Multiple sequence alignment - TraesCS7A01G262400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G262400 chr7A 100.000 4047 0 0 1 4047 258368468 258372514 0.000000e+00 7474.0
1 TraesCS7A01G262400 chr7A 96.220 291 10 1 3700 3989 667348470 667348760 3.660000e-130 475.0
2 TraesCS7A01G262400 chr7A 95.548 292 11 2 3697 3987 5638050 5638340 2.200000e-127 466.0
3 TraesCS7A01G262400 chr7B 92.423 2613 113 32 9 2553 216089403 216086808 0.000000e+00 3650.0
4 TraesCS7A01G262400 chr7B 95.430 941 26 7 2554 3492 216086756 216085831 0.000000e+00 1483.0
5 TraesCS7A01G262400 chr7B 80.541 370 49 15 179 535 107085948 107086307 3.100000e-66 263.0
6 TraesCS7A01G262400 chr7B 77.958 431 54 29 330 743 735007556 735007150 8.750000e-57 231.0
7 TraesCS7A01G262400 chr7B 83.465 127 5 4 3572 3685 216085676 216085553 1.990000e-18 104.0
8 TraesCS7A01G262400 chr7B 85.000 100 7 2 645 744 707825133 707825042 1.200000e-15 95.3
9 TraesCS7A01G262400 chr7D 93.380 2296 78 24 303 2556 239776545 239774282 0.000000e+00 3330.0
10 TraesCS7A01G262400 chr7D 96.358 604 17 3 2898 3500 239773915 239773316 0.000000e+00 989.0
11 TraesCS7A01G262400 chr7D 98.101 316 5 1 2554 2869 239774232 239773918 2.130000e-152 549.0
12 TraesCS7A01G262400 chr7D 91.919 99 4 1 3528 3626 239773197 239773103 7.060000e-28 135.0
13 TraesCS7A01G262400 chr1A 97.552 286 7 0 3702 3987 545902789 545902504 1.310000e-134 490.0
14 TraesCS7A01G262400 chr1A 95.890 292 11 1 3700 3990 398055749 398055458 4.730000e-129 472.0
15 TraesCS7A01G262400 chr1A 96.181 288 10 1 3702 3988 259176433 259176146 1.700000e-128 470.0
16 TraesCS7A01G262400 chr2A 96.167 287 10 1 3703 3988 183770700 183770414 6.120000e-128 468.0
17 TraesCS7A01G262400 chr2A 93.898 295 16 2 3700 3992 648138722 648138428 1.030000e-120 444.0
18 TraesCS7A01G262400 chr6A 95.470 287 12 1 3702 3987 23879420 23879706 1.330000e-124 457.0
19 TraesCS7A01G262400 chr5A 93.667 300 16 2 3691 3987 703240876 703241175 2.870000e-121 446.0
20 TraesCS7A01G262400 chr1B 82.514 366 49 12 169 529 92585836 92586191 1.410000e-79 307.0
21 TraesCS7A01G262400 chr3A 82.209 326 49 7 213 531 606721676 606721999 5.150000e-69 272.0
22 TraesCS7A01G262400 chr3A 78.947 418 60 23 331 735 580810900 580810498 4.010000e-65 259.0
23 TraesCS7A01G262400 chr2D 82.067 329 49 9 211 534 362281675 362281998 5.150000e-69 272.0
24 TraesCS7A01G262400 chr2D 81.250 160 17 6 596 747 430227539 430227693 2.560000e-22 117.0
25 TraesCS7A01G262400 chr5B 78.043 419 62 25 267 665 480741381 480740973 1.880000e-58 237.0
26 TraesCS7A01G262400 chr6B 91.429 70 6 0 2378 2447 18765220 18765151 3.330000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G262400 chr7A 258368468 258372514 4046 False 7474.000000 7474 100.000000 1 4047 1 chr7A.!!$F2 4046
1 TraesCS7A01G262400 chr7B 216085553 216089403 3850 True 1745.666667 3650 90.439333 9 3685 3 chr7B.!!$R3 3676
2 TraesCS7A01G262400 chr7D 239773103 239776545 3442 True 1250.750000 3330 94.939500 303 3626 4 chr7D.!!$R1 3323

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
762 797 1.137404 CGCCGCATCTCCCAAAAAG 59.863 57.895 0.00 0.0 0.00 2.27 F
1047 1111 0.242825 TCGTGCAGCACTACTACCAC 59.757 55.000 23.15 0.0 31.34 4.16 F
2216 2286 0.402861 TGGGAAAGAGGGGTGAGGTT 60.403 55.000 0.00 0.0 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 1731 0.250081 GAGATCCCAAGGACGATGCC 60.250 60.0 0.0 0.0 32.98 4.40 R
2845 2969 0.890683 CCATGCAACCTCTCAAACCC 59.109 55.0 0.0 0.0 0.00 4.11 R
3967 4220 0.035056 AGGGCTCATTCGGTTTGGAG 60.035 55.0 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
243 244 8.979817 TTTCTTTTGTTTGTTTTCGTTTTCAG 57.020 26.923 0.00 0.00 0.00 3.02
247 248 6.683090 TTGTTTGTTTTCGTTTTCAGTCTG 57.317 33.333 0.00 0.00 0.00 3.51
254 255 6.034470 TGTTTTCGTTTTCAGTCTGCATTTTC 59.966 34.615 0.00 0.00 0.00 2.29
501 507 8.675504 TCAACATTTTTCAAATTCTTGTGCAAT 58.324 25.926 0.00 0.00 33.94 3.56
713 748 1.153804 GTTCGGTTCGCTCCTCTCC 60.154 63.158 0.00 0.00 0.00 3.71
762 797 1.137404 CGCCGCATCTCCCAAAAAG 59.863 57.895 0.00 0.00 0.00 2.27
948 989 2.034999 CCCAACGCCCAAAGCCTA 59.965 61.111 0.00 0.00 38.78 3.93
1047 1111 0.242825 TCGTGCAGCACTACTACCAC 59.757 55.000 23.15 0.00 31.34 4.16
1333 1397 3.506059 ATTCGCTCCATCTCGCCCG 62.506 63.158 0.00 0.00 0.00 6.13
1341 1405 4.458829 ATCTCGCCCGTCCCCTCA 62.459 66.667 0.00 0.00 0.00 3.86
1400 1464 7.877097 GCTGATCTGATCCTATTAACTGTGATT 59.123 37.037 14.71 0.00 0.00 2.57
1403 1467 9.646427 GATCTGATCCTATTAACTGTGATTACC 57.354 37.037 6.37 0.00 0.00 2.85
1433 1497 3.003897 TCCTTCGTTTGGTTCCAAATTCG 59.996 43.478 18.11 16.95 38.07 3.34
1450 1514 5.652744 AATTCGCAAATCATACGGTACTC 57.347 39.130 0.00 0.00 0.00 2.59
1460 1524 3.155501 CATACGGTACTCCTTCCCTAGG 58.844 54.545 0.06 0.06 46.27 3.02
1523 1588 2.398754 ATCATGATCGGTGGGGTCTA 57.601 50.000 1.18 0.00 0.00 2.59
1528 1593 2.473070 TGATCGGTGGGGTCTATCAAA 58.527 47.619 0.00 0.00 0.00 2.69
1608 1673 2.638480 TGTTTGGACCTGGAGACTTG 57.362 50.000 0.00 0.00 0.00 3.16
1649 1714 8.101419 ACATTTATAGATCTTTATCCCGGAACC 58.899 37.037 0.73 0.00 31.98 3.62
1666 1731 2.762535 ACCGTGTCATTCCCTTGTAG 57.237 50.000 0.00 0.00 0.00 2.74
1956 2021 5.883115 TGTTGTGTTTCCAAGTGTGATCTTA 59.117 36.000 0.00 0.00 0.00 2.10
1958 2023 7.068103 TGTTGTGTTTCCAAGTGTGATCTTAAT 59.932 33.333 0.00 0.00 0.00 1.40
1959 2024 7.581213 TGTGTTTCCAAGTGTGATCTTAATT 57.419 32.000 0.00 0.00 0.00 1.40
1992 2057 2.619074 GGCTCAGTTATGGCTCTTGGTT 60.619 50.000 0.00 0.00 0.00 3.67
2116 2181 4.260375 CGATATTTGCTGTAGTGTTGCTCC 60.260 45.833 0.00 0.00 0.00 4.70
2121 2190 2.878406 TGCTGTAGTGTTGCTCCTTTTC 59.122 45.455 0.00 0.00 0.00 2.29
2136 2206 8.635765 TGCTCCTTTTCTTAATTTGTGATACT 57.364 30.769 0.00 0.00 0.00 2.12
2216 2286 0.402861 TGGGAAAGAGGGGTGAGGTT 60.403 55.000 0.00 0.00 0.00 3.50
2217 2287 1.132332 TGGGAAAGAGGGGTGAGGTTA 60.132 52.381 0.00 0.00 0.00 2.85
2244 2314 7.194112 TGTTCCAGAGTCATATGTTGGATTA 57.806 36.000 16.12 9.42 37.74 1.75
2289 2359 8.862325 TCTATTGAAGTTTCATTGCTTCCTTA 57.138 30.769 0.00 0.00 40.07 2.69
2376 2446 8.106348 GTGGTCGTTTAGAATAACAAATACTCG 58.894 37.037 0.00 0.00 0.00 4.18
2469 2540 2.696707 ACGGGATGGAGCGAGTATAAAA 59.303 45.455 0.00 0.00 0.00 1.52
2475 2546 6.465084 GGATGGAGCGAGTATAAAACCTATT 58.535 40.000 0.00 0.00 0.00 1.73
2517 2588 3.500680 CACCCGCTGTTTATGTGTAGTTT 59.499 43.478 0.00 0.00 0.00 2.66
2537 2608 7.787725 AGTTTTATCTTAAATAGGTCGCTGG 57.212 36.000 0.00 0.00 0.00 4.85
2566 2690 6.997476 TGATACATGCTATAATTGCAAGTCCA 59.003 34.615 1.02 0.00 44.01 4.02
2632 2756 9.619316 TTGATGCACATGTAAGTAATTTGTAAC 57.381 29.630 0.00 0.00 0.00 2.50
2787 2911 8.754080 AGTGTAGCTCTTTAATTCACTATGTCT 58.246 33.333 0.00 0.00 33.78 3.41
2845 2969 2.440539 AGCAGGTCTGTGTCTTAACG 57.559 50.000 0.00 0.00 0.00 3.18
2873 2997 4.263462 TGAGAGGTTGCATGGAAGTACATT 60.263 41.667 0.00 0.00 0.00 2.71
2924 3049 7.526142 AGGGAAATTTTCTTAGTTGTCCTTC 57.474 36.000 8.93 0.00 0.00 3.46
2926 3051 7.730332 AGGGAAATTTTCTTAGTTGTCCTTCAT 59.270 33.333 8.93 0.00 0.00 2.57
3057 3182 2.169978 ACTATGGTTAAGGAAGGGCGAC 59.830 50.000 0.00 0.00 0.00 5.19
3058 3183 6.443251 AACTATGGTTAAGGAAGGGCGACC 62.443 50.000 0.00 0.00 42.15 4.79
3147 3275 2.614057 AGACTCTTTGTTTGTTCGCCAG 59.386 45.455 0.00 0.00 0.00 4.85
3201 3329 2.981921 TGATAGGCATCCACCAGATCT 58.018 47.619 0.00 0.00 30.59 2.75
3375 3503 8.523658 GTTTCTTCCCTTGCTCAGTTAATATTT 58.476 33.333 0.00 0.00 0.00 1.40
3436 3564 8.510243 AAAAATATCCCTGCAATTTTGGATTC 57.490 30.769 6.77 0.00 38.52 2.52
3442 3570 5.307716 TCCCTGCAATTTTGGATTCTTTTCT 59.692 36.000 0.00 0.00 0.00 2.52
3469 3598 1.641140 CTGCAGACGAACGCAAACA 59.359 52.632 8.42 0.00 37.76 2.83
3516 3752 2.037251 AGAACTAAAAGCAGCCGTCTGA 59.963 45.455 0.00 0.00 42.95 3.27
3526 3762 0.107017 AGCCGTCTGAATTGGGATGG 60.107 55.000 9.83 9.83 40.51 3.51
3549 3794 0.935196 AAACGTGAAAGTGGCTCGAC 59.065 50.000 0.00 0.00 0.00 4.20
3584 3829 3.739300 GCAGCTAGTAAACGTGAAAGTGA 59.261 43.478 0.00 0.00 0.00 3.41
3597 3842 1.521423 GAAAGTGACTCGACAACCACG 59.479 52.381 0.00 0.00 34.93 4.94
3656 3909 3.563223 AGCCCATCTTCATCATCCTTTG 58.437 45.455 0.00 0.00 0.00 2.77
3658 3911 4.166725 AGCCCATCTTCATCATCCTTTGTA 59.833 41.667 0.00 0.00 0.00 2.41
3672 3925 2.427506 CTTTGTAGGAAGTGCCACTCC 58.572 52.381 0.00 1.33 40.02 3.85
3680 3933 1.282157 GAAGTGCCACTCCACCCTATT 59.718 52.381 0.00 0.00 36.38 1.73
3685 3938 4.348168 AGTGCCACTCCACCCTATTATAAG 59.652 45.833 0.00 0.00 36.38 1.73
3686 3939 3.072476 TGCCACTCCACCCTATTATAAGC 59.928 47.826 0.00 0.00 0.00 3.09
3687 3940 3.328050 GCCACTCCACCCTATTATAAGCT 59.672 47.826 0.00 0.00 0.00 3.74
3688 3941 4.202472 GCCACTCCACCCTATTATAAGCTT 60.202 45.833 3.48 3.48 0.00 3.74
3689 3942 5.690364 GCCACTCCACCCTATTATAAGCTTT 60.690 44.000 3.20 0.00 0.00 3.51
3690 3943 6.465321 GCCACTCCACCCTATTATAAGCTTTA 60.465 42.308 3.20 0.00 0.00 1.85
3691 3944 7.690256 CCACTCCACCCTATTATAAGCTTTAT 58.310 38.462 3.20 0.00 0.00 1.40
3692 3945 8.164070 CCACTCCACCCTATTATAAGCTTTATT 58.836 37.037 3.20 0.00 0.00 1.40
3693 3946 9.574516 CACTCCACCCTATTATAAGCTTTATTT 57.425 33.333 3.20 0.00 0.00 1.40
3694 3947 9.794719 ACTCCACCCTATTATAAGCTTTATTTC 57.205 33.333 3.20 0.00 0.00 2.17
3695 3948 9.793259 CTCCACCCTATTATAAGCTTTATTTCA 57.207 33.333 3.20 0.00 0.00 2.69
3706 3959 6.857437 AAGCTTTATTTCATGTTAAGGCCT 57.143 33.333 0.00 0.00 32.55 5.19
3707 3960 6.456795 AGCTTTATTTCATGTTAAGGCCTC 57.543 37.500 5.23 0.00 32.55 4.70
3708 3961 5.951747 AGCTTTATTTCATGTTAAGGCCTCA 59.048 36.000 5.23 0.00 32.55 3.86
3709 3962 6.608808 AGCTTTATTTCATGTTAAGGCCTCAT 59.391 34.615 5.23 1.78 32.55 2.90
3710 3963 7.124750 AGCTTTATTTCATGTTAAGGCCTCATT 59.875 33.333 5.23 0.00 32.55 2.57
3711 3964 7.436376 GCTTTATTTCATGTTAAGGCCTCATTC 59.564 37.037 5.23 0.00 0.00 2.67
3712 3965 4.963276 TTTCATGTTAAGGCCTCATTCG 57.037 40.909 5.23 0.00 0.00 3.34
3713 3966 2.917933 TCATGTTAAGGCCTCATTCGG 58.082 47.619 5.23 0.00 0.00 4.30
3714 3967 2.238646 TCATGTTAAGGCCTCATTCGGT 59.761 45.455 5.23 0.00 0.00 4.69
3715 3968 2.871096 TGTTAAGGCCTCATTCGGTT 57.129 45.000 5.23 0.00 0.00 4.44
3716 3969 3.149005 TGTTAAGGCCTCATTCGGTTT 57.851 42.857 5.23 0.00 0.00 3.27
3717 3970 2.817258 TGTTAAGGCCTCATTCGGTTTG 59.183 45.455 5.23 0.00 0.00 2.93
3718 3971 3.078837 GTTAAGGCCTCATTCGGTTTGA 58.921 45.455 5.23 0.00 0.00 2.69
3719 3972 2.286365 AAGGCCTCATTCGGTTTGAA 57.714 45.000 5.23 0.00 41.81 2.69
3720 3973 1.826385 AGGCCTCATTCGGTTTGAAG 58.174 50.000 0.00 0.00 40.65 3.02
3721 3974 0.811281 GGCCTCATTCGGTTTGAAGG 59.189 55.000 0.00 0.00 40.65 3.46
3722 3975 1.613255 GGCCTCATTCGGTTTGAAGGA 60.613 52.381 0.00 0.00 44.52 3.36
3723 3976 2.369394 GCCTCATTCGGTTTGAAGGAT 58.631 47.619 0.00 0.00 45.46 3.24
3724 3977 2.755103 GCCTCATTCGGTTTGAAGGATT 59.245 45.455 0.00 0.00 45.46 3.01
3725 3978 3.193479 GCCTCATTCGGTTTGAAGGATTT 59.807 43.478 0.00 0.00 45.46 2.17
3726 3979 4.321974 GCCTCATTCGGTTTGAAGGATTTT 60.322 41.667 0.00 0.00 45.46 1.82
3727 3980 5.783111 CCTCATTCGGTTTGAAGGATTTTT 58.217 37.500 0.00 0.00 45.46 1.94
3728 3981 6.571537 GCCTCATTCGGTTTGAAGGATTTTTA 60.572 38.462 0.00 0.00 45.46 1.52
3729 3982 7.547227 CCTCATTCGGTTTGAAGGATTTTTAT 58.453 34.615 0.00 0.00 45.46 1.40
3730 3983 8.682710 CCTCATTCGGTTTGAAGGATTTTTATA 58.317 33.333 0.00 0.00 45.46 0.98
3731 3984 9.722056 CTCATTCGGTTTGAAGGATTTTTATAG 57.278 33.333 0.00 0.00 45.46 1.31
3732 3985 8.682710 TCATTCGGTTTGAAGGATTTTTATAGG 58.317 33.333 0.00 0.00 42.08 2.57
3733 3986 8.682710 CATTCGGTTTGAAGGATTTTTATAGGA 58.317 33.333 0.00 0.00 40.79 2.94
3734 3987 8.638629 TTCGGTTTGAAGGATTTTTATAGGAA 57.361 30.769 0.00 0.00 31.44 3.36
3735 3988 8.638629 TCGGTTTGAAGGATTTTTATAGGAAA 57.361 30.769 0.00 0.00 0.00 3.13
3736 3989 9.080097 TCGGTTTGAAGGATTTTTATAGGAAAA 57.920 29.630 0.00 0.00 33.46 2.29
3737 3990 9.699703 CGGTTTGAAGGATTTTTATAGGAAAAA 57.300 29.630 0.00 0.00 32.75 1.94
3741 3994 9.685828 TTGAAGGATTTTTATAGGAAAAACGTG 57.314 29.630 0.00 0.00 32.75 4.49
3742 3995 8.301002 TGAAGGATTTTTATAGGAAAAACGTGG 58.699 33.333 0.00 0.00 32.75 4.94
3743 3996 7.165460 AGGATTTTTATAGGAAAAACGTGGG 57.835 36.000 0.00 0.00 32.75 4.61
3744 3997 6.949463 AGGATTTTTATAGGAAAAACGTGGGA 59.051 34.615 0.00 0.00 32.75 4.37
3745 3998 7.452189 AGGATTTTTATAGGAAAAACGTGGGAA 59.548 33.333 0.00 0.00 32.75 3.97
3746 3999 7.543172 GGATTTTTATAGGAAAAACGTGGGAAC 59.457 37.037 0.00 0.00 32.75 3.62
3747 4000 6.956202 TTTTATAGGAAAAACGTGGGAACA 57.044 33.333 0.00 0.00 38.70 3.18
3748 4001 6.956202 TTTATAGGAAAAACGTGGGAACAA 57.044 33.333 0.00 0.00 46.06 2.83
3749 4002 6.563222 TTATAGGAAAAACGTGGGAACAAG 57.437 37.500 0.00 0.00 46.06 3.16
3750 4003 2.028876 AGGAAAAACGTGGGAACAAGG 58.971 47.619 0.00 0.00 46.06 3.61
3751 4004 2.025898 GGAAAAACGTGGGAACAAGGA 58.974 47.619 0.00 0.00 46.06 3.36
3752 4005 2.626266 GGAAAAACGTGGGAACAAGGAT 59.374 45.455 0.00 0.00 46.06 3.24
3753 4006 3.069016 GGAAAAACGTGGGAACAAGGATT 59.931 43.478 0.00 0.00 46.06 3.01
3754 4007 4.295870 GAAAAACGTGGGAACAAGGATTC 58.704 43.478 0.00 0.00 46.06 2.52
3755 4008 1.905637 AACGTGGGAACAAGGATTCC 58.094 50.000 0.00 0.00 46.52 3.01
3764 4017 5.745312 GGAACAAGGATTCCAAGGAAAAT 57.255 39.130 5.52 0.00 46.49 1.82
3765 4018 6.114187 GGAACAAGGATTCCAAGGAAAATT 57.886 37.500 5.52 0.00 46.49 1.82
3766 4019 6.533730 GGAACAAGGATTCCAAGGAAAATTT 58.466 36.000 5.52 0.00 46.49 1.82
3767 4020 6.998074 GGAACAAGGATTCCAAGGAAAATTTT 59.002 34.615 2.28 2.28 46.49 1.82
3768 4021 7.173218 GGAACAAGGATTCCAAGGAAAATTTTC 59.827 37.037 20.51 20.51 46.49 2.29
3769 4022 7.379059 ACAAGGATTCCAAGGAAAATTTTCT 57.621 32.000 25.86 12.41 37.69 2.52
3770 4023 8.491045 ACAAGGATTCCAAGGAAAATTTTCTA 57.509 30.769 25.86 8.15 37.69 2.10
3771 4024 9.104713 ACAAGGATTCCAAGGAAAATTTTCTAT 57.895 29.630 25.86 14.84 37.69 1.98
3791 4044 8.771920 TTCTATATATGCATTCGGTTTGTAGG 57.228 34.615 3.54 0.00 0.00 3.18
3792 4045 8.129496 TCTATATATGCATTCGGTTTGTAGGA 57.871 34.615 3.54 0.00 0.00 2.94
3793 4046 8.590204 TCTATATATGCATTCGGTTTGTAGGAA 58.410 33.333 3.54 0.00 0.00 3.36
3794 4047 9.214957 CTATATATGCATTCGGTTTGTAGGAAA 57.785 33.333 3.54 0.00 0.00 3.13
3795 4048 6.959639 ATATGCATTCGGTTTGTAGGAAAT 57.040 33.333 3.54 0.00 0.00 2.17
3796 4049 4.433186 TGCATTCGGTTTGTAGGAAATG 57.567 40.909 0.00 0.00 0.00 2.32
3797 4050 3.179048 GCATTCGGTTTGTAGGAAATGC 58.821 45.455 0.00 0.00 0.00 3.56
3798 4051 3.425404 CATTCGGTTTGTAGGAAATGCG 58.575 45.455 0.00 0.00 0.00 4.73
3799 4052 2.172851 TCGGTTTGTAGGAAATGCGT 57.827 45.000 0.00 0.00 0.00 5.24
3800 4053 3.316071 TCGGTTTGTAGGAAATGCGTA 57.684 42.857 0.00 0.00 0.00 4.42
3801 4054 3.661944 TCGGTTTGTAGGAAATGCGTAA 58.338 40.909 0.00 0.00 0.00 3.18
3802 4055 4.063689 TCGGTTTGTAGGAAATGCGTAAA 58.936 39.130 0.00 0.00 0.00 2.01
3803 4056 4.152759 TCGGTTTGTAGGAAATGCGTAAAG 59.847 41.667 0.00 0.00 0.00 1.85
3804 4057 4.670735 CGGTTTGTAGGAAATGCGTAAAGG 60.671 45.833 0.00 0.00 0.00 3.11
3805 4058 4.456566 GGTTTGTAGGAAATGCGTAAAGGA 59.543 41.667 0.00 0.00 0.00 3.36
3806 4059 5.048573 GGTTTGTAGGAAATGCGTAAAGGAA 60.049 40.000 0.00 0.00 0.00 3.36
3807 4060 6.349860 GGTTTGTAGGAAATGCGTAAAGGAAT 60.350 38.462 0.00 0.00 0.00 3.01
3808 4061 6.827586 TTGTAGGAAATGCGTAAAGGAATT 57.172 33.333 0.00 0.00 0.00 2.17
3809 4062 6.827586 TGTAGGAAATGCGTAAAGGAATTT 57.172 33.333 0.00 0.00 0.00 1.82
3810 4063 6.848451 TGTAGGAAATGCGTAAAGGAATTTC 58.152 36.000 7.34 7.34 0.00 2.17
3811 4064 4.981794 AGGAAATGCGTAAAGGAATTTCG 58.018 39.130 9.07 0.00 35.22 3.46
3812 4065 4.457949 AGGAAATGCGTAAAGGAATTTCGT 59.542 37.500 9.07 7.44 34.66 3.85
3813 4066 4.557301 GGAAATGCGTAAAGGAATTTCGTG 59.443 41.667 9.07 0.00 34.66 4.35
3814 4067 3.757745 ATGCGTAAAGGAATTTCGTGG 57.242 42.857 0.00 0.00 34.66 4.94
3815 4068 1.807742 TGCGTAAAGGAATTTCGTGGG 59.192 47.619 0.00 0.00 34.66 4.61
3816 4069 2.078392 GCGTAAAGGAATTTCGTGGGA 58.922 47.619 0.00 0.00 34.66 4.37
3817 4070 2.485038 GCGTAAAGGAATTTCGTGGGAA 59.515 45.455 0.00 0.00 34.66 3.97
3818 4071 3.128068 GCGTAAAGGAATTTCGTGGGAAT 59.872 43.478 0.00 0.00 34.66 3.01
3819 4072 4.333372 GCGTAAAGGAATTTCGTGGGAATA 59.667 41.667 0.00 0.00 34.66 1.75
3820 4073 5.728621 GCGTAAAGGAATTTCGTGGGAATAC 60.729 44.000 0.00 0.00 34.66 1.89
3821 4074 4.957759 AAAGGAATTTCGTGGGAATACG 57.042 40.909 0.00 0.00 44.98 3.06
3831 4084 4.124238 TCGTGGGAATACGATTCATTTCC 58.876 43.478 0.00 0.00 46.94 3.13
3832 4085 4.127171 CGTGGGAATACGATTCATTTCCT 58.873 43.478 0.00 0.00 46.46 3.36
3833 4086 5.069383 TCGTGGGAATACGATTCATTTCCTA 59.931 40.000 0.00 0.00 46.94 2.94
3834 4087 5.932303 CGTGGGAATACGATTCATTTCCTAT 59.068 40.000 0.00 0.00 46.46 2.57
3835 4088 6.128553 CGTGGGAATACGATTCATTTCCTATG 60.129 42.308 0.00 0.00 46.46 2.23
3836 4089 5.705441 TGGGAATACGATTCATTTCCTATGC 59.295 40.000 0.00 0.00 38.15 3.14
3837 4090 5.940470 GGGAATACGATTCATTTCCTATGCT 59.060 40.000 0.00 0.00 38.15 3.79
3838 4091 6.431234 GGGAATACGATTCATTTCCTATGCTT 59.569 38.462 0.00 0.00 38.15 3.91
3839 4092 7.040409 GGGAATACGATTCATTTCCTATGCTTT 60.040 37.037 0.00 0.00 38.15 3.51
3840 4093 8.352942 GGAATACGATTCATTTCCTATGCTTTT 58.647 33.333 0.00 0.00 35.74 2.27
3843 4096 9.778741 ATACGATTCATTTCCTATGCTTTTAGA 57.221 29.630 0.00 0.00 0.00 2.10
3844 4097 8.147642 ACGATTCATTTCCTATGCTTTTAGAG 57.852 34.615 0.00 0.00 0.00 2.43
3845 4098 7.227512 ACGATTCATTTCCTATGCTTTTAGAGG 59.772 37.037 0.00 0.00 0.00 3.69
3846 4099 7.442364 CGATTCATTTCCTATGCTTTTAGAGGA 59.558 37.037 0.00 0.00 36.34 3.71
3847 4100 9.125026 GATTCATTTCCTATGCTTTTAGAGGAA 57.875 33.333 0.00 0.00 44.06 3.36
3854 4107 8.732746 TCCTATGCTTTTAGAGGAAATTACAC 57.267 34.615 0.00 0.00 35.26 2.90
3855 4108 8.325787 TCCTATGCTTTTAGAGGAAATTACACA 58.674 33.333 0.00 0.00 35.26 3.72
3856 4109 9.125026 CCTATGCTTTTAGAGGAAATTACACAT 57.875 33.333 0.00 0.00 30.53 3.21
3858 4111 7.391148 TGCTTTTAGAGGAAATTACACATCC 57.609 36.000 0.00 0.00 0.00 3.51
3859 4112 6.945435 TGCTTTTAGAGGAAATTACACATCCA 59.055 34.615 0.00 0.00 35.62 3.41
3860 4113 7.450014 TGCTTTTAGAGGAAATTACACATCCAA 59.550 33.333 0.00 0.00 35.62 3.53
3861 4114 8.470002 GCTTTTAGAGGAAATTACACATCCAAT 58.530 33.333 0.00 0.00 35.62 3.16
3863 4116 9.527157 TTTTAGAGGAAATTACACATCCAATCA 57.473 29.630 0.00 0.00 35.62 2.57
3864 4117 9.527157 TTTAGAGGAAATTACACATCCAATCAA 57.473 29.630 0.00 0.00 35.62 2.57
3865 4118 9.527157 TTAGAGGAAATTACACATCCAATCAAA 57.473 29.630 0.00 0.00 35.62 2.69
3866 4119 8.059798 AGAGGAAATTACACATCCAATCAAAG 57.940 34.615 0.00 0.00 35.62 2.77
3867 4120 6.633856 AGGAAATTACACATCCAATCAAAGC 58.366 36.000 0.00 0.00 35.62 3.51
3868 4121 6.438425 AGGAAATTACACATCCAATCAAAGCT 59.562 34.615 0.00 0.00 35.62 3.74
3869 4122 6.753744 GGAAATTACACATCCAATCAAAGCTC 59.246 38.462 0.00 0.00 33.30 4.09
3870 4123 6.839124 AATTACACATCCAATCAAAGCTCA 57.161 33.333 0.00 0.00 0.00 4.26
3871 4124 7.414222 AATTACACATCCAATCAAAGCTCAT 57.586 32.000 0.00 0.00 0.00 2.90
3872 4125 6.839124 TTACACATCCAATCAAAGCTCATT 57.161 33.333 0.00 0.00 0.00 2.57
3873 4126 5.733620 ACACATCCAATCAAAGCTCATTT 57.266 34.783 0.00 0.00 0.00 2.32
3874 4127 6.105397 ACACATCCAATCAAAGCTCATTTT 57.895 33.333 0.00 0.00 0.00 1.82
3875 4128 5.929992 ACACATCCAATCAAAGCTCATTTTG 59.070 36.000 0.00 0.00 38.97 2.44
3876 4129 4.933400 ACATCCAATCAAAGCTCATTTTGC 59.067 37.500 0.00 0.00 37.83 3.68
3877 4130 3.577667 TCCAATCAAAGCTCATTTTGCG 58.422 40.909 0.00 0.00 37.83 4.85
3878 4131 2.093152 CCAATCAAAGCTCATTTTGCGC 59.907 45.455 0.00 0.00 37.83 6.09
3879 4132 1.621107 ATCAAAGCTCATTTTGCGCG 58.379 45.000 0.00 0.00 37.83 6.86
3880 4133 0.310543 TCAAAGCTCATTTTGCGCGT 59.689 45.000 8.43 0.00 37.83 6.01
3881 4134 1.533299 TCAAAGCTCATTTTGCGCGTA 59.467 42.857 8.43 0.00 37.83 4.42
3882 4135 1.906966 CAAAGCTCATTTTGCGCGTAG 59.093 47.619 8.43 0.00 32.55 3.51
3883 4136 0.447801 AAGCTCATTTTGCGCGTAGG 59.552 50.000 8.43 0.00 32.55 3.18
3884 4137 0.391130 AGCTCATTTTGCGCGTAGGA 60.391 50.000 8.43 0.00 32.55 2.94
3885 4138 0.446222 GCTCATTTTGCGCGTAGGAA 59.554 50.000 8.43 2.45 0.00 3.36
3886 4139 1.790481 GCTCATTTTGCGCGTAGGAAC 60.790 52.381 8.43 0.00 0.00 3.62
3898 4151 2.450609 GTAGGAACGAGGCAAGTCAA 57.549 50.000 0.00 0.00 0.00 3.18
3899 4152 2.973945 GTAGGAACGAGGCAAGTCAAT 58.026 47.619 0.00 0.00 0.00 2.57
3900 4153 2.568623 AGGAACGAGGCAAGTCAATT 57.431 45.000 0.00 0.00 0.00 2.32
3901 4154 2.427506 AGGAACGAGGCAAGTCAATTC 58.572 47.619 0.00 0.00 0.00 2.17
3902 4155 1.468914 GGAACGAGGCAAGTCAATTCC 59.531 52.381 0.00 0.00 0.00 3.01
3903 4156 2.427506 GAACGAGGCAAGTCAATTCCT 58.572 47.619 0.00 0.00 0.00 3.36
3904 4157 2.568623 ACGAGGCAAGTCAATTCCTT 57.431 45.000 0.00 0.00 0.00 3.36
3905 4158 3.695830 ACGAGGCAAGTCAATTCCTTA 57.304 42.857 0.00 0.00 0.00 2.69
3906 4159 3.600388 ACGAGGCAAGTCAATTCCTTAG 58.400 45.455 0.00 0.00 0.00 2.18
3907 4160 2.939103 CGAGGCAAGTCAATTCCTTAGG 59.061 50.000 0.00 0.00 0.00 2.69
3908 4161 3.282885 GAGGCAAGTCAATTCCTTAGGG 58.717 50.000 0.00 0.00 0.00 3.53
3909 4162 2.649816 AGGCAAGTCAATTCCTTAGGGT 59.350 45.455 0.00 0.00 0.00 4.34
3910 4163 2.755103 GGCAAGTCAATTCCTTAGGGTG 59.245 50.000 0.00 0.00 0.00 4.61
3911 4164 2.755103 GCAAGTCAATTCCTTAGGGTGG 59.245 50.000 0.00 0.00 0.00 4.61
3912 4165 2.755103 CAAGTCAATTCCTTAGGGTGGC 59.245 50.000 0.00 0.00 0.00 5.01
3913 4166 1.992557 AGTCAATTCCTTAGGGTGGCA 59.007 47.619 0.00 0.00 0.00 4.92
3914 4167 2.378547 AGTCAATTCCTTAGGGTGGCAA 59.621 45.455 0.00 0.00 0.00 4.52
3915 4168 2.755103 GTCAATTCCTTAGGGTGGCAAG 59.245 50.000 0.00 0.00 0.00 4.01
3916 4169 2.378547 TCAATTCCTTAGGGTGGCAAGT 59.621 45.455 0.00 0.00 0.00 3.16
3917 4170 2.493278 CAATTCCTTAGGGTGGCAAGTG 59.507 50.000 0.00 0.00 0.00 3.16
3918 4171 0.251165 TTCCTTAGGGTGGCAAGTGC 60.251 55.000 0.00 0.00 41.14 4.40
3932 4185 4.660789 GCAAGTGCCATCCTATCAAATT 57.339 40.909 0.00 0.00 34.31 1.82
3933 4186 4.614946 GCAAGTGCCATCCTATCAAATTC 58.385 43.478 0.00 0.00 34.31 2.17
3934 4187 4.500375 GCAAGTGCCATCCTATCAAATTCC 60.500 45.833 0.00 0.00 34.31 3.01
3935 4188 4.803329 AGTGCCATCCTATCAAATTCCT 57.197 40.909 0.00 0.00 0.00 3.36
3936 4189 5.912149 AGTGCCATCCTATCAAATTCCTA 57.088 39.130 0.00 0.00 0.00 2.94
3937 4190 6.460103 AGTGCCATCCTATCAAATTCCTAT 57.540 37.500 0.00 0.00 0.00 2.57
3938 4191 7.574021 AGTGCCATCCTATCAAATTCCTATA 57.426 36.000 0.00 0.00 0.00 1.31
3939 4192 7.398024 AGTGCCATCCTATCAAATTCCTATAC 58.602 38.462 0.00 0.00 0.00 1.47
3940 4193 7.238514 AGTGCCATCCTATCAAATTCCTATACT 59.761 37.037 0.00 0.00 0.00 2.12
3941 4194 8.540388 GTGCCATCCTATCAAATTCCTATACTA 58.460 37.037 0.00 0.00 0.00 1.82
3942 4195 8.540388 TGCCATCCTATCAAATTCCTATACTAC 58.460 37.037 0.00 0.00 0.00 2.73
3943 4196 8.763601 GCCATCCTATCAAATTCCTATACTACT 58.236 37.037 0.00 0.00 0.00 2.57
3947 4200 9.892444 TCCTATCAAATTCCTATACTACTCCAA 57.108 33.333 0.00 0.00 0.00 3.53
3952 4205 9.847224 TCAAATTCCTATACTACTCCAAATTCC 57.153 33.333 0.00 0.00 0.00 3.01
3953 4206 9.853177 CAAATTCCTATACTACTCCAAATTCCT 57.147 33.333 0.00 0.00 0.00 3.36
3956 4209 7.756395 TCCTATACTACTCCAAATTCCTACG 57.244 40.000 0.00 0.00 0.00 3.51
3957 4210 7.293073 TCCTATACTACTCCAAATTCCTACGT 58.707 38.462 0.00 0.00 0.00 3.57
3958 4211 7.781693 TCCTATACTACTCCAAATTCCTACGTT 59.218 37.037 0.00 0.00 0.00 3.99
3959 4212 8.419442 CCTATACTACTCCAAATTCCTACGTTT 58.581 37.037 0.00 0.00 0.00 3.60
3962 4215 7.472334 ACTACTCCAAATTCCTACGTTTAGA 57.528 36.000 0.00 0.00 0.00 2.10
3963 4216 8.075761 ACTACTCCAAATTCCTACGTTTAGAT 57.924 34.615 0.00 0.00 0.00 1.98
3964 4217 8.537858 ACTACTCCAAATTCCTACGTTTAGATT 58.462 33.333 0.00 0.00 0.00 2.40
3965 4218 9.379791 CTACTCCAAATTCCTACGTTTAGATTT 57.620 33.333 0.00 0.00 0.00 2.17
3966 4219 8.265165 ACTCCAAATTCCTACGTTTAGATTTC 57.735 34.615 0.00 0.00 0.00 2.17
3967 4220 7.336176 ACTCCAAATTCCTACGTTTAGATTTCC 59.664 37.037 0.00 0.00 0.00 3.13
3968 4221 7.399634 TCCAAATTCCTACGTTTAGATTTCCT 58.600 34.615 0.00 0.00 0.00 3.36
3969 4222 7.551617 TCCAAATTCCTACGTTTAGATTTCCTC 59.448 37.037 0.00 0.00 0.00 3.71
3970 4223 7.201705 CCAAATTCCTACGTTTAGATTTCCTCC 60.202 40.741 0.00 0.00 0.00 4.30
3971 4224 6.555463 ATTCCTACGTTTAGATTTCCTCCA 57.445 37.500 0.00 0.00 0.00 3.86
3972 4225 6.363167 TTCCTACGTTTAGATTTCCTCCAA 57.637 37.500 0.00 0.00 0.00 3.53
3973 4226 6.363167 TCCTACGTTTAGATTTCCTCCAAA 57.637 37.500 0.00 0.00 0.00 3.28
3974 4227 6.168389 TCCTACGTTTAGATTTCCTCCAAAC 58.832 40.000 0.00 0.00 0.00 2.93
3975 4228 5.353400 CCTACGTTTAGATTTCCTCCAAACC 59.647 44.000 0.00 0.00 0.00 3.27
3976 4229 3.749609 ACGTTTAGATTTCCTCCAAACCG 59.250 43.478 0.00 0.00 0.00 4.44
3977 4230 3.998341 CGTTTAGATTTCCTCCAAACCGA 59.002 43.478 0.00 0.00 0.00 4.69
3978 4231 4.453136 CGTTTAGATTTCCTCCAAACCGAA 59.547 41.667 0.00 0.00 0.00 4.30
3979 4232 5.123344 CGTTTAGATTTCCTCCAAACCGAAT 59.877 40.000 0.00 0.00 0.00 3.34
3980 4233 6.322491 GTTTAGATTTCCTCCAAACCGAATG 58.678 40.000 0.00 0.00 0.00 2.67
3981 4234 4.301072 AGATTTCCTCCAAACCGAATGA 57.699 40.909 0.00 0.00 0.00 2.57
3982 4235 4.265073 AGATTTCCTCCAAACCGAATGAG 58.735 43.478 0.00 0.00 0.00 2.90
3983 4236 1.821216 TTCCTCCAAACCGAATGAGC 58.179 50.000 0.00 0.00 0.00 4.26
3984 4237 0.035439 TCCTCCAAACCGAATGAGCC 60.035 55.000 0.00 0.00 0.00 4.70
3985 4238 1.032114 CCTCCAAACCGAATGAGCCC 61.032 60.000 0.00 0.00 0.00 5.19
3986 4239 0.035056 CTCCAAACCGAATGAGCCCT 60.035 55.000 0.00 0.00 0.00 5.19
3987 4240 1.209504 CTCCAAACCGAATGAGCCCTA 59.790 52.381 0.00 0.00 0.00 3.53
3988 4241 1.631388 TCCAAACCGAATGAGCCCTAA 59.369 47.619 0.00 0.00 0.00 2.69
3989 4242 2.017049 CCAAACCGAATGAGCCCTAAG 58.983 52.381 0.00 0.00 0.00 2.18
3990 4243 1.401905 CAAACCGAATGAGCCCTAAGC 59.598 52.381 0.00 0.00 44.25 3.09
4001 4254 0.523519 GCCCTAAGCTTGAGTGTTGC 59.476 55.000 9.86 0.00 38.99 4.17
4002 4255 1.896220 CCCTAAGCTTGAGTGTTGCA 58.104 50.000 9.86 0.00 0.00 4.08
4003 4256 2.440409 CCCTAAGCTTGAGTGTTGCAT 58.560 47.619 9.86 0.00 0.00 3.96
4004 4257 3.609853 CCCTAAGCTTGAGTGTTGCATA 58.390 45.455 9.86 0.00 0.00 3.14
4005 4258 3.375299 CCCTAAGCTTGAGTGTTGCATAC 59.625 47.826 9.86 0.00 0.00 2.39
4006 4259 4.256920 CCTAAGCTTGAGTGTTGCATACT 58.743 43.478 9.86 4.00 0.00 2.12
4007 4260 4.331168 CCTAAGCTTGAGTGTTGCATACTC 59.669 45.833 19.37 19.37 43.73 2.59
4008 4261 2.704572 AGCTTGAGTGTTGCATACTCC 58.295 47.619 21.86 11.42 43.00 3.85
4009 4262 2.038952 AGCTTGAGTGTTGCATACTCCA 59.961 45.455 21.86 14.00 43.00 3.86
4010 4263 3.012518 GCTTGAGTGTTGCATACTCCAT 58.987 45.455 21.86 0.00 43.00 3.41
4011 4264 3.441572 GCTTGAGTGTTGCATACTCCATT 59.558 43.478 21.86 0.00 43.00 3.16
4012 4265 4.635765 GCTTGAGTGTTGCATACTCCATTA 59.364 41.667 21.86 7.06 43.00 1.90
4013 4266 5.447818 GCTTGAGTGTTGCATACTCCATTAC 60.448 44.000 21.86 9.04 43.00 1.89
4014 4267 5.159273 TGAGTGTTGCATACTCCATTACA 57.841 39.130 21.86 3.97 43.00 2.41
4015 4268 4.935205 TGAGTGTTGCATACTCCATTACAC 59.065 41.667 21.86 14.34 43.00 2.90
4016 4269 4.905429 AGTGTTGCATACTCCATTACACA 58.095 39.130 13.31 0.00 37.46 3.72
4017 4270 5.312895 AGTGTTGCATACTCCATTACACAA 58.687 37.500 13.31 0.00 37.46 3.33
4018 4271 5.412594 AGTGTTGCATACTCCATTACACAAG 59.587 40.000 13.31 0.00 37.46 3.16
4019 4272 5.411361 GTGTTGCATACTCCATTACACAAGA 59.589 40.000 7.46 0.00 35.66 3.02
4020 4273 6.094048 GTGTTGCATACTCCATTACACAAGAT 59.906 38.462 7.46 0.00 35.66 2.40
4021 4274 6.316140 TGTTGCATACTCCATTACACAAGATC 59.684 38.462 0.00 0.00 0.00 2.75
4022 4275 6.239217 TGCATACTCCATTACACAAGATCT 57.761 37.500 0.00 0.00 0.00 2.75
4023 4276 6.653020 TGCATACTCCATTACACAAGATCTT 58.347 36.000 0.88 0.88 0.00 2.40
4024 4277 7.112122 TGCATACTCCATTACACAAGATCTTT 58.888 34.615 4.86 0.00 0.00 2.52
4025 4278 7.611467 TGCATACTCCATTACACAAGATCTTTT 59.389 33.333 4.86 0.00 0.00 2.27
4026 4279 9.109393 GCATACTCCATTACACAAGATCTTTTA 57.891 33.333 4.86 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 9.454859 ACAGGAAACCAAACAAATATTTGAAAA 57.545 25.926 30.18 0.00 41.28 2.29
243 244 8.575454 GTTTTTGACATATACGAAAATGCAGAC 58.425 33.333 0.00 0.00 34.54 3.51
306 308 8.461222 TGAATAAGCATTCCTACAATGTTGAAG 58.539 33.333 0.00 0.00 39.97 3.02
631 664 2.525368 GGGATACACCAGCCTGTTTTT 58.475 47.619 0.00 0.00 41.20 1.94
762 797 2.750888 CGCTGGGCTAGTTTTCCGC 61.751 63.158 0.00 0.00 0.00 5.54
789 825 4.530857 CTGGGCCCGTCGATGGAC 62.531 72.222 25.65 13.97 39.89 4.02
948 989 0.674895 GTTTGGAGCTCTGGATGCGT 60.675 55.000 14.64 0.00 35.28 5.24
1047 1111 2.654912 GCGGTTGGAGTCGAACGTG 61.655 63.158 11.33 7.93 39.57 4.49
1333 1397 5.574970 AGAGAAATATTGGATGAGGGGAC 57.425 43.478 0.00 0.00 0.00 4.46
1341 1405 8.655935 AGAACCAAACAAGAGAAATATTGGAT 57.344 30.769 9.16 0.00 39.69 3.41
1433 1497 3.808174 GGAAGGAGTACCGTATGATTTGC 59.192 47.826 0.00 0.00 41.83 3.68
1460 1524 2.095461 GAAATTGAGGGCCTTCCACTC 58.905 52.381 13.07 5.68 38.24 3.51
1528 1593 9.781425 AGTGATGAGACAGGGATATAGATTAAT 57.219 33.333 0.00 0.00 0.00 1.40
1608 1673 7.431249 TCTATAAATGTCCACTTGTCGGATAC 58.569 38.462 0.00 0.00 34.32 2.24
1649 1714 1.338674 TGCCTACAAGGGAATGACACG 60.339 52.381 0.00 0.00 35.37 4.49
1666 1731 0.250081 GAGATCCCAAGGACGATGCC 60.250 60.000 0.00 0.00 32.98 4.40
1992 2057 2.457813 ACATATGGCCAAATCCAGCA 57.542 45.000 10.96 0.00 39.89 4.41
2216 2286 8.491045 TCCAACATATGACTCTGGAACATATA 57.509 34.615 10.38 0.00 38.20 0.86
2217 2287 7.379059 TCCAACATATGACTCTGGAACATAT 57.621 36.000 10.38 0.00 38.20 1.78
2244 2314 1.178276 AGAAGTGCGCTAGCTACACT 58.822 50.000 25.99 25.99 46.27 3.55
2289 2359 4.159135 GTGCATGGTGAAAGGAATTCTGAT 59.841 41.667 5.23 0.00 38.92 2.90
2336 2406 9.976511 TCTAAACGACCACCTAATTATGAATAG 57.023 33.333 0.00 0.00 0.00 1.73
2376 2446 5.598769 ACAACTTATATTACGGGACAGAGC 58.401 41.667 0.00 0.00 0.00 4.09
2439 2510 2.767505 GCTCCATCCCGTAATGTAAGG 58.232 52.381 0.00 0.00 0.00 2.69
2475 2546 5.988561 GGGTGAATTGTTTCATTAGCAAACA 59.011 36.000 0.00 0.00 43.49 2.83
2517 2588 6.474140 TCACCAGCGACCTATTTAAGATAA 57.526 37.500 0.00 0.00 0.00 1.75
2537 2608 8.509690 ACTTGCAATTATAGCATGTATCATCAC 58.490 33.333 0.00 0.00 45.06 3.06
2632 2756 2.505819 AGTGGCTAAGAGGTGTAATGGG 59.494 50.000 0.00 0.00 0.00 4.00
2712 2836 6.157645 ACATTGATCAAGGACCATCTAAGAGT 59.842 38.462 25.68 0.00 0.00 3.24
2787 2911 4.853468 TCCTAATAGGCAAATGGACACA 57.147 40.909 0.34 0.00 34.61 3.72
2845 2969 0.890683 CCATGCAACCTCTCAAACCC 59.109 55.000 0.00 0.00 0.00 4.11
2873 2997 8.150296 TGAGATCAGAAAGACAAGAACATAACA 58.850 33.333 0.00 0.00 0.00 2.41
2924 3049 7.693969 AGAAAAGACTCCAAATCCTTGTATG 57.306 36.000 0.00 0.00 0.00 2.39
2926 3051 7.664318 GGTTAGAAAAGACTCCAAATCCTTGTA 59.336 37.037 0.00 0.00 0.00 2.41
3059 3184 1.518903 AAGTTCTTTGCCGCCAGAGC 61.519 55.000 0.00 0.00 0.00 4.09
3067 3195 2.306847 TCCCTGAACAAGTTCTTTGCC 58.693 47.619 13.49 0.00 40.59 4.52
3147 3275 4.644044 TTTTGCGATAAATTGCACAAGC 57.356 36.364 4.32 0.00 46.28 4.01
3201 3329 6.234177 ACATGGGAAACACAAAACAAAAGAA 58.766 32.000 0.00 0.00 0.00 2.52
3291 3419 1.133513 ACAAAACCCAGAGATGCCACA 60.134 47.619 0.00 0.00 0.00 4.17
3436 3564 1.196354 CTGCAGCCGAGTTCAGAAAAG 59.804 52.381 0.00 0.00 0.00 2.27
3442 3570 2.049156 CGTCTGCAGCCGAGTTCA 60.049 61.111 12.64 0.00 0.00 3.18
3469 3598 1.417890 ACGAGCAGCCATATTAAGCCT 59.582 47.619 0.00 0.00 0.00 4.58
3485 3634 3.002246 TGCTTTTAGTTCTGCACAACGAG 59.998 43.478 0.00 0.00 0.00 4.18
3516 3752 1.545582 CACGTTTCTGCCATCCCAATT 59.454 47.619 0.00 0.00 0.00 2.32
3526 3762 0.663153 AGCCACTTTCACGTTTCTGC 59.337 50.000 0.00 0.00 0.00 4.26
3549 3794 4.468095 ACTAGCTGCGTTTGTTTAGTTG 57.532 40.909 0.00 0.00 0.00 3.16
3584 3829 2.029073 CCAGCGTGGTTGTCGAGT 59.971 61.111 0.00 0.00 31.35 4.18
3597 3842 4.216257 AGTTATGAAATGTGTCACACCAGC 59.784 41.667 8.08 0.00 32.73 4.85
3607 3852 5.301045 AGGATCATGGCAGTTATGAAATGTG 59.699 40.000 0.00 0.00 38.01 3.21
3608 3853 5.452255 AGGATCATGGCAGTTATGAAATGT 58.548 37.500 0.00 0.00 38.01 2.71
3656 3909 0.036294 GGTGGAGTGGCACTTCCTAC 60.036 60.000 22.93 17.16 34.67 3.18
3658 3911 2.529744 GGGTGGAGTGGCACTTCCT 61.530 63.158 22.93 0.00 34.67 3.36
3680 3933 9.640952 AGGCCTTAACATGAAATAAAGCTTATA 57.359 29.630 0.00 0.00 0.00 0.98
3685 3938 6.207691 TGAGGCCTTAACATGAAATAAAGC 57.792 37.500 6.77 1.57 0.00 3.51
3686 3939 7.645340 CGAATGAGGCCTTAACATGAAATAAAG 59.355 37.037 6.77 0.00 0.00 1.85
3687 3940 7.416213 CCGAATGAGGCCTTAACATGAAATAAA 60.416 37.037 6.77 0.00 0.00 1.40
3688 3941 6.039270 CCGAATGAGGCCTTAACATGAAATAA 59.961 38.462 6.77 0.00 0.00 1.40
3689 3942 5.530915 CCGAATGAGGCCTTAACATGAAATA 59.469 40.000 6.77 0.00 0.00 1.40
3690 3943 4.339247 CCGAATGAGGCCTTAACATGAAAT 59.661 41.667 6.77 0.00 0.00 2.17
3691 3944 3.694072 CCGAATGAGGCCTTAACATGAAA 59.306 43.478 6.77 0.00 0.00 2.69
3692 3945 3.278574 CCGAATGAGGCCTTAACATGAA 58.721 45.455 6.77 0.00 0.00 2.57
3693 3946 2.238646 ACCGAATGAGGCCTTAACATGA 59.761 45.455 6.77 0.00 33.69 3.07
3694 3947 2.643551 ACCGAATGAGGCCTTAACATG 58.356 47.619 6.77 0.00 33.69 3.21
3695 3948 3.366052 AACCGAATGAGGCCTTAACAT 57.634 42.857 6.77 2.44 33.69 2.71
3696 3949 2.817258 CAAACCGAATGAGGCCTTAACA 59.183 45.455 6.77 0.00 33.69 2.41
3697 3950 3.078837 TCAAACCGAATGAGGCCTTAAC 58.921 45.455 6.77 0.34 33.69 2.01
3698 3951 3.426787 TCAAACCGAATGAGGCCTTAA 57.573 42.857 6.77 0.00 33.69 1.85
3699 3952 3.343617 CTTCAAACCGAATGAGGCCTTA 58.656 45.455 6.77 1.66 31.69 2.69
3700 3953 2.162681 CTTCAAACCGAATGAGGCCTT 58.837 47.619 6.77 0.00 31.69 4.35
3701 3954 1.614317 CCTTCAAACCGAATGAGGCCT 60.614 52.381 3.86 3.86 31.69 5.19
3702 3955 0.811281 CCTTCAAACCGAATGAGGCC 59.189 55.000 0.00 0.00 31.69 5.19
3703 3956 1.821216 TCCTTCAAACCGAATGAGGC 58.179 50.000 0.00 0.00 31.69 4.70
3704 3957 5.391312 AAAATCCTTCAAACCGAATGAGG 57.609 39.130 0.00 0.00 32.60 3.86
3705 3958 9.722056 CTATAAAAATCCTTCAAACCGAATGAG 57.278 33.333 0.00 0.00 32.60 2.90
3706 3959 8.682710 CCTATAAAAATCCTTCAAACCGAATGA 58.317 33.333 0.00 0.00 33.47 2.57
3707 3960 8.682710 TCCTATAAAAATCCTTCAAACCGAATG 58.317 33.333 0.00 0.00 31.69 2.67
3708 3961 8.817092 TCCTATAAAAATCCTTCAAACCGAAT 57.183 30.769 0.00 0.00 31.69 3.34
3709 3962 8.638629 TTCCTATAAAAATCCTTCAAACCGAA 57.361 30.769 0.00 0.00 0.00 4.30
3710 3963 8.638629 TTTCCTATAAAAATCCTTCAAACCGA 57.361 30.769 0.00 0.00 0.00 4.69
3711 3964 9.699703 TTTTTCCTATAAAAATCCTTCAAACCG 57.300 29.630 0.00 0.00 0.00 4.44
3715 3968 9.685828 CACGTTTTTCCTATAAAAATCCTTCAA 57.314 29.630 0.00 0.00 32.55 2.69
3716 3969 8.301002 CCACGTTTTTCCTATAAAAATCCTTCA 58.699 33.333 0.00 0.00 32.55 3.02
3717 3970 7.758076 CCCACGTTTTTCCTATAAAAATCCTTC 59.242 37.037 0.00 0.00 32.55 3.46
3718 3971 7.452189 TCCCACGTTTTTCCTATAAAAATCCTT 59.548 33.333 0.00 0.00 32.55 3.36
3719 3972 6.949463 TCCCACGTTTTTCCTATAAAAATCCT 59.051 34.615 0.00 0.00 32.55 3.24
3720 3973 7.160547 TCCCACGTTTTTCCTATAAAAATCC 57.839 36.000 0.00 0.00 32.55 3.01
3721 3974 8.083462 TGTTCCCACGTTTTTCCTATAAAAATC 58.917 33.333 0.00 0.00 32.55 2.17
3722 3975 7.953752 TGTTCCCACGTTTTTCCTATAAAAAT 58.046 30.769 0.00 0.00 32.55 1.82
3723 3976 7.344095 TGTTCCCACGTTTTTCCTATAAAAA 57.656 32.000 0.00 0.00 0.00 1.94
3724 3977 6.956202 TGTTCCCACGTTTTTCCTATAAAA 57.044 33.333 0.00 0.00 0.00 1.52
3725 3978 6.016108 CCTTGTTCCCACGTTTTTCCTATAAA 60.016 38.462 0.00 0.00 0.00 1.40
3726 3979 5.474189 CCTTGTTCCCACGTTTTTCCTATAA 59.526 40.000 0.00 0.00 0.00 0.98
3727 3980 5.005094 CCTTGTTCCCACGTTTTTCCTATA 58.995 41.667 0.00 0.00 0.00 1.31
3728 3981 3.824443 CCTTGTTCCCACGTTTTTCCTAT 59.176 43.478 0.00 0.00 0.00 2.57
3729 3982 3.117963 TCCTTGTTCCCACGTTTTTCCTA 60.118 43.478 0.00 0.00 0.00 2.94
3730 3983 2.028876 CCTTGTTCCCACGTTTTTCCT 58.971 47.619 0.00 0.00 0.00 3.36
3731 3984 2.025898 TCCTTGTTCCCACGTTTTTCC 58.974 47.619 0.00 0.00 0.00 3.13
3732 3985 4.295870 GAATCCTTGTTCCCACGTTTTTC 58.704 43.478 0.00 0.00 0.00 2.29
3733 3986 3.069016 GGAATCCTTGTTCCCACGTTTTT 59.931 43.478 0.00 0.00 41.48 1.94
3734 3987 2.626266 GGAATCCTTGTTCCCACGTTTT 59.374 45.455 0.00 0.00 41.48 2.43
3735 3988 2.235891 GGAATCCTTGTTCCCACGTTT 58.764 47.619 0.00 0.00 41.48 3.60
3736 3989 1.144093 TGGAATCCTTGTTCCCACGTT 59.856 47.619 0.00 0.00 45.73 3.99
3737 3990 0.768622 TGGAATCCTTGTTCCCACGT 59.231 50.000 0.00 0.00 45.73 4.49
3738 3991 1.812571 CTTGGAATCCTTGTTCCCACG 59.187 52.381 0.00 0.00 45.73 4.94
3739 3992 2.171003 CCTTGGAATCCTTGTTCCCAC 58.829 52.381 0.00 0.00 45.73 4.61
3740 3993 2.069775 TCCTTGGAATCCTTGTTCCCA 58.930 47.619 0.00 0.00 45.73 4.37
3741 3994 2.899303 TCCTTGGAATCCTTGTTCCC 57.101 50.000 0.00 0.00 45.73 3.97
3742 3995 5.745312 ATTTTCCTTGGAATCCTTGTTCC 57.255 39.130 0.00 0.00 46.35 3.62
3743 3996 7.933577 AGAAAATTTTCCTTGGAATCCTTGTTC 59.066 33.333 24.01 3.77 37.92 3.18
3744 3997 7.805163 AGAAAATTTTCCTTGGAATCCTTGTT 58.195 30.769 24.01 0.58 37.92 2.83
3745 3998 7.379059 AGAAAATTTTCCTTGGAATCCTTGT 57.621 32.000 24.01 1.18 37.92 3.16
3765 4018 9.214957 CCTACAAACCGAATGCATATATAGAAA 57.785 33.333 0.00 0.00 0.00 2.52
3766 4019 8.590204 TCCTACAAACCGAATGCATATATAGAA 58.410 33.333 0.00 0.00 0.00 2.10
3767 4020 8.129496 TCCTACAAACCGAATGCATATATAGA 57.871 34.615 0.00 0.00 0.00 1.98
3768 4021 8.771920 TTCCTACAAACCGAATGCATATATAG 57.228 34.615 0.00 0.00 0.00 1.31
3769 4022 9.733556 ATTTCCTACAAACCGAATGCATATATA 57.266 29.630 0.00 0.00 0.00 0.86
3770 4023 8.514594 CATTTCCTACAAACCGAATGCATATAT 58.485 33.333 0.00 0.00 0.00 0.86
3771 4024 7.521423 GCATTTCCTACAAACCGAATGCATATA 60.521 37.037 0.00 0.00 45.14 0.86
3772 4025 6.735694 GCATTTCCTACAAACCGAATGCATAT 60.736 38.462 0.00 0.00 45.14 1.78
3773 4026 5.449862 GCATTTCCTACAAACCGAATGCATA 60.450 40.000 0.00 0.00 45.14 3.14
3774 4027 4.677779 GCATTTCCTACAAACCGAATGCAT 60.678 41.667 12.42 0.00 45.14 3.96
3775 4028 3.366883 GCATTTCCTACAAACCGAATGCA 60.367 43.478 12.42 0.00 45.14 3.96
3776 4029 3.179048 GCATTTCCTACAAACCGAATGC 58.821 45.455 3.51 3.51 41.43 3.56
3777 4030 3.119990 ACGCATTTCCTACAAACCGAATG 60.120 43.478 0.00 0.00 0.00 2.67
3778 4031 3.078837 ACGCATTTCCTACAAACCGAAT 58.921 40.909 0.00 0.00 0.00 3.34
3779 4032 2.496111 ACGCATTTCCTACAAACCGAA 58.504 42.857 0.00 0.00 0.00 4.30
3780 4033 2.172851 ACGCATTTCCTACAAACCGA 57.827 45.000 0.00 0.00 0.00 4.69
3781 4034 4.399978 CTTTACGCATTTCCTACAAACCG 58.600 43.478 0.00 0.00 0.00 4.44
3782 4035 4.456566 TCCTTTACGCATTTCCTACAAACC 59.543 41.667 0.00 0.00 0.00 3.27
3783 4036 5.616488 TCCTTTACGCATTTCCTACAAAC 57.384 39.130 0.00 0.00 0.00 2.93
3784 4037 6.827586 ATTCCTTTACGCATTTCCTACAAA 57.172 33.333 0.00 0.00 0.00 2.83
3785 4038 6.827586 AATTCCTTTACGCATTTCCTACAA 57.172 33.333 0.00 0.00 0.00 2.41
3786 4039 6.402766 CGAAATTCCTTTACGCATTTCCTACA 60.403 38.462 0.00 0.00 33.73 2.74
3787 4040 5.963586 CGAAATTCCTTTACGCATTTCCTAC 59.036 40.000 0.00 0.00 33.73 3.18
3788 4041 5.644636 ACGAAATTCCTTTACGCATTTCCTA 59.355 36.000 0.00 0.00 33.73 2.94
3789 4042 4.457949 ACGAAATTCCTTTACGCATTTCCT 59.542 37.500 0.00 0.00 33.73 3.36
3790 4043 4.557301 CACGAAATTCCTTTACGCATTTCC 59.443 41.667 0.00 0.00 33.73 3.13
3791 4044 4.557301 CCACGAAATTCCTTTACGCATTTC 59.443 41.667 0.00 0.00 33.88 2.17
3792 4045 4.481463 CCACGAAATTCCTTTACGCATTT 58.519 39.130 0.00 0.00 0.00 2.32
3793 4046 3.119637 CCCACGAAATTCCTTTACGCATT 60.120 43.478 0.00 0.00 0.00 3.56
3794 4047 2.422127 CCCACGAAATTCCTTTACGCAT 59.578 45.455 0.00 0.00 0.00 4.73
3795 4048 1.807742 CCCACGAAATTCCTTTACGCA 59.192 47.619 0.00 0.00 0.00 5.24
3796 4049 2.078392 TCCCACGAAATTCCTTTACGC 58.922 47.619 0.00 0.00 0.00 4.42
3797 4050 4.957759 ATTCCCACGAAATTCCTTTACG 57.042 40.909 0.00 0.00 0.00 3.18
3798 4051 5.803118 CGTATTCCCACGAAATTCCTTTAC 58.197 41.667 0.00 0.00 44.69 2.01
3800 4053 4.957759 CGTATTCCCACGAAATTCCTTT 57.042 40.909 0.00 0.00 44.69 3.11
3810 4063 4.127171 AGGAAATGAATCGTATTCCCACG 58.873 43.478 10.61 0.00 41.83 4.94
3811 4064 6.348540 GCATAGGAAATGAATCGTATTCCCAC 60.349 42.308 10.61 0.00 41.83 4.61
3812 4065 5.705441 GCATAGGAAATGAATCGTATTCCCA 59.295 40.000 10.61 1.98 41.83 4.37
3813 4066 5.940470 AGCATAGGAAATGAATCGTATTCCC 59.060 40.000 10.61 0.00 41.83 3.97
3814 4067 7.440523 AAGCATAGGAAATGAATCGTATTCC 57.559 36.000 7.76 7.76 41.32 3.01
3817 4070 9.778741 TCTAAAAGCATAGGAAATGAATCGTAT 57.221 29.630 0.00 0.00 32.23 3.06
3818 4071 9.261180 CTCTAAAAGCATAGGAAATGAATCGTA 57.739 33.333 0.00 0.00 0.00 3.43
3819 4072 7.227512 CCTCTAAAAGCATAGGAAATGAATCGT 59.772 37.037 0.00 0.00 0.00 3.73
3820 4073 7.442364 TCCTCTAAAAGCATAGGAAATGAATCG 59.558 37.037 0.00 0.00 35.20 3.34
3821 4074 8.682936 TCCTCTAAAAGCATAGGAAATGAATC 57.317 34.615 0.00 0.00 35.20 2.52
3828 4081 9.174166 GTGTAATTTCCTCTAAAAGCATAGGAA 57.826 33.333 0.00 0.00 44.41 3.36
3829 4082 8.325787 TGTGTAATTTCCTCTAAAAGCATAGGA 58.674 33.333 0.00 0.00 36.34 2.94
3830 4083 8.506168 TGTGTAATTTCCTCTAAAAGCATAGG 57.494 34.615 0.00 0.00 0.00 2.57
3832 4085 9.120538 GGATGTGTAATTTCCTCTAAAAGCATA 57.879 33.333 0.00 0.00 0.00 3.14
3833 4086 7.615365 TGGATGTGTAATTTCCTCTAAAAGCAT 59.385 33.333 0.00 0.00 0.00 3.79
3834 4087 6.945435 TGGATGTGTAATTTCCTCTAAAAGCA 59.055 34.615 0.00 0.00 0.00 3.91
3835 4088 7.391148 TGGATGTGTAATTTCCTCTAAAAGC 57.609 36.000 0.00 0.00 0.00 3.51
3837 4090 9.527157 TGATTGGATGTGTAATTTCCTCTAAAA 57.473 29.630 0.00 0.00 0.00 1.52
3838 4091 9.527157 TTGATTGGATGTGTAATTTCCTCTAAA 57.473 29.630 0.00 0.00 0.00 1.85
3839 4092 9.527157 TTTGATTGGATGTGTAATTTCCTCTAA 57.473 29.630 0.00 0.00 0.00 2.10
3840 4093 9.177608 CTTTGATTGGATGTGTAATTTCCTCTA 57.822 33.333 0.00 0.00 0.00 2.43
3841 4094 7.363268 GCTTTGATTGGATGTGTAATTTCCTCT 60.363 37.037 0.00 0.00 0.00 3.69
3842 4095 6.753744 GCTTTGATTGGATGTGTAATTTCCTC 59.246 38.462 0.00 0.00 0.00 3.71
3843 4096 6.438425 AGCTTTGATTGGATGTGTAATTTCCT 59.562 34.615 0.00 0.00 0.00 3.36
3844 4097 6.633856 AGCTTTGATTGGATGTGTAATTTCC 58.366 36.000 0.00 0.00 0.00 3.13
3845 4098 7.315142 TGAGCTTTGATTGGATGTGTAATTTC 58.685 34.615 0.00 0.00 0.00 2.17
3846 4099 7.230849 TGAGCTTTGATTGGATGTGTAATTT 57.769 32.000 0.00 0.00 0.00 1.82
3847 4100 6.839124 TGAGCTTTGATTGGATGTGTAATT 57.161 33.333 0.00 0.00 0.00 1.40
3848 4101 7.414222 AATGAGCTTTGATTGGATGTGTAAT 57.586 32.000 0.00 0.00 0.00 1.89
3849 4102 6.839124 AATGAGCTTTGATTGGATGTGTAA 57.161 33.333 0.00 0.00 0.00 2.41
3850 4103 6.839124 AAATGAGCTTTGATTGGATGTGTA 57.161 33.333 0.00 0.00 0.00 2.90
3851 4104 5.733620 AAATGAGCTTTGATTGGATGTGT 57.266 34.783 0.00 0.00 0.00 3.72
3852 4105 5.163893 GCAAAATGAGCTTTGATTGGATGTG 60.164 40.000 0.00 0.00 38.35 3.21
3853 4106 4.933400 GCAAAATGAGCTTTGATTGGATGT 59.067 37.500 0.00 0.00 38.35 3.06
3854 4107 4.032445 CGCAAAATGAGCTTTGATTGGATG 59.968 41.667 0.00 0.00 38.35 3.51
3855 4108 4.178540 CGCAAAATGAGCTTTGATTGGAT 58.821 39.130 0.00 0.00 38.35 3.41
3856 4109 3.577667 CGCAAAATGAGCTTTGATTGGA 58.422 40.909 0.00 0.00 38.35 3.53
3857 4110 2.093152 GCGCAAAATGAGCTTTGATTGG 59.907 45.455 0.30 0.00 40.12 3.16
3858 4111 2.222420 CGCGCAAAATGAGCTTTGATTG 60.222 45.455 8.75 0.26 41.12 2.67
3859 4112 1.987770 CGCGCAAAATGAGCTTTGATT 59.012 42.857 8.75 0.00 41.12 2.57
3860 4113 1.068333 ACGCGCAAAATGAGCTTTGAT 60.068 42.857 5.73 0.00 41.12 2.57
3861 4114 0.310543 ACGCGCAAAATGAGCTTTGA 59.689 45.000 5.73 0.00 41.12 2.69
3862 4115 1.906966 CTACGCGCAAAATGAGCTTTG 59.093 47.619 5.73 0.00 41.12 2.77
3863 4116 1.135689 CCTACGCGCAAAATGAGCTTT 60.136 47.619 5.73 0.00 41.12 3.51
3864 4117 0.447801 CCTACGCGCAAAATGAGCTT 59.552 50.000 5.73 0.00 41.12 3.74
3865 4118 0.391130 TCCTACGCGCAAAATGAGCT 60.391 50.000 5.73 0.00 41.12 4.09
3866 4119 0.446222 TTCCTACGCGCAAAATGAGC 59.554 50.000 5.73 0.00 39.86 4.26
3867 4120 1.526986 CGTTCCTACGCGCAAAATGAG 60.527 52.381 5.73 0.00 41.41 2.90
3868 4121 0.440758 CGTTCCTACGCGCAAAATGA 59.559 50.000 5.73 0.00 41.41 2.57
3869 4122 2.911198 CGTTCCTACGCGCAAAATG 58.089 52.632 5.73 0.00 41.41 2.32
3879 4132 2.450609 TTGACTTGCCTCGTTCCTAC 57.549 50.000 0.00 0.00 0.00 3.18
3880 4133 3.596214 GAATTGACTTGCCTCGTTCCTA 58.404 45.455 0.00 0.00 0.00 2.94
3881 4134 2.427506 GAATTGACTTGCCTCGTTCCT 58.572 47.619 0.00 0.00 0.00 3.36
3882 4135 1.468914 GGAATTGACTTGCCTCGTTCC 59.531 52.381 0.00 0.00 0.00 3.62
3883 4136 2.427506 AGGAATTGACTTGCCTCGTTC 58.572 47.619 0.00 0.00 0.00 3.95
3884 4137 2.568623 AGGAATTGACTTGCCTCGTT 57.431 45.000 0.00 0.00 0.00 3.85
3885 4138 2.568623 AAGGAATTGACTTGCCTCGT 57.431 45.000 0.00 0.00 0.00 4.18
3886 4139 2.939103 CCTAAGGAATTGACTTGCCTCG 59.061 50.000 2.97 0.00 0.00 4.63
3887 4140 3.282885 CCCTAAGGAATTGACTTGCCTC 58.717 50.000 2.97 0.00 33.47 4.70
3888 4141 2.649816 ACCCTAAGGAATTGACTTGCCT 59.350 45.455 2.97 0.00 36.73 4.75
3889 4142 2.755103 CACCCTAAGGAATTGACTTGCC 59.245 50.000 2.97 0.00 36.73 4.52
3890 4143 2.755103 CCACCCTAAGGAATTGACTTGC 59.245 50.000 2.97 0.00 36.73 4.01
3891 4144 2.755103 GCCACCCTAAGGAATTGACTTG 59.245 50.000 2.97 0.00 36.73 3.16
3892 4145 2.378547 TGCCACCCTAAGGAATTGACTT 59.621 45.455 0.00 0.00 36.73 3.01
3893 4146 1.992557 TGCCACCCTAAGGAATTGACT 59.007 47.619 0.00 0.00 36.73 3.41
3894 4147 2.507407 TGCCACCCTAAGGAATTGAC 57.493 50.000 0.00 0.00 36.73 3.18
3895 4148 2.378547 ACTTGCCACCCTAAGGAATTGA 59.621 45.455 0.00 0.00 36.73 2.57
3896 4149 2.493278 CACTTGCCACCCTAAGGAATTG 59.507 50.000 0.00 0.00 36.73 2.32
3897 4150 2.807676 CACTTGCCACCCTAAGGAATT 58.192 47.619 0.00 0.00 36.73 2.17
3898 4151 1.616994 GCACTTGCCACCCTAAGGAAT 60.617 52.381 0.00 0.00 33.82 3.01
3899 4152 0.251165 GCACTTGCCACCCTAAGGAA 60.251 55.000 0.00 0.00 33.82 3.36
3900 4153 1.378762 GCACTTGCCACCCTAAGGA 59.621 57.895 0.00 0.00 33.82 3.36
3901 4154 4.002797 GCACTTGCCACCCTAAGG 57.997 61.111 0.00 0.00 35.24 2.69
3911 4164 4.500375 GGAATTTGATAGGATGGCACTTGC 60.500 45.833 0.00 0.00 41.14 4.01
3912 4165 4.891756 AGGAATTTGATAGGATGGCACTTG 59.108 41.667 0.00 0.00 0.00 3.16
3913 4166 5.134725 AGGAATTTGATAGGATGGCACTT 57.865 39.130 0.00 0.00 0.00 3.16
3914 4167 4.803329 AGGAATTTGATAGGATGGCACT 57.197 40.909 0.00 0.00 0.00 4.40
3915 4168 7.398024 AGTATAGGAATTTGATAGGATGGCAC 58.602 38.462 0.00 0.00 0.00 5.01
3916 4169 7.574021 AGTATAGGAATTTGATAGGATGGCA 57.426 36.000 0.00 0.00 0.00 4.92
3917 4170 8.763601 AGTAGTATAGGAATTTGATAGGATGGC 58.236 37.037 0.00 0.00 0.00 4.40
3921 4174 9.892444 TTGGAGTAGTATAGGAATTTGATAGGA 57.108 33.333 0.00 0.00 0.00 2.94
3926 4179 9.847224 GGAATTTGGAGTAGTATAGGAATTTGA 57.153 33.333 0.00 0.00 0.00 2.69
3927 4180 9.853177 AGGAATTTGGAGTAGTATAGGAATTTG 57.147 33.333 0.00 0.00 0.00 2.32
3930 4183 8.804204 CGTAGGAATTTGGAGTAGTATAGGAAT 58.196 37.037 0.00 0.00 0.00 3.01
3931 4184 7.781693 ACGTAGGAATTTGGAGTAGTATAGGAA 59.218 37.037 0.00 0.00 0.00 3.36
3932 4185 7.293073 ACGTAGGAATTTGGAGTAGTATAGGA 58.707 38.462 0.00 0.00 0.00 2.94
3933 4186 7.521871 ACGTAGGAATTTGGAGTAGTATAGG 57.478 40.000 0.00 0.00 0.00 2.57
3936 4189 9.193806 TCTAAACGTAGGAATTTGGAGTAGTAT 57.806 33.333 0.00 0.00 0.00 2.12
3937 4190 8.579850 TCTAAACGTAGGAATTTGGAGTAGTA 57.420 34.615 0.00 0.00 0.00 1.82
3938 4191 7.472334 TCTAAACGTAGGAATTTGGAGTAGT 57.528 36.000 0.00 0.00 0.00 2.73
3939 4192 8.943909 AATCTAAACGTAGGAATTTGGAGTAG 57.056 34.615 0.00 0.00 30.13 2.57
3940 4193 9.374838 GAAATCTAAACGTAGGAATTTGGAGTA 57.625 33.333 0.00 0.00 30.13 2.59
3941 4194 7.336176 GGAAATCTAAACGTAGGAATTTGGAGT 59.664 37.037 0.00 0.00 30.13 3.85
3942 4195 7.553044 AGGAAATCTAAACGTAGGAATTTGGAG 59.447 37.037 0.00 0.00 30.13 3.86
3943 4196 7.399634 AGGAAATCTAAACGTAGGAATTTGGA 58.600 34.615 0.00 0.00 31.02 3.53
3944 4197 7.201705 GGAGGAAATCTAAACGTAGGAATTTGG 60.202 40.741 0.00 0.00 0.00 3.28
3945 4198 7.335924 TGGAGGAAATCTAAACGTAGGAATTTG 59.664 37.037 0.00 0.00 0.00 2.32
3946 4199 7.399634 TGGAGGAAATCTAAACGTAGGAATTT 58.600 34.615 0.00 0.00 0.00 1.82
3947 4200 6.954232 TGGAGGAAATCTAAACGTAGGAATT 58.046 36.000 0.00 0.00 0.00 2.17
3948 4201 6.555463 TGGAGGAAATCTAAACGTAGGAAT 57.445 37.500 0.00 0.00 0.00 3.01
3949 4202 6.363167 TTGGAGGAAATCTAAACGTAGGAA 57.637 37.500 0.00 0.00 0.00 3.36
3950 4203 6.168389 GTTTGGAGGAAATCTAAACGTAGGA 58.832 40.000 0.00 0.00 45.65 2.94
3951 4204 6.418585 GTTTGGAGGAAATCTAAACGTAGG 57.581 41.667 0.00 0.00 45.65 3.18
3957 4210 6.242396 TCATTCGGTTTGGAGGAAATCTAAA 58.758 36.000 0.00 0.00 36.16 1.85
3958 4211 5.811190 TCATTCGGTTTGGAGGAAATCTAA 58.189 37.500 0.00 0.00 0.00 2.10
3959 4212 5.428253 CTCATTCGGTTTGGAGGAAATCTA 58.572 41.667 0.00 0.00 0.00 1.98
3960 4213 4.265073 CTCATTCGGTTTGGAGGAAATCT 58.735 43.478 0.00 0.00 0.00 2.40
3961 4214 3.181496 GCTCATTCGGTTTGGAGGAAATC 60.181 47.826 0.00 0.00 0.00 2.17
3962 4215 2.755103 GCTCATTCGGTTTGGAGGAAAT 59.245 45.455 0.00 0.00 0.00 2.17
3963 4216 2.159382 GCTCATTCGGTTTGGAGGAAA 58.841 47.619 0.00 0.00 0.00 3.13
3964 4217 1.613255 GGCTCATTCGGTTTGGAGGAA 60.613 52.381 0.00 0.00 0.00 3.36
3965 4218 0.035439 GGCTCATTCGGTTTGGAGGA 60.035 55.000 0.00 0.00 0.00 3.71
3966 4219 1.032114 GGGCTCATTCGGTTTGGAGG 61.032 60.000 0.00 0.00 0.00 4.30
3967 4220 0.035056 AGGGCTCATTCGGTTTGGAG 60.035 55.000 0.00 0.00 0.00 3.86
3968 4221 1.281419 TAGGGCTCATTCGGTTTGGA 58.719 50.000 0.00 0.00 0.00 3.53
3969 4222 2.017049 CTTAGGGCTCATTCGGTTTGG 58.983 52.381 0.00 0.00 0.00 3.28
3970 4223 1.401905 GCTTAGGGCTCATTCGGTTTG 59.598 52.381 0.00 0.00 38.06 2.93
3971 4224 1.751437 GCTTAGGGCTCATTCGGTTT 58.249 50.000 0.00 0.00 38.06 3.27
3972 4225 3.478540 GCTTAGGGCTCATTCGGTT 57.521 52.632 0.00 0.00 38.06 4.44
3982 4235 0.523519 GCAACACTCAAGCTTAGGGC 59.476 55.000 0.00 0.00 42.19 5.19
3983 4236 1.896220 TGCAACACTCAAGCTTAGGG 58.104 50.000 0.00 0.96 0.00 3.53
3984 4237 4.256920 AGTATGCAACACTCAAGCTTAGG 58.743 43.478 0.00 0.00 0.00 2.69
3985 4238 4.331168 GGAGTATGCAACACTCAAGCTTAG 59.669 45.833 24.93 0.00 43.50 2.18
3986 4239 4.253685 GGAGTATGCAACACTCAAGCTTA 58.746 43.478 24.93 0.00 43.50 3.09
3987 4240 3.077359 GGAGTATGCAACACTCAAGCTT 58.923 45.455 24.93 0.00 43.50 3.74
3988 4241 2.038952 TGGAGTATGCAACACTCAAGCT 59.961 45.455 24.93 0.00 43.50 3.74
3989 4242 2.426522 TGGAGTATGCAACACTCAAGC 58.573 47.619 24.93 13.50 43.50 4.01
3990 4243 5.643348 TGTAATGGAGTATGCAACACTCAAG 59.357 40.000 24.93 0.00 42.43 3.02
3991 4244 5.411361 GTGTAATGGAGTATGCAACACTCAA 59.589 40.000 24.93 18.38 42.43 3.02
3992 4245 4.935205 GTGTAATGGAGTATGCAACACTCA 59.065 41.667 24.93 15.47 42.43 3.41
3993 4246 4.935205 TGTGTAATGGAGTATGCAACACTC 59.065 41.667 18.83 18.83 42.43 3.51
3994 4247 4.905429 TGTGTAATGGAGTATGCAACACT 58.095 39.130 12.28 8.69 42.43 3.55
3995 4248 5.411361 TCTTGTGTAATGGAGTATGCAACAC 59.589 40.000 5.73 5.73 42.43 3.32
3996 4249 5.555966 TCTTGTGTAATGGAGTATGCAACA 58.444 37.500 0.00 0.00 42.43 3.33
3997 4250 6.540189 AGATCTTGTGTAATGGAGTATGCAAC 59.460 38.462 0.00 0.00 42.43 4.17
3998 4251 6.653020 AGATCTTGTGTAATGGAGTATGCAA 58.347 36.000 0.00 0.00 42.43 4.08
3999 4252 6.239217 AGATCTTGTGTAATGGAGTATGCA 57.761 37.500 0.00 0.00 44.23 3.96
4000 4253 7.559590 AAAGATCTTGTGTAATGGAGTATGC 57.440 36.000 9.17 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.