Multiple sequence alignment - TraesCS7A01G263500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G263500 chr7A 100.000 5730 0 0 1 5730 261226579 261220850 0.000000e+00 10582
1 TraesCS7A01G263500 chr7A 96.591 88 3 0 2339 2426 261224157 261224070 4.630000e-31 147
2 TraesCS7A01G263500 chr7A 96.591 88 3 0 2423 2510 261224241 261224154 4.630000e-31 147
3 TraesCS7A01G263500 chr7D 94.571 3334 134 21 2423 5730 244954837 244951525 0.000000e+00 5110
4 TraesCS7A01G263500 chr7D 94.382 2136 74 12 294 2426 244956842 244954750 0.000000e+00 3238
5 TraesCS7A01G263500 chr7D 88.618 123 12 2 176 296 388700009 388700131 1.290000e-31 148
6 TraesCS7A01G263500 chr7B 93.909 3333 138 30 2423 5730 220868981 220865689 0.000000e+00 4970
7 TraesCS7A01G263500 chr7B 92.910 2144 92 22 301 2426 220870995 220868894 0.000000e+00 3062
8 TraesCS7A01G263500 chr7B 90.244 123 9 3 176 296 383736127 383736248 2.140000e-34 158
9 TraesCS7A01G263500 chr7B 89.831 118 11 1 179 295 81424989 81425106 3.580000e-32 150
10 TraesCS7A01G263500 chr2A 88.557 1171 111 13 2719 3886 14848713 14847563 0.000000e+00 1399
11 TraesCS7A01G263500 chr3A 87.500 136 14 3 179 313 291805833 291805700 2.760000e-33 154
12 TraesCS7A01G263500 chr3A 89.916 119 11 1 179 296 602271260 602271378 9.940000e-33 152
13 TraesCS7A01G263500 chr1A 89.831 118 11 1 179 295 208212533 208212650 3.580000e-32 150
14 TraesCS7A01G263500 chr3B 89.167 120 12 1 178 296 545185560 545185441 1.290000e-31 148
15 TraesCS7A01G263500 chr3B 85.926 135 15 4 178 308 160350321 160350455 2.150000e-29 141
16 TraesCS7A01G263500 chr1D 86.029 136 16 3 163 295 328894973 328894838 5.980000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G263500 chr7A 261220850 261226579 5729 True 3625.333333 10582 97.727333 1 5730 3 chr7A.!!$R1 5729
1 TraesCS7A01G263500 chr7D 244951525 244956842 5317 True 4174.000000 5110 94.476500 294 5730 2 chr7D.!!$R1 5436
2 TraesCS7A01G263500 chr7B 220865689 220870995 5306 True 4016.000000 4970 93.409500 301 5730 2 chr7B.!!$R1 5429
3 TraesCS7A01G263500 chr2A 14847563 14848713 1150 True 1399.000000 1399 88.557000 2719 3886 1 chr2A.!!$R1 1167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 195 0.033796 ACATACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30 F
450 468 0.378610 CTGCACGTGAGCTCGAGATA 59.621 55.000 22.23 0.00 34.99 1.98 F
2133 2163 0.324943 AAGGCTACATGGTCGTTGCT 59.675 50.000 0.00 0.00 37.70 3.91 F
2264 2294 0.396556 AAGGTGCCGGTTCCAAAGTT 60.397 50.000 16.87 2.67 0.00 2.66 F
3843 3877 1.134128 TGCCACTTTCTCTTGAGTGCA 60.134 47.619 0.00 0.00 41.44 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 2163 0.470766 ACCGGGAACTGCACAAAGTA 59.529 50.000 6.32 0.0 0.00 2.24 R
2285 2315 1.616865 CCCTCAGGTCACGTACAAAGA 59.383 52.381 0.00 0.0 0.00 2.52 R
4107 4142 0.820482 AACACGTGGTGGGCCTTTAC 60.820 55.000 21.57 0.0 37.94 2.01 R
4233 4275 0.889186 CCGTGCTAACCTGCAAAGGT 60.889 55.000 0.00 0.0 45.12 3.50 R
5620 5692 0.867753 GCGAATCGAGCGTGTCTGAT 60.868 55.000 6.91 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.957971 CACGAATGTGCTTTTCTAATCGT 58.042 39.130 0.00 0.00 42.32 3.73
54 55 6.089920 CACGAATGTGCTTTTCTAATCGTA 57.910 37.500 0.00 0.00 39.93 3.43
55 56 6.530567 CACGAATGTGCTTTTCTAATCGTAA 58.469 36.000 0.00 0.00 39.93 3.18
56 57 7.012943 CACGAATGTGCTTTTCTAATCGTAAA 58.987 34.615 0.00 0.00 39.93 2.01
57 58 7.532546 CACGAATGTGCTTTTCTAATCGTAAAA 59.467 33.333 0.00 0.00 39.93 1.52
58 59 8.071368 ACGAATGTGCTTTTCTAATCGTAAAAA 58.929 29.630 0.00 0.00 40.11 1.94
183 184 6.640518 TGAATGTTCAACTCCTACATACTCC 58.359 40.000 0.00 0.00 33.55 3.85
184 185 5.615925 ATGTTCAACTCCTACATACTCCC 57.384 43.478 0.00 0.00 31.11 4.30
185 186 4.684724 TGTTCAACTCCTACATACTCCCT 58.315 43.478 0.00 0.00 0.00 4.20
186 187 4.710375 TGTTCAACTCCTACATACTCCCTC 59.290 45.833 0.00 0.00 0.00 4.30
187 188 3.912248 TCAACTCCTACATACTCCCTCC 58.088 50.000 0.00 0.00 0.00 4.30
188 189 2.623889 CAACTCCTACATACTCCCTCCG 59.376 54.545 0.00 0.00 0.00 4.63
189 190 1.851653 ACTCCTACATACTCCCTCCGT 59.148 52.381 0.00 0.00 0.00 4.69
190 191 2.158638 ACTCCTACATACTCCCTCCGTC 60.159 54.545 0.00 0.00 0.00 4.79
191 192 1.144503 TCCTACATACTCCCTCCGTCC 59.855 57.143 0.00 0.00 0.00 4.79
192 193 1.236628 CTACATACTCCCTCCGTCCG 58.763 60.000 0.00 0.00 0.00 4.79
193 194 0.839277 TACATACTCCCTCCGTCCGA 59.161 55.000 0.00 0.00 0.00 4.55
194 195 0.033796 ACATACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
195 196 1.108776 CATACTCCCTCCGTCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
196 197 1.479323 CATACTCCCTCCGTCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
197 198 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
220 221 7.751768 AAACTTGTCCCAAATTTGTTTTTCA 57.248 28.000 16.73 6.16 0.00 2.69
221 222 7.751768 AACTTGTCCCAAATTTGTTTTTCAA 57.248 28.000 16.73 12.24 0.00 2.69
235 236 8.741101 TTTGTTTTTCAAATGGATGTATCGAG 57.259 30.769 0.00 0.00 40.56 4.04
236 237 6.321717 TGTTTTTCAAATGGATGTATCGAGC 58.678 36.000 0.00 0.00 0.00 5.03
237 238 6.072230 TGTTTTTCAAATGGATGTATCGAGCA 60.072 34.615 0.00 0.00 0.00 4.26
238 239 5.484173 TTTCAAATGGATGTATCGAGCAC 57.516 39.130 0.00 0.00 0.00 4.40
239 240 4.406648 TCAAATGGATGTATCGAGCACT 57.593 40.909 0.00 0.00 0.00 4.40
240 241 5.529581 TCAAATGGATGTATCGAGCACTA 57.470 39.130 0.00 0.00 0.00 2.74
241 242 5.912892 TCAAATGGATGTATCGAGCACTAA 58.087 37.500 0.00 0.00 0.00 2.24
242 243 5.753438 TCAAATGGATGTATCGAGCACTAAC 59.247 40.000 0.00 0.00 0.00 2.34
243 244 5.537300 AATGGATGTATCGAGCACTAACT 57.463 39.130 0.00 0.00 0.00 2.24
244 245 5.537300 ATGGATGTATCGAGCACTAACTT 57.463 39.130 0.00 0.00 0.00 2.66
245 246 4.682787 TGGATGTATCGAGCACTAACTTG 58.317 43.478 0.00 0.00 0.00 3.16
246 247 4.159693 TGGATGTATCGAGCACTAACTTGT 59.840 41.667 0.00 0.00 0.00 3.16
247 248 4.504461 GGATGTATCGAGCACTAACTTGTG 59.496 45.833 0.00 0.00 40.62 3.33
274 275 7.881775 GGATACATCCATTTAAAGGACAAGT 57.118 36.000 0.46 7.24 46.38 3.16
275 276 8.293699 GGATACATCCATTTAAAGGACAAGTT 57.706 34.615 0.46 0.00 46.38 2.66
276 277 8.749354 GGATACATCCATTTAAAGGACAAGTTT 58.251 33.333 0.46 1.59 46.38 2.66
280 281 9.758651 ACATCCATTTAAAGGACAAGTTTTTAC 57.241 29.630 0.46 0.00 38.13 2.01
281 282 8.911662 CATCCATTTAAAGGACAAGTTTTTACG 58.088 33.333 0.46 0.00 38.13 3.18
282 283 7.998580 TCCATTTAAAGGACAAGTTTTTACGT 58.001 30.769 0.46 0.00 0.00 3.57
283 284 9.118300 TCCATTTAAAGGACAAGTTTTTACGTA 57.882 29.630 0.46 0.00 0.00 3.57
284 285 9.172820 CCATTTAAAGGACAAGTTTTTACGTAC 57.827 33.333 0.46 0.00 0.00 3.67
285 286 8.885108 CATTTAAAGGACAAGTTTTTACGTACG 58.115 33.333 15.01 15.01 0.00 3.67
286 287 5.408204 AAAGGACAAGTTTTTACGTACGG 57.592 39.130 21.06 1.43 0.00 4.02
287 288 4.320608 AGGACAAGTTTTTACGTACGGA 57.679 40.909 21.06 8.59 0.00 4.69
288 289 4.301628 AGGACAAGTTTTTACGTACGGAG 58.698 43.478 21.06 0.00 0.00 4.63
289 290 3.429881 GGACAAGTTTTTACGTACGGAGG 59.570 47.826 21.06 1.02 0.00 4.30
290 291 3.392882 ACAAGTTTTTACGTACGGAGGG 58.607 45.455 21.06 1.64 0.00 4.30
291 292 3.069443 ACAAGTTTTTACGTACGGAGGGA 59.931 43.478 21.06 0.00 0.00 4.20
292 293 3.582714 AGTTTTTACGTACGGAGGGAG 57.417 47.619 21.06 0.00 0.00 4.30
320 321 8.119845 ACGTGCAAATTTTAATGAAGGAAAAAC 58.880 29.630 0.00 0.00 0.00 2.43
363 364 6.593770 TCACGAACATTTGCACTACATAGAAT 59.406 34.615 0.00 0.00 0.00 2.40
450 468 0.378610 CTGCACGTGAGCTCGAGATA 59.621 55.000 22.23 0.00 34.99 1.98
482 500 1.128692 GTGCGAGCTTGCTTTAATCGT 59.871 47.619 26.07 0.00 35.87 3.73
540 558 4.338682 CAGCAGTTTAGGAGTCCTACGTAT 59.661 45.833 18.97 2.68 35.63 3.06
541 559 5.530171 CAGCAGTTTAGGAGTCCTACGTATA 59.470 44.000 18.97 0.53 35.63 1.47
542 560 5.530543 AGCAGTTTAGGAGTCCTACGTATAC 59.469 44.000 18.97 11.31 35.63 1.47
549 567 6.696441 AGGAGTCCTACGTATACTTCTTTG 57.304 41.667 10.94 0.00 28.47 2.77
554 572 3.795101 CCTACGTATACTTCTTTGCACCG 59.205 47.826 0.00 0.00 0.00 4.94
555 573 1.997606 ACGTATACTTCTTTGCACCGC 59.002 47.619 0.56 0.00 0.00 5.68
560 578 0.602638 ACTTCTTTGCACCGCATCGA 60.603 50.000 0.00 0.00 38.76 3.59
571 589 1.065928 CGCATCGAGACCCACTACC 59.934 63.158 0.00 0.00 0.00 3.18
711 729 1.019673 CACCTCAGCGAAATCATGGG 58.980 55.000 0.00 0.00 0.00 4.00
740 758 0.960364 GGAAAGAGAATGCCGTGCCA 60.960 55.000 0.00 0.00 0.00 4.92
780 807 2.851588 GGATGGGCCTCCTCCTCC 60.852 72.222 4.53 0.00 31.68 4.30
781 808 2.288643 GATGGGCCTCCTCCTCCT 59.711 66.667 4.53 0.00 0.00 3.69
782 809 1.841103 GATGGGCCTCCTCCTCCTC 60.841 68.421 4.53 0.00 0.00 3.71
783 810 3.418623 ATGGGCCTCCTCCTCCTCC 62.419 68.421 4.53 0.00 0.00 4.30
784 811 3.773154 GGGCCTCCTCCTCCTCCT 61.773 72.222 0.84 0.00 0.00 3.69
785 812 2.123033 GGCCTCCTCCTCCTCCTC 60.123 72.222 0.00 0.00 0.00 3.71
786 813 2.123033 GCCTCCTCCTCCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
787 814 2.710826 GCCTCCTCCTCCTCCTCCT 61.711 68.421 0.00 0.00 0.00 3.69
788 815 1.541672 CCTCCTCCTCCTCCTCCTC 59.458 68.421 0.00 0.00 0.00 3.71
789 816 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
790 817 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
791 818 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
792 819 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
793 820 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
794 821 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
795 822 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
796 823 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
797 824 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
798 825 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
799 826 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
800 827 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
812 839 0.972983 TCCTCCTCTCCCTCGCTTTG 60.973 60.000 0.00 0.00 0.00 2.77
958 986 2.964389 GCATCGCGGGCTTCTCTC 60.964 66.667 6.13 0.00 0.00 3.20
1014 1042 3.181367 GCCATGAAGGACAGCGTG 58.819 61.111 0.00 0.00 41.22 5.34
1018 1046 1.918293 ATGAAGGACAGCGTGGGGA 60.918 57.895 0.00 0.00 0.00 4.81
1416 1444 0.755686 GCGACCAAGAGGATGAGGAT 59.244 55.000 0.00 0.00 38.69 3.24
1431 1459 3.448934 TGAGGATGCCTTCTTCTTCTCT 58.551 45.455 0.00 0.00 31.76 3.10
1788 1816 4.353437 AACGACCGCCTCCGTGAC 62.353 66.667 0.00 0.00 39.14 3.67
1900 1929 8.127327 TGCAAACAAATAAATCAATTGTTGGTG 58.873 29.630 5.13 5.78 44.15 4.17
1955 1984 6.969828 AAAATGTTTTGTTGGCGTCTTTAA 57.030 29.167 0.00 0.00 0.00 1.52
1956 1985 7.546778 AAAATGTTTTGTTGGCGTCTTTAAT 57.453 28.000 0.00 0.00 0.00 1.40
1957 1986 6.523676 AATGTTTTGTTGGCGTCTTTAATG 57.476 33.333 0.00 0.00 0.00 1.90
1958 1987 5.250235 TGTTTTGTTGGCGTCTTTAATGA 57.750 34.783 0.00 0.00 0.00 2.57
1959 1988 5.651530 TGTTTTGTTGGCGTCTTTAATGAA 58.348 33.333 0.00 0.00 0.00 2.57
2048 2077 5.464389 ACATGTTTTGTAACACTACTCGGTC 59.536 40.000 0.00 0.00 46.38 4.79
2049 2078 5.008619 TGTTTTGTAACACTACTCGGTCA 57.991 39.130 0.00 0.00 39.29 4.02
2125 2155 3.573967 ACAGGTTTTTGAAGGCTACATGG 59.426 43.478 0.00 0.00 0.00 3.66
2133 2163 0.324943 AAGGCTACATGGTCGTTGCT 59.675 50.000 0.00 0.00 37.70 3.91
2253 2283 3.270027 TCAGATGAATAACAAGGTGCCG 58.730 45.455 0.00 0.00 0.00 5.69
2264 2294 0.396556 AAGGTGCCGGTTCCAAAGTT 60.397 50.000 16.87 2.67 0.00 2.66
2285 2315 6.407202 AGTTATCAGAGTTTAGCGTCCATTT 58.593 36.000 0.00 0.00 0.00 2.32
2345 2375 2.172930 TCACGGACTATCAGGCTCTAGT 59.827 50.000 6.08 6.08 0.00 2.57
2346 2376 2.952978 CACGGACTATCAGGCTCTAGTT 59.047 50.000 7.50 0.00 0.00 2.24
2347 2377 3.381908 CACGGACTATCAGGCTCTAGTTT 59.618 47.826 7.50 0.00 0.00 2.66
2348 2378 4.024670 ACGGACTATCAGGCTCTAGTTTT 58.975 43.478 7.50 0.00 0.00 2.43
2349 2379 4.142138 ACGGACTATCAGGCTCTAGTTTTG 60.142 45.833 7.50 4.48 0.00 2.44
2350 2380 4.142138 CGGACTATCAGGCTCTAGTTTTGT 60.142 45.833 7.50 0.00 0.00 2.83
2351 2381 5.353111 GGACTATCAGGCTCTAGTTTTGTC 58.647 45.833 7.50 0.00 0.00 3.18
2352 2382 5.346181 ACTATCAGGCTCTAGTTTTGTCC 57.654 43.478 1.35 0.00 0.00 4.02
2353 2383 5.026790 ACTATCAGGCTCTAGTTTTGTCCT 58.973 41.667 1.35 0.00 0.00 3.85
2354 2384 6.195700 ACTATCAGGCTCTAGTTTTGTCCTA 58.804 40.000 1.35 0.00 0.00 2.94
2355 2385 5.606348 ATCAGGCTCTAGTTTTGTCCTAG 57.394 43.478 0.00 0.00 34.47 3.02
2356 2386 4.673968 TCAGGCTCTAGTTTTGTCCTAGA 58.326 43.478 0.00 0.00 38.81 2.43
2357 2387 5.273208 TCAGGCTCTAGTTTTGTCCTAGAT 58.727 41.667 0.00 0.00 39.97 1.98
2358 2388 5.721960 TCAGGCTCTAGTTTTGTCCTAGATT 59.278 40.000 0.00 0.00 39.97 2.40
2359 2389 6.213600 TCAGGCTCTAGTTTTGTCCTAGATTT 59.786 38.462 0.00 0.00 39.97 2.17
2360 2390 6.881602 CAGGCTCTAGTTTTGTCCTAGATTTT 59.118 38.462 0.00 0.00 39.97 1.82
2361 2391 6.881602 AGGCTCTAGTTTTGTCCTAGATTTTG 59.118 38.462 0.00 0.00 39.97 2.44
2362 2392 6.655425 GGCTCTAGTTTTGTCCTAGATTTTGT 59.345 38.462 0.00 0.00 39.97 2.83
2363 2393 7.148390 GGCTCTAGTTTTGTCCTAGATTTTGTC 60.148 40.741 0.00 0.00 39.97 3.18
2364 2394 7.387948 GCTCTAGTTTTGTCCTAGATTTTGTCA 59.612 37.037 0.00 0.00 39.97 3.58
2365 2395 8.833231 TCTAGTTTTGTCCTAGATTTTGTCAG 57.167 34.615 0.00 0.00 36.78 3.51
2366 2396 6.319141 AGTTTTGTCCTAGATTTTGTCAGC 57.681 37.500 0.00 0.00 0.00 4.26
2367 2397 5.241728 AGTTTTGTCCTAGATTTTGTCAGCC 59.758 40.000 0.00 0.00 0.00 4.85
2368 2398 4.365514 TTGTCCTAGATTTTGTCAGCCA 57.634 40.909 0.00 0.00 0.00 4.75
2369 2399 3.942829 TGTCCTAGATTTTGTCAGCCAG 58.057 45.455 0.00 0.00 0.00 4.85
2370 2400 3.582647 TGTCCTAGATTTTGTCAGCCAGA 59.417 43.478 0.00 0.00 0.00 3.86
2371 2401 4.187694 GTCCTAGATTTTGTCAGCCAGAG 58.812 47.826 0.00 0.00 0.00 3.35
2372 2402 4.081420 GTCCTAGATTTTGTCAGCCAGAGA 60.081 45.833 0.00 0.00 0.00 3.10
2373 2403 4.532126 TCCTAGATTTTGTCAGCCAGAGAA 59.468 41.667 0.00 0.00 0.00 2.87
2374 2404 5.013079 TCCTAGATTTTGTCAGCCAGAGAAA 59.987 40.000 0.00 0.00 37.68 2.52
2375 2405 5.884792 CCTAGATTTTGTCAGCCAGAGAAAT 59.115 40.000 0.00 0.63 39.02 2.17
2376 2406 5.640189 AGATTTTGTCAGCCAGAGAAATG 57.360 39.130 0.83 0.00 39.02 2.32
2377 2407 5.319453 AGATTTTGTCAGCCAGAGAAATGA 58.681 37.500 0.83 0.00 39.02 2.57
2378 2408 5.950549 AGATTTTGTCAGCCAGAGAAATGAT 59.049 36.000 0.83 0.00 39.02 2.45
2379 2409 6.436532 AGATTTTGTCAGCCAGAGAAATGATT 59.563 34.615 0.83 0.00 39.02 2.57
2380 2410 5.381174 TTTGTCAGCCAGAGAAATGATTG 57.619 39.130 0.00 0.00 34.88 2.67
2381 2411 3.349927 TGTCAGCCAGAGAAATGATTGG 58.650 45.455 0.00 0.00 0.00 3.16
2382 2412 3.245016 TGTCAGCCAGAGAAATGATTGGT 60.245 43.478 0.00 0.00 33.21 3.67
2383 2413 3.760684 GTCAGCCAGAGAAATGATTGGTT 59.239 43.478 0.00 0.00 33.21 3.67
2384 2414 4.219288 GTCAGCCAGAGAAATGATTGGTTT 59.781 41.667 0.00 0.00 33.21 3.27
2385 2415 4.460382 TCAGCCAGAGAAATGATTGGTTTC 59.540 41.667 0.00 0.00 36.15 2.78
2386 2416 4.219070 CAGCCAGAGAAATGATTGGTTTCA 59.781 41.667 0.00 0.00 37.89 2.69
2387 2417 4.219288 AGCCAGAGAAATGATTGGTTTCAC 59.781 41.667 0.00 0.00 37.89 3.18
2388 2418 4.219288 GCCAGAGAAATGATTGGTTTCACT 59.781 41.667 0.00 0.00 37.10 3.41
2389 2419 5.415701 GCCAGAGAAATGATTGGTTTCACTA 59.584 40.000 0.00 0.00 35.34 2.74
2390 2420 6.404074 GCCAGAGAAATGATTGGTTTCACTAG 60.404 42.308 0.00 0.00 35.34 2.57
2391 2421 6.656693 CCAGAGAAATGATTGGTTTCACTAGT 59.343 38.462 0.00 0.00 35.34 2.57
2392 2422 7.175641 CCAGAGAAATGATTGGTTTCACTAGTT 59.824 37.037 0.00 0.00 35.34 2.24
2393 2423 8.571336 CAGAGAAATGATTGGTTTCACTAGTTT 58.429 33.333 0.00 0.00 35.34 2.66
2394 2424 9.136323 AGAGAAATGATTGGTTTCACTAGTTTT 57.864 29.630 0.00 0.00 35.63 2.43
2395 2425 9.185192 GAGAAATGATTGGTTTCACTAGTTTTG 57.815 33.333 0.00 0.00 37.89 2.44
2396 2426 8.912988 AGAAATGATTGGTTTCACTAGTTTTGA 58.087 29.630 0.00 0.00 37.89 2.69
2397 2427 9.185192 GAAATGATTGGTTTCACTAGTTTTGAG 57.815 33.333 0.00 0.00 36.00 3.02
2398 2428 7.823745 ATGATTGGTTTCACTAGTTTTGAGT 57.176 32.000 0.00 0.00 0.00 3.41
2399 2429 8.918202 ATGATTGGTTTCACTAGTTTTGAGTA 57.082 30.769 0.00 0.00 0.00 2.59
2400 2430 8.378172 TGATTGGTTTCACTAGTTTTGAGTAG 57.622 34.615 0.00 0.00 0.00 2.57
2401 2431 8.208224 TGATTGGTTTCACTAGTTTTGAGTAGA 58.792 33.333 0.00 0.00 0.00 2.59
2402 2432 8.608844 ATTGGTTTCACTAGTTTTGAGTAGAG 57.391 34.615 0.00 0.00 0.00 2.43
2403 2433 7.356089 TGGTTTCACTAGTTTTGAGTAGAGA 57.644 36.000 0.00 0.00 0.00 3.10
2404 2434 7.963532 TGGTTTCACTAGTTTTGAGTAGAGAT 58.036 34.615 0.00 0.00 0.00 2.75
2405 2435 9.085645 TGGTTTCACTAGTTTTGAGTAGAGATA 57.914 33.333 0.00 0.00 0.00 1.98
2406 2436 9.924650 GGTTTCACTAGTTTTGAGTAGAGATAA 57.075 33.333 0.00 0.00 0.00 1.75
2414 2444 8.056407 AGTTTTGAGTAGAGATAAATTTGCCC 57.944 34.615 0.00 0.00 0.00 5.36
2415 2445 7.890655 AGTTTTGAGTAGAGATAAATTTGCCCT 59.109 33.333 0.00 0.00 0.00 5.19
2416 2446 8.523658 GTTTTGAGTAGAGATAAATTTGCCCTT 58.476 33.333 0.00 0.00 0.00 3.95
2417 2447 8.650143 TTTGAGTAGAGATAAATTTGCCCTTT 57.350 30.769 0.00 0.00 0.00 3.11
2418 2448 9.747898 TTTGAGTAGAGATAAATTTGCCCTTTA 57.252 29.630 0.00 0.00 0.00 1.85
2419 2449 9.920946 TTGAGTAGAGATAAATTTGCCCTTTAT 57.079 29.630 0.00 0.00 32.78 1.40
2420 2450 9.920946 TGAGTAGAGATAAATTTGCCCTTTATT 57.079 29.630 0.00 0.00 30.81 1.40
2422 2452 9.057089 AGTAGAGATAAATTTGCCCTTTATTCG 57.943 33.333 0.00 0.00 30.81 3.34
2423 2453 6.739112 AGAGATAAATTTGCCCTTTATTCGC 58.261 36.000 0.00 0.00 30.81 4.70
2424 2454 6.547510 AGAGATAAATTTGCCCTTTATTCGCT 59.452 34.615 0.00 0.00 30.81 4.93
2425 2455 6.739112 AGATAAATTTGCCCTTTATTCGCTC 58.261 36.000 0.00 0.00 30.81 5.03
2426 2456 6.547510 AGATAAATTTGCCCTTTATTCGCTCT 59.452 34.615 0.00 0.00 30.81 4.09
2427 2457 7.719633 AGATAAATTTGCCCTTTATTCGCTCTA 59.280 33.333 0.00 0.00 30.81 2.43
2428 2458 6.524101 AAATTTGCCCTTTATTCGCTCTAA 57.476 33.333 0.00 0.00 0.00 2.10
2506 2536 9.355916 AGTAGAGATAAATTTGCCCTTTATTCC 57.644 33.333 0.00 0.00 30.81 3.01
2628 2658 5.132502 CAGGTTGGCTGATAATGAATGGTA 58.867 41.667 0.00 0.00 0.00 3.25
2714 2744 4.895224 TCGCGATATGAAGAAGTGTACT 57.105 40.909 3.71 0.00 0.00 2.73
3077 3107 6.336842 AGATCAAGGAACCACAATGAAAAG 57.663 37.500 0.00 0.00 0.00 2.27
3078 3108 6.070656 AGATCAAGGAACCACAATGAAAAGA 58.929 36.000 0.00 0.00 0.00 2.52
3164 3194 3.072915 TGCTCAAGGAGATTTCTTGTGGA 59.927 43.478 0.00 0.00 41.52 4.02
3254 3284 4.020396 ACAAATATTTGCCAAGTGCCATCA 60.020 37.500 24.82 0.00 41.79 3.07
3499 3532 4.453819 AGCAAAGTCTAAACATGACTGCTC 59.546 41.667 0.00 0.00 43.16 4.26
3501 3534 5.639506 GCAAAGTCTAAACATGACTGCTCTA 59.360 40.000 0.00 0.00 43.16 2.43
3510 3543 6.642707 AACATGACTGCTCTACTAGGATAC 57.357 41.667 0.00 0.00 0.00 2.24
3548 3581 3.584848 ACAAGGAGTCCTCTAGTTTGCAT 59.415 43.478 13.43 0.00 30.89 3.96
3563 3596 3.256620 GCATTCAGCGGTTATTGGC 57.743 52.632 0.00 0.00 0.00 4.52
3614 3647 5.835113 AAAGCCACGTGCATTAGATAATT 57.165 34.783 10.91 0.00 44.83 1.40
3713 3747 1.739562 GCTCGACCTGAACCTGCTG 60.740 63.158 0.00 0.00 0.00 4.41
3771 3805 1.891060 GCGCACTGTCGTTCCTCTTG 61.891 60.000 0.30 0.00 0.00 3.02
3842 3876 1.265365 GTGCCACTTTCTCTTGAGTGC 59.735 52.381 0.00 0.00 41.44 4.40
3843 3877 1.134128 TGCCACTTTCTCTTGAGTGCA 60.134 47.619 0.00 0.00 41.44 4.57
3856 3890 2.181021 GTGCATTCAGGCTGCTGC 59.819 61.111 25.60 25.60 40.34 5.25
3958 3992 6.428159 GCTATATGGTCCCATTTAGTGTGAAG 59.572 42.308 18.86 2.52 38.95 3.02
3978 4013 1.936547 GGCTTTAGGTGCTCTCAATCG 59.063 52.381 0.00 0.00 0.00 3.34
4061 4096 4.022068 TCATGGGTCATCTTGTTTCTTTGC 60.022 41.667 0.00 0.00 0.00 3.68
4107 4142 3.434641 CAGCCCTGATAATTCGCTGTATG 59.565 47.826 0.00 0.00 41.56 2.39
4168 4205 4.207165 AGAGAAGTAGAGTCTCCATCAGC 58.793 47.826 0.00 0.00 42.17 4.26
4225 4267 8.378421 GGTACGTTTGTTGATATAGTTCTTGTC 58.622 37.037 0.00 0.00 0.00 3.18
4226 4268 7.956420 ACGTTTGTTGATATAGTTCTTGTCA 57.044 32.000 0.00 0.00 0.00 3.58
4228 4270 8.656849 ACGTTTGTTGATATAGTTCTTGTCATC 58.343 33.333 0.00 0.00 0.00 2.92
4550 4592 8.421002 TGAATGAACCGATGAACAGATAGATAA 58.579 33.333 0.00 0.00 0.00 1.75
4554 4596 6.090483 ACCGATGAACAGATAGATAACCTG 57.910 41.667 0.00 0.00 0.00 4.00
4733 4778 2.896854 GCAATGGCGGATGAGCGA 60.897 61.111 0.00 0.00 38.18 4.93
4734 4779 2.890109 GCAATGGCGGATGAGCGAG 61.890 63.158 0.00 0.00 38.18 5.03
4735 4780 2.590007 AATGGCGGATGAGCGAGC 60.590 61.111 0.00 0.00 38.18 5.03
4779 4824 1.596477 GGAGATGACATCCTGCGCC 60.596 63.158 11.92 3.00 33.77 6.53
4787 4832 4.530857 ATCCTGCGCCGCACCTAC 62.531 66.667 8.16 0.00 33.79 3.18
4919 4968 5.592054 TCTCCTCAGAACACATAAATAGCG 58.408 41.667 0.00 0.00 0.00 4.26
4934 4983 9.931210 ACATAAATAGCGAGCTTAATTTTACAC 57.069 29.630 1.86 0.00 0.00 2.90
4935 4984 9.929722 CATAAATAGCGAGCTTAATTTTACACA 57.070 29.630 1.86 0.00 0.00 3.72
5017 5066 1.338769 CCGCTGCTTAACCTACCAACT 60.339 52.381 0.00 0.00 0.00 3.16
5018 5067 2.093869 CCGCTGCTTAACCTACCAACTA 60.094 50.000 0.00 0.00 0.00 2.24
5019 5068 2.928116 CGCTGCTTAACCTACCAACTAC 59.072 50.000 0.00 0.00 0.00 2.73
5020 5069 2.928116 GCTGCTTAACCTACCAACTACG 59.072 50.000 0.00 0.00 0.00 3.51
5064 5113 6.423001 ACGACAAACAATGTACTCCTAAGAAC 59.577 38.462 0.00 0.00 44.12 3.01
5065 5114 6.645415 CGACAAACAATGTACTCCTAAGAACT 59.355 38.462 0.00 0.00 44.12 3.01
5113 5168 4.486125 TGAACATATCAAGGTGCTGCTA 57.514 40.909 0.00 0.00 34.30 3.49
5116 5171 5.297527 TGAACATATCAAGGTGCTGCTATTG 59.702 40.000 0.00 3.60 34.30 1.90
5124 5179 2.216898 GGTGCTGCTATTGCTCCTAAG 58.783 52.381 0.00 0.00 39.95 2.18
5138 5193 3.265791 CTCCTAAGTGATTGGTCAGTGC 58.734 50.000 0.00 0.00 38.04 4.40
5294 5349 1.633432 CTGGTCTTGTTCCCCCACATA 59.367 52.381 0.00 0.00 0.00 2.29
5373 5428 1.063972 TGCACGCAACAAAGCAGAC 59.936 52.632 0.00 0.00 32.48 3.51
5439 5506 2.168313 ACACAGATGCATGGACGTATGA 59.832 45.455 2.46 0.00 0.00 2.15
5444 5511 5.186603 ACAGATGCATGGACGTATGATCTAT 59.813 40.000 2.46 0.00 30.70 1.98
5445 5512 6.378280 ACAGATGCATGGACGTATGATCTATA 59.622 38.462 2.46 0.00 30.70 1.31
5561 5633 2.105128 GCCGTCAGCAGCGAGTAT 59.895 61.111 0.00 0.00 42.97 2.12
5618 5690 1.602377 CTCACCCACGAAACAAGAACC 59.398 52.381 0.00 0.00 0.00 3.62
5620 5692 0.178533 ACCCACGAAACAAGAACCGA 59.821 50.000 0.00 0.00 0.00 4.69
5628 5700 3.120991 CGAAACAAGAACCGATCAGACAC 60.121 47.826 0.00 0.00 0.00 3.67
5629 5701 2.065993 ACAAGAACCGATCAGACACG 57.934 50.000 0.00 0.00 0.00 4.49
5630 5702 0.716108 CAAGAACCGATCAGACACGC 59.284 55.000 0.00 0.00 0.00 5.34
5665 5737 0.247460 CAGAAGCACACGGGAGATCA 59.753 55.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.957971 ACGATTAGAAAAGCACATTCGTG 58.042 39.130 0.00 0.00 46.56 4.35
32 33 6.715344 TTACGATTAGAAAAGCACATTCGT 57.285 33.333 0.00 0.00 41.04 3.85
33 34 8.429739 TTTTTACGATTAGAAAAGCACATTCG 57.570 30.769 0.00 0.00 32.04 3.34
158 159 7.103641 GGAGTATGTAGGAGTTGAACATTCAA 58.896 38.462 2.89 2.89 44.31 2.69
159 160 6.351881 GGGAGTATGTAGGAGTTGAACATTCA 60.352 42.308 0.00 0.00 35.54 2.57
160 161 6.049790 GGGAGTATGTAGGAGTTGAACATTC 58.950 44.000 0.00 0.00 35.54 2.67
161 162 5.726793 AGGGAGTATGTAGGAGTTGAACATT 59.273 40.000 0.00 0.00 35.54 2.71
162 163 5.281314 AGGGAGTATGTAGGAGTTGAACAT 58.719 41.667 0.00 0.00 37.58 2.71
163 164 4.684724 AGGGAGTATGTAGGAGTTGAACA 58.315 43.478 0.00 0.00 0.00 3.18
164 165 4.099727 GGAGGGAGTATGTAGGAGTTGAAC 59.900 50.000 0.00 0.00 0.00 3.18
165 166 4.287552 GGAGGGAGTATGTAGGAGTTGAA 58.712 47.826 0.00 0.00 0.00 2.69
166 167 3.687551 CGGAGGGAGTATGTAGGAGTTGA 60.688 52.174 0.00 0.00 0.00 3.18
167 168 2.623889 CGGAGGGAGTATGTAGGAGTTG 59.376 54.545 0.00 0.00 0.00 3.16
168 169 2.244252 ACGGAGGGAGTATGTAGGAGTT 59.756 50.000 0.00 0.00 0.00 3.01
169 170 1.851653 ACGGAGGGAGTATGTAGGAGT 59.148 52.381 0.00 0.00 0.00 3.85
170 171 2.506444 GACGGAGGGAGTATGTAGGAG 58.494 57.143 0.00 0.00 0.00 3.69
171 172 1.144503 GGACGGAGGGAGTATGTAGGA 59.855 57.143 0.00 0.00 0.00 2.94
172 173 1.618487 GGACGGAGGGAGTATGTAGG 58.382 60.000 0.00 0.00 0.00 3.18
173 174 1.202734 TCGGACGGAGGGAGTATGTAG 60.203 57.143 0.00 0.00 0.00 2.74
174 175 0.839277 TCGGACGGAGGGAGTATGTA 59.161 55.000 0.00 0.00 0.00 2.29
175 176 0.033796 TTCGGACGGAGGGAGTATGT 60.034 55.000 0.00 0.00 0.00 2.29
176 177 1.108776 TTTCGGACGGAGGGAGTATG 58.891 55.000 0.00 0.00 0.00 2.39
177 178 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
178 179 1.631405 TTTTTCGGACGGAGGGAGTA 58.369 50.000 0.00 0.00 0.00 2.59
179 180 2.444281 TTTTTCGGACGGAGGGAGT 58.556 52.632 0.00 0.00 0.00 3.85
195 196 8.633561 TTGAAAAACAAATTTGGGACAAGTTTT 58.366 25.926 21.74 13.57 38.59 2.43
196 197 8.171164 TTGAAAAACAAATTTGGGACAAGTTT 57.829 26.923 21.74 8.66 38.59 2.66
197 198 7.751768 TTGAAAAACAAATTTGGGACAAGTT 57.248 28.000 21.74 2.87 38.59 2.66
198 199 7.751768 TTTGAAAAACAAATTTGGGACAAGT 57.248 28.000 21.74 0.96 43.07 3.16
211 212 6.806249 GCTCGATACATCCATTTGAAAAACAA 59.194 34.615 0.00 0.00 36.65 2.83
212 213 6.072230 TGCTCGATACATCCATTTGAAAAACA 60.072 34.615 0.00 0.00 0.00 2.83
213 214 6.251376 GTGCTCGATACATCCATTTGAAAAAC 59.749 38.462 0.00 0.00 0.00 2.43
214 215 6.150976 AGTGCTCGATACATCCATTTGAAAAA 59.849 34.615 3.24 0.00 0.00 1.94
215 216 5.647658 AGTGCTCGATACATCCATTTGAAAA 59.352 36.000 3.24 0.00 0.00 2.29
216 217 5.185454 AGTGCTCGATACATCCATTTGAAA 58.815 37.500 3.24 0.00 0.00 2.69
217 218 4.769688 AGTGCTCGATACATCCATTTGAA 58.230 39.130 3.24 0.00 0.00 2.69
218 219 4.406648 AGTGCTCGATACATCCATTTGA 57.593 40.909 3.24 0.00 0.00 2.69
219 220 5.755375 AGTTAGTGCTCGATACATCCATTTG 59.245 40.000 3.24 0.00 0.00 2.32
220 221 5.918608 AGTTAGTGCTCGATACATCCATTT 58.081 37.500 3.24 0.00 0.00 2.32
221 222 5.537300 AGTTAGTGCTCGATACATCCATT 57.463 39.130 3.24 0.00 0.00 3.16
222 223 5.163405 ACAAGTTAGTGCTCGATACATCCAT 60.163 40.000 3.24 0.00 0.00 3.41
223 224 4.159693 ACAAGTTAGTGCTCGATACATCCA 59.840 41.667 3.24 0.00 0.00 3.41
224 225 4.504461 CACAAGTTAGTGCTCGATACATCC 59.496 45.833 3.24 0.00 32.04 3.51
225 226 5.627802 CACAAGTTAGTGCTCGATACATC 57.372 43.478 3.24 0.00 32.04 3.06
236 237 4.572389 GGATGTATCCAGCACAAGTTAGTG 59.428 45.833 6.03 0.00 46.38 2.74
237 238 4.770795 GGATGTATCCAGCACAAGTTAGT 58.229 43.478 6.03 0.00 46.38 2.24
254 255 9.758651 GTAAAAACTTGTCCTTTAAATGGATGT 57.241 29.630 8.89 6.79 35.87 3.06
255 256 8.911662 CGTAAAAACTTGTCCTTTAAATGGATG 58.088 33.333 8.89 6.36 35.87 3.51
256 257 8.635328 ACGTAAAAACTTGTCCTTTAAATGGAT 58.365 29.630 8.89 0.00 35.87 3.41
257 258 7.998580 ACGTAAAAACTTGTCCTTTAAATGGA 58.001 30.769 0.00 3.19 0.00 3.41
258 259 9.172820 GTACGTAAAAACTTGTCCTTTAAATGG 57.827 33.333 0.00 0.00 0.00 3.16
259 260 8.885108 CGTACGTAAAAACTTGTCCTTTAAATG 58.115 33.333 7.22 0.00 0.00 2.32
260 261 8.069574 CCGTACGTAAAAACTTGTCCTTTAAAT 58.930 33.333 15.21 0.00 0.00 1.40
261 262 7.278868 TCCGTACGTAAAAACTTGTCCTTTAAA 59.721 33.333 15.21 0.00 0.00 1.52
262 263 6.758886 TCCGTACGTAAAAACTTGTCCTTTAA 59.241 34.615 15.21 0.00 0.00 1.52
263 264 6.276847 TCCGTACGTAAAAACTTGTCCTTTA 58.723 36.000 15.21 0.00 0.00 1.85
264 265 5.115480 TCCGTACGTAAAAACTTGTCCTTT 58.885 37.500 15.21 0.00 0.00 3.11
265 266 4.692228 TCCGTACGTAAAAACTTGTCCTT 58.308 39.130 15.21 0.00 0.00 3.36
266 267 4.301628 CTCCGTACGTAAAAACTTGTCCT 58.698 43.478 15.21 0.00 0.00 3.85
267 268 3.429881 CCTCCGTACGTAAAAACTTGTCC 59.570 47.826 15.21 0.00 0.00 4.02
268 269 3.429881 CCCTCCGTACGTAAAAACTTGTC 59.570 47.826 15.21 0.00 0.00 3.18
269 270 3.069443 TCCCTCCGTACGTAAAAACTTGT 59.931 43.478 15.21 0.00 0.00 3.16
270 271 3.652274 TCCCTCCGTACGTAAAAACTTG 58.348 45.455 15.21 0.00 0.00 3.16
271 272 3.321968 ACTCCCTCCGTACGTAAAAACTT 59.678 43.478 15.21 0.00 0.00 2.66
272 273 2.893489 ACTCCCTCCGTACGTAAAAACT 59.107 45.455 15.21 0.00 0.00 2.66
273 274 3.303881 ACTCCCTCCGTACGTAAAAAC 57.696 47.619 15.21 0.00 0.00 2.43
274 275 4.434713 GTACTCCCTCCGTACGTAAAAA 57.565 45.455 15.21 0.00 0.00 1.94
281 282 1.308069 TGCACGTACTCCCTCCGTAC 61.308 60.000 0.00 0.00 35.15 3.67
282 283 0.608856 TTGCACGTACTCCCTCCGTA 60.609 55.000 0.00 0.00 32.81 4.02
283 284 1.466025 TTTGCACGTACTCCCTCCGT 61.466 55.000 0.00 0.00 34.71 4.69
284 285 0.108329 ATTTGCACGTACTCCCTCCG 60.108 55.000 0.00 0.00 0.00 4.63
285 286 2.109425 AATTTGCACGTACTCCCTCC 57.891 50.000 0.00 0.00 0.00 4.30
286 287 5.616488 TTAAAATTTGCACGTACTCCCTC 57.384 39.130 0.00 0.00 0.00 4.30
287 288 5.708230 TCATTAAAATTTGCACGTACTCCCT 59.292 36.000 0.00 0.00 0.00 4.20
288 289 5.945155 TCATTAAAATTTGCACGTACTCCC 58.055 37.500 0.00 0.00 0.00 4.30
289 290 6.526674 CCTTCATTAAAATTTGCACGTACTCC 59.473 38.462 0.00 0.00 0.00 3.85
290 291 7.302524 TCCTTCATTAAAATTTGCACGTACTC 58.697 34.615 0.00 0.00 0.00 2.59
291 292 7.209471 TCCTTCATTAAAATTTGCACGTACT 57.791 32.000 0.00 0.00 0.00 2.73
292 293 7.861176 TTCCTTCATTAAAATTTGCACGTAC 57.139 32.000 0.00 0.00 0.00 3.67
296 297 9.949174 ATGTTTTTCCTTCATTAAAATTTGCAC 57.051 25.926 0.00 0.00 0.00 4.57
320 321 9.619316 TGTTCGTGAAAAATAACATTAGGAATG 57.381 29.630 0.00 0.00 44.48 2.67
331 332 7.915923 TGTAGTGCAAATGTTCGTGAAAAATAA 59.084 29.630 0.00 0.00 0.00 1.40
540 558 1.075542 CGATGCGGTGCAAAGAAGTA 58.924 50.000 0.00 0.00 43.62 2.24
541 559 0.602638 TCGATGCGGTGCAAAGAAGT 60.603 50.000 0.00 0.00 43.62 3.01
542 560 0.095935 CTCGATGCGGTGCAAAGAAG 59.904 55.000 0.00 0.00 43.62 2.85
549 567 4.451150 TGGGTCTCGATGCGGTGC 62.451 66.667 0.00 0.00 0.00 5.01
554 572 1.327690 TGGGTAGTGGGTCTCGATGC 61.328 60.000 0.00 0.00 0.00 3.91
555 573 1.069204 CATGGGTAGTGGGTCTCGATG 59.931 57.143 0.00 0.00 0.00 3.84
560 578 0.620700 GGGACATGGGTAGTGGGTCT 60.621 60.000 0.00 0.00 0.00 3.85
571 589 1.375908 CTGACACGGTGGGACATGG 60.376 63.158 13.48 0.00 44.52 3.66
711 729 3.423154 CTCTTTCCACGTGCCGCC 61.423 66.667 10.91 0.00 0.00 6.13
767 785 3.767044 GAGGAGGAGGAGGAGGCCC 62.767 73.684 0.00 0.00 0.00 5.80
780 807 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
781 808 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
782 809 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
783 810 0.478507 GAGAGGAGGAGGAGGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
784 811 0.996762 GGAGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
785 812 1.541672 GGAGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
786 813 0.998945 AGGGAGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
787 814 0.996762 GAGGGAGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
788 815 1.541672 GAGGGAGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
789 816 1.150536 CGAGGGAGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
790 817 3.063197 GCGAGGGAGAGGAGGAGGA 62.063 68.421 0.00 0.00 0.00 3.71
791 818 2.520741 GCGAGGGAGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
792 819 0.686112 AAAGCGAGGGAGAGGAGGAG 60.686 60.000 0.00 0.00 0.00 3.69
793 820 0.972983 CAAAGCGAGGGAGAGGAGGA 60.973 60.000 0.00 0.00 0.00 3.71
794 821 1.261238 ACAAAGCGAGGGAGAGGAGG 61.261 60.000 0.00 0.00 0.00 4.30
795 822 0.174617 GACAAAGCGAGGGAGAGGAG 59.825 60.000 0.00 0.00 0.00 3.69
796 823 1.258445 GGACAAAGCGAGGGAGAGGA 61.258 60.000 0.00 0.00 0.00 3.71
797 824 1.219393 GGACAAAGCGAGGGAGAGG 59.781 63.158 0.00 0.00 0.00 3.69
798 825 1.219393 GGGACAAAGCGAGGGAGAG 59.781 63.158 0.00 0.00 0.00 3.20
799 826 1.535444 TGGGACAAAGCGAGGGAGA 60.535 57.895 0.00 0.00 31.92 3.71
800 827 3.068881 TGGGACAAAGCGAGGGAG 58.931 61.111 0.00 0.00 31.92 4.30
812 839 1.442148 GACTGCGAGGGTATGGGAC 59.558 63.158 0.00 0.00 0.00 4.46
884 911 3.522731 CGGGAGAGCGAGAGGGTG 61.523 72.222 0.00 0.00 0.00 4.61
951 979 2.485795 CCCGAGCCGAGGAGAGAAG 61.486 68.421 0.00 0.00 0.00 2.85
991 1019 2.045926 GTCCTTCATGGCCAGCGT 60.046 61.111 13.05 0.00 35.26 5.07
1014 1042 4.767255 CAGTGCTGCCTCGTCCCC 62.767 72.222 0.00 0.00 0.00 4.81
1227 1255 2.507992 CAGTCGGCGCAGAGGAAG 60.508 66.667 11.47 0.00 0.00 3.46
1416 1444 3.244700 CCAAGGAAGAGAAGAAGAAGGCA 60.245 47.826 0.00 0.00 0.00 4.75
1788 1816 0.703466 GAAGTTGCTCTTCGTCGTCG 59.297 55.000 0.00 0.00 42.26 5.12
1873 1902 8.848182 ACCAACAATTGATTTATTTGTTTGCAT 58.152 25.926 13.59 0.00 39.53 3.96
1874 1903 8.127327 CACCAACAATTGATTTATTTGTTTGCA 58.873 29.630 13.59 0.00 39.53 4.08
1900 1929 8.801715 ACAATTGACATGTAAATTGTCTGAAC 57.198 30.769 34.56 6.89 46.49 3.18
1932 1961 6.969828 TTAAAGACGCCAACAAAACATTTT 57.030 29.167 0.00 0.00 0.00 1.82
1934 1963 6.276847 TCATTAAAGACGCCAACAAAACATT 58.723 32.000 0.00 0.00 0.00 2.71
1955 1984 7.707893 GGCAATGCAACTAATTTAGTCATTCAT 59.292 33.333 15.42 11.01 38.26 2.57
1956 1985 7.035004 GGCAATGCAACTAATTTAGTCATTCA 58.965 34.615 15.42 9.73 38.26 2.57
1957 1986 7.260603 AGGCAATGCAACTAATTTAGTCATTC 58.739 34.615 15.42 11.94 38.26 2.67
1958 1987 7.174107 AGGCAATGCAACTAATTTAGTCATT 57.826 32.000 7.79 11.99 38.26 2.57
1959 1988 6.780457 AGGCAATGCAACTAATTTAGTCAT 57.220 33.333 7.79 7.13 38.26 3.06
2048 2077 5.852738 AAGATCAGAACATTTCTCGTGTG 57.147 39.130 0.00 0.00 38.11 3.82
2049 2078 8.553459 AATTAAGATCAGAACATTTCTCGTGT 57.447 30.769 0.00 0.00 38.11 4.49
2125 2155 1.597663 ACTGCACAAAGTAGCAACGAC 59.402 47.619 0.00 0.00 40.73 4.34
2133 2163 0.470766 ACCGGGAACTGCACAAAGTA 59.529 50.000 6.32 0.00 0.00 2.24
2253 2283 6.402226 CGCTAAACTCTGATAACTTTGGAACC 60.402 42.308 0.00 0.00 0.00 3.62
2264 2294 6.222038 AGAAATGGACGCTAAACTCTGATA 57.778 37.500 0.00 0.00 0.00 2.15
2285 2315 1.616865 CCCTCAGGTCACGTACAAAGA 59.383 52.381 0.00 0.00 0.00 2.52
2332 2362 6.432581 TCTAGGACAAAACTAGAGCCTGATA 58.567 40.000 0.00 0.00 41.34 2.15
2345 2375 5.136828 TGGCTGACAAAATCTAGGACAAAA 58.863 37.500 0.00 0.00 0.00 2.44
2346 2376 4.724399 TGGCTGACAAAATCTAGGACAAA 58.276 39.130 0.00 0.00 0.00 2.83
2347 2377 4.041567 TCTGGCTGACAAAATCTAGGACAA 59.958 41.667 0.00 0.00 0.00 3.18
2348 2378 3.582647 TCTGGCTGACAAAATCTAGGACA 59.417 43.478 0.00 0.00 0.00 4.02
2349 2379 4.081420 TCTCTGGCTGACAAAATCTAGGAC 60.081 45.833 0.00 0.00 0.00 3.85
2350 2380 4.096681 TCTCTGGCTGACAAAATCTAGGA 58.903 43.478 0.00 0.00 0.00 2.94
2351 2381 4.478206 TCTCTGGCTGACAAAATCTAGG 57.522 45.455 0.00 0.00 0.00 3.02
2352 2382 6.596888 TCATTTCTCTGGCTGACAAAATCTAG 59.403 38.462 0.00 0.00 0.00 2.43
2353 2383 6.475504 TCATTTCTCTGGCTGACAAAATCTA 58.524 36.000 0.00 0.00 0.00 1.98
2354 2384 5.319453 TCATTTCTCTGGCTGACAAAATCT 58.681 37.500 0.00 0.00 0.00 2.40
2355 2385 5.633830 TCATTTCTCTGGCTGACAAAATC 57.366 39.130 0.00 0.00 0.00 2.17
2356 2386 6.395629 CAATCATTTCTCTGGCTGACAAAAT 58.604 36.000 0.00 2.62 0.00 1.82
2357 2387 5.279106 CCAATCATTTCTCTGGCTGACAAAA 60.279 40.000 0.00 0.57 0.00 2.44
2358 2388 4.219070 CCAATCATTTCTCTGGCTGACAAA 59.781 41.667 0.00 0.00 0.00 2.83
2359 2389 3.760151 CCAATCATTTCTCTGGCTGACAA 59.240 43.478 0.00 0.00 0.00 3.18
2360 2390 3.245016 ACCAATCATTTCTCTGGCTGACA 60.245 43.478 0.00 0.00 31.74 3.58
2361 2391 3.350833 ACCAATCATTTCTCTGGCTGAC 58.649 45.455 0.00 0.00 31.74 3.51
2362 2392 3.726557 ACCAATCATTTCTCTGGCTGA 57.273 42.857 0.00 0.00 31.74 4.26
2363 2393 4.219070 TGAAACCAATCATTTCTCTGGCTG 59.781 41.667 0.00 0.00 37.05 4.85
2364 2394 4.219288 GTGAAACCAATCATTTCTCTGGCT 59.781 41.667 0.00 0.00 37.05 4.75
2365 2395 4.219288 AGTGAAACCAATCATTTCTCTGGC 59.781 41.667 2.27 0.00 38.07 4.85
2366 2396 5.972107 AGTGAAACCAATCATTTCTCTGG 57.028 39.130 2.27 0.00 38.07 3.86
2367 2397 7.678947 ACTAGTGAAACCAATCATTTCTCTG 57.321 36.000 0.00 5.50 39.19 3.35
2368 2398 8.697507 AAACTAGTGAAACCAATCATTTCTCT 57.302 30.769 0.00 7.10 40.85 3.10
2369 2399 9.185192 CAAAACTAGTGAAACCAATCATTTCTC 57.815 33.333 0.00 0.00 37.80 2.87
2370 2400 8.912988 TCAAAACTAGTGAAACCAATCATTTCT 58.087 29.630 0.00 0.00 37.80 2.52
2371 2401 9.185192 CTCAAAACTAGTGAAACCAATCATTTC 57.815 33.333 0.00 0.00 37.80 2.17
2372 2402 8.695456 ACTCAAAACTAGTGAAACCAATCATTT 58.305 29.630 0.00 0.00 37.80 2.32
2373 2403 8.237811 ACTCAAAACTAGTGAAACCAATCATT 57.762 30.769 0.00 0.00 37.80 2.57
2374 2404 7.823745 ACTCAAAACTAGTGAAACCAATCAT 57.176 32.000 0.00 0.00 37.80 2.45
2375 2405 8.208224 TCTACTCAAAACTAGTGAAACCAATCA 58.792 33.333 0.00 0.00 37.80 2.57
2376 2406 8.603242 TCTACTCAAAACTAGTGAAACCAATC 57.397 34.615 0.00 0.00 37.80 2.67
2377 2407 8.429641 TCTCTACTCAAAACTAGTGAAACCAAT 58.570 33.333 0.00 0.00 37.80 3.16
2378 2408 7.788026 TCTCTACTCAAAACTAGTGAAACCAA 58.212 34.615 0.00 0.00 37.80 3.67
2379 2409 7.356089 TCTCTACTCAAAACTAGTGAAACCA 57.644 36.000 0.00 0.00 37.80 3.67
2380 2410 9.924650 TTATCTCTACTCAAAACTAGTGAAACC 57.075 33.333 0.00 0.00 37.80 3.27
2388 2418 9.174166 GGGCAAATTTATCTCTACTCAAAACTA 57.826 33.333 0.00 0.00 0.00 2.24
2389 2419 7.890655 AGGGCAAATTTATCTCTACTCAAAACT 59.109 33.333 0.00 0.00 0.00 2.66
2390 2420 8.056407 AGGGCAAATTTATCTCTACTCAAAAC 57.944 34.615 0.00 0.00 0.00 2.43
2391 2421 8.650143 AAGGGCAAATTTATCTCTACTCAAAA 57.350 30.769 0.00 0.00 0.00 2.44
2392 2422 8.650143 AAAGGGCAAATTTATCTCTACTCAAA 57.350 30.769 0.00 0.00 0.00 2.69
2393 2423 9.920946 ATAAAGGGCAAATTTATCTCTACTCAA 57.079 29.630 0.00 0.00 28.92 3.02
2394 2424 9.920946 AATAAAGGGCAAATTTATCTCTACTCA 57.079 29.630 0.00 0.00 32.90 3.41
2396 2426 9.057089 CGAATAAAGGGCAAATTTATCTCTACT 57.943 33.333 0.00 0.00 32.90 2.57
2397 2427 7.803659 GCGAATAAAGGGCAAATTTATCTCTAC 59.196 37.037 0.00 0.00 32.90 2.59
2398 2428 7.719633 AGCGAATAAAGGGCAAATTTATCTCTA 59.280 33.333 0.00 0.00 32.90 2.43
2399 2429 6.547510 AGCGAATAAAGGGCAAATTTATCTCT 59.452 34.615 0.00 0.00 32.90 3.10
2400 2430 6.739112 AGCGAATAAAGGGCAAATTTATCTC 58.261 36.000 0.00 0.00 32.90 2.75
2401 2431 6.547510 AGAGCGAATAAAGGGCAAATTTATCT 59.452 34.615 0.00 0.00 32.90 1.98
2402 2432 6.739112 AGAGCGAATAAAGGGCAAATTTATC 58.261 36.000 0.00 0.00 32.90 1.75
2403 2433 6.715347 AGAGCGAATAAAGGGCAAATTTAT 57.285 33.333 0.00 0.00 34.97 1.40
2404 2434 7.633193 TTAGAGCGAATAAAGGGCAAATTTA 57.367 32.000 0.00 0.00 0.00 1.40
2405 2435 6.524101 TTAGAGCGAATAAAGGGCAAATTT 57.476 33.333 0.00 0.00 0.00 1.82
2406 2436 6.715347 ATTAGAGCGAATAAAGGGCAAATT 57.285 33.333 0.00 0.00 0.00 1.82
2407 2437 6.715347 AATTAGAGCGAATAAAGGGCAAAT 57.285 33.333 0.00 0.00 0.00 2.32
2408 2438 6.524101 AAATTAGAGCGAATAAAGGGCAAA 57.476 33.333 0.00 0.00 0.00 3.68
2409 2439 6.071616 ACAAAATTAGAGCGAATAAAGGGCAA 60.072 34.615 0.00 0.00 0.00 4.52
2410 2440 5.417580 ACAAAATTAGAGCGAATAAAGGGCA 59.582 36.000 0.00 0.00 0.00 5.36
2411 2441 5.891451 ACAAAATTAGAGCGAATAAAGGGC 58.109 37.500 0.00 0.00 0.00 5.19
2412 2442 6.318900 AGGACAAAATTAGAGCGAATAAAGGG 59.681 38.462 0.00 0.00 0.00 3.95
2413 2443 7.321745 AGGACAAAATTAGAGCGAATAAAGG 57.678 36.000 0.00 0.00 0.00 3.11
2414 2444 9.314321 TCTAGGACAAAATTAGAGCGAATAAAG 57.686 33.333 0.00 0.00 0.00 1.85
2415 2445 9.832445 ATCTAGGACAAAATTAGAGCGAATAAA 57.168 29.630 0.00 0.00 0.00 1.40
2416 2446 9.832445 AATCTAGGACAAAATTAGAGCGAATAA 57.168 29.630 0.00 0.00 0.00 1.40
2417 2447 9.832445 AAATCTAGGACAAAATTAGAGCGAATA 57.168 29.630 0.00 0.00 0.00 1.75
2418 2448 8.738645 AAATCTAGGACAAAATTAGAGCGAAT 57.261 30.769 0.00 0.00 0.00 3.34
2419 2449 8.450964 CAAAATCTAGGACAAAATTAGAGCGAA 58.549 33.333 0.00 0.00 0.00 4.70
2420 2450 7.606456 ACAAAATCTAGGACAAAATTAGAGCGA 59.394 33.333 0.00 0.00 0.00 4.93
2421 2451 7.752695 ACAAAATCTAGGACAAAATTAGAGCG 58.247 34.615 0.00 0.00 0.00 5.03
2422 2452 8.730680 TGACAAAATCTAGGACAAAATTAGAGC 58.269 33.333 0.00 0.00 0.00 4.09
2424 2454 8.730680 GCTGACAAAATCTAGGACAAAATTAGA 58.269 33.333 0.00 0.00 0.00 2.10
2425 2455 7.970614 GGCTGACAAAATCTAGGACAAAATTAG 59.029 37.037 0.00 0.00 0.00 1.73
2426 2456 7.450014 TGGCTGACAAAATCTAGGACAAAATTA 59.550 33.333 0.00 0.00 0.00 1.40
2427 2457 6.267471 TGGCTGACAAAATCTAGGACAAAATT 59.733 34.615 0.00 0.00 0.00 1.82
2428 2458 5.774690 TGGCTGACAAAATCTAGGACAAAAT 59.225 36.000 0.00 0.00 0.00 1.82
2578 2608 1.877443 CAGTGTCCTAAAACAACCCGG 59.123 52.381 0.00 0.00 0.00 5.73
2628 2658 4.716784 TGCACTGTTGGTAGAGGAGAATAT 59.283 41.667 0.00 0.00 0.00 1.28
2714 2744 5.950758 AGTAACGTGCCAAATCATACAAA 57.049 34.783 0.00 0.00 0.00 2.83
2973 3003 6.875195 CCACAATAAGCACATTCCAGAAAAAT 59.125 34.615 0.00 0.00 0.00 1.82
2976 3006 5.076182 TCCACAATAAGCACATTCCAGAAA 58.924 37.500 0.00 0.00 0.00 2.52
3077 3107 4.439700 CCAAATCCAATCTCATGTGCAGTC 60.440 45.833 0.00 0.00 0.00 3.51
3078 3108 3.446161 CCAAATCCAATCTCATGTGCAGT 59.554 43.478 0.00 0.00 0.00 4.40
3164 3194 8.567285 AAATATCTTCCAGATCTTTCGTTGTT 57.433 30.769 0.00 0.00 36.20 2.83
3273 3303 5.780282 TGAATGTAGTGGATAGACATAGGGG 59.220 44.000 0.00 0.00 33.48 4.79
3366 3399 2.555782 CACCATTGTGGCGTGTCG 59.444 61.111 0.00 0.00 42.67 4.35
3377 3410 2.021457 GCACGGGCTATTAACACCATT 58.979 47.619 0.00 0.00 36.96 3.16
3451 3484 5.278364 GCTAGGTATGACGTTATAGCACTGT 60.278 44.000 25.44 11.64 36.50 3.55
3464 3497 4.130286 AGACTTTGCTGCTAGGTATGAC 57.870 45.455 0.00 0.00 0.00 3.06
3499 3532 6.140303 TGTAAACAAGGCGTATCCTAGTAG 57.860 41.667 0.00 0.00 46.94 2.57
3501 3534 5.410355 TTGTAAACAAGGCGTATCCTAGT 57.590 39.130 0.00 0.00 46.94 2.57
3548 3581 5.393678 GGAATAAAAGCCAATAACCGCTGAA 60.394 40.000 0.00 0.00 34.94 3.02
3563 3596 6.868339 CCCTGTTGCTTACAAAGGAATAAAAG 59.132 38.462 0.00 0.00 41.00 2.27
3614 3647 6.409234 CCCTTAACTAATTGCCTGGTATCTGA 60.409 42.308 0.00 0.00 0.00 3.27
3653 3686 7.392234 TGTCAACATTGAATTTTGATCAACG 57.608 32.000 7.89 0.00 39.43 4.10
3713 3747 5.534207 TCCCCATGAATATGCACATTTTC 57.466 39.130 0.00 6.81 32.79 2.29
3771 3805 6.569179 TTGTCAACTGGAAAGTTAATAGCC 57.431 37.500 0.00 0.00 0.00 3.93
3842 3876 1.136147 GAACGCAGCAGCCTGAATG 59.864 57.895 0.00 0.00 41.77 2.67
3843 3877 2.042831 GGAACGCAGCAGCCTGAAT 61.043 57.895 0.00 0.00 41.77 2.57
3856 3890 8.934507 AAGAAGATAAGACTGAATTAGGAACG 57.065 34.615 0.00 0.00 0.00 3.95
3958 3992 1.936547 CGATTGAGAGCACCTAAAGCC 59.063 52.381 0.00 0.00 0.00 4.35
3978 4013 2.612221 GGTGGCCTATAACTATCACCGC 60.612 54.545 3.32 0.00 35.89 5.68
4061 4096 3.317603 AAATTGCCCCTTGATGTTTCG 57.682 42.857 0.00 0.00 0.00 3.46
4107 4142 0.820482 AACACGTGGTGGGCCTTTAC 60.820 55.000 21.57 0.00 37.94 2.01
4168 4205 4.739046 AGAGCAGACACAGAAATTTTCG 57.261 40.909 3.57 2.27 34.02 3.46
4200 4237 8.918658 TGACAAGAACTATATCAACAAACGTAC 58.081 33.333 0.00 0.00 0.00 3.67
4225 4267 5.048083 TGCTAACCTGCAAAGGTAAAAGATG 60.048 40.000 0.00 0.00 42.20 2.90
4226 4268 5.048013 GTGCTAACCTGCAAAGGTAAAAGAT 60.048 40.000 0.00 0.00 45.12 2.40
4228 4270 4.546570 GTGCTAACCTGCAAAGGTAAAAG 58.453 43.478 0.00 0.00 45.12 2.27
4233 4275 0.889186 CCGTGCTAACCTGCAAAGGT 60.889 55.000 0.00 0.00 45.12 3.50
4251 4293 1.512734 CATTCGCTTGTTGCTCGCC 60.513 57.895 0.00 0.00 40.11 5.54
4461 4503 1.214589 GTCCCTGTTTAGCGCGAGA 59.785 57.895 12.10 0.00 0.00 4.04
4550 4592 4.097135 CGTCTATGAGTGATGAAGACAGGT 59.903 45.833 0.00 0.00 37.09 4.00
4554 4596 4.640789 ACCGTCTATGAGTGATGAAGAC 57.359 45.455 0.00 0.00 34.55 3.01
4732 4777 1.209261 AGCAAGGAAGAAGGCTAGCTC 59.791 52.381 15.72 5.17 34.25 4.09
4733 4778 1.209261 GAGCAAGGAAGAAGGCTAGCT 59.791 52.381 15.72 0.00 36.59 3.32
4734 4779 1.662517 GAGCAAGGAAGAAGGCTAGC 58.337 55.000 6.04 6.04 36.59 3.42
4735 4780 1.933247 CGAGCAAGGAAGAAGGCTAG 58.067 55.000 0.00 0.00 36.59 3.42
4779 4824 2.628106 GCATCATGCGTAGGTGCG 59.372 61.111 0.00 0.00 37.81 5.34
4828 4873 2.222819 GGATCACGATGCTGAAAACGAC 60.223 50.000 0.00 0.00 0.00 4.34
4831 4876 3.002791 TCTGGATCACGATGCTGAAAAC 58.997 45.455 5.80 0.00 35.05 2.43
4998 5047 2.094762 AGTTGGTAGGTTAAGCAGCG 57.905 50.000 7.52 0.00 33.86 5.18
5017 5066 7.485913 GTCGTTTTGGATCTCAATTACTACGTA 59.514 37.037 0.00 0.00 34.98 3.57
5018 5067 6.309737 GTCGTTTTGGATCTCAATTACTACGT 59.690 38.462 0.00 0.00 34.98 3.57
5019 5068 6.309494 TGTCGTTTTGGATCTCAATTACTACG 59.691 38.462 0.00 0.00 34.98 3.51
5020 5069 7.591006 TGTCGTTTTGGATCTCAATTACTAC 57.409 36.000 0.00 1.57 34.98 2.73
5113 5168 4.018960 ACTGACCAATCACTTAGGAGCAAT 60.019 41.667 0.00 0.00 0.00 3.56
5116 5171 3.265791 CACTGACCAATCACTTAGGAGC 58.734 50.000 0.00 0.00 0.00 4.70
5149 5204 2.039951 TCTCCCGTTACCCCAGGG 59.960 66.667 0.00 0.00 46.40 4.45
5412 5469 1.159285 CCATGCATCTGTGTTCGTGT 58.841 50.000 0.00 0.00 0.00 4.49
5543 5615 3.432051 ATACTCGCTGCTGACGGCC 62.432 63.158 3.22 0.00 46.10 6.13
5561 5633 1.311859 CCAACTTCTTCTGCACAGCA 58.688 50.000 0.00 0.00 36.92 4.41
5620 5692 0.867753 GCGAATCGAGCGTGTCTGAT 60.868 55.000 6.91 0.00 0.00 2.90
5628 5700 2.697425 CAACCAGCGAATCGAGCG 59.303 61.111 6.91 6.14 40.04 5.03
5629 5701 2.401195 GCAACCAGCGAATCGAGC 59.599 61.111 6.91 0.00 0.00 5.03
5665 5737 4.813161 TCGTTAGTTAGATCGATCGGTCTT 59.187 41.667 33.90 19.74 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.