AutoCloner

Multiple sequence alignment - TraesCS7A01G263600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G263600	chr7A	100.000	4037	0	0	1	4037	261585573	261589609	0.000000e+00	7456
1	TraesCS7A01G263600	chr7A	91.112	3814	303	23	245	4026	148788360	148784551	0.000000e+00	5132
2	TraesCS7A01G263600	chr7A	88.544	2226	197	41	1	2188	194773675	194775880	0.000000e+00	2645
3	TraesCS7A01G263600	chr1A	90.224	3713	344	13	333	4037	56774300	56770599	0.000000e+00	4828
4	TraesCS7A01G263600	chr1A	90.116	3713	347	18	333	4034	348038753	348042456	0.000000e+00	4806
5	TraesCS7A01G263600	chr4A	90.198	3693	333	26	351	4026	495745189	495748869	0.000000e+00	4787
6	TraesCS7A01G263600	chr4A	86.547	3107	356	49	278	3352	321837652	321834576	0.000000e+00	3365
7	TraesCS7A01G263600	chr4A	86.486	2294	245	45	252	2499	529006859	529009133	0.000000e+00	2459
8	TraesCS7A01G263600	chr4A	86.382	1968	216	40	252	2186	6073904	6075852	0.000000e+00	2102
9	TraesCS7A01G263600	chr4A	89.655	203	15	5	1	200	58437593	58437792	1.860000e-63	254
10	TraesCS7A01G263600	chr4A	89.500	200	17	3	1	197	58465277	58465475	2.410000e-62	250
11	TraesCS7A01G263600	chr3A	87.981	4077	408	61	1	4026	559240545	559236500	0.000000e+00	4739
12	TraesCS7A01G263600	chr3A	89.605	3694	356	24	352	4026	559309407	559305723	0.000000e+00	4669
13	TraesCS7A01G263600	chr3A	90.448	2209	172	22	1	2187	528873864	528876055	0.000000e+00	2874
14	TraesCS7A01G263600	chr3A	81.582	2237	295	99	4	2186	90557118	90554945	0.000000e+00	1740
15	TraesCS7A01G263600	chr3A	91.542	201	16	1	1	200	421947712	421947912	3.970000e-70	276
16	TraesCS7A01G263600	chr5A	89.811	3700	342	31	346	4030	250678777	250682456	0.000000e+00	4711
17	TraesCS7A01G263600	chr5A	90.442	2197	158	21	1	2180	195597196	195599357	0.000000e+00	2846
18	TraesCS7A01G263600	chr5A	89.055	201	18	3	2	200	186279342	186279144	3.120000e-61	246
19	TraesCS7A01G263600	chr5A	88.614	202	19	4	1	200	195592703	195592902	4.030000e-60	243
20	TraesCS7A01G263600	chr6A	89.593	3709	351	26	333	4026	320829944	320833632	0.000000e+00	4678
21	TraesCS7A01G263600	chr6A	90.686	2201	151	28	3	2186	61117186	61119349	0.000000e+00	2880
22	TraesCS7A01G263600	chr2D	89.454	3717	361	27	327	4026	32713293	32709591	0.000000e+00	4663
23	TraesCS7A01G263600	chr2A	86.017	1795	197	51	244	2011	226953729	226955496	0.000000e+00	1875

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G263600	chr7A	261585573	261589609	4036	False	7456	7456	100.000	1	4037	1	chr7A.!!$F2	4036
1	TraesCS7A01G263600	chr7A	148784551	148788360	3809	True	5132	5132	91.112	245	4026	1	chr7A.!!$R1	3781
2	TraesCS7A01G263600	chr7A	194773675	194775880	2205	False	2645	2645	88.544	1	2188	1	chr7A.!!$F1	2187
3	TraesCS7A01G263600	chr1A	56770599	56774300	3701	True	4828	4828	90.224	333	4037	1	chr1A.!!$R1	3704
4	TraesCS7A01G263600	chr1A	348038753	348042456	3703	False	4806	4806	90.116	333	4034	1	chr1A.!!$F1	3701
5	TraesCS7A01G263600	chr4A	495745189	495748869	3680	False	4787	4787	90.198	351	4026	1	chr4A.!!$F4	3675
6	TraesCS7A01G263600	chr4A	321834576	321837652	3076	True	3365	3365	86.547	278	3352	1	chr4A.!!$R1	3074
7	TraesCS7A01G263600	chr4A	529006859	529009133	2274	False	2459	2459	86.486	252	2499	1	chr4A.!!$F5	2247
8	TraesCS7A01G263600	chr4A	6073904	6075852	1948	False	2102	2102	86.382	252	2186	1	chr4A.!!$F1	1934
9	TraesCS7A01G263600	chr3A	559236500	559240545	4045	True	4739	4739	87.981	1	4026	1	chr3A.!!$R2	4025
10	TraesCS7A01G263600	chr3A	559305723	559309407	3684	True	4669	4669	89.605	352	4026	1	chr3A.!!$R3	3674
11	TraesCS7A01G263600	chr3A	528873864	528876055	2191	False	2874	2874	90.448	1	2187	1	chr3A.!!$F2	2186
12	TraesCS7A01G263600	chr3A	90554945	90557118	2173	True	1740	1740	81.582	4	2186	1	chr3A.!!$R1	2182
13	TraesCS7A01G263600	chr5A	250678777	250682456	3679	False	4711	4711	89.811	346	4030	1	chr5A.!!$F3	3684
14	TraesCS7A01G263600	chr5A	195597196	195599357	2161	False	2846	2846	90.442	1	2180	1	chr5A.!!$F2	2179
15	TraesCS7A01G263600	chr6A	320829944	320833632	3688	False	4678	4678	89.593	333	4026	1	chr6A.!!$F2	3693
16	TraesCS7A01G263600	chr6A	61117186	61119349	2163	False	2880	2880	90.686	3	2186	1	chr6A.!!$F1	2183
17	TraesCS7A01G263600	chr2D	32709591	32713293	3702	True	4663	4663	89.454	327	4026	1	chr2D.!!$R1	3699
18	TraesCS7A01G263600	chr2A	226953729	226955496	1767	False	1875	1875	86.017	244	2011	1	chr2A.!!$F1	1767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
428	590	1.355796	CGTTCATCCGTTAGCCGCAA	61.356	55.000	0.00	34.38	4.85	F
572	743	1.531149	CGAATCAGGTGAAACAAGCGT	59.469	47.619	0.00	39.98	5.07	F
1258	1480	1.081376	GATCATCCTACGGTCCGCG	60.081	63.158	12.28	0.00	6.46	F
2483	2740	1.198713	AGGAGATTCACGCCAGTCAT	58.801	50.000	0.00	40.96	3.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1258	1480	0.106967	GATCCCTTTGAGCCTGGGTC	60.107	60.000	18.72	18.72	41.58	4.46	R
2547	2805	1.544246	CCGATGCGTCCTATGGTGATA	59.456	52.381	0.00	0.00	0.00	2.15	R
2689	2947	0.179121	TGGCGACGTATGTGATGGTC	60.179	55.000	0.00	0.00	0.00	4.02	R
3649	3932	0.615331	GCTCCAGTTGAGACATGGGA	59.385	55.000	0.00	0.00	44.42	4.37	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
62	63	7.439204	TTCTTTTATTTGTTTTTCCACGTCG	57.561	32.000	0.00	0.00	0.00	5.12
64	65	4.897025	TTATTTGTTTTTCCACGTCGGT	57.103	36.364	0.00	0.00	35.57	4.69
193	245	2.185310	CTGCCCTGAAACCCTAGCGT	62.185	60.000	0.00	0.00	0.00	5.07
230	292	4.980805	GTCGTCACCTTGCCGCCA	62.981	66.667	0.00	0.00	0.00	5.69
394	556	2.728132	GACATTCGTCCGTGCGTTA	58.272	52.632	0.00	0.00	36.02	3.18
402	564	2.725723	TCGTCCGTGCGTTAGTTTTAAG	59.274	45.455	0.00	0.00	0.00	1.85
428	590	1.355796	CGTTCATCCGTTAGCCGCAA	61.356	55.000	0.00	0.00	34.38	4.85
474	638	5.676331	GCCTGTTCGTCAGTTTTCTTTTTCT	60.676	40.000	8.83	0.00	42.19	2.52
521	692	1.795286	CGCGATTTCTGCCCTAATCTC	59.205	52.381	0.00	0.00	0.00	2.75
572	743	1.531149	CGAATCAGGTGAAACAAGCGT	59.469	47.619	0.00	0.00	39.98	5.07
587	758	4.190001	ACAAGCGTCTAGATCTTCGTCTA	58.810	43.478	0.00	0.00	0.00	2.59
635	806	7.027778	ACTTGAACAAGATTTTGGTACTGTC	57.972	36.000	19.35	0.00	40.79	3.51
712	883	5.769367	AGTTTCTTTGCTCCGTTTAATTCC	58.231	37.500	0.00	0.00	0.00	3.01
788	960	2.552599	TGAGTTTTACCCGTGCATCA	57.447	45.000	0.00	0.00	0.00	3.07
823	996	8.798153	GTGCTTATGTATGCTATTGTTTGTTTC	58.202	33.333	0.00	0.00	0.00	2.78
931	1120	7.480437	TCATACCCCTTTATTACCCAGTTTTT	58.520	34.615	0.00	0.00	0.00	1.94
956	1145	3.181434	TGCCTTAGTTTCAACCCTCACAT	60.181	43.478	0.00	0.00	0.00	3.21
957	1147	3.191371	GCCTTAGTTTCAACCCTCACATG	59.809	47.826	0.00	0.00	0.00	3.21
960	1150	5.301805	CCTTAGTTTCAACCCTCACATGTTT	59.698	40.000	0.00	0.00	0.00	2.83
1101	1300	2.826428	CTCATAGACGTGGATTGGGTG	58.174	52.381	0.00	0.00	0.00	4.61
1258	1480	1.081376	GATCATCCTACGGTCCGCG	60.081	63.158	12.28	0.00	0.00	6.46
1313	1535	2.755650	CTAGAAACTTCCGTGTGCAGT	58.244	47.619	0.00	0.00	0.00	4.40
1622	1850	9.213799	GTTCTTGAATTATCCTATGGATCTCAC	57.786	37.037	1.98	0.00	42.11	3.51
1826	2072	9.874215	CATGTAGTGATAGCATTTATCTGTTTG	57.126	33.333	0.00	0.00	0.00	2.93
2044	2295	9.463443	CCTTAAGCCATATTTGTTGTAATAAGC	57.537	33.333	0.00	0.00	0.00	3.09
2127	2381	5.152623	AGTACTGTGTGTGTCAGCATTAT	57.847	39.130	0.00	0.00	36.50	1.28
2136	2390	3.384467	TGTGTCAGCATTATCGATCCAGA	59.616	43.478	0.00	0.00	0.00	3.86
2150	2406	6.471233	TCGATCCAGAGATGACACTAAAAT	57.529	37.500	0.00	0.00	30.90	1.82
2224	2480	1.893137	TGCTGAATGTAGGACACGACT	59.107	47.619	0.00	0.00	0.00	4.18
2241	2498	5.593095	ACACGACTACTAAGATGAGCCATAA	59.407	40.000	0.00	0.00	0.00	1.90
2340	2597	2.966732	GCCGGATGAAGACACCCCA	61.967	63.158	5.05	0.00	0.00	4.96
2483	2740	1.198713	AGGAGATTCACGCCAGTCAT	58.801	50.000	0.00	0.00	40.96	3.06
2643	2901	4.081807	CGAGATGAGCAATGGGAGATGATA	60.082	45.833	0.00	0.00	0.00	2.15
2648	2906	3.752222	GAGCAATGGGAGATGATAAGCAG	59.248	47.826	0.00	0.00	0.00	4.24
2649	2907	3.137913	AGCAATGGGAGATGATAAGCAGT	59.862	43.478	0.00	0.00	0.00	4.40
2689	2947	2.877168	GCAGCATTCATCCAGGAGTTAG	59.123	50.000	0.00	0.00	0.00	2.34
2759	3017	2.787473	TTGAAGAAGGCGATGACCAT	57.213	45.000	0.00	0.00	0.00	3.55
2760	3018	3.904800	TTGAAGAAGGCGATGACCATA	57.095	42.857	0.00	0.00	0.00	2.74
2781	3039	6.211184	CCATAATCACAGAGCTAGAAGAGGAT	59.789	42.308	0.00	0.00	0.00	3.24
2993	3251	6.319911	AGTGATGATGACTATGAAGACGAAGA	59.680	38.462	0.00	0.00	0.00	2.87
2998	3256	5.914898	TGACTATGAAGACGAAGATGGAA	57.085	39.130	0.00	0.00	0.00	3.53
3007	3265	1.134788	ACGAAGATGGAACGGACATCC	60.135	52.381	11.14	2.99	44.45	3.51
3013	3271	1.153349	GGAACGGACATCCTGGAGC	60.153	63.158	1.52	0.00	33.98	4.70
3053	3311	9.784531	AAATTTCTAGTAGACCACCATATGATG	57.215	33.333	3.65	0.00	0.00	3.07
3138	3405	2.898612	TGCCCTTGCTTGATTGATTGAA	59.101	40.909	0.00	0.00	38.71	2.69
3161	3428	9.902196	TGAATGATATGATATGATTGTGTTTGC	57.098	29.630	1.84	0.00	0.00	3.68
3255	3525	2.060980	GCCTCCGAGACATGACCCT	61.061	63.158	0.00	0.00	0.00	4.34
3283	3553	1.415672	TTTCCCACCGGAGCTCACTT	61.416	55.000	17.19	0.00	40.10	3.16
3339	3609	4.469657	TGTTAGTTCAGAACCAAGGCAAT	58.530	39.130	9.85	0.00	0.00	3.56
3366	3645	6.037610	ACAACAACAACAACAACAACAACAAT	59.962	30.769	0.00	0.00	0.00	2.71
3377	3659	7.344910	ACAACAACAACAATAACAACAACAG	57.655	32.000	0.00	0.00	0.00	3.16
3468	3750	1.078497	CACCGAGCCCATAGTTGCA	60.078	57.895	0.00	0.00	0.00	4.08
3495	3777	1.845791	TGGCTATGCAGGATTGGAAGA	59.154	47.619	0.00	0.00	0.00	2.87
3594	3877	4.202567	ACATGGTGGGAGAATTACACAACT	60.203	41.667	0.00	0.00	36.87	3.16
3649	3932	0.890542	TCAGCAAGCTTTCCGCACAT	60.891	50.000	9.64	0.00	42.61	3.21
3670	3953	1.004044	CCCATGTCTCAACTGGAGCTT	59.996	52.381	0.00	0.00	43.70	3.74
3695	3978	4.077108	AGCATGAAGAAGCATGAGTTTCA	58.923	39.130	8.40	0.80	46.64	2.69
3703	3986	7.229306	TGAAGAAGCATGAGTTTCACAACTTAT	59.771	33.333	0.00	0.00	43.79	1.73
3782	4065	1.152819	CCCCAGATGATGTGGCCAG	60.153	63.158	5.11	0.00	33.24	4.85
3784	4067	0.477204	CCCAGATGATGTGGCCAGAT	59.523	55.000	16.64	16.64	33.24	2.90
3912	4195	6.009589	TCTTATGATTGAAGGGAAGCAACAA	58.990	36.000	0.00	0.00	0.00	2.83
3925	4208	2.854963	AGCAACAACAGATTGAGAGCA	58.145	42.857	0.00	0.00	39.30	4.26
3930	4213	5.106396	GCAACAACAGATTGAGAGCAGTAAT	60.106	40.000	0.00	0.00	39.30	1.89
3940	4223	9.815306	AGATTGAGAGCAGTAATAGGAAGTATA	57.185	33.333	0.00	0.00	0.00	1.47
3943	4226	9.642343	TTGAGAGCAGTAATAGGAAGTATAGAA	57.358	33.333	0.00	0.00	0.00	2.10
3958	4241	7.551974	GGAAGTATAGAAAAGGGAAGTACAACC	59.448	40.741	0.00	0.00	0.00	3.77
4030	4313	4.104383	CATAACCATGGAGGCCATAACT	57.896	45.455	21.47	0.00	43.15	2.24
4034	4317	4.910458	ACCATGGAGGCCATAACTATAC	57.090	45.455	21.47	0.00	43.15	1.47

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	6.716898	AAAAGAAATACTAAACGGACTCGG	57.283	37.500	0.00	0.00	41.39	4.63
175	191	2.221299	ACGCTAGGGTTTCAGGGCA	61.221	57.895	6.62	0.00	0.00	5.36
299	422	1.091197	ACCAAACGGTTTTCTCGCGT	61.091	50.000	5.77	0.00	30.22	6.01
358	519	6.257193	CGAATGTCCGCTATTTAACTAAACCT	59.743	38.462	0.00	0.00	0.00	3.50
389	551	3.248363	ACGGTGTTCCTTAAAACTAACGC	59.752	43.478	0.00	0.00	0.00	4.84
394	556	4.517832	GGATGAACGGTGTTCCTTAAAACT	59.482	41.667	7.18	0.00	0.00	2.66
402	564	1.997606	CTAACGGATGAACGGTGTTCC	59.002	52.381	7.18	0.00	38.39	3.62
474	638	5.447548	CGAAAATAATCGCGGAAAAACCCTA	60.448	40.000	6.13	0.00	35.85	3.53
521	692	5.564504	CGAGCGAAAAGATATACTAGAACGG	59.435	44.000	0.00	0.00	0.00	4.44
587	758	4.202673	TGGTTAAATGGAAAGAGGGCTTCT	60.203	41.667	0.00	0.00	37.93	2.85
695	866	5.975693	AGAATGGAATTAAACGGAGCAAA	57.024	34.783	0.00	0.00	36.07	3.68
712	883	3.716601	ACTCCGGTTTGCAAAAAGAATG	58.283	40.909	14.67	5.71	0.00	2.67
735	906	7.993183	AGATCTAACCAGAAAGTTCAACTGAAA	59.007	33.333	0.00	0.00	33.08	2.69
788	960	4.885907	AGCATACATAAGCACTCAAGCAAT	59.114	37.500	0.00	0.00	36.85	3.56
823	996	1.067776	GCACTCCGGGTATTCTATCGG	60.068	57.143	0.00	0.00	43.42	4.18
931	1120	5.007682	GTGAGGGTTGAAACTAAGGCATAA	58.992	41.667	0.00	0.00	0.00	1.90
956	1145	8.134202	TGTTAAGAGATCCTACTCATGAAACA	57.866	34.615	0.00	0.00	39.14	2.83
957	1147	9.039870	CATGTTAAGAGATCCTACTCATGAAAC	57.960	37.037	0.00	0.00	39.14	2.78
960	1150	7.201947	CCACATGTTAAGAGATCCTACTCATGA	60.202	40.741	15.87	0.00	39.14	3.07
1258	1480	0.106967	GATCCCTTTGAGCCTGGGTC	60.107	60.000	18.72	18.72	41.58	4.46
1622	1850	6.096673	ACCCAGCAGTTTAATTTAAAGTGG	57.903	37.500	26.55	17.60	45.03	4.00
1735	1974	6.183360	GCAAAAAGCCAATTTTTCCCTACAAA	60.183	34.615	0.00	0.00	45.87	2.83
1758	1997	8.588290	AGGTTCTATGGTTATATTGTTTTGCA	57.412	30.769	0.00	0.00	0.00	4.08
1826	2072	5.123820	TGGCAATATAACACAAGAGAGCAAC	59.876	40.000	0.00	0.00	0.00	4.17
2033	2284	8.311650	TGTCTCAAAAGAGAGCTTATTACAAC	57.688	34.615	0.00	0.00	35.59	3.32
2044	2295	4.753233	ACATCGGATGTCTCAAAAGAGAG	58.247	43.478	17.62	0.00	39.92	3.20
2060	2312	7.658179	AGCAATCATACACTTATTACATCGG	57.342	36.000	0.00	0.00	0.00	4.18
2127	2381	5.914898	TTTTAGTGTCATCTCTGGATCGA	57.085	39.130	0.00	0.00	0.00	3.59
2136	2390	8.807118	TCAAGTCTCTGTATTTTAGTGTCATCT	58.193	33.333	0.00	0.00	0.00	2.90
2224	2480	8.484214	AGAGTGATTTATGGCTCATCTTAGTA	57.516	34.615	0.00	0.00	0.00	1.82
2241	2498	8.250332	GTCAGAAATGAGTAGAGAAGAGTGATT	58.750	37.037	0.00	0.00	0.00	2.57
2340	2597	3.485463	TCCTTCAAGTGTCGTCCAAAT	57.515	42.857	0.00	0.00	0.00	2.32
2468	2725	2.159517	GGTTCAATGACTGGCGTGAATC	60.160	50.000	3.14	0.00	0.00	2.52
2483	2740	6.369629	TCAAAGGAAAACTCTATGGGTTCAA	58.630	36.000	0.00	0.00	0.00	2.69
2547	2805	1.544246	CCGATGCGTCCTATGGTGATA	59.456	52.381	0.00	0.00	0.00	2.15
2643	2901	1.903183	GACCTGTCCTTCCTACTGCTT	59.097	52.381	0.00	0.00	0.00	3.91
2689	2947	0.179121	TGGCGACGTATGTGATGGTC	60.179	55.000	0.00	0.00	0.00	4.02
2759	3017	6.609876	AGATCCTCTTCTAGCTCTGTGATTA	58.390	40.000	0.00	0.00	0.00	1.75
2760	3018	5.457686	AGATCCTCTTCTAGCTCTGTGATT	58.542	41.667	0.00	0.00	0.00	2.57
2781	3039	3.972133	TCCATCGGGTGTAGACTTAAGA	58.028	45.455	10.09	0.00	34.93	2.10
2795	3053	3.838244	TTTCCTCCTTGTATCCATCGG	57.162	47.619	0.00	0.00	0.00	4.18
2806	3064	5.178797	CACAAGTATCGTCATTTCCTCCTT	58.821	41.667	0.00	0.00	0.00	3.36
2926	3184	4.887655	AGTGTCATCGATGGTGATGTAGTA	59.112	41.667	24.61	0.00	44.82	1.82
2936	3194	1.534805	CGGAGTCAGTGTCATCGATGG	60.535	57.143	24.61	8.80	0.00	3.51
2993	3251	0.833287	CTCCAGGATGTCCGTTCCAT	59.167	55.000	0.00	0.00	42.08	3.41
2998	3256	1.613630	AAGGCTCCAGGATGTCCGT	60.614	57.895	0.00	0.00	42.08	4.69
3053	3311	6.952358	TCTATATACATGGGGGAACACTACTC	59.048	42.308	0.00	0.00	31.84	2.59
3138	3405	8.645814	AGGCAAACACAATCATATCATATCAT	57.354	30.769	0.00	0.00	0.00	2.45
3161	3428	3.405831	CACTACCCATATGCACATGAGG	58.594	50.000	6.52	8.65	0.00	3.86
3255	3525	1.631388	TCCGGTGGGAAAGCAAATCTA	59.369	47.619	0.00	0.00	40.15	1.98
3283	3553	3.920231	ATTCTGCTGCTGGATCAACTA	57.080	42.857	6.69	0.00	0.00	2.24
3339	3609	6.533723	TGTTGTTGTTGTTGTTGTTGTTGTTA	59.466	30.769	0.00	0.00	0.00	2.41
3366	3645	0.887387	GCGGAGGGCTGTTGTTGTTA	60.887	55.000	0.00	0.00	39.11	2.41
3468	3750	1.798626	TCCTGCATAGCCAGTCATCT	58.201	50.000	0.00	0.00	0.00	2.90
3495	3777	2.448749	ACCGGCAGTGGTTAACTCT	58.551	52.632	0.00	2.03	39.99	3.24
3571	3854	4.079253	GTTGTGTAATTCTCCCACCATGT	58.921	43.478	0.00	0.00	0.00	3.21
3594	3877	6.727394	AGTAACATTGGCTATGGGAAAAGTA	58.273	36.000	13.32	0.00	38.64	2.24
3649	3932	0.615331	GCTCCAGTTGAGACATGGGA	59.385	55.000	0.00	0.00	44.42	4.37
3670	3953	3.682696	ACTCATGCTTCTTCATGCTCAA	58.317	40.909	0.00	0.00	42.58	3.02
3695	3978	2.683742	CGATTCCCCTGGCATAAGTTGT	60.684	50.000	0.00	0.00	0.00	3.32
3703	3986	2.097110	ATAGTACGATTCCCCTGGCA	57.903	50.000	0.00	0.00	0.00	4.92
3782	4065	1.852942	TTCCTGCTTCGCGACATATC	58.147	50.000	9.15	0.00	0.00	1.63
3784	4067	2.087501	TTTTCCTGCTTCGCGACATA	57.912	45.000	9.15	0.00	0.00	2.29
3801	4084	6.872585	TCATTCAGCCCTTCCATAAAATTT	57.127	33.333	0.00	0.00	0.00	1.82
3804	4087	5.517924	TCATCATTCAGCCCTTCCATAAAA	58.482	37.500	0.00	0.00	0.00	1.52
3885	4168	4.202441	GCTTCCCTTCAATCATAAGAGCA	58.798	43.478	0.00	0.00	0.00	4.26
3912	4195	6.382570	ACTTCCTATTACTGCTCTCAATCTGT	59.617	38.462	0.00	0.00	0.00	3.41
3930	4213	9.551339	TTGTACTTCCCTTTTCTATACTTCCTA	57.449	33.333	0.00	0.00	0.00	2.94
3940	4223	3.181433	CCTGGGTTGTACTTCCCTTTTCT	60.181	47.826	20.67	0.00	43.74	2.52
3943	4226	2.375509	CTCCTGGGTTGTACTTCCCTTT	59.624	50.000	20.67	0.00	43.74	3.11
3958	4241	0.676151	GGTTTCTGCTGAGCTCCTGG	60.676	60.000	12.15	2.60	0.00	4.45

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.