Multiple sequence alignment - TraesCS7A01G263900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G263900 chr7A 100.000 5786 0 0 1 5786 262464972 262459187 0.000000e+00 10685.0
1 TraesCS7A01G263900 chr7B 94.929 5403 171 39 1 5364 222305365 222300027 0.000000e+00 8364.0
2 TraesCS7A01G263900 chr7B 86.831 243 9 11 5567 5786 222299419 222299177 3.460000e-62 250.0
3 TraesCS7A01G263900 chr7D 94.106 3682 127 26 1567 5203 246027111 246023475 0.000000e+00 5515.0
4 TraesCS7A01G263900 chr7D 96.186 1573 58 2 1 1572 246029646 246028075 0.000000e+00 2571.0
5 TraesCS7A01G263900 chr7D 89.183 453 15 10 5203 5625 246023345 246022897 8.530000e-148 534.0
6 TraesCS7A01G263900 chr7D 86.842 152 6 6 5636 5786 246022718 246022580 2.160000e-34 158.0
7 TraesCS7A01G263900 chr1B 89.888 89 7 2 5203 5291 556993852 556993766 4.740000e-21 113.0
8 TraesCS7A01G263900 chr6D 92.857 70 4 1 5201 5270 458975448 458975380 3.690000e-17 100.0
9 TraesCS7A01G263900 chr3D 89.744 78 8 0 5210 5287 589702148 589702071 3.690000e-17 100.0
10 TraesCS7A01G263900 chr2D 89.744 78 8 0 5210 5287 19538827 19538904 3.690000e-17 100.0
11 TraesCS7A01G263900 chr5D 85.556 90 10 2 5198 5286 521674715 521674802 2.220000e-14 91.6
12 TraesCS7A01G263900 chr2A 88.312 77 8 1 5210 5286 609736923 609736848 2.220000e-14 91.6
13 TraesCS7A01G263900 chr6B 83.158 95 13 3 5194 5287 696332759 696332667 3.720000e-12 84.2
14 TraesCS7A01G263900 chr6B 97.059 34 0 1 5634 5666 61645718 61645751 8.100000e-04 56.5
15 TraesCS7A01G263900 chr1D 100.000 29 0 0 5634 5662 162353221 162353249 3.000000e-03 54.7
16 TraesCS7A01G263900 chr1D 100.000 29 0 0 5634 5662 437361169 437361197 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G263900 chr7A 262459187 262464972 5785 True 10685.0 10685 100.00000 1 5786 1 chr7A.!!$R1 5785
1 TraesCS7A01G263900 chr7B 222299177 222305365 6188 True 4307.0 8364 90.88000 1 5786 2 chr7B.!!$R1 5785
2 TraesCS7A01G263900 chr7D 246022580 246029646 7066 True 2194.5 5515 91.57925 1 5786 4 chr7D.!!$R1 5785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 763 0.442310 CGACACGCACATACCCTTTG 59.558 55.000 0.00 0.0 0.0 2.77 F
1217 1219 0.108329 ATCGGTAACAAGGTGAGGCG 60.108 55.000 0.00 0.0 0.0 5.52 F
1895 2884 0.031994 ATTTGGCGGCACTTGTGAAC 59.968 50.000 12.92 0.0 0.0 3.18 F
2568 3559 1.065709 TCTCGTTAGTTGCCCCATTCC 60.066 52.381 0.00 0.0 0.0 3.01 F
2638 3654 1.403814 TAGATCTGCCCCTTCTGTCG 58.596 55.000 5.18 0.0 0.0 4.35 F
3631 4651 1.871039 CTTGACAAATTCGACCGTGGT 59.129 47.619 0.00 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1612 2600 0.250295 TTCTCCAGTTTCAGTGCCGG 60.250 55.000 0.00 0.0 0.00 6.13 R
2624 3640 0.742281 CACATCGACAGAAGGGGCAG 60.742 60.000 0.00 0.0 0.00 4.85 R
2823 3839 4.931661 ATGCATTCATCAAGGGATTGAC 57.068 40.909 0.00 0.0 33.23 3.18 R
4120 5155 3.102204 CCTCCAAATCAAAAGGCTCCAT 58.898 45.455 0.00 0.0 0.00 3.41 R
4439 5474 3.561725 ACAGCAGACAACTTAACTGAAGC 59.438 43.478 0.00 0.0 38.92 3.86 R
5506 7159 2.299993 TGCTCATTTGAGTCTAGGCG 57.700 50.000 9.21 0.0 43.85 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.896443 CTGAAGGAGAGCGGGGAC 59.104 66.667 0.00 0.00 0.00 4.46
62 63 3.573967 AGAAACCAATCATCACCACAACC 59.426 43.478 0.00 0.00 0.00 3.77
239 240 1.202927 CCAATGCGGGGGATCTGTAAT 60.203 52.381 0.00 0.00 0.00 1.89
526 527 2.261215 ACGGAAGTACGACCTGTCC 58.739 57.895 9.08 0.00 46.88 4.02
546 547 2.350895 CAGAATGCGGGTCCCACA 59.649 61.111 9.12 4.54 0.00 4.17
601 602 1.679305 AGATCGAGAGGTGGCGTGT 60.679 57.895 0.00 0.00 0.00 4.49
604 605 4.742201 CGAGAGGTGGCGTGTGGG 62.742 72.222 0.00 0.00 0.00 4.61
612 613 3.134127 GGCGTGTGGGAATGGAGC 61.134 66.667 0.00 0.00 0.00 4.70
617 618 1.852157 TGTGGGAATGGAGCAGGGT 60.852 57.895 0.00 0.00 0.00 4.34
627 628 3.252284 AGCAGGGTGGTGGTCCAG 61.252 66.667 0.00 0.00 45.24 3.86
705 706 1.338973 TGTCAGGGTCACGAAGTACAC 59.661 52.381 0.00 0.00 41.61 2.90
762 763 0.442310 CGACACGCACATACCCTTTG 59.558 55.000 0.00 0.00 0.00 2.77
868 869 2.600731 CCCACACCCACAACCTGT 59.399 61.111 0.00 0.00 0.00 4.00
1217 1219 0.108329 ATCGGTAACAAGGTGAGGCG 60.108 55.000 0.00 0.00 0.00 5.52
1219 1221 0.601841 CGGTAACAAGGTGAGGCGTT 60.602 55.000 0.00 0.00 0.00 4.84
1222 1224 1.193874 GTAACAAGGTGAGGCGTTTCG 59.806 52.381 0.00 0.00 0.00 3.46
1239 1241 2.808906 TCGACTCCTCTCTCATTCCA 57.191 50.000 0.00 0.00 0.00 3.53
1349 1368 1.535462 CCGAGGCTTTTGTTGATTCGT 59.465 47.619 0.00 0.00 0.00 3.85
1353 1372 2.031157 AGGCTTTTGTTGATTCGTTCCG 60.031 45.455 0.00 0.00 0.00 4.30
1371 1390 2.700371 TCCGATTGATCCAGCAGTATGT 59.300 45.455 0.00 0.00 39.31 2.29
1462 1481 4.392220 TGGATACACGGGGAGCAT 57.608 55.556 0.00 0.00 46.17 3.79
1544 1563 2.871453 TCTGGTGTGCAGTACAGTAGA 58.129 47.619 10.24 0.00 40.69 2.59
1565 1584 6.085555 AGATAACAGACTGAACGAGTTTGA 57.914 37.500 10.08 0.00 38.79 2.69
1735 2724 5.009911 TGTGCTGTTATGCTTGAAGTTTGAT 59.990 36.000 0.00 0.00 0.00 2.57
1862 2851 4.451096 TCTTCATTTCGGTCAACTAGTTGC 59.549 41.667 27.49 21.55 40.24 4.17
1895 2884 0.031994 ATTTGGCGGCACTTGTGAAC 59.968 50.000 12.92 0.00 0.00 3.18
1947 2936 8.764558 TGGTTATCTGTATAGTTATGGTGTTGT 58.235 33.333 0.00 0.00 0.00 3.32
2039 3029 4.681744 TCAATTTGTTTTCTGACTGGCAC 58.318 39.130 0.00 0.00 0.00 5.01
2124 3114 8.034804 CCCATTTTACAGGAGAAAATAAAGGTG 58.965 37.037 0.00 0.00 35.29 4.00
2568 3559 1.065709 TCTCGTTAGTTGCCCCATTCC 60.066 52.381 0.00 0.00 0.00 3.01
2624 3640 8.723942 TTCCTCACTTGAATAGCTTTTAGATC 57.276 34.615 0.00 0.00 0.00 2.75
2638 3654 1.403814 TAGATCTGCCCCTTCTGTCG 58.596 55.000 5.18 0.00 0.00 4.35
2667 3683 5.507985 GCACTTGTTTGCAATTCCTTCTACT 60.508 40.000 0.00 0.00 42.49 2.57
2791 3807 3.621268 GCACTGTTAACTGTCACAACTGA 59.379 43.478 14.52 0.00 0.00 3.41
2823 3839 2.247311 GCATACTGCACACCTTTTCG 57.753 50.000 0.00 0.00 44.26 3.46
2874 3890 6.769512 TGTTGCTCTTTATGAGTAAAGTCCT 58.230 36.000 7.55 0.00 46.17 3.85
2882 3898 8.690884 TCTTTATGAGTAAAGTCCTCTGAGATG 58.309 37.037 6.17 0.00 44.58 2.90
2883 3899 7.962995 TTATGAGTAAAGTCCTCTGAGATGT 57.037 36.000 6.17 0.00 0.00 3.06
2884 3900 9.475620 TTTATGAGTAAAGTCCTCTGAGATGTA 57.524 33.333 6.17 0.00 0.00 2.29
3094 4113 8.233190 GCCTTGCTGATTAATCTGTATATGAAC 58.767 37.037 19.75 5.25 0.00 3.18
3273 4292 5.112129 ACTTGTGTTTGTCTCCTTAAGGT 57.888 39.130 21.04 0.00 36.34 3.50
3631 4651 1.871039 CTTGACAAATTCGACCGTGGT 59.129 47.619 0.00 0.00 0.00 4.16
3749 4769 3.951037 TGTAATGCACTGTCCTGTTTGTT 59.049 39.130 0.00 0.00 0.00 2.83
3788 4808 2.428890 TGGGAGTTGTCGTTTTGCATTT 59.571 40.909 0.00 0.00 0.00 2.32
3799 4819 6.920210 TGTCGTTTTGCATTTCATGTGAATTA 59.080 30.769 0.00 0.00 33.54 1.40
3803 4823 7.465989 GTTTTGCATTTCATGTGAATTATGGG 58.534 34.615 8.63 0.00 33.54 4.00
3838 4858 6.939730 TGTTCTTGCAATAGTTTCACTCCATA 59.060 34.615 0.00 0.00 0.00 2.74
4163 5198 7.014326 GGAGGATTGGTAACCATAGGAATTTTC 59.986 40.741 0.00 0.00 31.53 2.29
4165 5200 6.609616 GGATTGGTAACCATAGGAATTTTCCA 59.390 38.462 11.75 0.00 40.87 3.53
4169 5204 9.362151 TTGGTAACCATAGGAATTTTCCATATC 57.638 33.333 11.75 0.00 40.87 1.63
4184 5219 8.450578 TTTTCCATATCGACTATTTTGCATCT 57.549 30.769 0.00 0.00 0.00 2.90
4273 5308 4.908601 TCATGTTCTTATCCTGTGGTGT 57.091 40.909 0.00 0.00 0.00 4.16
4277 5312 3.838317 TGTTCTTATCCTGTGGTGTAGCT 59.162 43.478 0.00 0.00 0.00 3.32
4284 5319 2.146342 CCTGTGGTGTAGCTGAACAAG 58.854 52.381 0.00 0.00 0.00 3.16
4390 5425 4.148128 AGCCATGTTAGGACAAGAGATG 57.852 45.455 0.00 0.00 39.66 2.90
4439 5474 8.507249 GGTGCTATCCTACATGCTTTAATTAAG 58.493 37.037 0.00 0.00 36.90 1.85
4614 5649 0.930310 CAATCCGCGTGATGTACCTG 59.070 55.000 4.92 0.00 32.68 4.00
4933 5968 1.737793 GTGTTCTTGGGGCGTAATCAG 59.262 52.381 0.00 0.00 0.00 2.90
4978 6013 5.048294 GCCCTCAAATTCGAAGTTTTCCTTA 60.048 40.000 8.33 0.00 32.03 2.69
5040 6075 1.346068 ACTGTTGAGAAGACCCTCTGC 59.654 52.381 0.00 0.00 34.38 4.26
5132 6171 6.866480 TCTCAGCAATCAGTTTCTTTTGTTT 58.134 32.000 0.00 0.00 0.00 2.83
5133 6172 7.322664 TCTCAGCAATCAGTTTCTTTTGTTTT 58.677 30.769 0.00 0.00 0.00 2.43
5208 6377 9.539825 CATTATCTCATTAGCATGTATACCTCC 57.460 37.037 0.00 0.00 0.00 4.30
5340 6536 4.454161 TCATGTTTGTTTCTACACGATGGG 59.546 41.667 0.00 0.00 32.98 4.00
5366 7019 9.282569 GCATTTCTAGAATTGGTGATATCTCTT 57.717 33.333 22.49 0.00 0.00 2.85
5369 7022 8.789767 TTCTAGAATTGGTGATATCTCTTCCT 57.210 34.615 0.00 0.00 0.00 3.36
5464 7117 5.048083 TCACTCCACTTTTATTCATGTTGCC 60.048 40.000 0.00 0.00 0.00 4.52
5467 7120 3.928375 CCACTTTTATTCATGTTGCCTGC 59.072 43.478 0.00 0.00 0.00 4.85
5468 7121 4.322198 CCACTTTTATTCATGTTGCCTGCT 60.322 41.667 0.00 0.00 0.00 4.24
5506 7159 4.068599 AGTTGTTTCTAGCTTTGCCTCTC 58.931 43.478 0.00 0.00 0.00 3.20
5525 7178 1.824852 TCGCCTAGACTCAAATGAGCA 59.175 47.619 10.28 0.00 45.79 4.26
5527 7180 2.606725 CGCCTAGACTCAAATGAGCAAG 59.393 50.000 10.28 5.53 45.79 4.01
5529 7182 3.620966 GCCTAGACTCAAATGAGCAAGGT 60.621 47.826 19.33 1.51 45.79 3.50
5538 7191 0.035630 ATGAGCAAGGTCAGGACAGC 60.036 55.000 8.04 2.64 0.00 4.40
5625 7285 8.180165 TCATACTCCTCCTGATCCATATTACTT 58.820 37.037 0.00 0.00 0.00 2.24
5626 7286 6.678568 ACTCCTCCTGATCCATATTACTTG 57.321 41.667 0.00 0.00 0.00 3.16
5631 7448 7.056635 CCTCCTGATCCATATTACTTGTTGTT 58.943 38.462 0.00 0.00 0.00 2.83
5772 7607 7.491696 GCACTGTTTACTATCGTTTCTTCCTAT 59.508 37.037 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.549458 GTTGTGGTGATGATTGGTTTCTG 58.451 43.478 0.00 0.00 0.00 3.02
62 63 3.691609 GTCAGAGTTTAGGATTGGCTTGG 59.308 47.826 0.00 0.00 0.00 3.61
239 240 3.587498 TCTTCTGGACTCTTCCTGGAAA 58.413 45.455 10.86 1.31 43.31 3.13
302 303 0.249489 CATCCTTCTTCGCCCTACCG 60.249 60.000 0.00 0.00 0.00 4.02
335 336 1.136110 CTCTTCTTCTTCCTCGCCTCC 59.864 57.143 0.00 0.00 0.00 4.30
546 547 4.538490 TGACAGGTGGTCCCTTATTTACAT 59.462 41.667 0.00 0.00 42.73 2.29
601 602 2.615465 CCACCCTGCTCCATTCCCA 61.615 63.158 0.00 0.00 0.00 4.37
604 605 1.379044 CCACCACCCTGCTCCATTC 60.379 63.158 0.00 0.00 0.00 2.67
612 613 3.557903 CTGCTGGACCACCACCCTG 62.558 68.421 0.00 0.00 41.77 4.45
617 618 2.055689 CTGTTCCTGCTGGACCACCA 62.056 60.000 12.53 6.13 43.06 4.17
627 628 1.197036 GGAAGTTAACGCTGTTCCTGC 59.803 52.381 14.20 0.00 36.34 4.85
631 632 4.806342 TTTCAGGAAGTTAACGCTGTTC 57.194 40.909 0.00 0.00 0.00 3.18
705 706 1.431488 CGCGTCATCCACCTTCATGG 61.431 60.000 0.00 0.00 41.57 3.66
1217 1219 3.193691 TGGAATGAGAGAGGAGTCGAAAC 59.806 47.826 0.00 0.00 0.00 2.78
1219 1221 2.755655 GTGGAATGAGAGAGGAGTCGAA 59.244 50.000 0.00 0.00 0.00 3.71
1222 1224 3.096092 ACTGTGGAATGAGAGAGGAGTC 58.904 50.000 0.00 0.00 0.00 3.36
1349 1368 3.134623 ACATACTGCTGGATCAATCGGAA 59.865 43.478 0.00 0.00 0.00 4.30
1353 1372 5.530171 ACATTCACATACTGCTGGATCAATC 59.470 40.000 0.00 0.00 0.00 2.67
1371 1390 4.787551 ACAGTAACCAGAACCAACATTCA 58.212 39.130 0.00 0.00 0.00 2.57
1462 1481 7.775093 CCCTTGATCCTATAACAGAACATGAAA 59.225 37.037 0.00 0.00 0.00 2.69
1544 1563 5.869888 GGATCAAACTCGTTCAGTCTGTTAT 59.130 40.000 0.00 0.00 32.30 1.89
1565 1584 4.574674 TTCCTACATTGACAAGCTGGAT 57.425 40.909 0.00 0.00 0.00 3.41
1612 2600 0.250295 TTCTCCAGTTTCAGTGCCGG 60.250 55.000 0.00 0.00 0.00 6.13
1656 2644 9.996554 TCAAACTCTGAGATAAATTTCACTACA 57.003 29.630 12.44 0.00 0.00 2.74
1677 2665 3.462021 CCTGGCATAGACTAGCTCAAAC 58.538 50.000 0.00 0.00 0.00 2.93
1678 2666 2.435805 CCCTGGCATAGACTAGCTCAAA 59.564 50.000 0.00 0.00 0.00 2.69
1735 2724 6.513884 GCTTTCTGTCATGTCATTCTTGAACA 60.514 38.462 0.00 0.00 32.48 3.18
1742 2731 4.978083 ATGGCTTTCTGTCATGTCATTC 57.022 40.909 0.00 0.00 39.89 2.67
1862 2851 3.549423 CCGCCAAATGCACTTGAGATATG 60.549 47.826 9.94 0.00 41.33 1.78
1885 2874 4.789012 ATAGCATTTGGGTTCACAAGTG 57.211 40.909 6.04 6.04 39.98 3.16
1895 2884 6.431198 ACAGTACGTTAAATAGCATTTGGG 57.569 37.500 0.00 0.00 0.00 4.12
1975 2964 1.933247 TGGAAGGCAAAACAAAAGCG 58.067 45.000 0.00 0.00 0.00 4.68
2039 3029 2.751806 GGTTCCTGCAAGATTCAGAAGG 59.248 50.000 0.00 0.00 34.07 3.46
2124 3114 2.851824 CAGAACAAGCAAACGAACAACC 59.148 45.455 0.00 0.00 0.00 3.77
2373 3364 3.640967 TCCTAGCAGCAAACCAAACAATT 59.359 39.130 0.00 0.00 0.00 2.32
2552 3543 2.406596 TACGGAATGGGGCAACTAAC 57.593 50.000 0.00 0.00 0.00 2.34
2568 3559 3.125316 GGAGTGGAGCAAAAAGTGATACG 59.875 47.826 0.00 0.00 0.00 3.06
2624 3640 0.742281 CACATCGACAGAAGGGGCAG 60.742 60.000 0.00 0.00 0.00 4.85
2667 3683 2.978156 AGCAAATTCCCCAGAGACAA 57.022 45.000 0.00 0.00 0.00 3.18
2730 3746 8.177013 GGCAGGCATTTACTTTATTTTTCATTG 58.823 33.333 0.00 0.00 0.00 2.82
2823 3839 4.931661 ATGCATTCATCAAGGGATTGAC 57.068 40.909 0.00 0.00 33.23 3.18
3252 4271 8.842358 TTATACCTTAAGGAGACAAACACAAG 57.158 34.615 28.52 0.00 38.94 3.16
3284 4303 8.379902 CAACAACACTTATTTCCTTTTGTTCAC 58.620 33.333 0.00 0.00 34.35 3.18
3484 4503 9.737427 AGTGTTATCATAGTCAAGAAAGATACG 57.263 33.333 0.00 0.00 0.00 3.06
3631 4651 6.524101 ACAAAACAAAGAAGCTAACCTGAA 57.476 33.333 0.00 0.00 0.00 3.02
3749 4769 7.016153 ACTCCCAATCAAATAGACTTACACA 57.984 36.000 0.00 0.00 0.00 3.72
3788 4808 7.283807 CACTCTTGATTCCCATAATTCACATGA 59.716 37.037 0.00 0.00 0.00 3.07
3997 5029 8.079203 GTCCTACTCACATGATATCTAGTGTTG 58.921 40.741 20.17 17.15 33.84 3.33
4051 5083 3.833070 GAGGCCTATCCCTCGAAGAATAA 59.167 47.826 4.42 0.00 41.79 1.40
4120 5155 3.102204 CCTCCAAATCAAAAGGCTCCAT 58.898 45.455 0.00 0.00 0.00 3.41
4163 5198 8.539770 AACTAGATGCAAAATAGTCGATATGG 57.460 34.615 0.00 0.00 0.00 2.74
4165 5200 8.367911 TGGAACTAGATGCAAAATAGTCGATAT 58.632 33.333 0.00 0.00 0.00 1.63
4169 5204 6.662414 TTGGAACTAGATGCAAAATAGTCG 57.338 37.500 4.43 0.00 0.00 4.18
4184 5219 8.084985 ACAAAGGGAAAATTCTTTTGGAACTA 57.915 30.769 18.57 0.00 36.73 2.24
4273 5308 5.236478 GCACAAAGTAGAACTTGTTCAGCTA 59.764 40.000 14.80 0.00 38.66 3.32
4277 5312 4.265893 TGGCACAAAGTAGAACTTGTTCA 58.734 39.130 14.80 0.15 38.66 3.18
4390 5425 5.451908 CACACAAACACAGGTGAATACATC 58.548 41.667 6.40 0.00 38.38 3.06
4439 5474 3.561725 ACAGCAGACAACTTAACTGAAGC 59.438 43.478 0.00 0.00 38.92 3.86
4933 5968 3.669023 GCAGTGACAAGTAAAGCATGCTC 60.669 47.826 22.93 8.91 0.00 4.26
4978 6013 5.862323 CGTTGTGCTAGAGTACACTTACAAT 59.138 40.000 15.09 0.00 40.26 2.71
5040 6075 5.520632 AGAACCACGATTAGTCACGATATG 58.479 41.667 0.00 0.00 0.00 1.78
5132 6171 6.267471 AGCATGTCCCAATTCAAAGAGTTAAA 59.733 34.615 0.00 0.00 0.00 1.52
5133 6172 5.774690 AGCATGTCCCAATTCAAAGAGTTAA 59.225 36.000 0.00 0.00 0.00 2.01
5140 6179 2.827322 CTGGAGCATGTCCCAATTCAAA 59.173 45.455 10.60 0.00 46.31 2.69
5274 6460 4.972568 TGCCTTCCTATATACACCCTCAAA 59.027 41.667 0.00 0.00 0.00 2.69
5275 6461 4.562767 TGCCTTCCTATATACACCCTCAA 58.437 43.478 0.00 0.00 0.00 3.02
5276 6462 4.207698 TGCCTTCCTATATACACCCTCA 57.792 45.455 0.00 0.00 0.00 3.86
5340 6536 8.845413 AGAGATATCACCAATTCTAGAAATGC 57.155 34.615 14.09 0.50 0.00 3.56
5366 7019 8.591114 AAAGCTAGTAATTCTGTAGTACAGGA 57.409 34.615 26.30 20.67 45.94 3.86
5369 7022 9.803315 CATGAAAGCTAGTAATTCTGTAGTACA 57.197 33.333 2.36 2.36 29.82 2.90
5382 7035 4.396166 GCAAGAAAGGCATGAAAGCTAGTA 59.604 41.667 0.00 0.00 34.17 1.82
5383 7036 3.192212 GCAAGAAAGGCATGAAAGCTAGT 59.808 43.478 0.00 0.00 34.17 2.57
5384 7037 3.442977 AGCAAGAAAGGCATGAAAGCTAG 59.557 43.478 0.00 0.00 34.17 3.42
5464 7117 8.816640 ACAACTATGGAAAACATAAAAAGCAG 57.183 30.769 0.00 0.00 41.33 4.24
5506 7159 2.299993 TGCTCATTTGAGTCTAGGCG 57.700 50.000 9.21 0.00 43.85 5.52
5538 7191 4.275810 ACCATTCCAGTTCCATCATTCAG 58.724 43.478 0.00 0.00 0.00 3.02
5608 7264 7.629157 TGAACAACAAGTAATATGGATCAGGA 58.371 34.615 0.00 0.00 0.00 3.86
5609 7265 7.770433 TCTGAACAACAAGTAATATGGATCAGG 59.230 37.037 0.00 0.00 34.43 3.86
5625 7285 6.942005 ACTCAAATGGATGTATCTGAACAACA 59.058 34.615 0.00 0.00 32.02 3.33
5626 7286 7.119699 TCACTCAAATGGATGTATCTGAACAAC 59.880 37.037 0.00 0.00 32.02 3.32
5631 7448 6.298441 TGTCACTCAAATGGATGTATCTGA 57.702 37.500 0.00 0.00 0.00 3.27
5681 7510 8.537016 AGCTTATATATATACCGGAAGCAAACA 58.463 33.333 21.13 0.00 33.57 2.83
5702 7531 3.559242 GCCAAAACATGCAACAAAGCTTA 59.441 39.130 0.00 0.00 34.99 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.