Multiple sequence alignment - TraesCS7A01G264200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G264200 chr7A 100.000 3560 0 0 1 3560 262851299 262854858 0.000000e+00 6575.0
1 TraesCS7A01G264200 chr7A 89.925 268 20 3 491 752 231588052 231587786 4.400000e-89 339.0
2 TraesCS7A01G264200 chr7A 97.872 47 0 1 9 55 463446033 463446078 2.950000e-11 80.5
3 TraesCS7A01G264200 chr7A 100.000 29 0 0 473 501 231588099 231588071 2.000000e-03 54.7
4 TraesCS7A01G264200 chr7B 93.023 1935 88 23 796 2706 222552843 222554754 0.000000e+00 2782.0
5 TraesCS7A01G264200 chr7B 81.597 288 46 5 60 340 167035434 167035721 7.690000e-57 231.0
6 TraesCS7A01G264200 chr7B 87.500 64 7 1 2777 2840 663742341 663742403 4.930000e-09 73.1
7 TraesCS7A01G264200 chr5D 92.861 1681 72 14 871 2530 238670752 238669099 0.000000e+00 2396.0
8 TraesCS7A01G264200 chr7D 92.794 1138 47 15 1595 2712 246388398 246389520 0.000000e+00 1615.0
9 TraesCS7A01G264200 chr7D 96.938 849 23 1 751 1599 246373558 246374403 0.000000e+00 1421.0
10 TraesCS7A01G264200 chr7D 82.837 705 73 12 2709 3391 246389608 246390286 3.960000e-164 588.0
11 TraesCS7A01G264200 chr7D 92.581 310 23 0 62 371 246371432 246371741 2.520000e-121 446.0
12 TraesCS7A01G264200 chr7D 87.600 250 24 3 491 734 49379575 49379327 2.090000e-72 283.0
13 TraesCS7A01G264200 chr7D 95.763 118 5 0 356 473 246373448 246373565 1.300000e-44 191.0
14 TraesCS7A01G264200 chr7D 79.574 235 39 7 62 290 255056787 255056556 3.680000e-35 159.0
15 TraesCS7A01G264200 chr7D 83.846 130 14 3 3427 3556 246390294 246390416 2.250000e-22 117.0
16 TraesCS7A01G264200 chr2D 83.847 1201 149 32 1144 2323 624054038 624052862 0.000000e+00 1101.0
17 TraesCS7A01G264200 chr2D 83.403 1193 157 26 1150 2323 623947871 623949041 0.000000e+00 1068.0
18 TraesCS7A01G264200 chr2D 83.756 197 28 3 60 254 130807177 130807371 2.180000e-42 183.0
19 TraesCS7A01G264200 chr2A 83.139 1198 163 24 1144 2323 755340788 755339612 0.000000e+00 1057.0
20 TraesCS7A01G264200 chr2A 83.181 1201 155 31 1145 2323 755118652 755119827 0.000000e+00 1055.0
21 TraesCS7A01G264200 chr2A 91.020 245 19 3 491 734 105600287 105600529 9.530000e-86 327.0
22 TraesCS7A01G264200 chr2A 91.379 174 14 1 491 663 149199691 149199518 1.650000e-58 237.0
23 TraesCS7A01G264200 chr2A 87.640 89 5 2 629 712 467657800 467657713 8.130000e-17 99.0
24 TraesCS7A01G264200 chr2A 95.082 61 1 2 1 59 494502253 494502193 1.050000e-15 95.3
25 TraesCS7A01G264200 chr2A 100.000 29 0 0 723 751 48522036 48522008 2.000000e-03 54.7
26 TraesCS7A01G264200 chr2B 83.055 1198 164 26 1144 2323 765792807 765791631 0.000000e+00 1051.0
27 TraesCS7A01G264200 chr2B 82.456 1197 162 32 1145 2317 765586582 765587754 0.000000e+00 1003.0
28 TraesCS7A01G264200 chr2B 96.296 54 0 2 2 55 93999327 93999276 1.760000e-13 87.9
29 TraesCS7A01G264200 chr3A 90.566 265 22 3 493 756 736800216 736799954 7.310000e-92 348.0
30 TraesCS7A01G264200 chr3A 88.172 279 25 4 478 750 714586708 714586984 3.430000e-85 326.0
31 TraesCS7A01G264200 chr3A 88.000 50 6 0 463 512 42214649 42214698 3.840000e-05 60.2
32 TraesCS7A01G264200 chr6A 87.050 278 20 3 472 734 560640604 560640328 2.080000e-77 300.0
33 TraesCS7A01G264200 chr6A 96.078 51 2 0 9 59 617896522 617896572 2.280000e-12 84.2
34 TraesCS7A01G264200 chr5A 87.313 268 24 5 491 752 25862579 25862316 7.470000e-77 298.0
35 TraesCS7A01G264200 chr5A 81.443 291 46 7 59 342 556534868 556535157 7.690000e-57 231.0
36 TraesCS7A01G264200 chr5A 78.000 250 47 5 96 338 552324182 552324430 2.210000e-32 150.0
37 TraesCS7A01G264200 chr5A 92.000 50 3 1 6 55 477447247 477447295 6.380000e-08 69.4
38 TraesCS7A01G264200 chr6D 86.496 274 32 4 478 751 423793267 423793535 2.690000e-76 296.0
39 TraesCS7A01G264200 chr6D 78.682 258 42 10 60 307 381358732 381358478 3.680000e-35 159.0
40 TraesCS7A01G264200 chr1D 86.312 263 29 3 478 734 324488319 324488580 2.710000e-71 279.0
41 TraesCS7A01G264200 chr1B 82.807 285 43 4 62 340 670670315 670670031 2.120000e-62 250.0
42 TraesCS7A01G264200 chr1B 89.474 57 3 3 1 55 124009789 124009844 6.380000e-08 69.4
43 TraesCS7A01G264200 chr3B 72.945 669 146 28 1441 2087 686524880 686525535 2.170000e-47 200.0
44 TraesCS7A01G264200 chr3B 94.444 54 1 2 2 55 556853585 556853534 8.190000e-12 82.4
45 TraesCS7A01G264200 chr3B 95.652 46 2 0 468 513 71975481 71975526 1.370000e-09 75.0
46 TraesCS7A01G264200 chr1A 81.858 226 34 6 86 306 463926510 463926287 2.180000e-42 183.0
47 TraesCS7A01G264200 chr4D 80.808 99 19 0 2777 2875 8152564 8152466 1.060000e-10 78.7
48 TraesCS7A01G264200 chr5B 93.333 45 3 0 62 106 625126134 625126090 2.290000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G264200 chr7A 262851299 262854858 3559 False 6575.000000 6575 100.000000 1 3560 1 chr7A.!!$F1 3559
1 TraesCS7A01G264200 chr7B 222552843 222554754 1911 False 2782.000000 2782 93.023000 796 2706 1 chr7B.!!$F2 1910
2 TraesCS7A01G264200 chr5D 238669099 238670752 1653 True 2396.000000 2396 92.861000 871 2530 1 chr5D.!!$R1 1659
3 TraesCS7A01G264200 chr7D 246388398 246390416 2018 False 773.333333 1615 86.492333 1595 3556 3 chr7D.!!$F2 1961
4 TraesCS7A01G264200 chr7D 246371432 246374403 2971 False 686.000000 1421 95.094000 62 1599 3 chr7D.!!$F1 1537
5 TraesCS7A01G264200 chr2D 624052862 624054038 1176 True 1101.000000 1101 83.847000 1144 2323 1 chr2D.!!$R1 1179
6 TraesCS7A01G264200 chr2D 623947871 623949041 1170 False 1068.000000 1068 83.403000 1150 2323 1 chr2D.!!$F2 1173
7 TraesCS7A01G264200 chr2A 755339612 755340788 1176 True 1057.000000 1057 83.139000 1144 2323 1 chr2A.!!$R5 1179
8 TraesCS7A01G264200 chr2A 755118652 755119827 1175 False 1055.000000 1055 83.181000 1145 2323 1 chr2A.!!$F2 1178
9 TraesCS7A01G264200 chr2B 765791631 765792807 1176 True 1051.000000 1051 83.055000 1144 2323 1 chr2B.!!$R2 1179
10 TraesCS7A01G264200 chr2B 765586582 765587754 1172 False 1003.000000 1003 82.456000 1145 2317 1 chr2B.!!$F1 1172

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 2378 0.035820 TTTAGTGTGATGGGCCGGTC 60.036 55.000 1.90 0.0 0.00 4.79 F
722 2445 0.179134 TTTGCGTCGGGTTTTGGTTG 60.179 50.000 0.00 0.0 0.00 3.77 F
750 2473 1.002087 CCGAGGAATGGCCAGGTATAC 59.998 57.143 13.05 0.0 40.02 1.47 F
1712 3452 1.673808 GACTACCCCTACACCGCCAG 61.674 65.000 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1692 3432 1.380920 GGCGGTGTAGGGGTAGTCT 60.381 63.158 0.00 0.00 0.00 3.24 R
1941 3681 1.745489 GTCCCTGCCATTGTCGGTC 60.745 63.158 0.00 0.00 0.00 4.79 R
2101 3850 4.662961 GTTTGGCGGCTTGGGTGC 62.663 66.667 11.43 0.00 0.00 5.01 R
2897 4774 0.029300 CCACGTGCACAAAGTCTTGG 59.971 55.000 18.64 6.98 36.82 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.202829 TGGAAGAAAGGTGTGTGGTAC 57.797 47.619 0.00 0.00 0.00 3.34
21 22 2.775384 TGGAAGAAAGGTGTGTGGTACT 59.225 45.455 0.00 0.00 0.00 2.73
22 23 3.201266 TGGAAGAAAGGTGTGTGGTACTT 59.799 43.478 0.00 0.00 0.00 2.24
23 24 4.204799 GGAAGAAAGGTGTGTGGTACTTT 58.795 43.478 0.00 0.00 35.99 2.66
24 25 4.643334 GGAAGAAAGGTGTGTGGTACTTTT 59.357 41.667 0.00 0.00 33.66 2.27
25 26 5.824097 GGAAGAAAGGTGTGTGGTACTTTTA 59.176 40.000 0.00 0.00 33.66 1.52
26 27 6.017357 GGAAGAAAGGTGTGTGGTACTTTTAG 60.017 42.308 0.00 0.00 33.66 1.85
27 28 4.820173 AGAAAGGTGTGTGGTACTTTTAGC 59.180 41.667 0.00 0.00 33.66 3.09
28 29 4.432980 AAGGTGTGTGGTACTTTTAGCT 57.567 40.909 0.00 0.00 0.00 3.32
29 30 5.556006 AAGGTGTGTGGTACTTTTAGCTA 57.444 39.130 0.00 0.00 0.00 3.32
30 31 5.757099 AGGTGTGTGGTACTTTTAGCTAT 57.243 39.130 0.00 0.00 0.00 2.97
31 32 6.862469 AGGTGTGTGGTACTTTTAGCTATA 57.138 37.500 0.00 0.00 0.00 1.31
32 33 7.433537 AGGTGTGTGGTACTTTTAGCTATAT 57.566 36.000 0.00 0.00 0.00 0.86
33 34 7.272978 AGGTGTGTGGTACTTTTAGCTATATG 58.727 38.462 0.00 0.00 0.00 1.78
34 35 6.482308 GGTGTGTGGTACTTTTAGCTATATGG 59.518 42.308 0.00 0.00 0.00 2.74
35 36 6.018180 GTGTGTGGTACTTTTAGCTATATGGC 60.018 42.308 2.23 2.23 0.00 4.40
36 37 6.053005 GTGTGGTACTTTTAGCTATATGGCA 58.947 40.000 14.03 0.00 34.17 4.92
37 38 6.018180 GTGTGGTACTTTTAGCTATATGGCAC 60.018 42.308 14.03 0.54 34.17 5.01
55 56 3.550950 CACACGTGTGCCAAATATCAA 57.449 42.857 33.52 0.00 39.39 2.57
56 57 3.491356 CACACGTGTGCCAAATATCAAG 58.509 45.455 33.52 7.57 39.39 3.02
57 58 2.487762 ACACGTGTGCCAAATATCAAGG 59.512 45.455 22.71 0.00 0.00 3.61
58 59 2.487762 CACGTGTGCCAAATATCAAGGT 59.512 45.455 7.58 0.00 0.00 3.50
59 60 3.057596 CACGTGTGCCAAATATCAAGGTT 60.058 43.478 7.58 0.00 0.00 3.50
60 61 3.190535 ACGTGTGCCAAATATCAAGGTTC 59.809 43.478 0.00 0.00 0.00 3.62
66 67 7.173047 GTGTGCCAAATATCAAGGTTCAAATTT 59.827 33.333 0.00 0.00 0.00 1.82
169 170 8.605746 CCCATTAGCACATTGATGTTAAATTTG 58.394 33.333 0.00 0.00 39.39 2.32
195 196 8.430063 GTCATTTTTATCTCAAGCAATGTTGTG 58.570 33.333 0.00 0.00 0.00 3.33
245 246 6.623486 ACATACATTGATGGTGTGTCAATTG 58.377 36.000 0.00 0.00 42.08 2.32
251 252 8.533657 ACATTGATGGTGTGTCAATTGAATAAT 58.466 29.630 10.35 0.00 42.08 1.28
254 255 8.760103 TGATGGTGTGTCAATTGAATAATTTG 57.240 30.769 10.35 0.00 34.34 2.32
259 260 9.469807 GGTGTGTCAATTGAATAATTTGTTGTA 57.530 29.630 10.35 0.00 34.34 2.41
401 2124 0.535328 TCTAGACCTGCTCGGATCCG 60.535 60.000 28.62 28.62 41.35 4.18
408 2131 0.179100 CTGCTCGGATCCGACACATT 60.179 55.000 32.59 0.00 44.01 2.71
437 2160 7.333672 AGTCCAAAGAAAATCGATGTAGTAACC 59.666 37.037 0.00 0.00 0.00 2.85
450 2173 3.717913 TGTAGTAACCAAACCACCTTCCT 59.282 43.478 0.00 0.00 0.00 3.36
473 2196 0.811281 GCTAATTCGGCCTTGCAACT 59.189 50.000 0.00 0.00 0.00 3.16
474 2197 2.014128 GCTAATTCGGCCTTGCAACTA 58.986 47.619 0.00 0.00 0.00 2.24
475 2198 2.618709 GCTAATTCGGCCTTGCAACTAT 59.381 45.455 0.00 0.00 0.00 2.12
476 2199 3.813166 GCTAATTCGGCCTTGCAACTATA 59.187 43.478 0.00 0.00 0.00 1.31
477 2200 4.319549 GCTAATTCGGCCTTGCAACTATAC 60.320 45.833 0.00 0.00 0.00 1.47
478 2201 2.032680 TTCGGCCTTGCAACTATACC 57.967 50.000 0.00 0.00 0.00 2.73
479 2202 1.200519 TCGGCCTTGCAACTATACCT 58.799 50.000 0.00 0.00 0.00 3.08
480 2203 1.134521 TCGGCCTTGCAACTATACCTG 60.135 52.381 0.00 0.00 0.00 4.00
481 2204 1.680338 GGCCTTGCAACTATACCTGG 58.320 55.000 0.00 0.00 0.00 4.45
482 2205 1.025041 GCCTTGCAACTATACCTGGC 58.975 55.000 6.35 6.35 0.00 4.85
483 2206 1.680338 CCTTGCAACTATACCTGGCC 58.320 55.000 0.00 0.00 0.00 5.36
484 2207 1.064758 CCTTGCAACTATACCTGGCCA 60.065 52.381 4.71 4.71 0.00 5.36
485 2208 2.423373 CCTTGCAACTATACCTGGCCAT 60.423 50.000 5.51 0.00 0.00 4.40
486 2209 2.346766 TGCAACTATACCTGGCCATG 57.653 50.000 5.51 6.06 0.00 3.66
487 2210 1.133823 TGCAACTATACCTGGCCATGG 60.134 52.381 5.51 13.05 0.00 3.66
488 2211 1.819305 GCAACTATACCTGGCCATGGG 60.819 57.143 20.97 16.10 0.00 4.00
520 2243 4.096003 CGGCCCGACCTTGTCCAT 62.096 66.667 0.00 0.00 35.61 3.41
521 2244 2.438434 GGCCCGACCTTGTCCATG 60.438 66.667 0.00 0.00 34.51 3.66
522 2245 2.438434 GCCCGACCTTGTCCATGG 60.438 66.667 4.97 4.97 0.00 3.66
523 2246 2.272146 CCCGACCTTGTCCATGGG 59.728 66.667 13.02 0.00 0.00 4.00
524 2247 2.438434 CCGACCTTGTCCATGGGC 60.438 66.667 10.20 10.20 0.00 5.36
525 2248 2.438434 CGACCTTGTCCATGGGCC 60.438 66.667 15.27 4.53 30.24 5.80
526 2249 2.438434 GACCTTGTCCATGGGCCG 60.438 66.667 15.27 4.70 0.00 6.13
527 2250 3.995506 GACCTTGTCCATGGGCCGG 62.996 68.421 15.27 16.66 0.00 6.13
528 2251 4.820744 CCTTGTCCATGGGCCGGG 62.821 72.222 15.27 12.08 0.00 5.73
547 2270 2.851805 GCTCGGGCCTAAATTTTGAG 57.148 50.000 0.84 0.00 0.00 3.02
548 2271 1.202302 GCTCGGGCCTAAATTTTGAGC 60.202 52.381 0.84 9.49 40.31 4.26
549 2272 1.405463 CTCGGGCCTAAATTTTGAGCC 59.595 52.381 17.43 17.43 43.09 4.70
552 2275 1.470051 GGCCTAAATTTTGAGCCCGA 58.530 50.000 15.87 0.00 37.66 5.14
553 2276 1.822371 GGCCTAAATTTTGAGCCCGAA 59.178 47.619 15.87 0.00 37.66 4.30
554 2277 2.159240 GGCCTAAATTTTGAGCCCGAAG 60.159 50.000 15.87 0.00 37.66 3.79
555 2278 2.735444 GCCTAAATTTTGAGCCCGAAGC 60.735 50.000 0.00 0.00 44.25 3.86
556 2279 2.159240 CCTAAATTTTGAGCCCGAAGCC 60.159 50.000 0.00 0.00 45.47 4.35
557 2280 0.608130 AAATTTTGAGCCCGAAGCCC 59.392 50.000 0.00 0.00 45.47 5.19
558 2281 1.595093 AATTTTGAGCCCGAAGCCCG 61.595 55.000 0.00 0.00 45.47 6.13
588 2311 3.138128 CCCGGGCCCGTCAATTTC 61.138 66.667 40.52 0.93 37.81 2.17
589 2312 2.360600 CCGGGCCCGTCAATTTCA 60.361 61.111 40.52 0.00 37.81 2.69
590 2313 2.696759 CCGGGCCCGTCAATTTCAC 61.697 63.158 40.52 0.00 37.81 3.18
591 2314 2.696759 CGGGCCCGTCAATTTCACC 61.697 63.158 36.64 0.00 34.35 4.02
592 2315 1.605165 GGGCCCGTCAATTTCACCA 60.605 57.895 5.69 0.00 0.00 4.17
593 2316 0.970427 GGGCCCGTCAATTTCACCAT 60.970 55.000 5.69 0.00 0.00 3.55
594 2317 0.894835 GGCCCGTCAATTTCACCATT 59.105 50.000 0.00 0.00 0.00 3.16
595 2318 1.275010 GGCCCGTCAATTTCACCATTT 59.725 47.619 0.00 0.00 0.00 2.32
596 2319 2.494073 GGCCCGTCAATTTCACCATTTA 59.506 45.455 0.00 0.00 0.00 1.40
597 2320 3.056465 GGCCCGTCAATTTCACCATTTAA 60.056 43.478 0.00 0.00 0.00 1.52
598 2321 4.173256 GCCCGTCAATTTCACCATTTAAG 58.827 43.478 0.00 0.00 0.00 1.85
599 2322 4.743493 CCCGTCAATTTCACCATTTAAGG 58.257 43.478 0.00 0.00 0.00 2.69
600 2323 4.461081 CCCGTCAATTTCACCATTTAAGGA 59.539 41.667 0.00 0.00 0.00 3.36
601 2324 5.047660 CCCGTCAATTTCACCATTTAAGGAA 60.048 40.000 0.00 0.00 0.00 3.36
602 2325 6.092748 CCGTCAATTTCACCATTTAAGGAAG 58.907 40.000 0.00 0.00 0.00 3.46
603 2326 6.072175 CCGTCAATTTCACCATTTAAGGAAGA 60.072 38.462 0.00 0.00 0.00 2.87
604 2327 7.023575 CGTCAATTTCACCATTTAAGGAAGAG 58.976 38.462 0.00 0.00 0.00 2.85
605 2328 7.315890 GTCAATTTCACCATTTAAGGAAGAGG 58.684 38.462 0.00 0.00 0.00 3.69
606 2329 5.921962 ATTTCACCATTTAAGGAAGAGGC 57.078 39.130 0.00 0.00 0.00 4.70
607 2330 4.657814 TTCACCATTTAAGGAAGAGGCT 57.342 40.909 0.00 0.00 0.00 4.58
608 2331 4.657814 TCACCATTTAAGGAAGAGGCTT 57.342 40.909 0.00 0.00 0.00 4.35
609 2332 4.335416 TCACCATTTAAGGAAGAGGCTTG 58.665 43.478 0.00 0.00 0.00 4.01
610 2333 3.445096 CACCATTTAAGGAAGAGGCTTGG 59.555 47.826 0.00 0.00 0.00 3.61
611 2334 2.428530 CCATTTAAGGAAGAGGCTTGGC 59.571 50.000 0.00 0.00 0.00 4.52
643 2366 3.625745 CCTGACGGGCTTTTAGTGT 57.374 52.632 0.00 0.00 0.00 3.55
644 2367 1.156736 CCTGACGGGCTTTTAGTGTG 58.843 55.000 0.00 0.00 0.00 3.82
645 2368 1.270625 CCTGACGGGCTTTTAGTGTGA 60.271 52.381 0.00 0.00 0.00 3.58
646 2369 2.615493 CCTGACGGGCTTTTAGTGTGAT 60.615 50.000 0.00 0.00 0.00 3.06
647 2370 2.416547 CTGACGGGCTTTTAGTGTGATG 59.583 50.000 0.00 0.00 0.00 3.07
648 2371 1.737793 GACGGGCTTTTAGTGTGATGG 59.262 52.381 0.00 0.00 0.00 3.51
649 2372 1.094785 CGGGCTTTTAGTGTGATGGG 58.905 55.000 0.00 0.00 0.00 4.00
650 2373 0.817654 GGGCTTTTAGTGTGATGGGC 59.182 55.000 0.00 0.00 0.00 5.36
651 2374 0.817654 GGCTTTTAGTGTGATGGGCC 59.182 55.000 0.00 0.00 0.00 5.80
652 2375 0.451783 GCTTTTAGTGTGATGGGCCG 59.548 55.000 0.00 0.00 0.00 6.13
653 2376 1.094785 CTTTTAGTGTGATGGGCCGG 58.905 55.000 0.00 0.00 0.00 6.13
654 2377 0.402504 TTTTAGTGTGATGGGCCGGT 59.597 50.000 1.90 0.00 0.00 5.28
655 2378 0.035820 TTTAGTGTGATGGGCCGGTC 60.036 55.000 1.90 0.00 0.00 4.79
656 2379 0.907704 TTAGTGTGATGGGCCGGTCT 60.908 55.000 5.77 0.00 0.00 3.85
657 2380 0.907704 TAGTGTGATGGGCCGGTCTT 60.908 55.000 5.77 0.00 0.00 3.01
658 2381 2.040544 GTGTGATGGGCCGGTCTTG 61.041 63.158 5.77 0.00 0.00 3.02
659 2382 2.438434 GTGATGGGCCGGTCTTGG 60.438 66.667 5.77 0.00 0.00 3.61
660 2383 2.609299 TGATGGGCCGGTCTTGGA 60.609 61.111 5.77 0.00 0.00 3.53
661 2384 2.124695 GATGGGCCGGTCTTGGAC 60.125 66.667 5.77 0.00 35.71 4.02
673 2396 3.014623 GGTCTTGGACCCGATTTTTAGG 58.985 50.000 5.48 0.00 46.19 2.69
674 2397 2.422479 GTCTTGGACCCGATTTTTAGGC 59.578 50.000 0.00 0.00 0.00 3.93
675 2398 1.749063 CTTGGACCCGATTTTTAGGCC 59.251 52.381 0.00 0.00 0.00 5.19
676 2399 0.996583 TGGACCCGATTTTTAGGCCT 59.003 50.000 11.78 11.78 0.00 5.19
677 2400 1.340600 TGGACCCGATTTTTAGGCCTG 60.341 52.381 17.99 0.00 0.00 4.85
678 2401 1.064979 GGACCCGATTTTTAGGCCTGA 60.065 52.381 17.99 3.42 0.00 3.86
679 2402 2.014857 GACCCGATTTTTAGGCCTGAC 58.985 52.381 17.99 0.00 0.00 3.51
680 2403 1.014352 CCCGATTTTTAGGCCTGACG 58.986 55.000 17.99 6.93 0.00 4.35
681 2404 1.014352 CCGATTTTTAGGCCTGACGG 58.986 55.000 17.99 12.92 0.00 4.79
719 2442 3.347411 TTTTTGCGTCGGGTTTTGG 57.653 47.368 0.00 0.00 0.00 3.28
720 2443 0.531200 TTTTTGCGTCGGGTTTTGGT 59.469 45.000 0.00 0.00 0.00 3.67
721 2444 0.531200 TTTTGCGTCGGGTTTTGGTT 59.469 45.000 0.00 0.00 0.00 3.67
722 2445 0.179134 TTTGCGTCGGGTTTTGGTTG 60.179 50.000 0.00 0.00 0.00 3.77
723 2446 2.005960 TTGCGTCGGGTTTTGGTTGG 62.006 55.000 0.00 0.00 0.00 3.77
724 2447 2.333581 CGTCGGGTTTTGGTTGGC 59.666 61.111 0.00 0.00 0.00 4.52
725 2448 2.732016 GTCGGGTTTTGGTTGGCC 59.268 61.111 0.00 0.00 0.00 5.36
726 2449 2.522193 TCGGGTTTTGGTTGGCCC 60.522 61.111 0.00 0.00 37.79 5.80
728 2451 3.621805 GGGTTTTGGTTGGCCCGG 61.622 66.667 0.00 0.00 35.15 5.73
729 2452 4.308458 GGTTTTGGTTGGCCCGGC 62.308 66.667 0.00 0.00 35.15 6.13
745 2468 4.883354 GCCCGAGGAATGGCCAGG 62.883 72.222 13.05 6.01 41.97 4.45
746 2469 3.411517 CCCGAGGAATGGCCAGGT 61.412 66.667 13.05 0.12 40.02 4.00
747 2470 2.070039 CCCGAGGAATGGCCAGGTA 61.070 63.158 13.05 0.00 40.02 3.08
748 2471 1.418908 CCCGAGGAATGGCCAGGTAT 61.419 60.000 13.05 0.00 40.02 2.73
749 2472 1.348064 CCGAGGAATGGCCAGGTATA 58.652 55.000 13.05 0.00 40.02 1.47
750 2473 1.002087 CCGAGGAATGGCCAGGTATAC 59.998 57.143 13.05 0.00 40.02 1.47
751 2474 1.971357 CGAGGAATGGCCAGGTATACT 59.029 52.381 13.05 2.95 40.02 2.12
752 2475 2.368875 CGAGGAATGGCCAGGTATACTT 59.631 50.000 13.05 0.00 40.02 2.24
753 2476 3.744660 GAGGAATGGCCAGGTATACTTG 58.255 50.000 13.05 7.99 40.02 3.16
754 2477 2.158608 AGGAATGGCCAGGTATACTTGC 60.159 50.000 13.05 3.71 40.02 4.01
755 2478 2.422803 GGAATGGCCAGGTATACTTGCA 60.423 50.000 13.05 3.91 39.51 4.08
756 2479 3.287222 GAATGGCCAGGTATACTTGCAA 58.713 45.455 13.05 0.00 39.51 4.08
757 2480 2.122783 TGGCCAGGTATACTTGCAAC 57.877 50.000 0.00 2.83 39.51 4.17
799 2522 2.830104 ACAAAACCTCTTACGAACGCT 58.170 42.857 0.00 0.00 0.00 5.07
841 2565 2.585900 TCTACCAGCCCCGATCCTATAT 59.414 50.000 0.00 0.00 0.00 0.86
842 2566 3.789840 TCTACCAGCCCCGATCCTATATA 59.210 47.826 0.00 0.00 0.00 0.86
843 2567 2.748388 ACCAGCCCCGATCCTATATAC 58.252 52.381 0.00 0.00 0.00 1.47
990 2727 2.551270 CAAGACAAGCGCGACACC 59.449 61.111 12.10 0.00 0.00 4.16
1080 2817 4.426112 CTCGCCTCGTCAGCAGCA 62.426 66.667 0.00 0.00 0.00 4.41
1212 2949 4.735132 GGCCGCTCGTACAGTGCA 62.735 66.667 0.00 0.00 39.15 4.57
1458 3198 2.524044 TCCGTGGACTGGAGGACA 59.476 61.111 0.00 0.00 0.00 4.02
1692 3432 2.577059 GGCATCGACACGGAGGAA 59.423 61.111 0.00 0.00 0.00 3.36
1712 3452 1.673808 GACTACCCCTACACCGCCAG 61.674 65.000 0.00 0.00 0.00 4.85
1788 3528 2.893398 GAGTCCGTGCCCGAGAAT 59.107 61.111 0.00 0.00 35.63 2.40
1891 3631 2.446994 AGTCGGGGGTGTTCACCA 60.447 61.111 21.25 0.47 39.29 4.17
2335 4084 1.265905 GCTCCAAGGTACCAAACAACG 59.734 52.381 15.94 0.00 0.00 4.10
2402 4154 4.423732 GGACTAATTTGCATTGCACGAAT 58.576 39.130 11.66 6.79 38.71 3.34
2438 4198 4.748102 GTGCTGATATTTTTGCATGGATGG 59.252 41.667 0.00 0.00 37.76 3.51
2563 4335 2.771943 TCCGAATTGGACATCTAGGCTT 59.228 45.455 0.00 0.00 43.74 4.35
2565 4337 3.947834 CCGAATTGGACATCTAGGCTTTT 59.052 43.478 0.00 0.00 42.00 2.27
2566 4338 4.399303 CCGAATTGGACATCTAGGCTTTTT 59.601 41.667 0.00 0.00 42.00 1.94
2611 4388 7.325579 GCGCATACTCCTTAGTTACAATAGTAC 59.674 40.741 0.30 0.00 37.15 2.73
2674 4451 8.151141 TGTACATACGAGATACGAGAATTTCT 57.849 34.615 0.00 0.00 45.77 2.52
2680 4457 7.098074 ACGAGATACGAGAATTTCTACCTTT 57.902 36.000 0.00 0.00 45.77 3.11
2681 4458 8.218338 ACGAGATACGAGAATTTCTACCTTTA 57.782 34.615 0.00 0.00 45.77 1.85
2699 4476 7.454260 ACCTTTATTGAAGATCAAACACTCC 57.546 36.000 0.00 0.00 40.12 3.85
2702 4479 8.239998 CCTTTATTGAAGATCAAACACTCCTTC 58.760 37.037 0.00 0.00 40.12 3.46
2717 4586 8.723942 AACACTCCTTCTATTATTGTCATGAC 57.276 34.615 19.27 19.27 0.00 3.06
2730 4599 6.916360 ATTGTCATGACTTAAATTGGGTGT 57.084 33.333 25.55 0.00 0.00 4.16
2736 4613 9.191995 GTCATGACTTAAATTGGGTGTTTAAAG 57.808 33.333 18.83 0.00 32.45 1.85
2764 4641 6.618287 TGAATTTATTACAGAAGCCCATCG 57.382 37.500 0.00 0.00 0.00 3.84
2771 4648 3.914426 ACAGAAGCCCATCGAAAGTAT 57.086 42.857 0.00 0.00 0.00 2.12
2813 4690 7.989741 AGAATTACATCGAGATCTTTGGACAAT 59.010 33.333 0.00 0.00 0.00 2.71
2827 4704 3.395639 TGGACAATCGAACAACCACTAC 58.604 45.455 0.00 0.00 0.00 2.73
2828 4705 2.740447 GGACAATCGAACAACCACTACC 59.260 50.000 0.00 0.00 0.00 3.18
2846 4723 1.082756 CGCCGTCAGAACAAGTTGC 60.083 57.895 1.81 0.00 0.00 4.17
2850 4727 1.403679 CCGTCAGAACAAGTTGCCAAA 59.596 47.619 1.81 0.00 0.00 3.28
2871 4748 1.227853 GTTGTTGTCGCCACTCCCT 60.228 57.895 0.00 0.00 0.00 4.20
2887 4764 3.135167 ACTCCCTTACCGAACTTTGTCAA 59.865 43.478 0.00 0.00 0.00 3.18
2891 4768 4.700213 CCCTTACCGAACTTTGTCAATGAT 59.300 41.667 5.52 0.00 0.00 2.45
2896 4773 3.941483 CCGAACTTTGTCAATGATAGCCT 59.059 43.478 5.52 0.00 0.00 4.58
2897 4774 4.034510 CCGAACTTTGTCAATGATAGCCTC 59.965 45.833 5.52 0.00 0.00 4.70
2898 4775 4.034510 CGAACTTTGTCAATGATAGCCTCC 59.965 45.833 5.52 0.00 0.00 4.30
2899 4776 4.574674 ACTTTGTCAATGATAGCCTCCA 57.425 40.909 5.52 0.00 0.00 3.86
2919 4796 3.521308 GACTTTGTGCACGTGGCCG 62.521 63.158 18.88 0.00 43.89 6.13
2929 4806 4.129757 CGTGGCCGTAAATACCCC 57.870 61.111 0.00 0.00 0.00 4.95
2930 4807 1.221293 CGTGGCCGTAAATACCCCA 59.779 57.895 0.00 0.00 0.00 4.96
2951 4840 3.013921 ACAGTCGTTGTTGTTGAACCAT 58.986 40.909 0.00 0.00 36.31 3.55
2956 4845 4.859798 GTCGTTGTTGTTGAACCATTGAAA 59.140 37.500 0.00 0.00 0.00 2.69
2961 4850 7.254387 CGTTGTTGTTGAACCATTGAAATGATT 60.254 33.333 4.58 0.00 38.70 2.57
2971 4860 7.781324 ACCATTGAAATGATTTGAAGTACCT 57.219 32.000 4.58 0.00 38.70 3.08
2976 4865 7.202016 TGAAATGATTTGAAGTACCTGACAC 57.798 36.000 0.00 0.00 0.00 3.67
2982 4871 7.227873 TGATTTGAAGTACCTGACACCAAATA 58.772 34.615 0.00 0.00 39.91 1.40
2986 4875 6.539173 TGAAGTACCTGACACCAAATATTGT 58.461 36.000 0.00 0.00 0.00 2.71
2998 4887 0.944386 AATATTGTCATCGCCCACGC 59.056 50.000 0.00 0.00 39.84 5.34
3018 4907 2.805657 GCGCGATGATAACCCTAACCTT 60.806 50.000 12.10 0.00 0.00 3.50
3027 4916 2.808906 ACCCTAACCTTGCCAATCTC 57.191 50.000 0.00 0.00 0.00 2.75
3028 4917 1.992557 ACCCTAACCTTGCCAATCTCA 59.007 47.619 0.00 0.00 0.00 3.27
3033 4922 2.610438 ACCTTGCCAATCTCACCATT 57.390 45.000 0.00 0.00 0.00 3.16
3035 4924 2.173519 CCTTGCCAATCTCACCATTGT 58.826 47.619 0.00 0.00 32.61 2.71
3037 4926 2.583024 TGCCAATCTCACCATTGTCA 57.417 45.000 0.00 0.00 32.61 3.58
3040 4929 2.557924 GCCAATCTCACCATTGTCAACA 59.442 45.455 0.00 0.00 32.61 3.33
3042 4931 3.569277 CCAATCTCACCATTGTCAACACA 59.431 43.478 0.00 0.00 32.61 3.72
3046 4935 2.807967 CTCACCATTGTCAACACACGAT 59.192 45.455 0.00 0.00 29.76 3.73
3059 4948 2.028385 ACACACGATGAGAACCCTAACC 60.028 50.000 0.00 0.00 0.00 2.85
3073 4962 0.976073 CTAACCTCGCCTCCCCAAGA 60.976 60.000 0.00 0.00 0.00 3.02
3094 4983 5.996219 AGAAGACGACATGAATCTATCTCG 58.004 41.667 0.00 0.00 31.59 4.04
3095 4984 5.760743 AGAAGACGACATGAATCTATCTCGA 59.239 40.000 0.00 0.00 30.33 4.04
3100 4989 5.218885 CGACATGAATCTATCTCGAAGCTT 58.781 41.667 0.00 0.00 0.00 3.74
3109 4998 5.734720 TCTATCTCGAAGCTTTGTCCAAAT 58.265 37.500 13.49 4.47 0.00 2.32
3111 5000 3.738982 TCTCGAAGCTTTGTCCAAATGA 58.261 40.909 13.49 0.43 0.00 2.57
3120 5009 5.302568 AGCTTTGTCCAAATGAATGAACTCA 59.697 36.000 0.00 0.00 0.00 3.41
3130 5019 1.004745 GAATGAACTCAAGGAGGCCCA 59.995 52.381 0.00 0.00 33.35 5.36
3134 5023 1.283321 GAACTCAAGGAGGCCCAGAAT 59.717 52.381 0.00 0.00 33.35 2.40
3153 5042 7.416890 CCCAGAATACTAACTCGAAGATGAAGT 60.417 40.741 0.00 0.00 33.89 3.01
3158 5047 5.844004 ACTAACTCGAAGATGAAGTGTTGT 58.156 37.500 0.00 0.00 33.89 3.32
3166 5055 1.061131 GATGAAGTGTTGTCATCCGCG 59.939 52.381 0.00 0.00 43.73 6.46
3168 5057 2.548587 GAAGTGTTGTCATCCGCGCG 62.549 60.000 25.67 25.67 0.00 6.86
3215 5104 5.946942 ACCCTTAACCTAAACTACTAGCC 57.053 43.478 0.00 0.00 0.00 3.93
3216 5105 5.344566 ACCCTTAACCTAAACTACTAGCCA 58.655 41.667 0.00 0.00 0.00 4.75
3222 5111 3.890147 ACCTAAACTACTAGCCAGATCCG 59.110 47.826 0.00 0.00 0.00 4.18
3249 5138 1.446366 GGATTCTCCTACCGGCCAC 59.554 63.158 0.00 0.00 32.53 5.01
3250 5139 1.049289 GGATTCTCCTACCGGCCACT 61.049 60.000 0.00 0.00 32.53 4.00
3251 5140 0.105039 GATTCTCCTACCGGCCACTG 59.895 60.000 0.00 0.00 0.00 3.66
3252 5141 0.325296 ATTCTCCTACCGGCCACTGA 60.325 55.000 0.00 0.00 0.00 3.41
3253 5142 0.543410 TTCTCCTACCGGCCACTGAA 60.543 55.000 0.00 0.00 0.00 3.02
3254 5143 0.543410 TCTCCTACCGGCCACTGAAA 60.543 55.000 0.00 0.00 0.00 2.69
3255 5144 0.541863 CTCCTACCGGCCACTGAAAT 59.458 55.000 0.00 0.00 0.00 2.17
3256 5145 0.988832 TCCTACCGGCCACTGAAATT 59.011 50.000 0.00 0.00 0.00 1.82
3257 5146 1.065709 TCCTACCGGCCACTGAAATTC 60.066 52.381 0.00 0.00 0.00 2.17
3258 5147 1.065418 CCTACCGGCCACTGAAATTCT 60.065 52.381 0.00 0.00 0.00 2.40
3259 5148 2.280628 CTACCGGCCACTGAAATTCTC 58.719 52.381 0.00 0.00 0.00 2.87
3260 5149 0.322546 ACCGGCCACTGAAATTCTCC 60.323 55.000 0.00 0.00 0.00 3.71
3261 5150 0.035056 CCGGCCACTGAAATTCTCCT 60.035 55.000 2.24 0.00 0.00 3.69
3262 5151 1.209504 CCGGCCACTGAAATTCTCCTA 59.790 52.381 2.24 0.00 0.00 2.94
3263 5152 2.158755 CCGGCCACTGAAATTCTCCTAT 60.159 50.000 2.24 0.00 0.00 2.57
3264 5153 3.134458 CGGCCACTGAAATTCTCCTATC 58.866 50.000 2.24 0.00 0.00 2.08
3265 5154 3.134458 GGCCACTGAAATTCTCCTATCG 58.866 50.000 0.00 0.00 0.00 2.92
3266 5155 3.134458 GCCACTGAAATTCTCCTATCGG 58.866 50.000 0.00 0.00 0.00 4.18
3267 5156 3.134458 CCACTGAAATTCTCCTATCGGC 58.866 50.000 0.00 0.00 0.00 5.54
3268 5157 3.134458 CACTGAAATTCTCCTATCGGCC 58.866 50.000 0.00 0.00 0.00 6.13
3269 5158 2.224066 ACTGAAATTCTCCTATCGGCCG 60.224 50.000 22.12 22.12 0.00 6.13
3301 5190 0.376152 GTGAATCCATGTGCTCGCTG 59.624 55.000 0.00 0.00 0.00 5.18
3303 5192 0.935898 GAATCCATGTGCTCGCTGAG 59.064 55.000 0.00 1.80 0.00 3.35
3305 5194 1.332889 ATCCATGTGCTCGCTGAGGA 61.333 55.000 7.50 2.28 0.00 3.71
3328 5218 0.961753 CCTTGAAGGGTGAGTTTGCC 59.038 55.000 2.50 0.00 0.00 4.52
3357 5247 8.823220 ACTGCTAAATTGGGTACTTATTCATT 57.177 30.769 0.00 0.00 0.00 2.57
3383 5273 7.745620 ATAGTATGTACGTCATCAGTCATGA 57.254 36.000 0.00 0.00 39.39 3.07
3398 5288 8.951614 ATCAGTCATGATGGGAAAATTCATAT 57.048 30.769 0.00 0.00 44.67 1.78
3400 5290 9.865152 TCAGTCATGATGGGAAAATTCATATAA 57.135 29.630 0.00 0.00 0.00 0.98
3407 5297 8.703743 TGATGGGAAAATTCATATAAAACCTGG 58.296 33.333 0.00 0.00 0.00 4.45
3408 5298 8.622572 ATGGGAAAATTCATATAAAACCTGGT 57.377 30.769 0.00 0.00 0.00 4.00
3409 5299 8.073467 TGGGAAAATTCATATAAAACCTGGTC 57.927 34.615 0.00 0.00 0.00 4.02
3410 5300 7.147983 TGGGAAAATTCATATAAAACCTGGTCG 60.148 37.037 0.00 0.00 0.00 4.79
3411 5301 7.147966 GGGAAAATTCATATAAAACCTGGTCGT 60.148 37.037 0.00 0.00 0.00 4.34
3412 5302 7.700656 GGAAAATTCATATAAAACCTGGTCGTG 59.299 37.037 0.00 0.00 0.00 4.35
3413 5303 6.693315 AATTCATATAAAACCTGGTCGTGG 57.307 37.500 0.00 0.00 0.00 4.94
3414 5304 4.145365 TCATATAAAACCTGGTCGTGGG 57.855 45.455 0.00 0.00 0.00 4.61
3415 5305 2.406596 TATAAAACCTGGTCGTGGGC 57.593 50.000 0.00 0.00 0.00 5.36
3416 5306 0.696501 ATAAAACCTGGTCGTGGGCT 59.303 50.000 0.00 0.00 0.00 5.19
3417 5307 0.475044 TAAAACCTGGTCGTGGGCTT 59.525 50.000 0.00 0.00 0.00 4.35
3418 5308 0.822121 AAAACCTGGTCGTGGGCTTC 60.822 55.000 0.00 0.00 0.00 3.86
3419 5309 1.990160 AAACCTGGTCGTGGGCTTCA 61.990 55.000 0.00 0.00 0.00 3.02
3420 5310 2.046892 CCTGGTCGTGGGCTTCAG 60.047 66.667 0.00 0.00 0.00 3.02
3421 5311 2.583441 CCTGGTCGTGGGCTTCAGA 61.583 63.158 0.00 0.00 0.00 3.27
3422 5312 1.599047 CTGGTCGTGGGCTTCAGAT 59.401 57.895 0.00 0.00 0.00 2.90
3423 5313 0.824109 CTGGTCGTGGGCTTCAGATA 59.176 55.000 0.00 0.00 0.00 1.98
3424 5314 1.414181 CTGGTCGTGGGCTTCAGATAT 59.586 52.381 0.00 0.00 0.00 1.63
3425 5315 2.628178 CTGGTCGTGGGCTTCAGATATA 59.372 50.000 0.00 0.00 0.00 0.86
3451 5341 0.687354 AACTCCATTGAGCGACACCT 59.313 50.000 0.00 0.00 42.74 4.00
3456 5346 1.675714 CCATTGAGCGACACCTAGCAA 60.676 52.381 0.00 0.00 35.48 3.91
3460 5350 1.202256 TGAGCGACACCTAGCAATACG 60.202 52.381 0.00 0.00 35.48 3.06
3462 5352 1.681793 AGCGACACCTAGCAATACGAT 59.318 47.619 0.00 0.00 35.48 3.73
3542 5432 1.508632 TCCAAGTTTAGTGTGCTCGC 58.491 50.000 0.00 0.00 0.00 5.03
3546 5436 1.302192 GTTTAGTGTGCTCGCCCCA 60.302 57.895 0.00 0.00 0.00 4.96
3548 5438 0.887387 TTTAGTGTGCTCGCCCCAAC 60.887 55.000 0.00 0.00 0.00 3.77
3556 5446 3.636820 TCGCCCCAACGGTGATAT 58.363 55.556 0.00 0.00 46.59 1.63
3557 5447 1.444250 TCGCCCCAACGGTGATATC 59.556 57.895 0.00 0.00 46.59 1.63
3558 5448 1.145156 CGCCCCAACGGTGATATCA 59.855 57.895 0.00 0.00 45.94 2.15
3559 5449 0.250295 CGCCCCAACGGTGATATCAT 60.250 55.000 9.02 0.00 45.94 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.775384 AGTACCACACACCTTTCTTCCA 59.225 45.455 0.00 0.00 0.00 3.53
1 2 3.487120 AGTACCACACACCTTTCTTCC 57.513 47.619 0.00 0.00 0.00 3.46
2 3 5.830000 AAAAGTACCACACACCTTTCTTC 57.170 39.130 0.00 0.00 0.00 2.87
3 4 5.298527 GCTAAAAGTACCACACACCTTTCTT 59.701 40.000 0.00 0.00 0.00 2.52
4 5 4.820173 GCTAAAAGTACCACACACCTTTCT 59.180 41.667 0.00 0.00 0.00 2.52
5 6 4.820173 AGCTAAAAGTACCACACACCTTTC 59.180 41.667 0.00 0.00 0.00 2.62
6 7 4.788679 AGCTAAAAGTACCACACACCTTT 58.211 39.130 0.00 0.00 0.00 3.11
7 8 4.432980 AGCTAAAAGTACCACACACCTT 57.567 40.909 0.00 0.00 0.00 3.50
8 9 5.757099 ATAGCTAAAAGTACCACACACCT 57.243 39.130 0.00 0.00 0.00 4.00
9 10 6.482308 CCATATAGCTAAAAGTACCACACACC 59.518 42.308 0.00 0.00 0.00 4.16
10 11 6.018180 GCCATATAGCTAAAAGTACCACACAC 60.018 42.308 0.00 0.00 0.00 3.82
11 12 6.053005 GCCATATAGCTAAAAGTACCACACA 58.947 40.000 0.00 0.00 0.00 3.72
12 13 6.018180 GTGCCATATAGCTAAAAGTACCACAC 60.018 42.308 0.00 0.00 0.00 3.82
13 14 6.053005 GTGCCATATAGCTAAAAGTACCACA 58.947 40.000 0.00 0.00 0.00 4.17
14 15 6.018180 GTGTGCCATATAGCTAAAAGTACCAC 60.018 42.308 0.00 0.89 0.00 4.16
15 16 6.053005 GTGTGCCATATAGCTAAAAGTACCA 58.947 40.000 0.00 0.00 0.00 3.25
16 17 5.176958 CGTGTGCCATATAGCTAAAAGTACC 59.823 44.000 0.00 0.00 0.00 3.34
17 18 5.751990 ACGTGTGCCATATAGCTAAAAGTAC 59.248 40.000 0.00 0.00 0.00 2.73
18 19 5.751509 CACGTGTGCCATATAGCTAAAAGTA 59.248 40.000 7.58 0.00 0.00 2.24
19 20 4.570772 CACGTGTGCCATATAGCTAAAAGT 59.429 41.667 7.58 0.00 0.00 2.66
20 21 4.570772 ACACGTGTGCCATATAGCTAAAAG 59.429 41.667 22.71 0.00 0.00 2.27
21 22 4.331443 CACACGTGTGCCATATAGCTAAAA 59.669 41.667 33.52 0.00 39.39 1.52
22 23 3.868661 CACACGTGTGCCATATAGCTAAA 59.131 43.478 33.52 0.00 39.39 1.85
23 24 3.453424 CACACGTGTGCCATATAGCTAA 58.547 45.455 33.52 0.00 39.39 3.09
24 25 3.092334 CACACGTGTGCCATATAGCTA 57.908 47.619 33.52 0.00 39.39 3.32
25 26 1.939974 CACACGTGTGCCATATAGCT 58.060 50.000 33.52 0.00 39.39 3.32
36 37 2.487762 CCTTGATATTTGGCACACGTGT 59.512 45.455 17.22 17.22 39.29 4.49
37 38 2.487762 ACCTTGATATTTGGCACACGTG 59.512 45.455 15.48 15.48 39.29 4.49
38 39 2.790433 ACCTTGATATTTGGCACACGT 58.210 42.857 0.00 0.00 39.29 4.49
39 40 3.190327 TGAACCTTGATATTTGGCACACG 59.810 43.478 0.00 0.00 39.29 4.49
40 41 4.782019 TGAACCTTGATATTTGGCACAC 57.218 40.909 0.00 0.00 39.29 3.82
41 42 5.798125 TTTGAACCTTGATATTTGGCACA 57.202 34.783 0.00 0.00 0.00 4.57
42 43 7.387397 TCAAATTTGAACCTTGATATTTGGCAC 59.613 33.333 18.45 0.00 35.05 5.01
43 44 7.448420 TCAAATTTGAACCTTGATATTTGGCA 58.552 30.769 18.45 0.00 35.05 4.92
44 45 7.903995 TCAAATTTGAACCTTGATATTTGGC 57.096 32.000 18.45 0.00 35.05 4.52
50 51 9.829507 ACAATGTTTCAAATTTGAACCTTGATA 57.170 25.926 31.45 20.04 45.99 2.15
51 52 8.735692 ACAATGTTTCAAATTTGAACCTTGAT 57.264 26.923 31.45 21.76 45.99 2.57
52 53 8.558973 AACAATGTTTCAAATTTGAACCTTGA 57.441 26.923 31.45 19.66 45.99 3.02
53 54 9.063739 CAAACAATGTTTCAAATTTGAACCTTG 57.936 29.630 28.78 28.00 45.99 3.61
54 55 9.007901 TCAAACAATGTTTCAAATTTGAACCTT 57.992 25.926 28.78 19.00 45.99 3.50
55 56 8.558973 TCAAACAATGTTTCAAATTTGAACCT 57.441 26.923 28.78 15.62 45.99 3.50
56 57 8.663911 TCTCAAACAATGTTTCAAATTTGAACC 58.336 29.630 28.78 23.57 45.99 3.62
122 123 4.082733 GGGCCTAAACTAAAGCTCAACTTG 60.083 45.833 0.84 0.00 39.09 3.16
124 125 3.073946 TGGGCCTAAACTAAAGCTCAACT 59.926 43.478 4.53 0.00 31.42 3.16
129 130 4.207955 GCTAATGGGCCTAAACTAAAGCT 58.792 43.478 4.53 0.00 0.00 3.74
169 170 8.430063 CACAACATTGCTTGAGATAAAAATGAC 58.570 33.333 0.00 0.00 0.00 3.06
267 268 7.492994 GTCCCTGTTGCACATTAAAAAGTTTTA 59.507 33.333 0.24 0.00 0.00 1.52
271 272 4.202212 GGTCCCTGTTGCACATTAAAAAGT 60.202 41.667 0.00 0.00 0.00 2.66
307 308 3.196648 GCACGGGGCAATTGGTAG 58.803 61.111 7.72 0.00 43.97 3.18
401 2124 5.514274 TTTTCTTTGGACTCCAATGTGTC 57.486 39.130 18.64 0.00 43.55 3.67
408 2131 4.651778 ACATCGATTTTCTTTGGACTCCA 58.348 39.130 0.00 0.00 0.00 3.86
427 2150 4.352893 AGGAAGGTGGTTTGGTTACTACAT 59.647 41.667 0.00 0.00 31.79 2.29
437 2160 1.402787 AGCACAAGGAAGGTGGTTTG 58.597 50.000 0.00 0.00 43.84 2.93
450 2173 0.525761 GCAAGGCCGAATTAGCACAA 59.474 50.000 0.00 0.00 0.00 3.33
503 2226 4.096003 ATGGACAAGGTCGGGCCG 62.096 66.667 22.51 22.51 43.70 6.13
504 2227 2.438434 CATGGACAAGGTCGGGCC 60.438 66.667 0.00 0.00 32.65 5.80
505 2228 2.438434 CCATGGACAAGGTCGGGC 60.438 66.667 5.56 0.00 32.65 6.13
506 2229 2.272146 CCCATGGACAAGGTCGGG 59.728 66.667 15.22 0.00 32.65 5.14
507 2230 2.438434 GCCCATGGACAAGGTCGG 60.438 66.667 15.22 0.00 32.65 4.79
508 2231 2.438434 GGCCCATGGACAAGGTCG 60.438 66.667 15.22 0.00 32.65 4.79
509 2232 2.438434 CGGCCCATGGACAAGGTC 60.438 66.667 15.22 0.00 0.00 3.85
510 2233 4.047125 CCGGCCCATGGACAAGGT 62.047 66.667 15.22 0.00 0.00 3.50
511 2234 4.820744 CCCGGCCCATGGACAAGG 62.821 72.222 15.22 9.16 0.00 3.61
528 2251 1.202302 GCTCAAAATTTAGGCCCGAGC 60.202 52.381 0.00 0.55 37.81 5.03
529 2252 1.405463 GGCTCAAAATTTAGGCCCGAG 59.595 52.381 14.33 5.84 37.12 4.63
530 2253 1.470051 GGCTCAAAATTTAGGCCCGA 58.530 50.000 14.33 0.00 37.12 5.14
534 2257 2.735444 GCTTCGGGCTCAAAATTTAGGC 60.735 50.000 6.07 6.07 38.06 3.93
535 2258 2.159240 GGCTTCGGGCTCAAAATTTAGG 60.159 50.000 0.00 0.00 41.46 2.69
536 2259 2.159240 GGGCTTCGGGCTCAAAATTTAG 60.159 50.000 0.00 0.00 42.01 1.85
537 2260 1.822371 GGGCTTCGGGCTCAAAATTTA 59.178 47.619 0.00 0.00 42.01 1.40
538 2261 0.608130 GGGCTTCGGGCTCAAAATTT 59.392 50.000 1.83 0.00 42.01 1.82
539 2262 1.595093 CGGGCTTCGGGCTCAAAATT 61.595 55.000 2.50 0.00 42.70 1.82
540 2263 2.046285 CGGGCTTCGGGCTCAAAAT 61.046 57.895 2.50 0.00 42.70 1.82
541 2264 2.671619 CGGGCTTCGGGCTCAAAA 60.672 61.111 2.50 0.00 42.70 2.44
571 2294 3.138128 GAAATTGACGGGCCCGGG 61.138 66.667 44.99 22.37 44.69 5.73
572 2295 2.360600 TGAAATTGACGGGCCCGG 60.361 61.111 44.99 28.13 44.69 5.73
573 2296 2.696759 GGTGAAATTGACGGGCCCG 61.697 63.158 42.17 42.17 46.03 6.13
574 2297 0.970427 ATGGTGAAATTGACGGGCCC 60.970 55.000 13.57 13.57 0.00 5.80
575 2298 0.894835 AATGGTGAAATTGACGGGCC 59.105 50.000 0.00 0.00 0.00 5.80
576 2299 2.741759 AAATGGTGAAATTGACGGGC 57.258 45.000 0.00 0.00 0.00 6.13
577 2300 4.461081 TCCTTAAATGGTGAAATTGACGGG 59.539 41.667 0.00 0.00 0.00 5.28
578 2301 5.637006 TCCTTAAATGGTGAAATTGACGG 57.363 39.130 0.00 0.00 0.00 4.79
579 2302 6.908825 TCTTCCTTAAATGGTGAAATTGACG 58.091 36.000 0.00 0.00 0.00 4.35
580 2303 7.315890 CCTCTTCCTTAAATGGTGAAATTGAC 58.684 38.462 0.00 0.00 0.00 3.18
581 2304 6.071391 GCCTCTTCCTTAAATGGTGAAATTGA 60.071 38.462 0.00 0.00 0.00 2.57
582 2305 6.071165 AGCCTCTTCCTTAAATGGTGAAATTG 60.071 38.462 0.00 0.00 0.00 2.32
583 2306 6.019108 AGCCTCTTCCTTAAATGGTGAAATT 58.981 36.000 0.00 0.00 0.00 1.82
584 2307 5.583932 AGCCTCTTCCTTAAATGGTGAAAT 58.416 37.500 0.00 0.00 0.00 2.17
585 2308 4.998051 AGCCTCTTCCTTAAATGGTGAAA 58.002 39.130 0.00 0.00 0.00 2.69
586 2309 4.657814 AGCCTCTTCCTTAAATGGTGAA 57.342 40.909 0.00 0.00 0.00 3.18
587 2310 4.335416 CAAGCCTCTTCCTTAAATGGTGA 58.665 43.478 0.00 0.00 0.00 4.02
588 2311 3.445096 CCAAGCCTCTTCCTTAAATGGTG 59.555 47.826 0.00 0.00 0.00 4.17
589 2312 3.701664 CCAAGCCTCTTCCTTAAATGGT 58.298 45.455 0.00 0.00 0.00 3.55
590 2313 2.428530 GCCAAGCCTCTTCCTTAAATGG 59.571 50.000 0.00 0.00 0.00 3.16
591 2314 2.428530 GGCCAAGCCTCTTCCTTAAATG 59.571 50.000 0.00 0.00 46.69 2.32
592 2315 2.739943 GGCCAAGCCTCTTCCTTAAAT 58.260 47.619 0.00 0.00 46.69 1.40
593 2316 2.215942 GGCCAAGCCTCTTCCTTAAA 57.784 50.000 0.00 0.00 46.69 1.52
594 2317 3.978876 GGCCAAGCCTCTTCCTTAA 57.021 52.632 0.00 0.00 46.69 1.85
625 2348 1.156736 CACACTAAAAGCCCGTCAGG 58.843 55.000 0.00 0.00 39.47 3.86
626 2349 2.163818 TCACACTAAAAGCCCGTCAG 57.836 50.000 0.00 0.00 0.00 3.51
627 2350 2.422597 CATCACACTAAAAGCCCGTCA 58.577 47.619 0.00 0.00 0.00 4.35
628 2351 1.737793 CCATCACACTAAAAGCCCGTC 59.262 52.381 0.00 0.00 0.00 4.79
629 2352 1.613255 CCCATCACACTAAAAGCCCGT 60.613 52.381 0.00 0.00 0.00 5.28
630 2353 1.094785 CCCATCACACTAAAAGCCCG 58.905 55.000 0.00 0.00 0.00 6.13
631 2354 0.817654 GCCCATCACACTAAAAGCCC 59.182 55.000 0.00 0.00 0.00 5.19
632 2355 0.817654 GGCCCATCACACTAAAAGCC 59.182 55.000 0.00 0.00 0.00 4.35
633 2356 0.451783 CGGCCCATCACACTAAAAGC 59.548 55.000 0.00 0.00 0.00 3.51
634 2357 1.094785 CCGGCCCATCACACTAAAAG 58.905 55.000 0.00 0.00 0.00 2.27
635 2358 0.402504 ACCGGCCCATCACACTAAAA 59.597 50.000 0.00 0.00 0.00 1.52
636 2359 0.035820 GACCGGCCCATCACACTAAA 60.036 55.000 0.00 0.00 0.00 1.85
637 2360 0.907704 AGACCGGCCCATCACACTAA 60.908 55.000 0.00 0.00 0.00 2.24
638 2361 0.907704 AAGACCGGCCCATCACACTA 60.908 55.000 0.00 0.00 0.00 2.74
639 2362 2.224159 AAGACCGGCCCATCACACT 61.224 57.895 0.00 0.00 0.00 3.55
640 2363 2.040544 CAAGACCGGCCCATCACAC 61.041 63.158 0.00 0.00 0.00 3.82
641 2364 2.350895 CAAGACCGGCCCATCACA 59.649 61.111 0.00 0.00 0.00 3.58
642 2365 2.438434 CCAAGACCGGCCCATCAC 60.438 66.667 0.00 0.00 0.00 3.06
643 2366 2.609299 TCCAAGACCGGCCCATCA 60.609 61.111 0.00 0.00 0.00 3.07
644 2367 2.124695 GTCCAAGACCGGCCCATC 60.125 66.667 0.00 0.00 0.00 3.51
645 2368 3.728373 GGTCCAAGACCGGCCCAT 61.728 66.667 0.00 0.00 43.14 4.00
653 2376 2.422479 GCCTAAAAATCGGGTCCAAGAC 59.578 50.000 0.00 0.00 0.00 3.01
654 2377 2.619590 GGCCTAAAAATCGGGTCCAAGA 60.620 50.000 0.00 0.00 0.00 3.02
655 2378 1.749063 GGCCTAAAAATCGGGTCCAAG 59.251 52.381 0.00 0.00 0.00 3.61
656 2379 1.356398 AGGCCTAAAAATCGGGTCCAA 59.644 47.619 1.29 0.00 0.00 3.53
657 2380 0.996583 AGGCCTAAAAATCGGGTCCA 59.003 50.000 1.29 0.00 0.00 4.02
658 2381 1.064979 TCAGGCCTAAAAATCGGGTCC 60.065 52.381 3.98 0.00 0.00 4.46
659 2382 2.014857 GTCAGGCCTAAAAATCGGGTC 58.985 52.381 3.98 0.00 0.00 4.46
660 2383 1.677820 CGTCAGGCCTAAAAATCGGGT 60.678 52.381 3.98 0.00 0.00 5.28
661 2384 1.014352 CGTCAGGCCTAAAAATCGGG 58.986 55.000 3.98 0.00 0.00 5.14
662 2385 1.014352 CCGTCAGGCCTAAAAATCGG 58.986 55.000 3.98 9.86 0.00 4.18
701 2424 0.531200 ACCAAAACCCGACGCAAAAA 59.469 45.000 0.00 0.00 0.00 1.94
702 2425 0.531200 AACCAAAACCCGACGCAAAA 59.469 45.000 0.00 0.00 0.00 2.44
703 2426 0.179134 CAACCAAAACCCGACGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
704 2427 1.433879 CAACCAAAACCCGACGCAA 59.566 52.632 0.00 0.00 0.00 4.85
705 2428 2.482333 CCAACCAAAACCCGACGCA 61.482 57.895 0.00 0.00 0.00 5.24
706 2429 2.333581 CCAACCAAAACCCGACGC 59.666 61.111 0.00 0.00 0.00 5.19
707 2430 2.333581 GCCAACCAAAACCCGACG 59.666 61.111 0.00 0.00 0.00 5.12
708 2431 2.732016 GGCCAACCAAAACCCGAC 59.268 61.111 0.00 0.00 35.26 4.79
709 2432 2.522193 GGGCCAACCAAAACCCGA 60.522 61.111 4.39 0.00 39.85 5.14
711 2434 3.621805 CCGGGCCAACCAAAACCC 61.622 66.667 4.39 0.00 40.22 4.11
712 2435 4.308458 GCCGGGCCAACCAAAACC 62.308 66.667 8.12 0.00 40.22 3.27
729 2452 1.418908 ATACCTGGCCATTCCTCGGG 61.419 60.000 5.51 4.26 35.26 5.14
730 2453 1.002087 GTATACCTGGCCATTCCTCGG 59.998 57.143 5.51 5.16 35.26 4.63
731 2454 1.971357 AGTATACCTGGCCATTCCTCG 59.029 52.381 5.51 0.00 35.26 4.63
732 2455 3.744660 CAAGTATACCTGGCCATTCCTC 58.255 50.000 5.51 0.00 35.26 3.71
733 2456 2.158608 GCAAGTATACCTGGCCATTCCT 60.159 50.000 5.51 0.00 33.59 3.36
734 2457 2.230660 GCAAGTATACCTGGCCATTCC 58.769 52.381 5.51 0.00 33.59 3.01
735 2458 2.930950 TGCAAGTATACCTGGCCATTC 58.069 47.619 5.51 0.00 39.64 2.67
736 2459 3.023832 GTTGCAAGTATACCTGGCCATT 58.976 45.455 5.51 0.00 39.64 3.16
737 2460 2.654863 GTTGCAAGTATACCTGGCCAT 58.345 47.619 5.51 0.00 39.64 4.40
738 2461 1.340600 GGTTGCAAGTATACCTGGCCA 60.341 52.381 4.71 4.71 39.64 5.36
739 2462 1.064685 AGGTTGCAAGTATACCTGGCC 60.065 52.381 6.22 0.00 39.64 5.36
740 2463 2.420058 AGGTTGCAAGTATACCTGGC 57.580 50.000 6.22 4.16 40.68 4.85
753 2476 2.785105 CGCGTACGTAGCAGGTTGC 61.785 63.158 17.90 0.00 37.93 4.17
754 2477 3.370131 CGCGTACGTAGCAGGTTG 58.630 61.111 17.90 0.00 34.19 3.77
799 2522 0.534873 TTGCGATCGGATTCCAGTCA 59.465 50.000 18.30 0.00 0.00 3.41
841 2565 3.228759 GGCCCCGGCGATGTAGTA 61.229 66.667 9.30 0.00 43.06 1.82
1208 2945 2.874780 CGTACTCGCCGAGTGCAC 60.875 66.667 29.72 20.05 43.62 4.57
1692 3432 1.380920 GGCGGTGTAGGGGTAGTCT 60.381 63.158 0.00 0.00 0.00 3.24
1941 3681 1.745489 GTCCCTGCCATTGTCGGTC 60.745 63.158 0.00 0.00 0.00 4.79
2101 3850 4.662961 GTTTGGCGGCTTGGGTGC 62.663 66.667 11.43 0.00 0.00 5.01
2335 4084 8.144862 AGGAATAGATTGGAGATTGGATAGTC 57.855 38.462 0.00 0.00 0.00 2.59
2402 4154 5.940192 ATATCAGCACAAACTCAACGAAA 57.060 34.783 0.00 0.00 0.00 3.46
2438 4198 4.688413 TGCTCTGTCAAACAAAACCAAAAC 59.312 37.500 0.00 0.00 0.00 2.43
2592 4369 9.850198 AGTCCTAGTACTATTGTAACTAAGGAG 57.150 37.037 2.33 0.00 0.00 3.69
2674 4451 8.383175 AGGAGTGTTTGATCTTCAATAAAGGTA 58.617 33.333 0.00 0.00 36.11 3.08
2692 4469 8.543774 AGTCATGACAATAATAGAAGGAGTGTT 58.456 33.333 27.02 0.00 0.00 3.32
2706 4483 8.415950 AACACCCAATTTAAGTCATGACAATA 57.584 30.769 27.02 16.40 0.00 1.90
2707 4484 6.916360 ACACCCAATTTAAGTCATGACAAT 57.084 33.333 27.02 17.39 0.00 2.71
2736 4613 9.822185 ATGGGCTTCTGTAATAAATTCATTTTC 57.178 29.630 0.00 0.00 0.00 2.29
2754 4631 4.574828 TGCTTTATACTTTCGATGGGCTTC 59.425 41.667 0.00 0.00 0.00 3.86
2758 4635 4.335315 TGCTTGCTTTATACTTTCGATGGG 59.665 41.667 0.00 0.00 0.00 4.00
2759 4636 5.484173 TGCTTGCTTTATACTTTCGATGG 57.516 39.130 0.00 0.00 0.00 3.51
2813 4690 1.005867 GGCGGTAGTGGTTGTTCGA 60.006 57.895 0.00 0.00 0.00 3.71
2827 4704 1.569493 CAACTTGTTCTGACGGCGG 59.431 57.895 13.24 0.00 0.00 6.13
2828 4705 1.082756 GCAACTTGTTCTGACGGCG 60.083 57.895 4.80 4.80 0.00 6.46
2865 4742 2.701951 TGACAAAGTTCGGTAAGGGAGT 59.298 45.455 0.00 0.00 0.00 3.85
2867 4744 3.842007 TTGACAAAGTTCGGTAAGGGA 57.158 42.857 0.00 0.00 0.00 4.20
2871 4748 5.353123 GGCTATCATTGACAAAGTTCGGTAA 59.647 40.000 0.00 0.00 0.00 2.85
2887 4764 4.521146 CACAAAGTCTTGGAGGCTATCAT 58.479 43.478 0.00 0.00 36.82 2.45
2891 4768 1.419762 TGCACAAAGTCTTGGAGGCTA 59.580 47.619 0.00 0.00 36.82 3.93
2896 4773 1.013596 CACGTGCACAAAGTCTTGGA 58.986 50.000 18.64 0.00 36.82 3.53
2897 4774 0.029300 CCACGTGCACAAAGTCTTGG 59.971 55.000 18.64 6.98 36.82 3.61
2898 4775 0.592247 GCCACGTGCACAAAGTCTTG 60.592 55.000 18.64 0.00 40.77 3.02
2899 4776 1.724582 GGCCACGTGCACAAAGTCTT 61.725 55.000 18.64 0.00 43.89 3.01
2919 4796 3.667360 ACAACGACTGTGGGGTATTTAC 58.333 45.455 0.00 0.00 36.69 2.01
2923 4800 1.418637 ACAACAACGACTGTGGGGTAT 59.581 47.619 0.00 0.00 38.67 2.73
2928 4805 2.477189 GGTTCAACAACAACGACTGTGG 60.477 50.000 0.00 0.00 38.67 4.17
2929 4806 2.160615 TGGTTCAACAACAACGACTGTG 59.839 45.455 0.00 0.00 38.67 3.66
2930 4807 2.428491 TGGTTCAACAACAACGACTGT 58.572 42.857 0.00 0.00 41.27 3.55
2951 4840 7.255451 GGTGTCAGGTACTTCAAATCATTTCAA 60.255 37.037 0.00 0.00 34.60 2.69
2956 4845 5.241403 TGGTGTCAGGTACTTCAAATCAT 57.759 39.130 0.00 0.00 34.60 2.45
2961 4850 7.001674 ACAATATTTGGTGTCAGGTACTTCAA 58.998 34.615 0.00 0.00 31.77 2.69
2976 4865 2.286950 CGTGGGCGATGACAATATTTGG 60.287 50.000 0.00 0.00 41.33 3.28
2998 4887 2.800544 CAAGGTTAGGGTTATCATCGCG 59.199 50.000 0.00 0.00 0.00 5.87
3000 4889 3.139077 GGCAAGGTTAGGGTTATCATCG 58.861 50.000 0.00 0.00 0.00 3.84
3003 4892 4.229582 AGATTGGCAAGGTTAGGGTTATCA 59.770 41.667 5.96 0.00 0.00 2.15
3006 4895 3.589735 TGAGATTGGCAAGGTTAGGGTTA 59.410 43.478 5.96 0.00 0.00 2.85
3018 4907 2.583024 TGACAATGGTGAGATTGGCA 57.417 45.000 0.00 0.00 46.96 4.92
3027 4916 2.547634 TCATCGTGTGTTGACAATGGTG 59.452 45.455 0.00 0.00 32.49 4.17
3028 4917 2.807967 CTCATCGTGTGTTGACAATGGT 59.192 45.455 0.00 0.00 32.49 3.55
3033 4922 2.479837 GGTTCTCATCGTGTGTTGACA 58.520 47.619 0.00 0.00 0.00 3.58
3035 4924 1.691976 AGGGTTCTCATCGTGTGTTGA 59.308 47.619 0.00 0.00 0.00 3.18
3037 4926 3.556423 GGTTAGGGTTCTCATCGTGTGTT 60.556 47.826 0.00 0.00 0.00 3.32
3040 4929 2.496470 GAGGTTAGGGTTCTCATCGTGT 59.504 50.000 0.00 0.00 0.00 4.49
3042 4931 1.749634 CGAGGTTAGGGTTCTCATCGT 59.250 52.381 0.00 0.00 0.00 3.73
3046 4935 0.252103 AGGCGAGGTTAGGGTTCTCA 60.252 55.000 0.00 0.00 0.00 3.27
3059 4948 1.219393 GTCTTCTTGGGGAGGCGAG 59.781 63.158 0.00 0.00 0.00 5.03
3073 4962 6.378710 TTCGAGATAGATTCATGTCGTCTT 57.621 37.500 12.05 0.00 41.16 3.01
3094 4983 6.218746 AGTTCATTCATTTGGACAAAGCTTC 58.781 36.000 0.00 0.00 33.32 3.86
3095 4984 6.165700 AGTTCATTCATTTGGACAAAGCTT 57.834 33.333 0.00 0.00 33.32 3.74
3100 4989 5.832595 TCCTTGAGTTCATTCATTTGGACAA 59.167 36.000 0.00 0.00 0.00 3.18
3109 4998 1.004745 GGGCCTCCTTGAGTTCATTCA 59.995 52.381 0.84 0.00 0.00 2.57
3111 5000 1.005215 CTGGGCCTCCTTGAGTTCATT 59.995 52.381 4.53 0.00 0.00 2.57
3120 5009 3.712218 GAGTTAGTATTCTGGGCCTCCTT 59.288 47.826 4.53 0.00 0.00 3.36
3130 5019 8.057536 ACACTTCATCTTCGAGTTAGTATTCT 57.942 34.615 0.00 0.00 0.00 2.40
3134 5023 6.978338 ACAACACTTCATCTTCGAGTTAGTA 58.022 36.000 0.00 0.00 0.00 1.82
3153 5042 2.809174 CTCGCGCGGATGACAACA 60.809 61.111 31.69 5.83 0.00 3.33
3168 5057 2.383527 CCTTGCAAGGTCGACGCTC 61.384 63.158 33.46 0.00 41.41 5.03
3173 5062 3.135994 GTTTTAGTCCTTGCAAGGTCGA 58.864 45.455 37.97 28.31 46.54 4.20
3175 5064 2.557056 GGGTTTTAGTCCTTGCAAGGTC 59.443 50.000 37.97 33.30 46.54 3.85
3197 5086 6.040166 CGGATCTGGCTAGTAGTTTAGGTTAA 59.960 42.308 0.00 0.00 0.00 2.01
3260 5149 2.353145 CGTTCCGACGGCCGATAG 60.353 66.667 35.90 21.35 45.32 2.08
3267 5156 5.928753 GGATTCACCTATCGTTCCGACGG 62.929 56.522 7.84 7.84 41.57 4.79
3268 5157 2.857489 GGATTCACCTATCGTTCCGACG 60.857 54.545 0.00 0.00 42.12 5.12
3269 5158 2.100252 TGGATTCACCTATCGTTCCGAC 59.900 50.000 0.00 0.00 37.95 4.79
3301 5190 0.251634 CACCCTTCAAGGCTCTCCTC 59.748 60.000 0.00 0.00 43.40 3.71
3303 5192 0.251634 CTCACCCTTCAAGGCTCTCC 59.748 60.000 0.00 0.00 32.73 3.71
3305 5194 1.439543 AACTCACCCTTCAAGGCTCT 58.560 50.000 0.00 0.00 32.73 4.09
3324 5214 3.096092 CCCAATTTAGCAGTTAGGGCAA 58.904 45.455 0.00 0.00 0.00 4.52
3328 5218 8.747538 AATAAGTACCCAATTTAGCAGTTAGG 57.252 34.615 0.00 0.00 0.00 2.69
3357 5247 9.280174 TCATGACTGATGACGTACATACTATTA 57.720 33.333 0.00 0.00 39.56 0.98
3359 5249 7.745620 TCATGACTGATGACGTACATACTAT 57.254 36.000 0.00 0.00 39.56 2.12
3360 5250 7.745620 ATCATGACTGATGACGTACATACTA 57.254 36.000 0.00 0.00 44.12 1.82
3361 5251 6.641169 ATCATGACTGATGACGTACATACT 57.359 37.500 0.00 0.00 44.12 2.12
3383 5273 8.622572 ACCAGGTTTTATATGAATTTTCCCAT 57.377 30.769 0.00 0.00 0.00 4.00
3391 5281 5.130350 CCCACGACCAGGTTTTATATGAAT 58.870 41.667 0.00 0.00 0.00 2.57
3392 5282 4.519213 CCCACGACCAGGTTTTATATGAA 58.481 43.478 0.00 0.00 0.00 2.57
3393 5283 3.683281 GCCCACGACCAGGTTTTATATGA 60.683 47.826 0.00 0.00 0.00 2.15
3394 5284 2.616842 GCCCACGACCAGGTTTTATATG 59.383 50.000 0.00 0.00 0.00 1.78
3395 5285 2.508300 AGCCCACGACCAGGTTTTATAT 59.492 45.455 0.00 0.00 0.00 0.86
3397 5287 0.696501 AGCCCACGACCAGGTTTTAT 59.303 50.000 0.00 0.00 0.00 1.40
3398 5288 0.475044 AAGCCCACGACCAGGTTTTA 59.525 50.000 0.00 0.00 0.00 1.52
3399 5289 0.822121 GAAGCCCACGACCAGGTTTT 60.822 55.000 0.00 0.00 0.00 2.43
3400 5290 1.228154 GAAGCCCACGACCAGGTTT 60.228 57.895 0.00 0.00 0.00 3.27
3401 5291 2.397413 CTGAAGCCCACGACCAGGTT 62.397 60.000 0.00 0.00 0.00 3.50
3402 5292 2.847234 TGAAGCCCACGACCAGGT 60.847 61.111 0.00 0.00 0.00 4.00
3403 5293 1.903877 ATCTGAAGCCCACGACCAGG 61.904 60.000 0.00 0.00 0.00 4.45
3404 5294 0.824109 TATCTGAAGCCCACGACCAG 59.176 55.000 0.00 0.00 0.00 4.00
3405 5295 1.496060 ATATCTGAAGCCCACGACCA 58.504 50.000 0.00 0.00 0.00 4.02
3406 5296 3.963428 ATATATCTGAAGCCCACGACC 57.037 47.619 0.00 0.00 0.00 4.79
3407 5297 5.416326 AGTCTATATATCTGAAGCCCACGAC 59.584 44.000 0.00 0.00 0.00 4.34
3408 5298 5.571285 AGTCTATATATCTGAAGCCCACGA 58.429 41.667 0.00 0.00 0.00 4.35
3409 5299 5.906113 AGTCTATATATCTGAAGCCCACG 57.094 43.478 0.00 0.00 0.00 4.94
3410 5300 8.356000 AGTTAGTCTATATATCTGAAGCCCAC 57.644 38.462 0.00 0.00 0.00 4.61
3411 5301 7.616150 GGAGTTAGTCTATATATCTGAAGCCCA 59.384 40.741 0.00 0.00 0.00 5.36
3412 5302 7.616150 TGGAGTTAGTCTATATATCTGAAGCCC 59.384 40.741 0.00 0.00 0.00 5.19
3413 5303 8.582657 TGGAGTTAGTCTATATATCTGAAGCC 57.417 38.462 0.00 0.00 0.00 4.35
3419 5309 8.898761 CGCTCAATGGAGTTAGTCTATATATCT 58.101 37.037 0.00 0.00 43.37 1.98
3420 5310 8.894731 TCGCTCAATGGAGTTAGTCTATATATC 58.105 37.037 0.00 0.00 43.37 1.63
3421 5311 8.679100 GTCGCTCAATGGAGTTAGTCTATATAT 58.321 37.037 0.00 0.00 43.37 0.86
3422 5312 7.664318 TGTCGCTCAATGGAGTTAGTCTATATA 59.336 37.037 0.00 0.00 43.37 0.86
3423 5313 6.490381 TGTCGCTCAATGGAGTTAGTCTATAT 59.510 38.462 0.00 0.00 43.37 0.86
3424 5314 5.826208 TGTCGCTCAATGGAGTTAGTCTATA 59.174 40.000 0.00 0.00 43.37 1.31
3425 5315 4.645136 TGTCGCTCAATGGAGTTAGTCTAT 59.355 41.667 0.00 0.00 43.37 1.98
3478 5368 3.197983 GGCCAGGATATATCGCCTAGTTT 59.802 47.826 17.99 0.00 36.65 2.66
3481 5371 1.689273 GGGCCAGGATATATCGCCTAG 59.311 57.143 22.04 5.99 39.64 3.02
3487 5377 2.279173 AGGGTTGGGCCAGGATATATC 58.721 52.381 6.23 3.96 39.65 1.63
3490 5380 1.217942 GAAAGGGTTGGGCCAGGATAT 59.782 52.381 6.23 0.00 39.65 1.63
3492 5382 1.388133 GAAAGGGTTGGGCCAGGAT 59.612 57.895 6.23 0.00 39.65 3.24
3496 5386 2.257541 TTTGGGAAAGGGTTGGGCCA 62.258 55.000 0.00 0.00 39.65 5.36
3498 5388 0.107831 GTTTTGGGAAAGGGTTGGGC 59.892 55.000 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.