCTTGTCCATCA 58.814 55.000 0.00 0.00 0.00 3.07
218 234 0.179097 GCGAGAGTCCCTTGTCCATC 60.179 60.000 0.00 0.00 0.00 3.51
219 235 0.616111 AGCGAGAGTCCCTTGTCCAT 60.616 55.000 0.00 0.00 0.00 3.41
220 236 0.039180 TAGCGAGAGTCCCTTGTCCA 59.961 55.000 0.00 0.00 0.00 4.02
221 237 1.183549 TTAGCGAGAGTCCCTTGTCC 58.816 55.000 0.00 0.00 0.00 4.02
222 238 3.528597 ATTTAGCGAGAGTCCCTTGTC 57.471 47.619 0.00 0.00 0.00 3.18
223 239 3.983044 AATTTAGCGAGAGTCCCTTGT 57.017 42.857 0.00 0.00 0.00 3.16
224 240 6.737254 TTTAAATTTAGCGAGAGTCCCTTG 57.263 37.500 0.00 0.00 0.00 3.61
225 241 8.044908 TGTATTTAAATTTAGCGAGAGTCCCTT 58.955 33.333 5.91 0.00 0.00 3.95
226 242 7.494952 GTGTATTTAAATTTAGCGAGAGTCCCT 59.505 37.037 5.91 0.00 0.00 4.20
227 243 7.279313 TGTGTATTTAAATTTAGCGAGAGTCCC 59.721 37.037 5.91 0.00 0.00 4.46
228 244 8.193250 TGTGTATTTAAATTTAGCGAGAGTCC 57.807 34.615 5.91 0.00 0.00 3.85
229 245 9.851043 GATGTGTATTTAAATTTAGCGAGAGTC 57.149 33.333 5.91 0.00 0.00 3.36
230 246 9.378551 TGATGTGTATTTAAATTTAGCGAGAGT 57.621 29.630 5.91 0.00 0.00 3.24
247 263 8.338259 GCAACGATAGAAAGAATTGATGTGTAT 58.662 33.333 0.00 0.00 41.38 2.29
248 264 7.333174 TGCAACGATAGAAAGAATTGATGTGTA 59.667 33.333 0.00 0.00 41.38 2.90
249 265 6.149308 TGCAACGATAGAAAGAATTGATGTGT 59.851 34.615 0.00 0.00 41.38 3.72
250 266 6.545508 TGCAACGATAGAAAGAATTGATGTG 58.454 36.000 0.00 0.00 41.38 3.21
251 267 6.741992 TGCAACGATAGAAAGAATTGATGT 57.258 33.333 0.00 0.00 41.38 3.06
252 268 6.470235 GGTTGCAACGATAGAAAGAATTGATG 59.530 38.462 22.67 0.00 41.38 3.07
253 269 6.150976 TGGTTGCAACGATAGAAAGAATTGAT 59.849 34.615 22.67 0.00 41.38 2.57
254 270 5.471797 TGGTTGCAACGATAGAAAGAATTGA 59.528 36.000 22.67 0.00 41.38 2.57
255 271 5.698832 TGGTTGCAACGATAGAAAGAATTG 58.301 37.500 22.67 0.00 41.38 2.32
256 272 5.957842 TGGTTGCAACGATAGAAAGAATT 57.042 34.783 22.67 0.00 41.38 2.17
257 273 5.163622 CCATGGTTGCAACGATAGAAAGAAT 60.164 40.000 24.20 0.00 41.38 2.40
258 274 4.155826 CCATGGTTGCAACGATAGAAAGAA 59.844 41.667 24.20 1.19 41.38 2.52
259 275 3.689161 CCATGGTTGCAACGATAGAAAGA 59.311 43.478 24.20 0.99 41.38 2.52
260 276 3.181497 CCCATGGTTGCAACGATAGAAAG 60.181 47.826 24.20 12.92 41.38 2.62
261 277 2.752354 CCCATGGTTGCAACGATAGAAA 59.248 45.455 24.20 4.86 41.38 2.52
262 278 2.364632 CCCATGGTTGCAACGATAGAA 58.635 47.619 24.20 6.49 41.38 2.10
263 279 2.016604 GCCCATGGTTGCAACGATAGA 61.017 52.381 24.20 6.56 41.38 1.98
264 280 0.381801 GCCCATGGTTGCAACGATAG 59.618 55.000 24.20 17.92 46.19 2.08
265 281 0.322906 TGCCCATGGTTGCAACGATA 60.323 50.000 24.20 13.45 33.87 2.92
266 282 1.606025 TGCCCATGGTTGCAACGAT 60.606 52.632 22.67 21.30 33.87 3.73
267 283 2.203408 TGCCCATGGTTGCAACGA 60.203 55.556 22.67 19.90 33.87 3.85
268 284 2.049248 GTGCCCATGGTTGCAACG 60.049 61.111 22.67 10.04 39.57 4.10
269 285 0.897863 TAGGTGCCCATGGTTGCAAC 60.898 55.000 21.59 21.59 45.52 4.17
270 286 0.611618 CTAGGTGCCCATGGTTGCAA 60.612 55.000 16.17 0.00 39.57 4.08
271 287 1.001020 CTAGGTGCCCATGGTTGCA 60.001 57.895 11.73 11.45 34.54 4.08
272 288 2.418083 GCTAGGTGCCCATGGTTGC 61.418 63.158 11.73 8.61 35.15 4.17
273 289 0.546122 TAGCTAGGTGCCCATGGTTG 59.454 55.000 11.73 0.00 44.23 3.77
274 290 1.522900 ATAGCTAGGTGCCCATGGTT 58.477 50.000 11.73 0.00 44.23 3.67
275 291 1.522900 AATAGCTAGGTGCCCATGGT 58.477 50.000 11.73 0.00 44.23 3.55
276 292 2.233271 CAAATAGCTAGGTGCCCATGG 58.767 52.381 4.14 4.14 44.23 3.66
277 293 1.610522 GCAAATAGCTAGGTGCCCATG 59.389 52.381 16.90 0.00 44.23 3.66
278 294 1.986882 GCAAATAGCTAGGTGCCCAT 58.013 50.000 16.90 0.00 44.23 4.00
279 295 3.494850 GCAAATAGCTAGGTGCCCA 57.505 52.632 16.90 0.00 44.23 5.36
289 305 6.620678 TCAAAAGACAATGGTAGCAAATAGC 58.379 36.000 0.00 0.00 46.19 2.97
290 306 8.461222 TGATCAAAAGACAATGGTAGCAAATAG 58.539 33.333 0.00 0.00 0.00 1.73
291 307 8.347004 TGATCAAAAGACAATGGTAGCAAATA 57.653 30.769 0.00 0.00 0.00 1.40
292 308 7.230849 TGATCAAAAGACAATGGTAGCAAAT 57.769 32.000 0.00 0.00 0.00 2.32
293 309 6.647334 TGATCAAAAGACAATGGTAGCAAA 57.353 33.333 0.00 0.00 0.00 3.68
294 310 6.647334 TTGATCAAAAGACAATGGTAGCAA 57.353 33.333 5.45 0.00 0.00 3.91
295 311 6.839124 ATTGATCAAAAGACAATGGTAGCA 57.161 33.333 13.09 0.00 33.79 3.49
296 312 7.542025 AGAATTGATCAAAAGACAATGGTAGC 58.458 34.615 13.09 0.00 35.00 3.58
297 313 8.954350 AGAGAATTGATCAAAAGACAATGGTAG 58.046 33.333 13.09 0.00 35.00 3.18
298 314 8.868522 AGAGAATTGATCAAAAGACAATGGTA 57.131 30.769 13.09 0.00 35.00 3.25
299 315 7.449395 TGAGAGAATTGATCAAAAGACAATGGT 59.551 33.333 13.09 0.00 35.00 3.55
300 316 7.823665 TGAGAGAATTGATCAAAAGACAATGG 58.176 34.615 13.09 0.00 35.00 3.16
301 317 9.687210 TTTGAGAGAATTGATCAAAAGACAATG 57.313 29.630 13.09 0.00 39.34 2.82
310 326 9.823647 GAGGTAGTATTTGAGAGAATTGATCAA 57.176 33.333 11.26 11.26 0.00 2.57
311 327 8.424918 GGAGGTAGTATTTGAGAGAATTGATCA 58.575 37.037 0.00 0.00 0.00 2.92
312 328 7.596995 CGGAGGTAGTATTTGAGAGAATTGATC 59.403 40.741 0.00 0.00 0.00 2.92
313 329 7.070074 ACGGAGGTAGTATTTGAGAGAATTGAT 59.930 37.037 0.00 0.00 0.00 2.57
314 330 6.380274 ACGGAGGTAGTATTTGAGAGAATTGA 59.620 38.462 0.00 0.00 0.00 2.57
315 331 6.574350 ACGGAGGTAGTATTTGAGAGAATTG 58.426 40.000 0.00 0.00 0.00 2.32
316 332 6.183360 GGACGGAGGTAGTATTTGAGAGAATT 60.183 42.308 0.00 0.00 0.00 2.17
317 333 5.302313 GGACGGAGGTAGTATTTGAGAGAAT 59.698 44.000 0.00 0.00 0.00 2.40
318 334 4.643784 GGACGGAGGTAGTATTTGAGAGAA 59.356 45.833 0.00 0.00 0.00 2.87
319 335 4.205587 GGACGGAGGTAGTATTTGAGAGA 58.794 47.826 0.00 0.00 0.00 3.10
320 336 3.003482 CGGACGGAGGTAGTATTTGAGAG 59.997 52.174 0.00 0.00 0.00 3.20
321 337 2.947652 CGGACGGAGGTAGTATTTGAGA 59.052 50.000 0.00 0.00 0.00 3.27
322 338 2.034305 CCGGACGGAGGTAGTATTTGAG 59.966 54.545 4.40 0.00 37.50 3.02
323 339 2.026641 CCGGACGGAGGTAGTATTTGA 58.973 52.381 4.40 0.00 37.50 2.69
324 340 1.068127 CCCGGACGGAGGTAGTATTTG 59.932 57.143 13.13 0.00 37.50 2.32
325 341 1.063717 TCCCGGACGGAGGTAGTATTT 60.064 52.381 13.13 0.00 34.86 1.40
326 342 0.552848 TCCCGGACGGAGGTAGTATT 59.447 55.000 13.13 0.00 34.86 1.89
327 343 0.776176 ATCCCGGACGGAGGTAGTAT 59.224 55.000 13.13 0.00 46.60 2.12
328 344 0.552848 AATCCCGGACGGAGGTAGTA 59.447 55.000 13.13 0.00 46.60 1.82
329 345 0.552848 TAATCCCGGACGGAGGTAGT 59.447 55.000 13.13 0.00 46.60 2.73
330 346 1.696063 TTAATCCCGGACGGAGGTAG 58.304 55.000 13.13 0.00 46.60 3.18
331 347 2.157640 TTTAATCCCGGACGGAGGTA 57.842 50.000 13.13 0.00 46.60 3.08
332 348 1.278537 TTTTAATCCCGGACGGAGGT 58.721 50.000 13.13 0.00 46.60 3.85
333 349 2.285977 CTTTTTAATCCCGGACGGAGG 58.714 52.381 13.13 0.00 46.60 4.30
334 350 1.669265 GCTTTTTAATCCCGGACGGAG 59.331 52.381 13.13 2.58 46.60 4.63
336 352 0.736636 GGCTTTTTAATCCCGGACGG 59.263 55.000 0.73 3.25 0.00 4.79
337 353 0.736636 GGGCTTTTTAATCCCGGACG 59.263 55.000 0.73 0.00 0.00 4.79
338 354 2.139323 AGGGCTTTTTAATCCCGGAC 57.861 50.000 0.73 0.00 44.70 4.79
339 355 2.041891 TCAAGGGCTTTTTAATCCCGGA 59.958 45.455 0.73 0.00 44.70 5.14
340 356 2.427095 CTCAAGGGCTTTTTAATCCCGG 59.573 50.000 0.00 0.00 44.70 5.73
341 357 2.159240 GCTCAAGGGCTTTTTAATCCCG 60.159 50.000 0.00 0.00 44.70 5.14
342 358 2.168521 GGCTCAAGGGCTTTTTAATCCC 59.831 50.000 0.00 0.00 40.36 3.85
343 359 2.831526 TGGCTCAAGGGCTTTTTAATCC 59.168 45.455 0.00 0.00 41.48 3.01
344 360 4.160252 TCATGGCTCAAGGGCTTTTTAATC 59.840 41.667 0.00 0.00 41.48 1.75
345 361 4.095946 TCATGGCTCAAGGGCTTTTTAAT 58.904 39.130 0.00 0.00 41.48 1.40
346 362 3.505386 TCATGGCTCAAGGGCTTTTTAA 58.495 40.909 0.00 0.00 41.48 1.52
347 363 3.168035 TCATGGCTCAAGGGCTTTTTA 57.832 42.857 0.00 0.00 41.48 1.52
348 364 2.014010 TCATGGCTCAAGGGCTTTTT 57.986 45.000 0.00 0.00 41.48 1.94
349 365 2.014010 TTCATGGCTCAAGGGCTTTT 57.986 45.000 0.00 0.00 41.48 2.27
350 366 1.620323 GTTTCATGGCTCAAGGGCTTT 59.380 47.619 0.00 0.00 41.48 3.51
351 367 1.260544 GTTTCATGGCTCAAGGGCTT 58.739 50.000 0.00 0.00 41.48 4.35
352 368 0.613012 GGTTTCATGGCTCAAGGGCT 60.613 55.000 0.00 0.00 41.48 5.19
353 369 0.899717 TGGTTTCATGGCTCAAGGGC 60.900 55.000 0.00 0.00 41.27 5.19
354 370 1.547372 CTTGGTTTCATGGCTCAAGGG 59.453 52.381 0.00 0.00 33.32 3.95
355 371 2.229784 GTCTTGGTTTCATGGCTCAAGG 59.770 50.000 14.28 2.97 36.45 3.61
356 372 2.886523 TGTCTTGGTTTCATGGCTCAAG 59.113 45.455 0.00 3.10 36.95 3.02
357 373 2.622942 GTGTCTTGGTTTCATGGCTCAA 59.377 45.455 0.00 0.00 0.00 3.02
358 374 2.158623 AGTGTCTTGGTTTCATGGCTCA 60.159 45.455 0.00 0.00 0.00 4.26
359 375 2.227388 CAGTGTCTTGGTTTCATGGCTC 59.773 50.000 0.00 0.00 0.00 4.70
360 376 2.233271 CAGTGTCTTGGTTTCATGGCT 58.767 47.619 0.00 0.00 0.00 4.75
361 377 1.956477 ACAGTGTCTTGGTTTCATGGC 59.044 47.619 0.00 0.00 0.00 4.40
362 378 2.951642 ACACAGTGTCTTGGTTTCATGG 59.048 45.455 0.00 0.00 0.00 3.66
363 379 4.319766 GCTACACAGTGTCTTGGTTTCATG 60.320 45.833 10.23 0.00 0.00 3.07
364 380 3.815401 GCTACACAGTGTCTTGGTTTCAT 59.185 43.478 10.23 0.00 0.00 2.57
365 381 3.118408 AGCTACACAGTGTCTTGGTTTCA 60.118 43.478 10.23 0.00 0.00 2.69
366 382 3.467803 AGCTACACAGTGTCTTGGTTTC 58.532 45.455 10.23 0.00 0.00 2.78
367 383 3.560636 AGCTACACAGTGTCTTGGTTT 57.439 42.857 10.23 0.00 0.00 3.27
368 384 3.560636 AAGCTACACAGTGTCTTGGTT 57.439 42.857 10.23 10.64 0.00 3.67
369 385 3.560636 AAAGCTACACAGTGTCTTGGT 57.439 42.857 10.23 4.87 0.00 3.67
370 386 3.876914 TCAAAAGCTACACAGTGTCTTGG 59.123 43.478 10.23 5.31 0.00 3.61
371 387 5.237127 TGATCAAAAGCTACACAGTGTCTTG 59.763 40.000 10.23 7.60 0.00 3.02
372 388 5.368145 TGATCAAAAGCTACACAGTGTCTT 58.632 37.500 10.23 5.61 0.00 3.01
373 389 4.960938 TGATCAAAAGCTACACAGTGTCT 58.039 39.130 10.23 0.00 0.00 3.41
374 390 5.673337 TTGATCAAAAGCTACACAGTGTC 57.327 39.130 10.23 0.00 0.00 3.67
375 391 6.639632 ATTTGATCAAAAGCTACACAGTGT 57.360 33.333 23.91 11.87 33.56 3.55
376 392 7.935338 AAATTTGATCAAAAGCTACACAGTG 57.065 32.000 23.91 0.00 33.56 3.66
377 393 8.947055 AAAAATTTGATCAAAAGCTACACAGT 57.053 26.923 23.91 1.51 33.56 3.55
381 397 9.651913 GGGATAAAAATTTGATCAAAAGCTACA 57.348 29.630 23.91 9.11 33.56 2.74
382 398 8.807581 CGGGATAAAAATTTGATCAAAAGCTAC 58.192 33.333 23.91 12.09 33.56 3.58
383 399 7.491048 GCGGGATAAAAATTTGATCAAAAGCTA 59.509 33.333 23.91 13.25 33.56 3.32
384 400 6.313658 GCGGGATAAAAATTTGATCAAAAGCT 59.686 34.615 23.91 9.57 33.56 3.74
385 401 6.313658 AGCGGGATAAAAATTTGATCAAAAGC 59.686 34.615 23.91 10.35 33.56 3.51
386 402 7.674705 GCAGCGGGATAAAAATTTGATCAAAAG 60.675 37.037 23.91 7.35 33.56 2.27
387 403 6.091986 GCAGCGGGATAAAAATTTGATCAAAA 59.908 34.615 23.91 8.39 33.56 2.44
388 404 5.580297 GCAGCGGGATAAAAATTTGATCAAA 59.420 36.000 22.52 22.52 34.46 2.69
389 405 5.108517 GCAGCGGGATAAAAATTTGATCAA 58.891 37.500 3.38 3.38 0.00 2.57
390 406 4.159321 TGCAGCGGGATAAAAATTTGATCA 59.841 37.500 5.50 0.00 0.00 2.92
391 407 4.681744 TGCAGCGGGATAAAAATTTGATC 58.318 39.130 0.00 0.00 0.00 2.92
392 408 4.734398 TGCAGCGGGATAAAAATTTGAT 57.266 36.364 0.00 0.00 0.00 2.57
393 409 4.681744 GATGCAGCGGGATAAAAATTTGA 58.318 39.130 0.00 0.00 0.00 2.69
394 410 3.486841 CGATGCAGCGGGATAAAAATTTG 59.513 43.478 18.26 0.00 0.00 2.32
395 411 3.705604 CGATGCAGCGGGATAAAAATTT 58.294 40.909 18.26 0.00 0.00 1.82
396 412 2.543653 GCGATGCAGCGGGATAAAAATT 60.544 45.455 27.22 0.00 0.00 1.82
397 413 1.001378 GCGATGCAGCGGGATAAAAAT 60.001 47.619 27.22 0.00 0.00 1.82
398 414 0.380378 GCGATGCAGCGGGATAAAAA 59.620 50.000 27.22 0.00 0.00 1.94
399 415 0.746204 TGCGATGCAGCGGGATAAAA 60.746 50.000 27.22 0.00 40.67 1.52
400 416 1.153269 TGCGATGCAGCGGGATAAA 60.153 52.632 27.22 0.00 40.67 1.40
401 417 1.887242 GTGCGATGCAGCGGGATAA 60.887 57.895 27.22 0.00 40.08 1.75
402 418 2.280119 GTGCGATGCAGCGGGATA 60.280 61.111 27.22 0.00 40.08 2.59
411 427 3.355203 AAAATGGCCCGTGCGATGC 62.355 57.895 0.00 0.00 35.94 3.91
412 428 1.226660 GAAAATGGCCCGTGCGATG 60.227 57.895 0.00 0.00 35.94 3.84
413 429 2.414785 GGAAAATGGCCCGTGCGAT 61.415 57.895 0.00 0.00 37.55 4.58
414 430 2.186602 TAGGAAAATGGCCCGTGCGA 62.187 55.000 0.00 0.00 38.85 5.10
415 431 1.714899 CTAGGAAAATGGCCCGTGCG 61.715 60.000 0.00 0.00 38.85 5.34
416 432 0.679960 ACTAGGAAAATGGCCCGTGC 60.680 55.000 0.00 0.00 0.00 5.34
417 433 2.702592 TACTAGGAAAATGGCCCGTG 57.297 50.000 0.00 0.00 0.00 4.94
418 434 3.264964 TCTTTACTAGGAAAATGGCCCGT 59.735 43.478 0.00 0.00 0.00 5.28
419 435 3.881220 TCTTTACTAGGAAAATGGCCCG 58.119 45.455 0.00 0.00 0.00 6.13
420 436 7.891498 TTTATCTTTACTAGGAAAATGGCCC 57.109 36.000 0.00 0.00 0.00 5.80
485 501 5.966935 ACTCCCTCCTTCTCATCAAAAGATA 59.033 40.000 0.00 0.00 0.00 1.98
486 502 4.787534 ACTCCCTCCTTCTCATCAAAAGAT 59.212 41.667 0.00 0.00 0.00 2.40
488 504 4.566426 ACTCCCTCCTTCTCATCAAAAG 57.434 45.455 0.00 0.00 0.00 2.27
501 519 4.681074 ACTACTAGTACGTACTCCCTCC 57.319 50.000 30.53 0.00 37.73 4.30
511 529 5.572211 TGCCGTTGAATTACTACTAGTACG 58.428 41.667 0.00 0.17 28.93 3.67
516 534 4.613944 CGGATGCCGTTGAATTACTACTA 58.386 43.478 0.00 0.00 42.73 1.82
517 535 3.454375 CGGATGCCGTTGAATTACTACT 58.546 45.455 0.00 0.00 42.73 2.57
518 536 3.854286 CGGATGCCGTTGAATTACTAC 57.146 47.619 0.00 0.00 42.73 2.73
555 573 1.301677 GGTTCAGTGCTGCCTACTGC 61.302 60.000 13.55 3.17 43.97 4.40
556 574 0.674895 GGGTTCAGTGCTGCCTACTG 60.675 60.000 12.48 12.48 45.30 2.74
561 586 3.842925 TTCGGGGTTCAGTGCTGCC 62.843 63.158 0.00 0.00 0.00 4.85
598 623 0.875908 GAGGCTTGCGATGCACGATA 60.876 55.000 11.94 0.00 45.77 2.92
639 667 2.954753 GCAGAAACGTGTCCGGCTG 61.955 63.158 11.63 0.00 38.78 4.85
844 873 2.039462 GGCAGGGCAGGGGAAAAT 59.961 61.111 0.00 0.00 0.00 1.82
979 1008 2.368594 CTGCCTCCCCCAGTAGGA 59.631 66.667 0.00 0.00 38.24 2.94
998 1027 1.589196 GCGTCTGCTCCGTCCATAC 60.589 63.158 0.00 0.00 38.39 2.39
1160 1189 2.043953 GGGGTGGATTGACTGGGC 60.044 66.667 0.00 0.00 0.00 5.36
1172 1202 1.304464 GGGAAAGAAGGCAGGGGTG 60.304 63.158 0.00 0.00 0.00 4.61
1173 1203 2.548547 GGGGAAAGAAGGCAGGGGT 61.549 63.158 0.00 0.00 0.00 4.95
1174 1204 1.804530 AAGGGGAAAGAAGGCAGGGG 61.805 60.000 0.00 0.00 0.00 4.79
1175 1205 0.323816 GAAGGGGAAAGAAGGCAGGG 60.324 60.000 0.00 0.00 0.00 4.45
1176 1206 0.701147 AGAAGGGGAAAGAAGGCAGG 59.299 55.000 0.00 0.00 0.00 4.85
1177 1207 1.677217 CGAGAAGGGGAAAGAAGGCAG 60.677 57.143 0.00 0.00 0.00 4.85
1178 1208 0.324943 CGAGAAGGGGAAAGAAGGCA 59.675 55.000 0.00 0.00 0.00 4.75
1196 1226 1.003718 GAACTGAACCCCTGGTCCG 60.004 63.158 0.00 0.00 33.12 4.79
1231 1261 5.677567 TCTAATTTAAGCGGGGAAAGTAGG 58.322 41.667 8.94 0.00 35.17 3.18
1245 1275 9.667107 AATCTTGACGGAGACAATCTAATTTAA 57.333 29.630 0.00 0.00 41.71 1.52
1246 1276 9.314321 GAATCTTGACGGAGACAATCTAATTTA 57.686 33.333 0.00 0.00 41.71 1.40
1247 1277 7.824289 TGAATCTTGACGGAGACAATCTAATTT 59.176 33.333 0.00 0.00 41.71 1.82
1248 1278 7.331026 TGAATCTTGACGGAGACAATCTAATT 58.669 34.615 0.00 0.00 41.71 1.40
1249 1279 6.878317 TGAATCTTGACGGAGACAATCTAAT 58.122 36.000 0.00 0.00 41.71 1.73
1339 1369 5.624509 CGGGAATCGAATCCAGCATATAGAA 60.625 44.000 20.91 0.00 41.55 2.10
1413 1443 2.697263 ATCTGGAGCATGGGGGCA 60.697 61.111 0.00 0.00 35.83 5.36
1521 1551 0.453390 GCCAGAGGATTTGAAAGCGG 59.547 55.000 0.00 0.00 0.00 5.52
1556 1586 2.936919 AGATGCCGCCAAGATAATCA 57.063 45.000 0.00 0.00 0.00 2.57
1647 1678 9.227777 GAGTACAAATTAACAGTAAAGGGTGAT 57.772 33.333 0.00 0.00 0.00 3.06
1671 1702 5.927689 CAGTACAGGAGATAGTAGTACGGAG 59.072 48.000 0.00 0.00 39.84 4.63
1672 1703 5.221601 CCAGTACAGGAGATAGTAGTACGGA 60.222 48.000 0.00 0.00 39.84 4.69
1673 1704 4.996122 CCAGTACAGGAGATAGTAGTACGG 59.004 50.000 0.00 0.00 39.84 4.02
1674 1705 5.851720 TCCAGTACAGGAGATAGTAGTACG 58.148 45.833 2.26 0.00 39.84 3.67
1675 1706 7.281841 AGTTCCAGTACAGGAGATAGTAGTAC 58.718 42.308 7.12 0.01 39.25 2.73
1676 1707 7.448915 AGTTCCAGTACAGGAGATAGTAGTA 57.551 40.000 7.12 0.00 39.25 1.82
1680 1711 5.186021 CACAAGTTCCAGTACAGGAGATAGT 59.814 44.000 7.12 3.41 39.25 2.12
1688 1719 5.560966 AAAACACACAAGTTCCAGTACAG 57.439 39.130 0.00 0.00 0.00 2.74
1745 1792 6.036300 TCAGGCGGAATAAACAACTTAATACG 59.964 38.462 0.00 0.00 0.00 3.06
1753 1800 4.965119 AAGATCAGGCGGAATAAACAAC 57.035 40.909 0.00 0.00 0.00 3.32
1815 1862 5.904362 AAAACTCAGACATGGAAATAGCC 57.096 39.130 0.00 0.00 0.00 3.93
2011 2058 3.921119 TCAGAACATGACATGGTTTGC 57.079 42.857 17.12 1.22 32.55 3.68
2273 2321 1.404391 CAACAATCCTGCAGAGCATCC 59.596 52.381 17.39 0.00 38.13 3.51
2386 2434 7.104939 AGCCATTTGTGTGTGCATAATTAAAT 58.895 30.769 0.00 0.00 0.00 1.40
2403 2453 2.459555 ACCAGGGGATAAGCCATTTG 57.540 50.000 0.00 0.00 38.95 2.32
2459 2509 9.493206 CAAAACAAATAAATGGCATTAATCAGC 57.507 29.630 14.05 0.00 0.00 4.26
2937 2987 0.453793 AGAGAAGATCAGGCGACACG 59.546 55.000 0.00 0.00 0.00 4.49
2994 3044 9.826574 AAGTATTCAGTGTTTACAAGTTAGACA 57.173 29.630 7.60 0.00 0.00 3.41
3055 3105 2.489971 CTGAAGTTCCTTAACCGCACA 58.510 47.619 0.00 0.00 36.15 4.57
3546 3597 2.559668 CAAGCCCTCTGCATCAAAGAAA 59.440 45.455 0.00 0.00 44.83 2.52
3778 3829 9.118300 CTTTTGAGCTATGAAAGAATGTAGGAT 57.882 33.333 9.26 0.00 33.35 3.24
3791 3843 7.458409 AAAGATCAAAGCTTTTGAGCTATGA 57.542 32.000 21.42 11.29 43.45 2.15
3839 3891 5.980698 AACATCATCATACTTTCTCTGCG 57.019 39.130 0.00 0.00 0.00 5.18
4431 4483 5.583854 GCTCTCTATGACTTTGCTCAAATCA 59.416 40.000 0.00 3.54 0.00 2.57
4704 4756 1.609208 AACTGCTACCTGGTTGCTTG 58.391 50.000 28.44 22.93 35.51 4.01
4780 4834 6.212888 AGCCCTAAAAATGCTACTCAATTG 57.787 37.500 0.00 0.00 32.56 2.32
5018 5311 1.517242 CCTGAAGAGTTCACACAGGC 58.483 55.000 0.00 0.00 40.90 4.85
5047 5340 5.278463 GGCAAAGTTTCAGTTTAGCATCTCA 60.278 40.000 0.00 0.00 0.00 3.27
5110 5403 0.990374 ATGTTTCTCCTCCTGCTGCT 59.010 50.000 0.00 0.00 0.00 4.24
5435 5734 5.701224 AGGTTTTCCAAGGACAGTGATAAA 58.299 37.500 0.00 0.00 43.73 1.40
5470 5769 7.333423 ACAGTAAATTAATTGTAGCGAGCAAGA 59.667 33.333 0.39 0.00 0.00 3.02
5555 5854 5.639506 GCATTGAGACTGTTTTCTGTAGCTA 59.360 40.000 0.00 0.00 32.26 3.32
5644 5943 7.925483 TCCCTTGAACAATTAAAACAATGTGAG 59.075 33.333 0.00 0.00 0.00 3.51
5672 5971 3.809905 CCAATTGAAAACCGGGGAAAAA 58.190 40.909 6.32 0.00 0.00 1.94
5677 5976 0.037419 CAGCCAATTGAAAACCGGGG 60.037 55.000 6.32 0.00 0.00 5.73
5682 5981 6.024552 TCAGAATACCAGCCAATTGAAAAC 57.975 37.500 7.12 0.00 0.00 2.43
5752 6051 9.889128 TTGTAGAAAGTGATGATATCAACATGA 57.111 29.630 17.49 0.00 41.69 3.07
5882 6181 9.559958 ACAATCTTGCTTATTTTCAGTTAATCG 57.440 29.630 0.00 0.00 0.00 3.34
5888 6187 9.768662 ATTTGAACAATCTTGCTTATTTTCAGT 57.231 25.926 0.00 0.00 0.00 3.41
5915 6214 6.148150 TCAGAAAAATCATTTGCAAATCCAGC 59.852 34.615 21.70 7.95 0.00 4.85
5971 6273 2.158900 GCCGAGGAGATTCTGGAAATGA 60.159 50.000 0.00 0.00 0.00 2.57
6092 6394 9.840427 GCTAAATAAAGCATAGAAACTTCACAA 57.160 29.630 0.00 0.00 42.30 3.33
6135 6438 6.128526 GGACTAGTGCAACAATTTAGAGTCAC 60.129 42.308 9.84 0.00 41.43 3.67
6192 6499 1.747355 GCAGGGTGTCCATCTGAAATG 59.253 52.381 0.00 0.00 34.83 2.32
6408 6715 1.344942 CGTCGAAGTTGAGCCTTCCG 61.345 60.000 0.00 0.00 38.05 4.30
6560 6867 3.641436 TGTATCAATAGGTCGTGATGGCT 59.359 43.478 0.00 0.00 36.00 4.75
6608 6917 7.974501 ACTAAAACATCCAACACTACTAGATCG 59.025 37.037 0.00 0.00 0.00 3.69
6623 6932 8.723942 AACACATATCAGAGACTAAAACATCC 57.276 34.615 0.00 0.00 0.00 3.51
7004 7316 1.811359 CTCTACGGTGAAGTCGGAGTT 59.189 52.381 0.00 0.00 39.42 3.01
7034 7346 1.733402 CTGTTTGCGGGTTGGCTTCA 61.733 55.000 0.00 0.00 0.00 3.02
7511 7826 2.664402 TCTTTGCTCTGGCCTTCTTT 57.336 45.000 3.32 0.00 37.74 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.