Multiple sequence alignment - TraesCS7A01G263100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G263100 chr7A 100.000 5473 0 0 1 5473 260029186 260034658 0.000000e+00 10107.0
1 TraesCS7A01G263100 chr7D 91.392 2277 101 38 360 2600 244465393 244467610 0.000000e+00 3031.0
2 TraesCS7A01G263100 chr7D 88.307 1223 59 39 2679 3838 244467603 244468804 0.000000e+00 1389.0
3 TraesCS7A01G263100 chr7D 89.374 1054 65 19 3823 4860 244468819 244469841 0.000000e+00 1282.0
4 TraesCS7A01G263100 chr7D 94.582 443 22 2 5031 5473 244483696 244484136 0.000000e+00 684.0
5 TraesCS7A01G263100 chr7D 88.401 319 27 10 3 318 15395268 15395579 5.180000e-100 375.0
6 TraesCS7A01G263100 chr7D 88.535 314 29 3 3 312 26978883 26979193 1.860000e-99 374.0
7 TraesCS7A01G263100 chr7D 91.720 157 9 4 4863 5016 244483564 244483719 1.190000e-51 215.0
8 TraesCS7A01G263100 chr7D 88.372 86 8 1 2598 2683 601909795 601909878 9.700000e-18 102.0
9 TraesCS7A01G263100 chr7B 90.522 1857 74 41 364 2192 219648147 219649929 0.000000e+00 2361.0
10 TraesCS7A01G263100 chr7B 90.040 1506 69 39 3788 5266 219651761 219653212 0.000000e+00 1875.0
11 TraesCS7A01G263100 chr7B 88.305 1180 42 30 2682 3796 219650442 219651590 0.000000e+00 1327.0
12 TraesCS7A01G263100 chr7B 88.725 408 22 11 2201 2602 219650053 219650442 1.380000e-130 477.0
13 TraesCS7A01G263100 chr7B 87.850 321 32 6 1 318 68833836 68833520 2.410000e-98 370.0
14 TraesCS7A01G263100 chr6B 88.852 305 27 4 17 318 184628442 184628142 8.660000e-98 368.0
15 TraesCS7A01G263100 chr6B 89.412 85 9 0 2599 2683 236570742 236570826 2.080000e-19 108.0
16 TraesCS7A01G263100 chr6B 97.143 35 1 0 2598 2632 692548947 692548913 5.920000e-05 60.2
17 TraesCS7A01G263100 chr6D 88.254 315 25 8 3 313 358092071 358092377 3.120000e-97 366.0
18 TraesCS7A01G263100 chr6D 88.179 313 27 6 3 312 5088940 5088635 1.120000e-96 364.0
19 TraesCS7A01G263100 chr6D 87.898 314 28 4 3 313 346460632 346460938 1.450000e-95 361.0
20 TraesCS7A01G263100 chr5D 88.013 317 28 8 3 316 39062156 39061847 3.120000e-97 366.0
21 TraesCS7A01G263100 chr1B 87.898 314 30 8 3 313 317432874 317432566 4.030000e-96 363.0
22 TraesCS7A01G263100 chr2D 89.888 89 8 1 2596 2683 317889879 317889791 4.480000e-21 113.0
23 TraesCS7A01G263100 chr2D 89.412 85 9 0 2599 2683 133249270 133249186 2.080000e-19 108.0
24 TraesCS7A01G263100 chr2D 92.308 39 1 2 1845 1881 417544310 417544348 3.000000e-03 54.7
25 TraesCS7A01G263100 chr3B 89.011 91 9 1 2594 2683 550797883 550797973 1.610000e-20 111.0
26 TraesCS7A01G263100 chr2B 96.875 32 1 0 1850 1881 489419249 489419280 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G263100 chr7A 260029186 260034658 5472 False 10107.000000 10107 100.000 1 5473 1 chr7A.!!$F1 5472
1 TraesCS7A01G263100 chr7D 244465393 244469841 4448 False 1900.666667 3031 89.691 360 4860 3 chr7D.!!$F4 4500
2 TraesCS7A01G263100 chr7D 244483564 244484136 572 False 449.500000 684 93.151 4863 5473 2 chr7D.!!$F5 610
3 TraesCS7A01G263100 chr7B 219648147 219653212 5065 False 1510.000000 2361 89.398 364 5266 4 chr7B.!!$F1 4902

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
222 223 0.163788 CGCTGACCATCGACAACAAC 59.836 55.0 0.00 0.00 0.00 3.32 F
1047 1068 0.106217 CCCTCTCCCTCTCTCTGTCC 60.106 65.0 0.00 0.00 0.00 4.02 F
1792 1819 0.321653 GGCGTCAAGAAGTCCATGGT 60.322 55.0 12.58 0.00 0.00 3.55 F
2502 2678 1.302366 ACTCACATATACGGCGTCGA 58.698 50.0 20.03 5.92 40.11 4.20 F
4153 4623 0.588233 CGATCATCGCAACTTGCAGC 60.588 55.0 14.10 0.00 45.36 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 1617 0.307760 CGAGTCAAACGGCAGCTTTT 59.692 50.0 0.0 0.0 0.0 2.27 R
3043 3233 0.179108 GTTGAGGGCTAGGCTACGTG 60.179 60.0 16.8 0.0 0.0 4.49 R
3237 3434 0.457166 CGCAGTTGGACCGTCGATAA 60.457 55.0 0.0 0.0 0.0 1.75 R
4169 4639 0.322008 CCACTCTTCAGTTCCAGCCC 60.322 60.0 0.0 0.0 0.0 5.19 R
5147 5643 0.102844 TGGGCGTATGTAAGCGGTAC 59.897 55.0 0.0 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.424711 GCTGCCGGGAATCCCACA 62.425 66.667 19.81 14.53 45.83 4.17
35 36 2.438434 CTGCCGGGAATCCCACAC 60.438 66.667 19.81 7.20 45.83 3.82
36 37 3.995506 CTGCCGGGAATCCCACACC 62.996 68.421 19.81 3.43 45.83 4.16
37 38 4.815108 GCCGGGAATCCCACACCC 62.815 72.222 19.81 0.00 45.83 4.61
38 39 3.334891 CCGGGAATCCCACACCCA 61.335 66.667 19.81 0.00 45.83 4.51
39 40 2.689691 CCGGGAATCCCACACCCAT 61.690 63.158 19.81 0.00 45.83 4.00
40 41 1.453745 CGGGAATCCCACACCCATG 60.454 63.158 19.81 0.00 45.83 3.66
41 42 1.076044 GGGAATCCCACACCCATGG 60.076 63.158 14.67 4.14 44.65 3.66
42 43 1.580066 GGGAATCCCACACCCATGGA 61.580 60.000 15.22 0.00 44.65 3.41
43 44 0.557729 GGAATCCCACACCCATGGAT 59.442 55.000 15.22 0.00 43.02 3.41
44 45 1.479389 GGAATCCCACACCCATGGATC 60.479 57.143 15.22 0.00 43.02 3.36
45 46 1.496429 GAATCCCACACCCATGGATCT 59.504 52.381 15.22 0.00 43.02 2.75
46 47 0.848735 ATCCCACACCCATGGATCTG 59.151 55.000 15.22 7.90 43.02 2.90
47 48 1.228228 CCCACACCCATGGATCTGG 59.772 63.158 15.22 13.45 43.02 3.86
94 95 4.530857 CTCCGGGATCCGCCACAC 62.531 72.222 5.45 0.00 46.86 3.82
98 99 4.832608 GGGATCCGCCACACCGTC 62.833 72.222 5.45 0.00 38.95 4.79
100 101 4.124351 GATCCGCCACACCGTCGA 62.124 66.667 0.00 0.00 0.00 4.20
101 102 4.129737 ATCCGCCACACCGTCGAG 62.130 66.667 0.00 0.00 0.00 4.04
103 104 4.778415 CCGCCACACCGTCGAGAG 62.778 72.222 0.00 0.00 0.00 3.20
104 105 4.778415 CGCCACACCGTCGAGAGG 62.778 72.222 5.39 5.39 0.00 3.69
105 106 4.436998 GCCACACCGTCGAGAGGG 62.437 72.222 9.98 9.98 41.83 4.30
106 107 4.436998 CCACACCGTCGAGAGGGC 62.437 72.222 11.32 0.00 39.85 5.19
107 108 4.436998 CACACCGTCGAGAGGGCC 62.437 72.222 11.32 0.00 39.85 5.80
126 127 4.530857 CACCCCGCGGATCAGGAC 62.531 72.222 30.73 0.00 0.00 3.85
154 155 4.286320 CGGATCCGGAAGCGGGAG 62.286 72.222 26.95 0.00 36.35 4.30
155 156 3.930012 GGATCCGGAAGCGGGAGG 61.930 72.222 9.01 0.00 36.35 4.30
156 157 2.838225 GATCCGGAAGCGGGAGGA 60.838 66.667 9.01 0.00 36.35 3.71
157 158 2.840102 ATCCGGAAGCGGGAGGAG 60.840 66.667 9.01 0.00 36.35 3.69
158 159 3.375443 ATCCGGAAGCGGGAGGAGA 62.375 63.158 9.01 0.00 36.35 3.71
159 160 2.873557 ATCCGGAAGCGGGAGGAGAA 62.874 60.000 9.01 0.00 36.35 2.87
160 161 2.496817 CGGAAGCGGGAGGAGAAG 59.503 66.667 0.00 0.00 0.00 2.85
161 162 2.052690 CGGAAGCGGGAGGAGAAGA 61.053 63.158 0.00 0.00 0.00 2.87
162 163 1.819905 GGAAGCGGGAGGAGAAGAG 59.180 63.158 0.00 0.00 0.00 2.85
163 164 0.684805 GGAAGCGGGAGGAGAAGAGA 60.685 60.000 0.00 0.00 0.00 3.10
164 165 0.458260 GAAGCGGGAGGAGAAGAGAC 59.542 60.000 0.00 0.00 0.00 3.36
165 166 0.973496 AAGCGGGAGGAGAAGAGACC 60.973 60.000 0.00 0.00 0.00 3.85
166 167 2.428085 GCGGGAGGAGAAGAGACCC 61.428 68.421 0.00 0.00 37.42 4.46
167 168 1.308326 CGGGAGGAGAAGAGACCCT 59.692 63.158 0.00 0.00 38.51 4.34
168 169 0.753848 CGGGAGGAGAAGAGACCCTC 60.754 65.000 0.00 0.00 44.32 4.30
172 173 3.217321 GGAGAAGAGACCCTCCTCC 57.783 63.158 0.00 0.00 44.23 4.30
173 174 0.753848 GGAGAAGAGACCCTCCTCCG 60.754 65.000 0.00 0.00 44.23 4.63
174 175 1.380650 AGAAGAGACCCTCCTCCGC 60.381 63.158 0.00 0.00 33.76 5.54
175 176 2.364448 AAGAGACCCTCCTCCGCC 60.364 66.667 0.00 0.00 33.76 6.13
176 177 4.824515 AGAGACCCTCCTCCGCCG 62.825 72.222 0.00 0.00 33.76 6.46
217 218 4.794439 CGGCGCTGACCATCGACA 62.794 66.667 11.90 0.00 32.26 4.35
218 219 2.434185 GGCGCTGACCATCGACAA 60.434 61.111 7.64 0.00 33.16 3.18
219 220 2.740714 GGCGCTGACCATCGACAAC 61.741 63.158 7.64 0.00 33.16 3.32
220 221 2.027073 GCGCTGACCATCGACAACA 61.027 57.895 0.00 0.00 0.00 3.33
221 222 1.565156 GCGCTGACCATCGACAACAA 61.565 55.000 0.00 0.00 0.00 2.83
222 223 0.163788 CGCTGACCATCGACAACAAC 59.836 55.000 0.00 0.00 0.00 3.32
223 224 0.163788 GCTGACCATCGACAACAACG 59.836 55.000 0.00 0.00 0.00 4.10
224 225 0.790207 CTGACCATCGACAACAACGG 59.210 55.000 0.00 0.00 0.00 4.44
225 226 0.389757 TGACCATCGACAACAACGGA 59.610 50.000 0.00 0.00 0.00 4.69
226 227 1.068474 GACCATCGACAACAACGGAG 58.932 55.000 0.00 0.00 0.00 4.63
227 228 0.320421 ACCATCGACAACAACGGAGG 60.320 55.000 0.00 0.00 0.00 4.30
228 229 1.019278 CCATCGACAACAACGGAGGG 61.019 60.000 0.00 0.00 0.00 4.30
229 230 1.019278 CATCGACAACAACGGAGGGG 61.019 60.000 0.00 0.00 0.00 4.79
230 231 1.189524 ATCGACAACAACGGAGGGGA 61.190 55.000 0.00 0.00 0.00 4.81
231 232 1.070105 CGACAACAACGGAGGGGAA 59.930 57.895 0.00 0.00 0.00 3.97
232 233 0.949105 CGACAACAACGGAGGGGAAG 60.949 60.000 0.00 0.00 0.00 3.46
233 234 0.395312 GACAACAACGGAGGGGAAGA 59.605 55.000 0.00 0.00 0.00 2.87
234 235 0.841289 ACAACAACGGAGGGGAAGAA 59.159 50.000 0.00 0.00 0.00 2.52
235 236 1.202770 ACAACAACGGAGGGGAAGAAG 60.203 52.381 0.00 0.00 0.00 2.85
236 237 0.400594 AACAACGGAGGGGAAGAAGG 59.599 55.000 0.00 0.00 0.00 3.46
237 238 1.299976 CAACGGAGGGGAAGAAGGG 59.700 63.158 0.00 0.00 0.00 3.95
238 239 2.603652 AACGGAGGGGAAGAAGGGC 61.604 63.158 0.00 0.00 0.00 5.19
239 240 4.162690 CGGAGGGGAAGAAGGGCG 62.163 72.222 0.00 0.00 0.00 6.13
240 241 3.009714 GGAGGGGAAGAAGGGCGT 61.010 66.667 0.00 0.00 0.00 5.68
241 242 2.603652 GGAGGGGAAGAAGGGCGTT 61.604 63.158 0.00 0.00 0.00 4.84
242 243 1.377333 GAGGGGAAGAAGGGCGTTG 60.377 63.158 0.00 0.00 0.00 4.10
243 244 2.361230 GGGGAAGAAGGGCGTTGG 60.361 66.667 0.00 0.00 0.00 3.77
244 245 2.754375 GGGAAGAAGGGCGTTGGA 59.246 61.111 0.00 0.00 0.00 3.53
245 246 1.377333 GGGAAGAAGGGCGTTGGAG 60.377 63.158 0.00 0.00 0.00 3.86
246 247 1.377333 GGAAGAAGGGCGTTGGAGG 60.377 63.158 0.00 0.00 0.00 4.30
247 248 1.377333 GAAGAAGGGCGTTGGAGGG 60.377 63.158 0.00 0.00 0.00 4.30
248 249 2.125766 GAAGAAGGGCGTTGGAGGGT 62.126 60.000 0.00 0.00 0.00 4.34
249 250 0.838987 AAGAAGGGCGTTGGAGGGTA 60.839 55.000 0.00 0.00 0.00 3.69
250 251 1.078637 GAAGGGCGTTGGAGGGTAC 60.079 63.158 0.00 0.00 0.00 3.34
251 252 1.538135 AAGGGCGTTGGAGGGTACT 60.538 57.895 0.00 0.00 0.00 2.73
252 253 0.252375 AAGGGCGTTGGAGGGTACTA 60.252 55.000 0.00 0.00 0.00 1.82
253 254 0.686769 AGGGCGTTGGAGGGTACTAG 60.687 60.000 0.00 0.00 0.00 2.57
254 255 1.683418 GGGCGTTGGAGGGTACTAGG 61.683 65.000 0.00 0.00 0.00 3.02
255 256 1.143401 GCGTTGGAGGGTACTAGGC 59.857 63.158 0.00 0.00 0.00 3.93
256 257 1.436336 CGTTGGAGGGTACTAGGCG 59.564 63.158 0.00 0.00 0.00 5.52
257 258 1.821258 GTTGGAGGGTACTAGGCGG 59.179 63.158 0.00 0.00 0.00 6.13
258 259 2.062177 TTGGAGGGTACTAGGCGGC 61.062 63.158 0.00 0.00 0.00 6.53
259 260 2.123382 GGAGGGTACTAGGCGGCT 60.123 66.667 18.33 18.33 0.00 5.52
260 261 1.761271 GGAGGGTACTAGGCGGCTT 60.761 63.158 19.76 1.63 0.00 4.35
261 262 1.740905 GAGGGTACTAGGCGGCTTC 59.259 63.158 19.76 2.18 0.00 3.86
262 263 2.073037 GAGGGTACTAGGCGGCTTCG 62.073 65.000 19.76 11.77 0.00 3.79
263 264 2.416260 GGTACTAGGCGGCTTCGG 59.584 66.667 19.76 10.72 0.00 4.30
264 265 2.421399 GGTACTAGGCGGCTTCGGT 61.421 63.158 19.76 16.10 0.00 4.69
265 266 1.226888 GTACTAGGCGGCTTCGGTG 60.227 63.158 19.76 5.47 0.00 4.94
266 267 2.420568 TACTAGGCGGCTTCGGTGG 61.421 63.158 19.76 0.00 0.00 4.61
306 307 3.812019 CGGGGGAGACGACGTGAG 61.812 72.222 4.58 0.00 0.00 3.51
307 308 2.360852 GGGGGAGACGACGTGAGA 60.361 66.667 4.58 0.00 0.00 3.27
308 309 2.408241 GGGGGAGACGACGTGAGAG 61.408 68.421 4.58 0.00 0.00 3.20
309 310 2.408241 GGGGAGACGACGTGAGAGG 61.408 68.421 4.58 0.00 0.00 3.69
310 311 2.408241 GGGAGACGACGTGAGAGGG 61.408 68.421 4.58 0.00 0.00 4.30
311 312 1.376942 GGAGACGACGTGAGAGGGA 60.377 63.158 4.58 0.00 0.00 4.20
312 313 1.646624 GGAGACGACGTGAGAGGGAC 61.647 65.000 4.58 0.00 0.00 4.46
313 314 0.954449 GAGACGACGTGAGAGGGACA 60.954 60.000 4.58 0.00 0.00 4.02
314 315 1.209640 GACGACGTGAGAGGGACAC 59.790 63.158 4.58 0.00 35.26 3.67
319 320 2.574399 GTGAGAGGGACACGAGCC 59.426 66.667 0.00 0.00 0.00 4.70
320 321 2.680352 TGAGAGGGACACGAGCCC 60.680 66.667 4.59 4.59 46.40 5.19
325 326 2.363925 GGGACACGAGCCCCTACT 60.364 66.667 0.00 0.00 39.81 2.57
326 327 2.424733 GGGACACGAGCCCCTACTC 61.425 68.421 0.00 0.00 39.81 2.59
333 334 2.877975 GAGCCCCTACTCGTACACA 58.122 57.895 0.00 0.00 0.00 3.72
334 335 1.400737 GAGCCCCTACTCGTACACAT 58.599 55.000 0.00 0.00 0.00 3.21
335 336 1.067212 GAGCCCCTACTCGTACACATG 59.933 57.143 0.00 0.00 0.00 3.21
336 337 1.108776 GCCCCTACTCGTACACATGA 58.891 55.000 0.00 0.00 0.00 3.07
337 338 1.479323 GCCCCTACTCGTACACATGAA 59.521 52.381 0.00 0.00 0.00 2.57
338 339 2.093869 GCCCCTACTCGTACACATGAAA 60.094 50.000 0.00 0.00 0.00 2.69
339 340 3.782046 CCCCTACTCGTACACATGAAAG 58.218 50.000 0.00 0.00 0.00 2.62
340 341 3.430374 CCCCTACTCGTACACATGAAAGG 60.430 52.174 0.00 0.00 0.00 3.11
341 342 3.187700 CCTACTCGTACACATGAAAGGC 58.812 50.000 0.00 0.00 0.00 4.35
342 343 1.710013 ACTCGTACACATGAAAGGCG 58.290 50.000 0.00 0.00 0.00 5.52
343 344 1.271379 ACTCGTACACATGAAAGGCGA 59.729 47.619 0.00 1.99 0.00 5.54
344 345 1.920574 CTCGTACACATGAAAGGCGAG 59.079 52.381 0.00 8.23 38.36 5.03
345 346 1.542472 TCGTACACATGAAAGGCGAGA 59.458 47.619 0.00 0.00 0.00 4.04
346 347 1.920574 CGTACACATGAAAGGCGAGAG 59.079 52.381 0.00 0.00 0.00 3.20
347 348 2.671351 CGTACACATGAAAGGCGAGAGT 60.671 50.000 0.00 0.00 0.00 3.24
348 349 2.086054 ACACATGAAAGGCGAGAGTC 57.914 50.000 0.00 0.00 0.00 3.36
349 350 0.994995 CACATGAAAGGCGAGAGTCG 59.005 55.000 0.00 0.00 43.49 4.18
350 351 0.603569 ACATGAAAGGCGAGAGTCGT 59.396 50.000 0.00 0.00 42.81 4.34
351 352 1.000955 ACATGAAAGGCGAGAGTCGTT 59.999 47.619 0.00 0.00 42.81 3.85
352 353 1.391485 CATGAAAGGCGAGAGTCGTTG 59.609 52.381 0.00 0.00 42.81 4.10
353 354 0.387929 TGAAAGGCGAGAGTCGTTGT 59.612 50.000 0.00 0.00 42.81 3.32
354 355 1.202486 TGAAAGGCGAGAGTCGTTGTT 60.202 47.619 0.00 0.00 42.81 2.83
355 356 1.865340 GAAAGGCGAGAGTCGTTGTTT 59.135 47.619 0.00 0.00 42.81 2.83
356 357 1.949465 AAGGCGAGAGTCGTTGTTTT 58.051 45.000 0.00 0.00 42.81 2.43
357 358 1.949465 AGGCGAGAGTCGTTGTTTTT 58.051 45.000 0.00 0.00 42.81 1.94
358 359 1.865340 AGGCGAGAGTCGTTGTTTTTC 59.135 47.619 0.00 0.00 42.81 2.29
362 363 3.120792 CGAGAGTCGTTGTTTTTCTGGA 58.879 45.455 0.00 0.00 34.72 3.86
374 375 7.497595 GTTGTTTTTCTGGATTTCCCTAAAGT 58.502 34.615 0.00 0.00 35.38 2.66
396 397 1.285078 GGAATTGGTTGAGCCCTAGGT 59.715 52.381 8.29 0.00 36.04 3.08
490 491 5.007332 ACAATTGTTCTACGGTTCAGTGTTC 59.993 40.000 4.92 0.00 0.00 3.18
491 492 2.734670 TGTTCTACGGTTCAGTGTTCG 58.265 47.619 0.00 0.00 0.00 3.95
526 528 4.142513 ACTCGGTAGAATTCTCACGGTAAC 60.143 45.833 23.28 11.32 0.00 2.50
532 534 3.684788 AGAATTCTCACGGTAACACATGC 59.315 43.478 0.88 0.00 0.00 4.06
538 540 1.069296 CACGGTAACACATGCCACAAG 60.069 52.381 0.00 0.00 32.37 3.16
541 543 2.432444 GGTAACACATGCCACAAGCTA 58.568 47.619 0.00 0.00 44.23 3.32
590 594 5.758296 TCCGCAAGTCATGAATTATCCTAAC 59.242 40.000 8.27 0.00 0.00 2.34
604 608 8.753497 AATTATCCTAACCTTCTGTTGGATTC 57.247 34.615 11.50 0.00 41.27 2.52
613 617 4.324099 CCTTCTGTTGGATTCCAGTCATCT 60.324 45.833 5.36 0.00 33.81 2.90
663 668 4.320494 CCAAGGATGAAACTGAAAACCGAG 60.320 45.833 0.00 0.00 0.00 4.63
826 831 4.881850 TCCAGAAGGAATTAATCGAAAGCC 59.118 41.667 0.00 0.00 42.23 4.35
1002 1023 1.857348 CCTTTTCCCCACTCCCCCT 60.857 63.158 0.00 0.00 0.00 4.79
1047 1068 0.106217 CCCTCTCCCTCTCTCTGTCC 60.106 65.000 0.00 0.00 0.00 4.02
1153 1174 2.221906 GACCTGCCCTGCTGCATTTG 62.222 60.000 1.31 0.00 41.16 2.32
1159 1180 1.080093 CCTGCTGCATTTGCCACTG 60.080 57.895 1.31 0.00 41.18 3.66
1174 1195 3.414700 CTGCCGTGCAAGGACGTC 61.415 66.667 23.82 7.13 38.41 4.34
1255 1278 2.344950 CCACTGAGCTGAGCTAGTTTG 58.655 52.381 7.08 2.26 39.88 2.93
1256 1279 2.289320 CCACTGAGCTGAGCTAGTTTGT 60.289 50.000 7.08 0.00 39.88 2.83
1257 1280 2.735663 CACTGAGCTGAGCTAGTTTGTG 59.264 50.000 7.08 8.50 39.88 3.33
1258 1281 1.731160 CTGAGCTGAGCTAGTTTGTGC 59.269 52.381 7.08 0.00 39.88 4.57
1459 1482 1.153208 CTCCCAGCTGCTGTCATCC 60.153 63.158 26.41 0.00 0.00 3.51
1462 1485 2.672908 CAGCTGCTGTCATCCCCA 59.327 61.111 21.21 0.00 0.00 4.96
1464 1487 1.001641 AGCTGCTGTCATCCCCAAC 60.002 57.895 0.00 0.00 0.00 3.77
1527 1550 4.249020 CCACGCACGCAGCACAAA 62.249 61.111 0.00 0.00 46.13 2.83
1528 1551 2.723271 CACGCACGCAGCACAAAG 60.723 61.111 0.00 0.00 46.13 2.77
1529 1552 4.612536 ACGCACGCAGCACAAAGC 62.613 61.111 0.00 0.00 46.13 3.51
1564 1587 2.801162 CCGACGACGACACTGCTG 60.801 66.667 9.28 0.00 42.66 4.41
1574 1597 1.079127 ACACTGCTGGCCATACGAC 60.079 57.895 5.51 0.00 0.00 4.34
1584 1607 2.426381 TGGCCATACGACGTGTTACATA 59.574 45.455 11.56 0.00 0.00 2.29
1588 1614 5.287752 GGCCATACGACGTGTTACATATATG 59.712 44.000 11.56 11.29 0.00 1.78
1591 1617 7.245604 CCATACGACGTGTTACATATATGCTA 58.754 38.462 11.56 2.29 0.00 3.49
1788 1815 1.006571 GTCGGCGTCAAGAAGTCCA 60.007 57.895 6.85 0.00 0.00 4.02
1792 1819 0.321653 GGCGTCAAGAAGTCCATGGT 60.322 55.000 12.58 0.00 0.00 3.55
1793 1820 1.523758 GCGTCAAGAAGTCCATGGTT 58.476 50.000 12.58 0.00 0.00 3.67
2002 2032 4.809673 TCTTACTGCATGTACTGTGTCAG 58.190 43.478 14.84 14.84 37.52 3.51
2053 2101 3.308595 TCTTGTACTTGTTCAACTGCACG 59.691 43.478 0.00 0.00 0.00 5.34
2054 2102 2.623535 TGTACTTGTTCAACTGCACGT 58.376 42.857 0.00 0.00 0.00 4.49
2066 2114 4.380628 GCACGTCTGCACTGCTGC 62.381 66.667 1.98 0.00 43.62 5.25
2086 2134 2.413837 CACCTGTGTGTTAGTAGTGCC 58.586 52.381 0.00 0.00 37.72 5.01
2093 2141 2.299013 TGTGTTAGTAGTGCCACTCCAG 59.701 50.000 0.00 0.00 0.00 3.86
2110 2158 3.454082 CTCCAGTCTCCAATCCTTAGCTT 59.546 47.826 0.00 0.00 0.00 3.74
2111 2159 3.846588 TCCAGTCTCCAATCCTTAGCTTT 59.153 43.478 0.00 0.00 0.00 3.51
2112 2160 3.944015 CCAGTCTCCAATCCTTAGCTTTG 59.056 47.826 0.00 0.00 0.00 2.77
2113 2161 3.944015 CAGTCTCCAATCCTTAGCTTTGG 59.056 47.826 7.67 7.67 41.04 3.28
2114 2162 3.846588 AGTCTCCAATCCTTAGCTTTGGA 59.153 43.478 14.59 14.59 45.00 3.53
2115 2163 4.289672 AGTCTCCAATCCTTAGCTTTGGAA 59.710 41.667 15.82 6.59 46.07 3.53
2163 2211 7.278646 TGCAAAGCATAAACTGATAGAGTACAG 59.721 37.037 0.00 0.00 35.50 2.74
2188 2236 9.726438 AGTTAAGCAAGTACTGATAATTGAAGT 57.274 29.630 0.00 0.00 38.39 3.01
2191 2239 6.846350 AGCAAGTACTGATAATTGAAGTTGC 58.154 36.000 0.00 0.00 38.39 4.17
2192 2240 6.430925 AGCAAGTACTGATAATTGAAGTTGCA 59.569 34.615 13.34 0.00 38.39 4.08
2229 2396 9.830975 AATTTTATGTTTAGGCTTTCACTGTTT 57.169 25.926 0.00 0.00 0.00 2.83
2238 2405 4.460382 AGGCTTTCACTGTTTGTATCCATG 59.540 41.667 0.00 0.00 0.00 3.66
2330 2497 4.339814 GGAGTTCTCACGAATCTCCTGTAT 59.660 45.833 12.38 0.00 40.47 2.29
2399 2569 4.245845 CTAGTTAACTAGCTAGCAGGCC 57.754 50.000 25.64 0.00 39.43 5.19
2412 2582 4.260609 AGGCCGGATCATGCGCAT 62.261 61.111 19.28 19.28 0.00 4.73
2488 2664 6.361748 CGACAGTTACCAACTACTTAACTCAC 59.638 42.308 0.00 0.00 40.46 3.51
2499 2675 4.644103 ACTTAACTCACATATACGGCGT 57.356 40.909 19.64 19.64 0.00 5.68
2500 2676 4.604976 ACTTAACTCACATATACGGCGTC 58.395 43.478 19.21 0.00 0.00 5.19
2501 2677 2.115348 AACTCACATATACGGCGTCG 57.885 50.000 19.21 8.42 43.02 5.12
2502 2678 1.302366 ACTCACATATACGGCGTCGA 58.698 50.000 20.03 5.92 40.11 4.20
2545 2721 6.457392 GCGTAACCTAATTAACCAGCTTAACC 60.457 42.308 0.00 0.00 0.00 2.85
2562 2738 6.263168 AGCTTAACCATGAGGCATACATAAAC 59.737 38.462 0.00 0.00 39.06 2.01
2570 2746 6.048732 TGAGGCATACATAAACTTCACAGA 57.951 37.500 0.00 0.00 0.00 3.41
2589 2765 4.019860 ACAGATGACATAACCACTCTTGCT 60.020 41.667 0.00 0.00 0.00 3.91
2603 2779 7.044798 ACCACTCTTGCTGAGATTAATACTTC 58.955 38.462 12.88 0.00 45.39 3.01
2604 2780 6.481644 CCACTCTTGCTGAGATTAATACTTCC 59.518 42.308 12.88 0.00 45.39 3.46
2605 2781 7.271511 CACTCTTGCTGAGATTAATACTTCCT 58.728 38.462 12.88 0.00 45.39 3.36
2606 2782 7.437862 CACTCTTGCTGAGATTAATACTTCCTC 59.562 40.741 12.88 0.00 45.39 3.71
2607 2783 6.821388 TCTTGCTGAGATTAATACTTCCTCC 58.179 40.000 0.00 0.00 0.00 4.30
2608 2784 5.201713 TGCTGAGATTAATACTTCCTCCG 57.798 43.478 0.00 0.00 0.00 4.63
2609 2785 4.649674 TGCTGAGATTAATACTTCCTCCGT 59.350 41.667 0.00 0.00 0.00 4.69
2610 2786 5.221263 TGCTGAGATTAATACTTCCTCCGTC 60.221 44.000 0.00 0.00 0.00 4.79
2611 2787 5.010213 GCTGAGATTAATACTTCCTCCGTCT 59.990 44.000 0.00 0.00 0.00 4.18
2612 2788 6.636562 TGAGATTAATACTTCCTCCGTCTC 57.363 41.667 0.00 0.00 0.00 3.36
2613 2789 6.127101 TGAGATTAATACTTCCTCCGTCTCA 58.873 40.000 0.00 0.00 37.73 3.27
2614 2790 6.039493 TGAGATTAATACTTCCTCCGTCTCAC 59.961 42.308 0.00 0.00 35.85 3.51
2615 2791 5.892119 AGATTAATACTTCCTCCGTCTCACA 59.108 40.000 0.00 0.00 0.00 3.58
2616 2792 5.988310 TTAATACTTCCTCCGTCTCACAA 57.012 39.130 0.00 0.00 0.00 3.33
2617 2793 6.540438 TTAATACTTCCTCCGTCTCACAAT 57.460 37.500 0.00 0.00 0.00 2.71
2618 2794 7.649533 TTAATACTTCCTCCGTCTCACAATA 57.350 36.000 0.00 0.00 0.00 1.90
2619 2795 6.732896 AATACTTCCTCCGTCTCACAATAT 57.267 37.500 0.00 0.00 0.00 1.28
2620 2796 7.834881 AATACTTCCTCCGTCTCACAATATA 57.165 36.000 0.00 0.00 0.00 0.86
2621 2797 7.834881 ATACTTCCTCCGTCTCACAATATAA 57.165 36.000 0.00 0.00 0.00 0.98
2622 2798 6.150396 ACTTCCTCCGTCTCACAATATAAG 57.850 41.667 0.00 0.00 0.00 1.73
2623 2799 5.892119 ACTTCCTCCGTCTCACAATATAAGA 59.108 40.000 0.00 0.00 0.00 2.10
2624 2800 6.039941 ACTTCCTCCGTCTCACAATATAAGAG 59.960 42.308 0.00 0.00 0.00 2.85
2625 2801 4.278669 TCCTCCGTCTCACAATATAAGAGC 59.721 45.833 0.00 0.00 0.00 4.09
2626 2802 4.222886 CTCCGTCTCACAATATAAGAGCG 58.777 47.826 0.00 0.00 0.00 5.03
2627 2803 3.630769 TCCGTCTCACAATATAAGAGCGT 59.369 43.478 0.00 0.00 31.69 5.07
2628 2804 4.097437 TCCGTCTCACAATATAAGAGCGTT 59.903 41.667 0.00 0.00 31.69 4.84
2629 2805 4.804139 CCGTCTCACAATATAAGAGCGTTT 59.196 41.667 0.00 0.00 31.69 3.60
2630 2806 5.291128 CCGTCTCACAATATAAGAGCGTTTT 59.709 40.000 0.00 0.00 31.69 2.43
2631 2807 6.183360 CCGTCTCACAATATAAGAGCGTTTTT 60.183 38.462 0.00 0.00 31.69 1.94
2632 2808 6.895040 CGTCTCACAATATAAGAGCGTTTTTC 59.105 38.462 0.00 0.00 0.00 2.29
2633 2809 7.411480 CGTCTCACAATATAAGAGCGTTTTTCA 60.411 37.037 0.00 0.00 0.00 2.69
2634 2810 7.688578 GTCTCACAATATAAGAGCGTTTTTCAC 59.311 37.037 0.00 0.00 0.00 3.18
2635 2811 7.386573 TCTCACAATATAAGAGCGTTTTTCACA 59.613 33.333 0.00 0.00 0.00 3.58
2636 2812 7.295201 TCACAATATAAGAGCGTTTTTCACAC 58.705 34.615 0.00 0.00 0.00 3.82
2637 2813 7.172532 TCACAATATAAGAGCGTTTTTCACACT 59.827 33.333 0.00 0.00 0.00 3.55
2638 2814 8.440059 CACAATATAAGAGCGTTTTTCACACTA 58.560 33.333 0.00 0.00 0.00 2.74
2639 2815 8.656849 ACAATATAAGAGCGTTTTTCACACTAG 58.343 33.333 0.00 0.00 0.00 2.57
2640 2816 8.656849 CAATATAAGAGCGTTTTTCACACTAGT 58.343 33.333 0.00 0.00 0.00 2.57
2641 2817 9.865321 AATATAAGAGCGTTTTTCACACTAGTA 57.135 29.630 0.00 0.00 0.00 1.82
2644 2820 7.813852 AAGAGCGTTTTTCACACTAGTATAG 57.186 36.000 0.00 0.00 46.50 1.31
2669 2845 9.982651 AGTATCACAAACGCTCTTATATTATGT 57.017 29.630 0.00 0.00 0.00 2.29
2671 2847 8.887036 ATCACAAACGCTCTTATATTATGTGA 57.113 30.769 7.16 7.16 45.78 3.58
2672 2848 8.126871 TCACAAACGCTCTTATATTATGTGAC 57.873 34.615 0.00 0.00 39.54 3.67
2673 2849 7.223971 TCACAAACGCTCTTATATTATGTGACC 59.776 37.037 0.00 0.00 39.54 4.02
2674 2850 6.200286 ACAAACGCTCTTATATTATGTGACCG 59.800 38.462 0.00 0.00 0.00 4.79
2675 2851 5.700722 ACGCTCTTATATTATGTGACCGA 57.299 39.130 0.00 0.00 0.00 4.69
2676 2852 5.700846 ACGCTCTTATATTATGTGACCGAG 58.299 41.667 0.00 0.00 0.00 4.63
2677 2853 5.096169 CGCTCTTATATTATGTGACCGAGG 58.904 45.833 0.00 0.00 0.00 4.63
2678 2854 5.411781 GCTCTTATATTATGTGACCGAGGG 58.588 45.833 0.00 0.00 0.00 4.30
2679 2855 5.185249 GCTCTTATATTATGTGACCGAGGGA 59.815 44.000 0.00 0.00 0.00 4.20
2680 2856 6.626181 GCTCTTATATTATGTGACCGAGGGAG 60.626 46.154 0.00 0.00 0.00 4.30
2681 2857 6.312529 TCTTATATTATGTGACCGAGGGAGT 58.687 40.000 0.00 0.00 0.00 3.85
2726 2902 6.039941 AGCTAGTTACATAGAGCAGGTAAGTG 59.960 42.308 0.00 0.00 37.56 3.16
2740 2922 6.381420 AGCAGGTAAGTGGCTACATATATAGG 59.619 42.308 2.02 0.00 35.82 2.57
2741 2923 6.380274 GCAGGTAAGTGGCTACATATATAGGA 59.620 42.308 2.02 0.00 0.00 2.94
2742 2924 7.630944 GCAGGTAAGTGGCTACATATATAGGAC 60.631 44.444 2.02 0.00 0.00 3.85
2744 2926 6.600822 GGTAAGTGGCTACATATATAGGACGA 59.399 42.308 2.02 0.00 0.00 4.20
2745 2927 6.761099 AAGTGGCTACATATATAGGACGAG 57.239 41.667 2.02 0.00 0.00 4.18
2746 2928 5.817784 AGTGGCTACATATATAGGACGAGT 58.182 41.667 2.02 0.00 0.00 4.18
2755 2937 7.575505 ACATATATAGGACGAGTACATAGGCT 58.424 38.462 0.54 0.00 0.00 4.58
2792 2974 3.892918 GCATATACCTGCAAGCAAGAG 57.107 47.619 0.00 0.00 41.87 2.85
2850 3036 6.070881 CCAATTATTTGACCTGACCAATGGAA 60.071 38.462 6.16 0.00 34.60 3.53
2886 3076 6.791303 TCGATCCTGTTGTAATTAAATTGCC 58.209 36.000 0.00 0.00 0.00 4.52
2959 3149 2.735134 GGTTGTACTTAACGCTGTCCTG 59.265 50.000 0.00 0.00 0.00 3.86
2976 3166 1.383664 TGGATGCTAGCTCTGGCCT 60.384 57.895 17.23 0.00 39.73 5.19
2999 3189 2.749621 GCCTGTTGAGAATCCGTTGATT 59.250 45.455 0.00 0.00 43.91 2.57
3032 3222 8.838649 ATTGTTGGGATTAATTAGCTAAACCT 57.161 30.769 10.85 0.91 0.00 3.50
3033 3223 7.639113 TGTTGGGATTAATTAGCTAAACCTG 57.361 36.000 10.85 0.00 0.00 4.00
3034 3224 6.096282 TGTTGGGATTAATTAGCTAAACCTGC 59.904 38.462 10.85 1.41 0.00 4.85
3035 3225 6.013554 TGGGATTAATTAGCTAAACCTGCT 57.986 37.500 10.85 0.00 43.79 4.24
3037 3227 7.224297 TGGGATTAATTAGCTAAACCTGCTAG 58.776 38.462 10.85 0.00 42.89 3.42
3038 3228 7.147373 TGGGATTAATTAGCTAAACCTGCTAGT 60.147 37.037 10.85 0.00 42.89 2.57
3039 3229 8.373220 GGGATTAATTAGCTAAACCTGCTAGTA 58.627 37.037 10.85 0.00 42.89 1.82
3045 3235 9.543783 AATTAGCTAAACCTGCTAGTAATACAC 57.456 33.333 10.85 0.00 42.89 2.90
3046 3236 5.589192 AGCTAAACCTGCTAGTAATACACG 58.411 41.667 0.00 0.00 39.21 4.49
3052 3243 3.568853 CCTGCTAGTAATACACGTAGCCT 59.431 47.826 7.42 0.00 35.09 4.58
3053 3244 4.758674 CCTGCTAGTAATACACGTAGCCTA 59.241 45.833 7.42 0.00 35.09 3.93
3082 3273 3.050619 ACAAGAAGTTAGTTGCTCGACG 58.949 45.455 0.00 0.00 0.00 5.12
3083 3274 3.243301 ACAAGAAGTTAGTTGCTCGACGA 60.243 43.478 0.00 0.00 0.00 4.20
3084 3275 2.931228 AGAAGTTAGTTGCTCGACGAC 58.069 47.619 0.00 0.00 0.00 4.34
3237 3434 2.120312 GAAAAGAGGGGGCTAGCTAGT 58.880 52.381 21.62 1.29 0.00 2.57
3242 3442 1.819903 GAGGGGGCTAGCTAGTTATCG 59.180 57.143 21.62 0.00 0.00 2.92
3245 3445 1.199558 GGGGCTAGCTAGTTATCGACG 59.800 57.143 21.62 0.00 0.00 5.12
3278 3478 2.824936 CACAACAATTCCATGGCCACTA 59.175 45.455 8.16 0.00 0.00 2.74
3279 3479 2.825532 ACAACAATTCCATGGCCACTAC 59.174 45.455 8.16 0.00 0.00 2.73
3280 3480 3.091545 CAACAATTCCATGGCCACTACT 58.908 45.455 8.16 0.00 0.00 2.57
3357 3557 3.046087 CAGTGTGCCCTGCTGTCG 61.046 66.667 0.00 0.00 0.00 4.35
3376 3576 4.986659 TGTCGATGCTCATCTACATGAATG 59.013 41.667 11.62 0.26 38.21 2.67
3431 3631 2.812358 TCTAGCTGAAAAGTGTGCGA 57.188 45.000 0.00 0.00 0.00 5.10
3534 3753 1.812571 AGCGTTTGGTTGCAGGAATAG 59.187 47.619 0.00 0.00 0.00 1.73
3681 3929 0.949588 CTGCTGTCAGTGAGTGCCTG 60.950 60.000 12.89 4.65 35.61 4.85
3700 3948 2.900546 CTGGCTAGTTAGGATTCCCGAT 59.099 50.000 0.00 0.00 37.58 4.18
3707 3955 7.036829 GCTAGTTAGGATTCCCGATATCTTTC 58.963 42.308 0.00 0.00 37.58 2.62
3923 4383 4.402616 AATGTTCCTCCAATCCCAGAAA 57.597 40.909 0.00 0.00 0.00 2.52
3924 4384 3.893753 TGTTCCTCCAATCCCAGAAAA 57.106 42.857 0.00 0.00 0.00 2.29
3952 4415 7.775397 AACACGCACTAGTTCTTTTAGTAAA 57.225 32.000 0.00 0.00 30.48 2.01
3960 4423 7.113965 CACTAGTTCTTTTAGTAAAAGCGTCGA 59.886 37.037 24.63 14.37 45.79 4.20
4110 4580 4.571919 CCATCAATTGTTGTTGCTGGAAT 58.428 39.130 13.97 0.00 44.29 3.01
4128 4598 4.837860 TGGAATGGAAAAGGTGTGCTTAAT 59.162 37.500 0.00 0.00 0.00 1.40
4136 4606 6.072893 GGAAAAGGTGTGCTTAATTAAGACGA 60.073 38.462 26.00 8.34 35.33 4.20
4139 4609 5.730550 AGGTGTGCTTAATTAAGACGATCA 58.269 37.500 26.00 12.59 35.33 2.92
4153 4623 0.588233 CGATCATCGCAACTTGCAGC 60.588 55.000 14.10 0.00 45.36 5.25
4169 4639 4.712425 GCGTTGCTGCTTGGCTGG 62.712 66.667 0.00 0.00 0.00 4.85
4206 4676 0.252197 GGGTAGTGTGCCGGATCTTT 59.748 55.000 5.05 0.00 0.00 2.52
4238 4708 1.441515 CGTCGTCGTCGTCCAACAT 60.442 57.895 3.67 0.00 38.33 2.71
4449 4928 2.100916 GCTAGGCAGATTACGAACCAGA 59.899 50.000 0.00 0.00 0.00 3.86
4452 4931 1.473434 GGCAGATTACGAACCAGAGGG 60.473 57.143 0.00 0.00 41.29 4.30
4462 4941 3.009033 ACGAACCAGAGGGAATGAATGAA 59.991 43.478 0.00 0.00 38.05 2.57
4468 4947 4.324099 CCAGAGGGAATGAATGAAGTGTCT 60.324 45.833 0.00 0.00 35.59 3.41
4469 4948 5.251764 CAGAGGGAATGAATGAAGTGTCTT 58.748 41.667 0.00 0.00 0.00 3.01
4470 4949 5.709164 CAGAGGGAATGAATGAAGTGTCTTT 59.291 40.000 0.00 0.00 0.00 2.52
4508 4987 6.581171 ACATTTGTTTTTCTCTCCATCTCC 57.419 37.500 0.00 0.00 0.00 3.71
4509 4988 5.182001 ACATTTGTTTTTCTCTCCATCTCCG 59.818 40.000 0.00 0.00 0.00 4.63
4512 4991 2.386661 TTTTCTCTCCATCTCCGTGC 57.613 50.000 0.00 0.00 0.00 5.34
4513 4992 1.561643 TTTCTCTCCATCTCCGTGCT 58.438 50.000 0.00 0.00 0.00 4.40
4523 5002 1.911057 TCTCCGTGCTCTCTCTTTCA 58.089 50.000 0.00 0.00 0.00 2.69
4635 5114 6.392625 TCTGATTAGTAGCAGATGTACCAC 57.607 41.667 0.00 0.00 41.62 4.16
4649 5137 7.819415 GCAGATGTACCACATATGTGTATGTAT 59.181 37.037 29.25 18.10 46.37 2.29
4666 5154 4.238761 TGTATTACGTAGCAGAGATGCC 57.761 45.455 0.00 0.00 34.90 4.40
4689 5177 3.051479 CAGTGACCGCTGCATGCA 61.051 61.111 21.29 21.29 43.06 3.96
4690 5178 3.052082 AGTGACCGCTGCATGCAC 61.052 61.111 18.46 12.94 43.06 4.57
4691 5179 4.450122 GTGACCGCTGCATGCACG 62.450 66.667 25.71 25.71 43.06 5.34
4692 5180 4.986645 TGACCGCTGCATGCACGT 62.987 61.111 28.23 20.31 43.06 4.49
4805 5293 4.973168 TCAAGTTGTTGCTTACTCTGGAT 58.027 39.130 2.11 0.00 33.23 3.41
4809 5297 1.899814 TGTTGCTTACTCTGGATCGGT 59.100 47.619 0.00 0.00 0.00 4.69
4819 5307 1.306141 TGGATCGGTCTCTGGGCTT 60.306 57.895 0.00 0.00 0.00 4.35
4843 5331 0.928229 CACAAACTATACTCGCCGCC 59.072 55.000 0.00 0.00 0.00 6.13
4881 5371 7.389884 AGACAAGATGCATGATATTAGCGAAAT 59.610 33.333 2.46 0.00 0.00 2.17
4899 5392 6.974622 AGCGAAATTTGTAAGGCTAATCAATG 59.025 34.615 0.00 0.00 0.00 2.82
4912 5405 7.970102 AGGCTAATCAATGGCATAAATTTGAT 58.030 30.769 0.00 3.76 39.76 2.57
5293 5790 1.865865 AGTATAATGCTGAACCGCGG 58.134 50.000 26.86 26.86 0.00 6.46
5369 5866 4.135153 CCTCCCGCGTCACTCCTG 62.135 72.222 4.92 0.00 0.00 3.86
5370 5867 4.803426 CTCCCGCGTCACTCCTGC 62.803 72.222 4.92 0.00 0.00 4.85
5418 5915 3.543680 TTCCGATGTCATTCTTCCTCC 57.456 47.619 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.076044 CCATGGGTGTGGGATTCCC 60.076 63.158 15.40 15.40 45.71 3.97
24 25 0.557729 ATCCATGGGTGTGGGATTCC 59.442 55.000 13.02 0.00 38.22 3.01
25 26 1.496429 AGATCCATGGGTGTGGGATTC 59.504 52.381 13.02 0.00 41.39 2.52
26 27 1.216175 CAGATCCATGGGTGTGGGATT 59.784 52.381 14.45 0.00 41.39 3.01
27 28 0.848735 CAGATCCATGGGTGTGGGAT 59.151 55.000 14.45 0.00 43.92 3.85
28 29 1.281199 CCAGATCCATGGGTGTGGGA 61.281 60.000 29.82 0.95 39.80 4.37
29 30 1.228228 CCAGATCCATGGGTGTGGG 59.772 63.158 29.82 13.66 39.80 4.61
30 31 4.993307 CCAGATCCATGGGTGTGG 57.007 61.111 25.75 25.75 40.76 4.17
36 37 2.196776 GGGTGCCCAGATCCATGG 59.803 66.667 4.97 4.97 40.29 3.66
37 38 2.203252 CGGGTGCCCAGATCCATG 60.203 66.667 8.14 0.00 35.37 3.66
38 39 2.692368 ACGGGTGCCCAGATCCAT 60.692 61.111 8.14 0.00 35.37 3.41
39 40 3.716195 CACGGGTGCCCAGATCCA 61.716 66.667 8.14 0.00 35.37 3.41
81 82 4.832608 GACGGTGTGGCGGATCCC 62.833 72.222 6.06 0.00 0.00 3.85
83 84 4.124351 TCGACGGTGTGGCGGATC 62.124 66.667 0.00 0.00 0.00 3.36
84 85 4.129737 CTCGACGGTGTGGCGGAT 62.130 66.667 0.00 0.00 0.00 4.18
86 87 4.778415 CTCTCGACGGTGTGGCGG 62.778 72.222 0.00 0.00 0.00 6.13
87 88 4.778415 CCTCTCGACGGTGTGGCG 62.778 72.222 0.00 0.00 0.00 5.69
88 89 4.436998 CCCTCTCGACGGTGTGGC 62.437 72.222 0.00 0.00 0.00 5.01
89 90 4.436998 GCCCTCTCGACGGTGTGG 62.437 72.222 0.00 0.00 0.00 4.17
90 91 4.436998 GGCCCTCTCGACGGTGTG 62.437 72.222 0.00 0.00 0.00 3.82
109 110 4.530857 GTCCTGATCCGCGGGGTG 62.531 72.222 27.83 13.02 43.76 4.61
143 144 2.010582 CTCTTCTCCTCCCGCTTCCG 62.011 65.000 0.00 0.00 0.00 4.30
144 145 0.684805 TCTCTTCTCCTCCCGCTTCC 60.685 60.000 0.00 0.00 0.00 3.46
145 146 0.458260 GTCTCTTCTCCTCCCGCTTC 59.542 60.000 0.00 0.00 0.00 3.86
146 147 0.973496 GGTCTCTTCTCCTCCCGCTT 60.973 60.000 0.00 0.00 0.00 4.68
147 148 1.380650 GGTCTCTTCTCCTCCCGCT 60.381 63.158 0.00 0.00 0.00 5.52
148 149 2.428085 GGGTCTCTTCTCCTCCCGC 61.428 68.421 0.00 0.00 0.00 6.13
149 150 0.753848 GAGGGTCTCTTCTCCTCCCG 60.754 65.000 0.00 0.00 42.57 5.14
150 151 3.217321 GAGGGTCTCTTCTCCTCCC 57.783 63.158 0.00 0.00 40.76 4.30
155 156 1.388837 GCGGAGGAGGGTCTCTTCTC 61.389 65.000 0.00 0.00 45.51 2.87
156 157 1.380650 GCGGAGGAGGGTCTCTTCT 60.381 63.158 6.93 0.00 36.91 2.85
157 158 2.428085 GGCGGAGGAGGGTCTCTTC 61.428 68.421 0.00 0.00 36.13 2.87
158 159 2.364448 GGCGGAGGAGGGTCTCTT 60.364 66.667 0.00 0.00 34.39 2.85
159 160 4.824515 CGGCGGAGGAGGGTCTCT 62.825 72.222 0.00 0.00 34.39 3.10
200 201 4.794439 TGTCGATGGTCAGCGCCG 62.794 66.667 2.29 0.00 40.42 6.46
201 202 2.434185 TTGTCGATGGTCAGCGCC 60.434 61.111 2.29 0.00 40.42 6.53
202 203 1.565156 TTGTTGTCGATGGTCAGCGC 61.565 55.000 0.00 0.00 40.42 5.92
203 204 0.163788 GTTGTTGTCGATGGTCAGCG 59.836 55.000 1.93 1.93 42.20 5.18
204 205 0.163788 CGTTGTTGTCGATGGTCAGC 59.836 55.000 0.00 0.00 0.00 4.26
205 206 0.790207 CCGTTGTTGTCGATGGTCAG 59.210 55.000 0.00 0.00 31.22 3.51
206 207 0.389757 TCCGTTGTTGTCGATGGTCA 59.610 50.000 0.00 0.00 35.97 4.02
207 208 1.068474 CTCCGTTGTTGTCGATGGTC 58.932 55.000 0.00 0.00 35.97 4.02
208 209 0.320421 CCTCCGTTGTTGTCGATGGT 60.320 55.000 0.00 0.00 35.97 3.55
209 210 1.019278 CCCTCCGTTGTTGTCGATGG 61.019 60.000 0.00 0.00 35.87 3.51
210 211 1.019278 CCCCTCCGTTGTTGTCGATG 61.019 60.000 0.00 0.00 0.00 3.84
211 212 1.189524 TCCCCTCCGTTGTTGTCGAT 61.190 55.000 0.00 0.00 0.00 3.59
212 213 1.401318 TTCCCCTCCGTTGTTGTCGA 61.401 55.000 0.00 0.00 0.00 4.20
213 214 0.949105 CTTCCCCTCCGTTGTTGTCG 60.949 60.000 0.00 0.00 0.00 4.35
214 215 0.395312 TCTTCCCCTCCGTTGTTGTC 59.605 55.000 0.00 0.00 0.00 3.18
215 216 0.841289 TTCTTCCCCTCCGTTGTTGT 59.159 50.000 0.00 0.00 0.00 3.32
216 217 1.523758 CTTCTTCCCCTCCGTTGTTG 58.476 55.000 0.00 0.00 0.00 3.33
217 218 0.400594 CCTTCTTCCCCTCCGTTGTT 59.599 55.000 0.00 0.00 0.00 2.83
218 219 1.489560 CCCTTCTTCCCCTCCGTTGT 61.490 60.000 0.00 0.00 0.00 3.32
219 220 1.299976 CCCTTCTTCCCCTCCGTTG 59.700 63.158 0.00 0.00 0.00 4.10
220 221 2.603652 GCCCTTCTTCCCCTCCGTT 61.604 63.158 0.00 0.00 0.00 4.44
221 222 3.009714 GCCCTTCTTCCCCTCCGT 61.010 66.667 0.00 0.00 0.00 4.69
222 223 4.162690 CGCCCTTCTTCCCCTCCG 62.163 72.222 0.00 0.00 0.00 4.63
223 224 2.603652 AACGCCCTTCTTCCCCTCC 61.604 63.158 0.00 0.00 0.00 4.30
224 225 1.377333 CAACGCCCTTCTTCCCCTC 60.377 63.158 0.00 0.00 0.00 4.30
225 226 2.757077 CAACGCCCTTCTTCCCCT 59.243 61.111 0.00 0.00 0.00 4.79
226 227 2.361230 CCAACGCCCTTCTTCCCC 60.361 66.667 0.00 0.00 0.00 4.81
227 228 1.377333 CTCCAACGCCCTTCTTCCC 60.377 63.158 0.00 0.00 0.00 3.97
228 229 1.377333 CCTCCAACGCCCTTCTTCC 60.377 63.158 0.00 0.00 0.00 3.46
229 230 1.377333 CCCTCCAACGCCCTTCTTC 60.377 63.158 0.00 0.00 0.00 2.87
230 231 0.838987 TACCCTCCAACGCCCTTCTT 60.839 55.000 0.00 0.00 0.00 2.52
231 232 1.229400 TACCCTCCAACGCCCTTCT 60.229 57.895 0.00 0.00 0.00 2.85
232 233 1.078637 GTACCCTCCAACGCCCTTC 60.079 63.158 0.00 0.00 0.00 3.46
233 234 0.252375 TAGTACCCTCCAACGCCCTT 60.252 55.000 0.00 0.00 0.00 3.95
234 235 0.686769 CTAGTACCCTCCAACGCCCT 60.687 60.000 0.00 0.00 0.00 5.19
235 236 1.683418 CCTAGTACCCTCCAACGCCC 61.683 65.000 0.00 0.00 0.00 6.13
236 237 1.821258 CCTAGTACCCTCCAACGCC 59.179 63.158 0.00 0.00 0.00 5.68
237 238 1.143401 GCCTAGTACCCTCCAACGC 59.857 63.158 0.00 0.00 0.00 4.84
238 239 1.436336 CGCCTAGTACCCTCCAACG 59.564 63.158 0.00 0.00 0.00 4.10
239 240 1.821258 CCGCCTAGTACCCTCCAAC 59.179 63.158 0.00 0.00 0.00 3.77
240 241 2.062177 GCCGCCTAGTACCCTCCAA 61.062 63.158 0.00 0.00 0.00 3.53
241 242 2.443390 GCCGCCTAGTACCCTCCA 60.443 66.667 0.00 0.00 0.00 3.86
242 243 1.746322 GAAGCCGCCTAGTACCCTCC 61.746 65.000 0.00 0.00 0.00 4.30
243 244 1.740905 GAAGCCGCCTAGTACCCTC 59.259 63.158 0.00 0.00 0.00 4.30
244 245 2.125961 CGAAGCCGCCTAGTACCCT 61.126 63.158 0.00 0.00 0.00 4.34
245 246 2.416260 CGAAGCCGCCTAGTACCC 59.584 66.667 0.00 0.00 0.00 3.69
246 247 2.416260 CCGAAGCCGCCTAGTACC 59.584 66.667 0.00 0.00 0.00 3.34
247 248 1.226888 CACCGAAGCCGCCTAGTAC 60.227 63.158 0.00 0.00 0.00 2.73
248 249 2.420568 CCACCGAAGCCGCCTAGTA 61.421 63.158 0.00 0.00 0.00 1.82
249 250 3.771160 CCACCGAAGCCGCCTAGT 61.771 66.667 0.00 0.00 0.00 2.57
289 290 3.812019 CTCACGTCGTCTCCCCCG 61.812 72.222 0.00 0.00 0.00 5.73
290 291 2.360852 TCTCACGTCGTCTCCCCC 60.361 66.667 0.00 0.00 0.00 5.40
291 292 2.408241 CCTCTCACGTCGTCTCCCC 61.408 68.421 0.00 0.00 0.00 4.81
292 293 2.408241 CCCTCTCACGTCGTCTCCC 61.408 68.421 0.00 0.00 0.00 4.30
293 294 1.376942 TCCCTCTCACGTCGTCTCC 60.377 63.158 0.00 0.00 0.00 3.71
294 295 0.954449 TGTCCCTCTCACGTCGTCTC 60.954 60.000 0.00 0.00 0.00 3.36
295 296 1.072678 TGTCCCTCTCACGTCGTCT 59.927 57.895 0.00 0.00 0.00 4.18
296 297 1.209640 GTGTCCCTCTCACGTCGTC 59.790 63.158 0.00 0.00 0.00 4.20
297 298 3.352524 GTGTCCCTCTCACGTCGT 58.647 61.111 0.00 0.00 0.00 4.34
302 303 2.574399 GGCTCGTGTCCCTCTCAC 59.426 66.667 0.00 0.00 0.00 3.51
303 304 2.680352 GGGCTCGTGTCCCTCTCA 60.680 66.667 0.00 0.00 40.66 3.27
309 310 3.208335 GAGTAGGGGCTCGTGTCC 58.792 66.667 0.00 0.00 37.19 4.02
315 316 1.067212 CATGTGTACGAGTAGGGGCTC 59.933 57.143 0.00 0.00 0.00 4.70
316 317 1.112113 CATGTGTACGAGTAGGGGCT 58.888 55.000 0.00 0.00 0.00 5.19
317 318 1.108776 TCATGTGTACGAGTAGGGGC 58.891 55.000 0.00 0.00 0.00 5.80
318 319 3.430374 CCTTTCATGTGTACGAGTAGGGG 60.430 52.174 0.00 0.00 0.00 4.79
319 320 3.782046 CCTTTCATGTGTACGAGTAGGG 58.218 50.000 0.00 0.00 0.00 3.53
320 321 3.187700 GCCTTTCATGTGTACGAGTAGG 58.812 50.000 0.00 0.00 0.00 3.18
321 322 2.852413 CGCCTTTCATGTGTACGAGTAG 59.148 50.000 0.00 0.00 0.00 2.57
322 323 2.488937 TCGCCTTTCATGTGTACGAGTA 59.511 45.455 0.00 0.00 0.00 2.59
323 324 1.271379 TCGCCTTTCATGTGTACGAGT 59.729 47.619 0.00 0.00 0.00 4.18
324 325 1.920574 CTCGCCTTTCATGTGTACGAG 59.079 52.381 11.33 11.33 39.44 4.18
325 326 1.542472 TCTCGCCTTTCATGTGTACGA 59.458 47.619 0.00 0.00 0.00 3.43
326 327 1.920574 CTCTCGCCTTTCATGTGTACG 59.079 52.381 0.00 0.00 0.00 3.67
327 328 2.924290 GACTCTCGCCTTTCATGTGTAC 59.076 50.000 0.00 0.00 0.00 2.90
328 329 2.415491 CGACTCTCGCCTTTCATGTGTA 60.415 50.000 0.00 0.00 31.14 2.90
329 330 1.670087 CGACTCTCGCCTTTCATGTGT 60.670 52.381 0.00 0.00 31.14 3.72
330 331 0.994995 CGACTCTCGCCTTTCATGTG 59.005 55.000 0.00 0.00 31.14 3.21
331 332 0.603569 ACGACTCTCGCCTTTCATGT 59.396 50.000 0.00 0.00 45.12 3.21
332 333 1.391485 CAACGACTCTCGCCTTTCATG 59.609 52.381 0.00 0.00 45.12 3.07
333 334 1.000955 ACAACGACTCTCGCCTTTCAT 59.999 47.619 0.00 0.00 45.12 2.57
334 335 0.387929 ACAACGACTCTCGCCTTTCA 59.612 50.000 0.00 0.00 45.12 2.69
335 336 1.499049 AACAACGACTCTCGCCTTTC 58.501 50.000 0.00 0.00 45.12 2.62
336 337 1.949465 AAACAACGACTCTCGCCTTT 58.051 45.000 0.00 0.00 45.12 3.11
337 338 1.949465 AAAACAACGACTCTCGCCTT 58.051 45.000 0.00 0.00 45.12 4.35
338 339 1.865340 GAAAAACAACGACTCTCGCCT 59.135 47.619 0.00 0.00 45.12 5.52
339 340 1.865340 AGAAAAACAACGACTCTCGCC 59.135 47.619 0.00 0.00 45.12 5.54
340 341 2.348591 CCAGAAAAACAACGACTCTCGC 60.349 50.000 0.00 0.00 45.12 5.03
341 342 3.120792 TCCAGAAAAACAACGACTCTCG 58.879 45.455 0.00 0.00 46.93 4.04
342 343 5.674933 AATCCAGAAAAACAACGACTCTC 57.325 39.130 0.00 0.00 0.00 3.20
343 344 5.008712 GGAAATCCAGAAAAACAACGACTCT 59.991 40.000 0.00 0.00 35.64 3.24
344 345 5.212934 GGAAATCCAGAAAAACAACGACTC 58.787 41.667 0.00 0.00 35.64 3.36
345 346 4.037565 GGGAAATCCAGAAAAACAACGACT 59.962 41.667 1.22 0.00 37.91 4.18
346 347 4.037565 AGGGAAATCCAGAAAAACAACGAC 59.962 41.667 1.22 0.00 38.24 4.34
347 348 4.211920 AGGGAAATCCAGAAAAACAACGA 58.788 39.130 1.22 0.00 38.24 3.85
348 349 4.584327 AGGGAAATCCAGAAAAACAACG 57.416 40.909 1.22 0.00 38.24 4.10
349 350 7.497595 ACTTTAGGGAAATCCAGAAAAACAAC 58.502 34.615 1.22 0.00 38.24 3.32
350 351 7.669089 ACTTTAGGGAAATCCAGAAAAACAA 57.331 32.000 1.22 0.00 38.24 2.83
351 352 7.418483 CCAACTTTAGGGAAATCCAGAAAAACA 60.418 37.037 1.22 0.00 38.24 2.83
352 353 6.929049 CCAACTTTAGGGAAATCCAGAAAAAC 59.071 38.462 1.22 0.00 38.24 2.43
353 354 6.841755 TCCAACTTTAGGGAAATCCAGAAAAA 59.158 34.615 1.22 0.00 38.24 1.94
354 355 6.377912 TCCAACTTTAGGGAAATCCAGAAAA 58.622 36.000 1.22 0.00 38.24 2.29
355 356 5.959512 TCCAACTTTAGGGAAATCCAGAAA 58.040 37.500 1.22 0.49 38.24 2.52
356 357 5.592587 TCCAACTTTAGGGAAATCCAGAA 57.407 39.130 1.22 0.00 38.24 3.02
357 358 5.592587 TTCCAACTTTAGGGAAATCCAGA 57.407 39.130 1.22 0.00 40.11 3.86
358 359 6.351286 CCAATTCCAACTTTAGGGAAATCCAG 60.351 42.308 1.22 0.00 45.63 3.86
362 363 6.556874 TCAACCAATTCCAACTTTAGGGAAAT 59.443 34.615 0.00 0.00 45.63 2.17
374 375 2.291540 CCTAGGGCTCAACCAATTCCAA 60.292 50.000 0.00 0.00 42.05 3.53
500 501 3.487711 CCGTGAGAATTCTACCGAGTGAG 60.488 52.174 21.51 6.48 0.00 3.51
526 528 3.367992 TTTGTTAGCTTGTGGCATGTG 57.632 42.857 0.00 0.00 44.79 3.21
532 534 5.200368 ACCTCATTTTTGTTAGCTTGTGG 57.800 39.130 0.00 0.00 0.00 4.17
538 540 6.433093 TCCCTCTTTACCTCATTTTTGTTAGC 59.567 38.462 0.00 0.00 0.00 3.09
541 543 7.669089 TTTCCCTCTTTACCTCATTTTTGTT 57.331 32.000 0.00 0.00 0.00 2.83
590 594 3.423539 TGACTGGAATCCAACAGAAGG 57.576 47.619 2.61 0.00 38.09 3.46
604 608 5.772825 TCTTTTGGTTTCAAGATGACTGG 57.227 39.130 0.00 0.00 33.98 4.00
691 696 1.444836 TTTCGTCAAATAGCACCCGG 58.555 50.000 0.00 0.00 0.00 5.73
776 781 0.239347 CAGCAAGTTACAGTGCCTGC 59.761 55.000 7.30 0.00 41.88 4.85
1002 1023 2.714250 GACTAGGGAGAGAGAGATGGGA 59.286 54.545 0.00 0.00 0.00 4.37
1147 1168 2.431260 CACGGCAGTGGCAAATGC 60.431 61.111 17.80 4.55 44.34 3.56
1174 1195 2.354805 GGTAGCTTGTAGTTCACAGGGG 60.355 54.545 0.00 0.00 38.72 4.79
1255 1278 1.013755 CGTAATAGCACGCACGCAC 60.014 57.895 0.00 0.00 34.78 5.34
1256 1279 1.137459 CTCGTAATAGCACGCACGCA 61.137 55.000 0.00 0.00 41.67 5.24
1257 1280 1.553654 CTCGTAATAGCACGCACGC 59.446 57.895 0.00 0.00 41.67 5.34
1258 1281 0.866061 AGCTCGTAATAGCACGCACG 60.866 55.000 0.00 0.00 45.30 5.34
1299 1322 1.365633 CGTCCTCTCCATGGCTAGC 59.634 63.158 6.96 6.04 0.00 3.42
1300 1323 1.365633 GCGTCCTCTCCATGGCTAG 59.634 63.158 6.96 6.53 0.00 3.42
1301 1324 2.134287 GGCGTCCTCTCCATGGCTA 61.134 63.158 6.96 0.00 0.00 3.93
1302 1325 3.474570 GGCGTCCTCTCCATGGCT 61.475 66.667 6.96 0.00 0.00 4.75
1459 1482 0.682852 TAGAGGTTGTGGACGTTGGG 59.317 55.000 0.00 0.00 0.00 4.12
1462 1485 1.270147 GCTGTAGAGGTTGTGGACGTT 60.270 52.381 0.00 0.00 0.00 3.99
1464 1487 0.389948 GGCTGTAGAGGTTGTGGACG 60.390 60.000 0.00 0.00 0.00 4.79
1529 1552 4.992294 CGGCGGCCGTGTTTTTGG 62.992 66.667 32.14 1.45 42.73 3.28
1564 1587 1.930567 ATGTAACACGTCGTATGGCC 58.069 50.000 0.00 0.00 0.00 5.36
1574 1597 6.792250 GCAGCTTTTAGCATATATGTAACACG 59.208 38.462 14.14 1.63 45.56 4.49
1584 1607 3.694072 TCAAACGGCAGCTTTTAGCATAT 59.306 39.130 1.09 0.00 45.56 1.78
1588 1614 1.266989 AGTCAAACGGCAGCTTTTAGC 59.733 47.619 0.00 0.00 42.84 3.09
1591 1617 0.307760 CGAGTCAAACGGCAGCTTTT 59.692 50.000 0.00 0.00 0.00 2.27
1810 1837 3.528217 TTGGAGCCCTTGCCCTTGG 62.528 63.158 0.00 0.00 38.69 3.61
1883 1910 1.672030 CTTGTGGTGATGCGGCAGA 60.672 57.895 9.25 0.00 0.00 4.26
1962 1992 7.253750 GCAGTAAGAACAAATTAATGGCAATCG 60.254 37.037 0.00 0.00 30.86 3.34
2028 2076 4.201773 TGCAGTTGAACAAGTACAAGAACG 60.202 41.667 0.00 0.00 0.00 3.95
2067 2115 2.043992 TGGCACTACTAACACACAGGT 58.956 47.619 0.00 0.00 0.00 4.00
2068 2116 2.037251 AGTGGCACTACTAACACACAGG 59.963 50.000 20.61 0.00 36.35 4.00
2086 2134 3.431486 GCTAAGGATTGGAGACTGGAGTG 60.431 52.174 0.00 0.00 0.00 3.51
2093 2141 4.222124 TCCAAAGCTAAGGATTGGAGAC 57.778 45.455 11.94 0.00 45.71 3.36
2110 2158 2.041485 TGGAGCTGTCATCCAATTCCAA 59.959 45.455 0.00 0.00 43.87 3.53
2111 2159 1.634973 TGGAGCTGTCATCCAATTCCA 59.365 47.619 0.00 0.00 43.87 3.53
2112 2160 2.425143 TGGAGCTGTCATCCAATTCC 57.575 50.000 0.00 0.00 43.87 3.01
2170 2218 7.121759 AGCATGCAACTTCAATTATCAGTACTT 59.878 33.333 21.98 0.00 0.00 2.24
2238 2405 4.336713 CCTAATCTAAGCAAAACCTGAGGC 59.663 45.833 0.00 0.00 0.00 4.70
2286 2453 3.730715 CCAGCAAAACTGTTCAATTCGAC 59.269 43.478 0.00 0.00 45.68 4.20
2395 2565 2.189191 ATATGCGCATGATCCGGCCT 62.189 55.000 32.48 5.52 0.00 5.19
2396 2566 1.746615 ATATGCGCATGATCCGGCC 60.747 57.895 32.48 0.00 0.00 6.13
2399 2569 1.799994 TGAACATATGCGCATGATCCG 59.200 47.619 32.48 17.13 29.22 4.18
2410 2580 2.159393 CCGTGCCAAGGTTGAACATATG 60.159 50.000 0.00 0.00 0.00 1.78
2412 2582 1.072489 TCCGTGCCAAGGTTGAACATA 59.928 47.619 0.00 0.00 0.00 2.29
2488 2664 1.068816 TCATGGTCGACGCCGTATATG 60.069 52.381 9.92 5.62 37.05 1.78
2499 2675 4.371786 GCTAATTCTGACATCATGGTCGA 58.628 43.478 0.00 0.00 40.72 4.20
2500 2676 3.183172 CGCTAATTCTGACATCATGGTCG 59.817 47.826 0.00 0.00 40.72 4.79
2501 2677 4.122776 ACGCTAATTCTGACATCATGGTC 58.877 43.478 0.00 0.00 38.29 4.02
2502 2678 4.142609 ACGCTAATTCTGACATCATGGT 57.857 40.909 0.00 0.00 0.00 3.55
2545 2721 6.539826 TCTGTGAAGTTTATGTATGCCTCATG 59.460 38.462 0.00 0.00 0.00 3.07
2562 2738 5.728471 AGAGTGGTTATGTCATCTGTGAAG 58.272 41.667 0.00 0.00 35.80 3.02
2570 2746 4.223700 TCTCAGCAAGAGTGGTTATGTCAT 59.776 41.667 6.15 0.00 44.98 3.06
2589 2765 6.039493 GTGAGACGGAGGAAGTATTAATCTCA 59.961 42.308 0.00 0.00 38.12 3.27
2603 2779 4.551388 GCTCTTATATTGTGAGACGGAGG 58.449 47.826 0.00 0.00 0.00 4.30
2604 2780 4.222886 CGCTCTTATATTGTGAGACGGAG 58.777 47.826 0.00 0.00 0.00 4.63
2605 2781 3.630769 ACGCTCTTATATTGTGAGACGGA 59.369 43.478 0.00 0.00 34.39 4.69
2606 2782 3.966154 ACGCTCTTATATTGTGAGACGG 58.034 45.455 0.00 0.00 34.39 4.79
2607 2783 5.950965 AAACGCTCTTATATTGTGAGACG 57.049 39.130 0.00 0.00 35.35 4.18
2608 2784 7.688578 GTGAAAAACGCTCTTATATTGTGAGAC 59.311 37.037 0.00 0.00 0.00 3.36
2609 2785 7.386573 TGTGAAAAACGCTCTTATATTGTGAGA 59.613 33.333 0.00 0.00 0.00 3.27
2610 2786 7.478667 GTGTGAAAAACGCTCTTATATTGTGAG 59.521 37.037 0.00 0.00 36.31 3.51
2611 2787 7.172532 AGTGTGAAAAACGCTCTTATATTGTGA 59.827 33.333 0.00 0.00 46.98 3.58
2612 2788 7.298122 AGTGTGAAAAACGCTCTTATATTGTG 58.702 34.615 0.00 0.00 46.98 3.33
2613 2789 7.435068 AGTGTGAAAAACGCTCTTATATTGT 57.565 32.000 0.00 0.00 46.98 2.71
2614 2790 8.656849 ACTAGTGTGAAAAACGCTCTTATATTG 58.343 33.333 0.00 0.00 46.98 1.90
2615 2791 8.773404 ACTAGTGTGAAAAACGCTCTTATATT 57.227 30.769 0.00 0.00 46.98 1.28
2618 2794 9.517609 CTATACTAGTGTGAAAAACGCTCTTAT 57.482 33.333 5.39 0.00 46.98 1.73
2619 2795 8.517878 ACTATACTAGTGTGAAAAACGCTCTTA 58.482 33.333 5.39 0.00 46.98 2.10
2620 2796 7.376615 ACTATACTAGTGTGAAAAACGCTCTT 58.623 34.615 5.39 0.00 46.98 2.85
2621 2797 6.921914 ACTATACTAGTGTGAAAAACGCTCT 58.078 36.000 5.39 0.00 46.98 4.09
2622 2798 8.853469 ATACTATACTAGTGTGAAAAACGCTC 57.147 34.615 5.39 0.00 46.98 5.03
2624 2800 8.529911 GTGATACTATACTAGTGTGAAAAACGC 58.470 37.037 5.39 0.00 39.81 4.84
2625 2801 9.563898 TGTGATACTATACTAGTGTGAAAAACG 57.436 33.333 5.39 0.00 39.81 3.60
2629 2805 9.563898 CGTTTGTGATACTATACTAGTGTGAAA 57.436 33.333 5.39 0.00 39.81 2.69
2630 2806 7.699391 GCGTTTGTGATACTATACTAGTGTGAA 59.301 37.037 5.39 0.00 39.81 3.18
2631 2807 7.066645 AGCGTTTGTGATACTATACTAGTGTGA 59.933 37.037 5.39 0.00 39.81 3.58
2632 2808 7.194278 AGCGTTTGTGATACTATACTAGTGTG 58.806 38.462 5.39 0.00 39.81 3.82
2633 2809 7.282675 AGAGCGTTTGTGATACTATACTAGTGT 59.717 37.037 5.39 0.39 39.81 3.55
2634 2810 7.640852 AGAGCGTTTGTGATACTATACTAGTG 58.359 38.462 5.39 0.00 39.81 2.74
2635 2811 7.804843 AGAGCGTTTGTGATACTATACTAGT 57.195 36.000 0.00 0.00 42.68 2.57
2643 2819 9.982651 ACATAATATAAGAGCGTTTGTGATACT 57.017 29.630 0.00 0.00 0.00 2.12
2645 2821 9.974980 TCACATAATATAAGAGCGTTTGTGATA 57.025 29.630 0.00 0.00 36.85 2.15
2646 2822 8.765219 GTCACATAATATAAGAGCGTTTGTGAT 58.235 33.333 5.36 0.00 41.80 3.06
2647 2823 7.223971 GGTCACATAATATAAGAGCGTTTGTGA 59.776 37.037 0.00 0.00 38.75 3.58
2648 2824 7.345192 GGTCACATAATATAAGAGCGTTTGTG 58.655 38.462 0.00 0.00 34.69 3.33
2649 2825 6.200286 CGGTCACATAATATAAGAGCGTTTGT 59.800 38.462 13.73 0.00 42.95 2.83
2650 2826 6.419710 TCGGTCACATAATATAAGAGCGTTTG 59.580 38.462 18.28 0.61 46.50 2.93
2651 2827 6.509656 TCGGTCACATAATATAAGAGCGTTT 58.490 36.000 18.28 0.00 46.50 3.60
2652 2828 6.080648 TCGGTCACATAATATAAGAGCGTT 57.919 37.500 18.28 0.00 46.50 4.84
2653 2829 5.335740 CCTCGGTCACATAATATAAGAGCGT 60.336 44.000 18.28 0.00 46.50 5.07
2655 2831 5.185249 TCCCTCGGTCACATAATATAAGAGC 59.815 44.000 0.00 0.00 0.00 4.09
2656 2832 6.434652 ACTCCCTCGGTCACATAATATAAGAG 59.565 42.308 0.00 0.00 0.00 2.85
2657 2833 6.312529 ACTCCCTCGGTCACATAATATAAGA 58.687 40.000 0.00 0.00 0.00 2.10
2658 2834 6.591750 ACTCCCTCGGTCACATAATATAAG 57.408 41.667 0.00 0.00 0.00 1.73
2659 2835 7.727186 AGTTACTCCCTCGGTCACATAATATAA 59.273 37.037 0.00 0.00 0.00 0.98
2660 2836 7.236529 AGTTACTCCCTCGGTCACATAATATA 58.763 38.462 0.00 0.00 0.00 0.86
2661 2837 6.075984 AGTTACTCCCTCGGTCACATAATAT 58.924 40.000 0.00 0.00 0.00 1.28
2662 2838 5.452255 AGTTACTCCCTCGGTCACATAATA 58.548 41.667 0.00 0.00 0.00 0.98
2663 2839 4.287552 AGTTACTCCCTCGGTCACATAAT 58.712 43.478 0.00 0.00 0.00 1.28
2664 2840 3.705051 AGTTACTCCCTCGGTCACATAA 58.295 45.455 0.00 0.00 0.00 1.90
2665 2841 3.377253 AGTTACTCCCTCGGTCACATA 57.623 47.619 0.00 0.00 0.00 2.29
2666 2842 2.233305 AGTTACTCCCTCGGTCACAT 57.767 50.000 0.00 0.00 0.00 3.21
2667 2843 2.821969 GTTAGTTACTCCCTCGGTCACA 59.178 50.000 0.00 0.00 0.00 3.58
2668 2844 2.821969 TGTTAGTTACTCCCTCGGTCAC 59.178 50.000 0.00 0.00 0.00 3.67
2669 2845 3.087031 CTGTTAGTTACTCCCTCGGTCA 58.913 50.000 0.00 0.00 0.00 4.02
2670 2846 3.087781 ACTGTTAGTTACTCCCTCGGTC 58.912 50.000 0.00 0.00 0.00 4.79
2671 2847 2.824341 CACTGTTAGTTACTCCCTCGGT 59.176 50.000 0.00 0.00 0.00 4.69
2672 2848 2.824341 ACACTGTTAGTTACTCCCTCGG 59.176 50.000 0.00 0.00 0.00 4.63
2673 2849 4.516365 AACACTGTTAGTTACTCCCTCG 57.484 45.455 0.00 0.00 0.00 4.63
2674 2850 8.843885 AATTAAACACTGTTAGTTACTCCCTC 57.156 34.615 0.00 0.00 0.00 4.30
2717 2893 7.415318 CGTCCTATATATGTAGCCACTTACCTG 60.415 44.444 1.07 0.00 0.00 4.00
2726 2902 7.804843 ATGTACTCGTCCTATATATGTAGCC 57.195 40.000 1.07 0.00 0.00 3.93
2740 2922 2.031857 CGGAGAAGCCTATGTACTCGTC 60.032 54.545 0.00 0.00 0.00 4.20
2741 2923 1.948145 CGGAGAAGCCTATGTACTCGT 59.052 52.381 0.00 0.00 0.00 4.18
2742 2924 1.335142 GCGGAGAAGCCTATGTACTCG 60.335 57.143 0.00 0.00 0.00 4.18
2744 2926 2.074729 AGCGGAGAAGCCTATGTACT 57.925 50.000 0.00 0.00 38.01 2.73
2745 2927 2.351932 GCTAGCGGAGAAGCCTATGTAC 60.352 54.545 0.00 0.00 38.01 2.90
2746 2928 1.887198 GCTAGCGGAGAAGCCTATGTA 59.113 52.381 0.00 0.00 38.01 2.29
2755 2937 1.692411 TGCATCTAGCTAGCGGAGAA 58.308 50.000 21.53 7.28 45.94 2.87
2792 2974 5.741388 AGTTGTCACAGTTTGATGAACTC 57.259 39.130 2.39 0.00 45.40 3.01
2850 3036 2.659800 GGATCGATCCGTCCATCCT 58.340 57.895 27.93 0.00 37.19 3.24
2886 3076 1.144057 GCGACCACTACCATCCCAG 59.856 63.158 0.00 0.00 0.00 4.45
2959 3149 1.071128 CAGGCCAGAGCTAGCATCC 59.929 63.158 18.83 9.78 39.73 3.51
2976 3166 0.400213 AACGGATTCTCAACAGGCCA 59.600 50.000 5.01 0.00 0.00 5.36
3029 3219 3.317430 GGCTACGTGTATTACTAGCAGGT 59.683 47.826 0.00 0.00 37.56 4.00
3031 3221 4.832590 AGGCTACGTGTATTACTAGCAG 57.167 45.455 0.00 2.21 37.56 4.24
3032 3222 4.214971 GCTAGGCTACGTGTATTACTAGCA 59.785 45.833 20.95 0.00 46.67 3.49
3033 3223 4.379290 GGCTAGGCTACGTGTATTACTAGC 60.379 50.000 19.19 19.19 46.70 3.42
3034 3224 4.155644 GGGCTAGGCTACGTGTATTACTAG 59.844 50.000 16.80 3.01 0.00 2.57
3035 3225 4.074970 GGGCTAGGCTACGTGTATTACTA 58.925 47.826 16.80 0.00 0.00 1.82
3037 3227 2.889678 AGGGCTAGGCTACGTGTATTAC 59.110 50.000 16.80 0.00 0.00 1.89
3038 3228 3.152341 GAGGGCTAGGCTACGTGTATTA 58.848 50.000 16.80 0.00 0.00 0.98
3039 3229 1.962100 GAGGGCTAGGCTACGTGTATT 59.038 52.381 16.80 0.00 0.00 1.89
3042 3232 0.613853 TTGAGGGCTAGGCTACGTGT 60.614 55.000 16.80 0.00 0.00 4.49
3043 3233 0.179108 GTTGAGGGCTAGGCTACGTG 60.179 60.000 16.80 0.00 0.00 4.49
3045 3235 0.535335 TTGTTGAGGGCTAGGCTACG 59.465 55.000 16.80 0.00 0.00 3.51
3046 3236 1.831736 TCTTGTTGAGGGCTAGGCTAC 59.168 52.381 16.80 10.78 0.00 3.58
3052 3243 5.305585 CAACTAACTTCTTGTTGAGGGCTA 58.694 41.667 0.00 0.00 42.35 3.93
3053 3244 4.137543 CAACTAACTTCTTGTTGAGGGCT 58.862 43.478 0.00 0.00 42.35 5.19
3082 3273 7.330208 GGTGATGGTGTATATGTAAATACGGTC 59.670 40.741 0.00 0.00 35.48 4.79
3083 3274 7.156673 GGTGATGGTGTATATGTAAATACGGT 58.843 38.462 0.00 0.00 35.48 4.83
3084 3275 6.309494 CGGTGATGGTGTATATGTAAATACGG 59.691 42.308 0.00 0.00 35.48 4.02
3189 3384 2.419990 CCGGATACAAGGAAGATGCACA 60.420 50.000 0.00 0.00 0.00 4.57
3217 3414 2.120312 ACTAGCTAGCCCCCTCTTTTC 58.880 52.381 20.91 0.00 0.00 2.29
3237 3434 0.457166 CGCAGTTGGACCGTCGATAA 60.457 55.000 0.00 0.00 0.00 1.75
3242 3442 3.712881 GTGCGCAGTTGGACCGTC 61.713 66.667 12.22 0.00 0.00 4.79
3245 3445 1.999071 TTGTTGTGCGCAGTTGGACC 61.999 55.000 12.22 0.00 0.00 4.46
3278 3478 4.449068 CGAAACATCTCTTGCAACAGTAGT 59.551 41.667 0.00 0.00 0.00 2.73
3279 3479 4.449068 ACGAAACATCTCTTGCAACAGTAG 59.551 41.667 0.00 0.00 0.00 2.57
3280 3480 4.377021 ACGAAACATCTCTTGCAACAGTA 58.623 39.130 0.00 0.00 0.00 2.74
3351 3551 2.498807 TGTAGATGAGCATCGACAGC 57.501 50.000 18.33 3.61 44.57 4.40
3357 3557 7.137426 GGTTTTCATTCATGTAGATGAGCATC 58.863 38.462 2.46 2.27 39.81 3.91
3376 3576 4.864704 TCCATTAGCAAACAGGGTTTTC 57.135 40.909 0.00 0.00 0.00 2.29
3431 3631 1.868997 CAAGTGCAATTCGCGTCCT 59.131 52.632 5.77 0.00 46.97 3.85
3534 3753 9.314321 CCACGAATTAATCCTATATATCCACAC 57.686 37.037 0.00 0.00 0.00 3.82
3599 3845 1.593006 CAGTTACATCGGCGATCCAAC 59.407 52.381 21.25 23.53 0.00 3.77
3681 3929 4.957327 AGATATCGGGAATCCTAACTAGCC 59.043 45.833 0.00 0.00 0.00 3.93
3755 4005 7.617041 ACTAGTTCTCAATCCAAACAATAGC 57.383 36.000 0.00 0.00 0.00 2.97
3849 4309 6.953189 GCAATATTGGATTAACAACGTTTTGC 59.047 34.615 17.02 3.81 36.00 3.68
3850 4310 7.116948 TGGCAATATTGGATTAACAACGTTTTG 59.883 33.333 17.02 0.00 38.83 2.44
3891 4351 5.646692 TGGAGGAACATTAGGGATTTAGG 57.353 43.478 0.00 0.00 0.00 2.69
3892 4352 6.717084 GGATTGGAGGAACATTAGGGATTTAG 59.283 42.308 0.00 0.00 0.00 1.85
3893 4353 6.411554 GGGATTGGAGGAACATTAGGGATTTA 60.412 42.308 0.00 0.00 0.00 1.40
3894 4354 5.458595 GGATTGGAGGAACATTAGGGATTT 58.541 41.667 0.00 0.00 0.00 2.17
3895 4355 4.140924 GGGATTGGAGGAACATTAGGGATT 60.141 45.833 0.00 0.00 0.00 3.01
3896 4356 3.399305 GGGATTGGAGGAACATTAGGGAT 59.601 47.826 0.00 0.00 0.00 3.85
3897 4357 2.783510 GGGATTGGAGGAACATTAGGGA 59.216 50.000 0.00 0.00 0.00 4.20
3898 4358 2.513738 TGGGATTGGAGGAACATTAGGG 59.486 50.000 0.00 0.00 0.00 3.53
3923 4383 2.817901 AGAACTAGTGCGTGTTTCGTT 58.182 42.857 0.00 0.00 42.13 3.85
3924 4384 2.503920 AGAACTAGTGCGTGTTTCGT 57.496 45.000 0.00 0.00 42.13 3.85
3972 4435 8.553696 CGTGTACTAGACTGGTTTACAATTTTT 58.446 33.333 0.00 0.00 0.00 1.94
3973 4436 7.927629 TCGTGTACTAGACTGGTTTACAATTTT 59.072 33.333 0.00 0.00 0.00 1.82
3974 4437 7.436118 TCGTGTACTAGACTGGTTTACAATTT 58.564 34.615 0.00 0.00 0.00 1.82
3975 4438 6.985117 TCGTGTACTAGACTGGTTTACAATT 58.015 36.000 0.00 0.00 0.00 2.32
3976 4439 6.208204 ACTCGTGTACTAGACTGGTTTACAAT 59.792 38.462 0.00 0.00 0.00 2.71
4083 4553 3.259876 AGCAACAACAATTGATGGCAGAT 59.740 39.130 18.61 5.22 34.42 2.90
4085 4555 2.734606 CAGCAACAACAATTGATGGCAG 59.265 45.455 18.61 7.58 41.28 4.85
4110 4580 6.293735 CGTCTTAATTAAGCACACCTTTTCCA 60.294 38.462 18.68 0.00 34.95 3.53
4128 4598 3.062099 GCAAGTTGCGATGATCGTCTTAA 59.938 43.478 16.83 4.54 42.81 1.85
4153 4623 4.047059 CCCAGCCAAGCAGCAACG 62.047 66.667 0.00 0.00 34.23 4.10
4169 4639 0.322008 CCACTCTTCAGTTCCAGCCC 60.322 60.000 0.00 0.00 0.00 5.19
4206 4676 1.111116 ACGACGACCTGTCCCTTTGA 61.111 55.000 0.00 0.00 45.23 2.69
4238 4708 2.437002 GGATGCCCGGCGTTTGTA 60.437 61.111 5.36 0.00 0.00 2.41
4341 4820 0.325577 TGCTGACCTCCTCCTGCATA 60.326 55.000 0.00 0.00 0.00 3.14
4389 4868 1.077930 TCTTGGAGAGGCATGCAGC 60.078 57.895 21.36 10.57 44.65 5.25
4449 4928 6.983906 AAAAAGACACTTCATTCATTCCCT 57.016 33.333 0.00 0.00 0.00 4.20
4508 4987 0.039074 ACGGTGAAAGAGAGAGCACG 60.039 55.000 0.00 0.00 32.24 5.34
4509 4988 1.269831 ACACGGTGAAAGAGAGAGCAC 60.270 52.381 16.29 0.00 0.00 4.40
4512 4991 6.565234 ACATATTACACGGTGAAAGAGAGAG 58.435 40.000 16.29 0.00 0.00 3.20
4513 4992 6.525578 ACATATTACACGGTGAAAGAGAGA 57.474 37.500 16.29 0.00 0.00 3.10
4523 5002 5.293324 CACACTGCATTACATATTACACGGT 59.707 40.000 0.00 0.00 0.00 4.83
4635 5114 9.278734 CTCTGCTACGTAATACATACACATATG 57.721 37.037 0.00 0.00 43.46 1.78
4680 5168 2.096406 CACGTACGTGCATGCAGC 59.904 61.111 32.93 14.94 45.96 5.25
4689 5177 2.161410 TCGCAGGTTATTACACGTACGT 59.839 45.455 16.72 16.72 0.00 3.57
4690 5178 2.780014 CTCGCAGGTTATTACACGTACG 59.220 50.000 15.01 15.01 0.00 3.67
4691 5179 2.533129 GCTCGCAGGTTATTACACGTAC 59.467 50.000 0.00 0.00 0.00 3.67
4692 5180 2.424601 AGCTCGCAGGTTATTACACGTA 59.575 45.455 0.00 0.00 0.00 3.57
4805 5293 1.827399 GACCAAAGCCCAGAGACCGA 61.827 60.000 0.00 0.00 0.00 4.69
4809 5297 0.843309 TTGTGACCAAAGCCCAGAGA 59.157 50.000 0.00 0.00 0.00 3.10
4819 5307 3.592059 GGCGAGTATAGTTTGTGACCAA 58.408 45.455 0.00 0.00 0.00 3.67
4881 5371 7.652524 TTATGCCATTGATTAGCCTTACAAA 57.347 32.000 0.00 0.00 0.00 2.83
4895 5385 8.098286 ACCCATATGATCAAATTTATGCCATTG 58.902 33.333 3.65 0.00 0.00 2.82
4899 5392 9.423061 GTTAACCCATATGATCAAATTTATGCC 57.577 33.333 3.65 0.00 0.00 4.40
5086 5582 4.986659 ACGTGATAAAATATAGCCGACCAC 59.013 41.667 0.00 0.00 0.00 4.16
5147 5643 0.102844 TGGGCGTATGTAAGCGGTAC 59.897 55.000 0.00 0.00 0.00 3.34
5257 5754 7.491682 CATTATACTTCCCCATTCTGTTTTGG 58.508 38.462 0.00 0.00 0.00 3.28
5395 5892 5.366768 AGGAGGAAGAATGACATCGGAAATA 59.633 40.000 0.00 0.00 0.00 1.40
5442 5939 4.662961 GCTTTGCCCAACCACGCC 62.663 66.667 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.