Multiple sequence alignment - TraesCS7A01G261500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G261500 chr7A 100.000 2834 0 0 1 2834 255897376 255894543 0.000000e+00 5234.0
1 TraesCS7A01G261500 chr6A 97.466 1618 36 4 312 1928 35990493 35988880 0.000000e+00 2756.0
2 TraesCS7A01G261500 chr6A 97.403 1617 39 2 312 1928 36055886 36054273 0.000000e+00 2750.0
3 TraesCS7A01G261500 chr6A 100.000 236 0 0 1 236 359125761 359125996 1.210000e-118 436.0
4 TraesCS7A01G261500 chr6A 78.125 128 23 4 1987 2111 560031746 560031621 3.030000e-10 76.8
5 TraesCS7A01G261500 chrUn 96.109 1619 56 4 312 1928 100490342 100491955 0.000000e+00 2634.0
6 TraesCS7A01G261500 chrUn 93.977 1627 83 8 312 1928 100637748 100639369 0.000000e+00 2447.0
7 TraesCS7A01G261500 chrUn 95.923 1251 47 2 312 1560 323636731 323637979 0.000000e+00 2025.0
8 TraesCS7A01G261500 chrUn 94.350 1115 38 10 838 1928 100620877 100621990 0.000000e+00 1687.0
9 TraesCS7A01G261500 chr6B 94.937 1580 73 3 312 1891 66945011 66943439 0.000000e+00 2468.0
10 TraesCS7A01G261500 chr6B 94.817 1582 75 4 312 1891 66920415 66918839 0.000000e+00 2460.0
11 TraesCS7A01G261500 chr6B 94.497 1581 74 5 312 1891 66862544 66860976 0.000000e+00 2425.0
12 TraesCS7A01G261500 chr6B 88.039 1622 175 13 311 1926 66786335 66784727 0.000000e+00 1903.0
13 TraesCS7A01G261500 chr5A 97.507 682 16 1 1957 2637 455460410 455459729 0.000000e+00 1164.0
14 TraesCS7A01G261500 chr5A 96.667 120 3 1 2611 2729 455459716 455459597 6.190000e-47 198.0
15 TraesCS7A01G261500 chr5A 87.273 55 7 0 2047 2101 312273780 312273726 2.360000e-06 63.9
16 TraesCS7A01G261500 chr3D 97.021 235 7 0 2 236 71733418 71733184 2.050000e-106 396.0
17 TraesCS7A01G261500 chr5D 96.624 237 7 1 1 236 283367554 283367318 2.650000e-105 392.0
18 TraesCS7A01G261500 chr5D 89.130 46 5 0 2047 2092 514931866 514931911 1.100000e-04 58.4
19 TraesCS7A01G261500 chr2D 96.610 236 8 0 1 236 199851881 199852116 2.650000e-105 392.0
20 TraesCS7A01G261500 chr7D 96.186 236 9 0 1 236 505308028 505307793 1.230000e-103 387.0
21 TraesCS7A01G261500 chr7D 95.763 236 10 0 1 236 93000870 93001105 5.730000e-102 381.0
22 TraesCS7A01G261500 chr7D 95.763 236 9 1 1 236 230726176 230726410 2.060000e-101 379.0
23 TraesCS7A01G261500 chr6D 96.186 236 9 0 1 236 380612810 380612575 1.230000e-103 387.0
24 TraesCS7A01G261500 chr1D 95.763 236 10 0 1 236 256397706 256397941 5.730000e-102 381.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G261500 chr7A 255894543 255897376 2833 True 5234 5234 100.000 1 2834 1 chr7A.!!$R1 2833
1 TraesCS7A01G261500 chr6A 35988880 35990493 1613 True 2756 2756 97.466 312 1928 1 chr6A.!!$R1 1616
2 TraesCS7A01G261500 chr6A 36054273 36055886 1613 True 2750 2750 97.403 312 1928 1 chr6A.!!$R2 1616
3 TraesCS7A01G261500 chrUn 100490342 100491955 1613 False 2634 2634 96.109 312 1928 1 chrUn.!!$F1 1616
4 TraesCS7A01G261500 chrUn 100637748 100639369 1621 False 2447 2447 93.977 312 1928 1 chrUn.!!$F3 1616
5 TraesCS7A01G261500 chrUn 323636731 323637979 1248 False 2025 2025 95.923 312 1560 1 chrUn.!!$F4 1248
6 TraesCS7A01G261500 chrUn 100620877 100621990 1113 False 1687 1687 94.350 838 1928 1 chrUn.!!$F2 1090
7 TraesCS7A01G261500 chr6B 66943439 66945011 1572 True 2468 2468 94.937 312 1891 1 chr6B.!!$R4 1579
8 TraesCS7A01G261500 chr6B 66918839 66920415 1576 True 2460 2460 94.817 312 1891 1 chr6B.!!$R3 1579
9 TraesCS7A01G261500 chr6B 66860976 66862544 1568 True 2425 2425 94.497 312 1891 1 chr6B.!!$R2 1579
10 TraesCS7A01G261500 chr6B 66784727 66786335 1608 True 1903 1903 88.039 311 1926 1 chr6B.!!$R1 1615
11 TraesCS7A01G261500 chr5A 455459597 455460410 813 True 681 1164 97.087 1957 2729 2 chr5A.!!$R2 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.038251 CCTTTGCCTTTTCTTCGCCC 60.038 55.0 0.0 0.0 0.00 6.13 F
113 114 0.102663 TCTTGTGCGTCCGTGTGTTA 59.897 50.0 0.0 0.0 0.00 2.41 F
831 836 0.103937 AGCATAGAAGCACCTCTCGC 59.896 55.0 0.0 0.0 36.85 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1025 1031 4.099881 TGTGCTTGCTTGAGAATTCCTTTT 59.900 37.500 0.65 0.0 0.00 2.27 R
1313 1345 4.796110 ATATGCAGGTGGGTTAATGTCT 57.204 40.909 0.00 0.0 0.00 3.41 R
2773 2859 0.106419 TTGTGGTTGAACTCACCCCC 60.106 55.000 12.25 0.0 33.29 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.854227 CGCCTCTCGTTTTCCTATCC 58.146 55.000 0.00 0.00 0.00 2.59
20 21 1.538419 CGCCTCTCGTTTTCCTATCCC 60.538 57.143 0.00 0.00 0.00 3.85
21 22 1.202663 GCCTCTCGTTTTCCTATCCCC 60.203 57.143 0.00 0.00 0.00 4.81
22 23 1.416772 CCTCTCGTTTTCCTATCCCCC 59.583 57.143 0.00 0.00 0.00 5.40
23 24 2.116238 CTCTCGTTTTCCTATCCCCCA 58.884 52.381 0.00 0.00 0.00 4.96
24 25 1.835531 TCTCGTTTTCCTATCCCCCAC 59.164 52.381 0.00 0.00 0.00 4.61
25 26 1.838077 CTCGTTTTCCTATCCCCCACT 59.162 52.381 0.00 0.00 0.00 4.00
26 27 2.238898 CTCGTTTTCCTATCCCCCACTT 59.761 50.000 0.00 0.00 0.00 3.16
27 28 2.237893 TCGTTTTCCTATCCCCCACTTC 59.762 50.000 0.00 0.00 0.00 3.01
28 29 2.238898 CGTTTTCCTATCCCCCACTTCT 59.761 50.000 0.00 0.00 0.00 2.85
29 30 3.453353 CGTTTTCCTATCCCCCACTTCTA 59.547 47.826 0.00 0.00 0.00 2.10
30 31 4.080751 CGTTTTCCTATCCCCCACTTCTAA 60.081 45.833 0.00 0.00 0.00 2.10
31 32 5.572066 CGTTTTCCTATCCCCCACTTCTAAA 60.572 44.000 0.00 0.00 0.00 1.85
32 33 6.250711 GTTTTCCTATCCCCCACTTCTAAAA 58.749 40.000 0.00 0.00 0.00 1.52
33 34 5.446260 TTCCTATCCCCCACTTCTAAAAC 57.554 43.478 0.00 0.00 0.00 2.43
34 35 3.453353 TCCTATCCCCCACTTCTAAAACG 59.547 47.826 0.00 0.00 0.00 3.60
35 36 3.453353 CCTATCCCCCACTTCTAAAACGA 59.547 47.826 0.00 0.00 0.00 3.85
36 37 4.102681 CCTATCCCCCACTTCTAAAACGAT 59.897 45.833 0.00 0.00 0.00 3.73
37 38 4.586306 ATCCCCCACTTCTAAAACGATT 57.414 40.909 0.00 0.00 0.00 3.34
38 39 4.376225 TCCCCCACTTCTAAAACGATTT 57.624 40.909 0.00 0.00 0.00 2.17
39 40 4.732065 TCCCCCACTTCTAAAACGATTTT 58.268 39.130 0.00 0.00 36.67 1.82
40 41 4.763279 TCCCCCACTTCTAAAACGATTTTC 59.237 41.667 0.00 0.00 34.19 2.29
41 42 4.379082 CCCCCACTTCTAAAACGATTTTCG 60.379 45.833 0.00 0.00 46.93 3.46
42 43 4.453136 CCCCACTTCTAAAACGATTTTCGA 59.547 41.667 3.62 0.00 43.74 3.71
43 44 5.049267 CCCCACTTCTAAAACGATTTTCGAA 60.049 40.000 3.62 0.00 43.74 3.71
44 45 6.432107 CCCACTTCTAAAACGATTTTCGAAA 58.568 36.000 6.47 6.47 43.74 3.46
45 46 6.913673 CCCACTTCTAAAACGATTTTCGAAAA 59.086 34.615 24.43 24.43 43.74 2.29
46 47 7.096763 CCCACTTCTAAAACGATTTTCGAAAAC 60.097 37.037 24.68 16.69 43.74 2.43
47 48 7.096763 CCACTTCTAAAACGATTTTCGAAAACC 60.097 37.037 24.68 15.30 43.74 3.27
48 49 7.642586 CACTTCTAAAACGATTTTCGAAAACCT 59.357 33.333 24.68 10.88 43.74 3.50
49 50 8.186163 ACTTCTAAAACGATTTTCGAAAACCTT 58.814 29.630 24.68 6.83 43.74 3.50
50 51 8.914328 TTCTAAAACGATTTTCGAAAACCTTT 57.086 26.923 24.68 20.27 43.74 3.11
51 52 8.330302 TCTAAAACGATTTTCGAAAACCTTTG 57.670 30.769 24.68 15.28 43.74 2.77
52 53 5.383984 AAACGATTTTCGAAAACCTTTGC 57.616 34.783 24.68 9.64 43.74 3.68
53 54 3.377439 ACGATTTTCGAAAACCTTTGCC 58.623 40.909 24.68 7.92 43.74 4.52
54 55 3.067601 ACGATTTTCGAAAACCTTTGCCT 59.932 39.130 24.68 7.13 43.74 4.75
55 56 4.048504 CGATTTTCGAAAACCTTTGCCTT 58.951 39.130 24.68 6.39 43.74 4.35
56 57 4.506288 CGATTTTCGAAAACCTTTGCCTTT 59.494 37.500 24.68 5.65 43.74 3.11
57 58 5.006261 CGATTTTCGAAAACCTTTGCCTTTT 59.994 36.000 24.68 5.13 43.74 2.27
58 59 5.788055 TTTTCGAAAACCTTTGCCTTTTC 57.212 34.783 19.08 0.00 34.39 2.29
59 60 4.729227 TTCGAAAACCTTTGCCTTTTCT 57.271 36.364 0.00 0.00 35.21 2.52
60 61 4.729227 TCGAAAACCTTTGCCTTTTCTT 57.271 36.364 0.00 0.00 35.21 2.52
61 62 4.678622 TCGAAAACCTTTGCCTTTTCTTC 58.321 39.130 0.00 0.00 35.21 2.87
62 63 3.485743 CGAAAACCTTTGCCTTTTCTTCG 59.514 43.478 0.00 0.00 35.21 3.79
63 64 2.509052 AACCTTTGCCTTTTCTTCGC 57.491 45.000 0.00 0.00 0.00 4.70
64 65 0.673985 ACCTTTGCCTTTTCTTCGCC 59.326 50.000 0.00 0.00 0.00 5.54
65 66 0.038251 CCTTTGCCTTTTCTTCGCCC 60.038 55.000 0.00 0.00 0.00 6.13
66 67 0.038251 CTTTGCCTTTTCTTCGCCCC 60.038 55.000 0.00 0.00 0.00 5.80
67 68 0.469144 TTTGCCTTTTCTTCGCCCCT 60.469 50.000 0.00 0.00 0.00 4.79
68 69 0.893727 TTGCCTTTTCTTCGCCCCTC 60.894 55.000 0.00 0.00 0.00 4.30
69 70 1.002011 GCCTTTTCTTCGCCCCTCT 60.002 57.895 0.00 0.00 0.00 3.69
70 71 0.609406 GCCTTTTCTTCGCCCCTCTT 60.609 55.000 0.00 0.00 0.00 2.85
71 72 1.454201 CCTTTTCTTCGCCCCTCTTC 58.546 55.000 0.00 0.00 0.00 2.87
72 73 1.454201 CTTTTCTTCGCCCCTCTTCC 58.546 55.000 0.00 0.00 0.00 3.46
73 74 0.321298 TTTTCTTCGCCCCTCTTCCG 60.321 55.000 0.00 0.00 0.00 4.30
74 75 1.477685 TTTCTTCGCCCCTCTTCCGT 61.478 55.000 0.00 0.00 0.00 4.69
75 76 1.477685 TTCTTCGCCCCTCTTCCGTT 61.478 55.000 0.00 0.00 0.00 4.44
76 77 1.448013 CTTCGCCCCTCTTCCGTTC 60.448 63.158 0.00 0.00 0.00 3.95
77 78 1.889530 CTTCGCCCCTCTTCCGTTCT 61.890 60.000 0.00 0.00 0.00 3.01
78 79 1.477685 TTCGCCCCTCTTCCGTTCTT 61.478 55.000 0.00 0.00 0.00 2.52
79 80 1.448013 CGCCCCTCTTCCGTTCTTC 60.448 63.158 0.00 0.00 0.00 2.87
80 81 1.889530 CGCCCCTCTTCCGTTCTTCT 61.890 60.000 0.00 0.00 0.00 2.85
81 82 0.108089 GCCCCTCTTCCGTTCTTCTC 60.108 60.000 0.00 0.00 0.00 2.87
82 83 1.562783 CCCCTCTTCCGTTCTTCTCT 58.437 55.000 0.00 0.00 0.00 3.10
83 84 1.903183 CCCCTCTTCCGTTCTTCTCTT 59.097 52.381 0.00 0.00 0.00 2.85
84 85 2.303311 CCCCTCTTCCGTTCTTCTCTTT 59.697 50.000 0.00 0.00 0.00 2.52
85 86 3.244596 CCCCTCTTCCGTTCTTCTCTTTT 60.245 47.826 0.00 0.00 0.00 2.27
86 87 3.997681 CCCTCTTCCGTTCTTCTCTTTTC 59.002 47.826 0.00 0.00 0.00 2.29
87 88 3.675698 CCTCTTCCGTTCTTCTCTTTTCG 59.324 47.826 0.00 0.00 0.00 3.46
88 89 3.057734 TCTTCCGTTCTTCTCTTTTCGC 58.942 45.455 0.00 0.00 0.00 4.70
89 90 2.814280 TCCGTTCTTCTCTTTTCGCT 57.186 45.000 0.00 0.00 0.00 4.93
90 91 3.107642 TCCGTTCTTCTCTTTTCGCTT 57.892 42.857 0.00 0.00 0.00 4.68
91 92 2.800544 TCCGTTCTTCTCTTTTCGCTTG 59.199 45.455 0.00 0.00 0.00 4.01
92 93 2.565005 CGTTCTTCTCTTTTCGCTTGC 58.435 47.619 0.00 0.00 0.00 4.01
93 94 2.221981 CGTTCTTCTCTTTTCGCTTGCT 59.778 45.455 0.00 0.00 0.00 3.91
94 95 3.303395 CGTTCTTCTCTTTTCGCTTGCTT 60.303 43.478 0.00 0.00 0.00 3.91
95 96 4.215201 GTTCTTCTCTTTTCGCTTGCTTC 58.785 43.478 0.00 0.00 0.00 3.86
96 97 3.733337 TCTTCTCTTTTCGCTTGCTTCT 58.267 40.909 0.00 0.00 0.00 2.85
97 98 4.130118 TCTTCTCTTTTCGCTTGCTTCTT 58.870 39.130 0.00 0.00 0.00 2.52
98 99 3.885484 TCTCTTTTCGCTTGCTTCTTG 57.115 42.857 0.00 0.00 0.00 3.02
99 100 3.206150 TCTCTTTTCGCTTGCTTCTTGT 58.794 40.909 0.00 0.00 0.00 3.16
100 101 3.002656 TCTCTTTTCGCTTGCTTCTTGTG 59.997 43.478 0.00 0.00 0.00 3.33
101 102 1.783140 CTTTTCGCTTGCTTCTTGTGC 59.217 47.619 0.00 0.00 0.00 4.57
102 103 0.316937 TTTCGCTTGCTTCTTGTGCG 60.317 50.000 0.00 0.00 46.71 5.34
103 104 1.436195 TTCGCTTGCTTCTTGTGCGT 61.436 50.000 0.00 0.00 45.69 5.24
104 105 1.439365 CGCTTGCTTCTTGTGCGTC 60.439 57.895 0.00 0.00 41.45 5.19
105 106 1.081840 GCTTGCTTCTTGTGCGTCC 60.082 57.895 0.00 0.00 0.00 4.79
106 107 1.205064 CTTGCTTCTTGTGCGTCCG 59.795 57.895 0.00 0.00 0.00 4.79
107 108 1.498865 CTTGCTTCTTGTGCGTCCGT 61.499 55.000 0.00 0.00 0.00 4.69
108 109 1.771073 TTGCTTCTTGTGCGTCCGTG 61.771 55.000 0.00 0.00 0.00 4.94
109 110 2.244651 GCTTCTTGTGCGTCCGTGT 61.245 57.895 0.00 0.00 0.00 4.49
110 111 1.564622 CTTCTTGTGCGTCCGTGTG 59.435 57.895 0.00 0.00 0.00 3.82
111 112 1.151777 CTTCTTGTGCGTCCGTGTGT 61.152 55.000 0.00 0.00 0.00 3.72
112 113 0.741574 TTCTTGTGCGTCCGTGTGTT 60.742 50.000 0.00 0.00 0.00 3.32
113 114 0.102663 TCTTGTGCGTCCGTGTGTTA 59.897 50.000 0.00 0.00 0.00 2.41
114 115 0.506932 CTTGTGCGTCCGTGTGTTAG 59.493 55.000 0.00 0.00 0.00 2.34
115 116 0.179105 TTGTGCGTCCGTGTGTTAGT 60.179 50.000 0.00 0.00 0.00 2.24
116 117 0.179105 TGTGCGTCCGTGTGTTAGTT 60.179 50.000 0.00 0.00 0.00 2.24
117 118 0.505655 GTGCGTCCGTGTGTTAGTTC 59.494 55.000 0.00 0.00 0.00 3.01
118 119 0.935831 TGCGTCCGTGTGTTAGTTCG 60.936 55.000 0.00 0.00 0.00 3.95
119 120 0.936297 GCGTCCGTGTGTTAGTTCGT 60.936 55.000 0.00 0.00 0.00 3.85
120 121 1.480205 CGTCCGTGTGTTAGTTCGTT 58.520 50.000 0.00 0.00 0.00 3.85
121 122 1.854126 CGTCCGTGTGTTAGTTCGTTT 59.146 47.619 0.00 0.00 0.00 3.60
122 123 2.346924 CGTCCGTGTGTTAGTTCGTTTG 60.347 50.000 0.00 0.00 0.00 2.93
123 124 2.604462 GTCCGTGTGTTAGTTCGTTTGT 59.396 45.455 0.00 0.00 0.00 2.83
124 125 3.062504 GTCCGTGTGTTAGTTCGTTTGTT 59.937 43.478 0.00 0.00 0.00 2.83
125 126 3.683822 TCCGTGTGTTAGTTCGTTTGTTT 59.316 39.130 0.00 0.00 0.00 2.83
126 127 4.153835 TCCGTGTGTTAGTTCGTTTGTTTT 59.846 37.500 0.00 0.00 0.00 2.43
127 128 4.261118 CCGTGTGTTAGTTCGTTTGTTTTG 59.739 41.667 0.00 0.00 0.00 2.44
128 129 4.258704 CGTGTGTTAGTTCGTTTGTTTTGC 60.259 41.667 0.00 0.00 0.00 3.68
129 130 4.030865 GTGTGTTAGTTCGTTTGTTTTGCC 59.969 41.667 0.00 0.00 0.00 4.52
130 131 4.082679 TGTGTTAGTTCGTTTGTTTTGCCT 60.083 37.500 0.00 0.00 0.00 4.75
131 132 4.860352 GTGTTAGTTCGTTTGTTTTGCCTT 59.140 37.500 0.00 0.00 0.00 4.35
132 133 5.004061 GTGTTAGTTCGTTTGTTTTGCCTTC 59.996 40.000 0.00 0.00 0.00 3.46
133 134 3.859411 AGTTCGTTTGTTTTGCCTTCA 57.141 38.095 0.00 0.00 0.00 3.02
134 135 4.385358 AGTTCGTTTGTTTTGCCTTCAT 57.615 36.364 0.00 0.00 0.00 2.57
135 136 4.111916 AGTTCGTTTGTTTTGCCTTCATG 58.888 39.130 0.00 0.00 0.00 3.07
136 137 3.090952 TCGTTTGTTTTGCCTTCATGG 57.909 42.857 0.00 0.00 39.35 3.66
147 148 1.799933 CCTTCATGGCTAGTCCTCCT 58.200 55.000 0.00 0.00 35.26 3.69
148 149 2.964209 CCTTCATGGCTAGTCCTCCTA 58.036 52.381 0.00 0.00 35.26 2.94
149 150 3.515562 CCTTCATGGCTAGTCCTCCTAT 58.484 50.000 0.00 0.00 35.26 2.57
150 151 3.513515 CCTTCATGGCTAGTCCTCCTATC 59.486 52.174 0.00 0.00 35.26 2.08
151 152 3.903530 TCATGGCTAGTCCTCCTATCA 57.096 47.619 0.00 0.00 35.26 2.15
152 153 4.410481 TCATGGCTAGTCCTCCTATCAT 57.590 45.455 0.00 0.00 35.26 2.45
153 154 4.756564 TCATGGCTAGTCCTCCTATCATT 58.243 43.478 0.00 0.00 35.26 2.57
154 155 4.529769 TCATGGCTAGTCCTCCTATCATTG 59.470 45.833 0.00 0.00 35.26 2.82
155 156 3.928754 TGGCTAGTCCTCCTATCATTGT 58.071 45.455 0.00 0.00 35.26 2.71
156 157 4.298626 TGGCTAGTCCTCCTATCATTGTT 58.701 43.478 0.00 0.00 35.26 2.83
157 158 5.464069 TGGCTAGTCCTCCTATCATTGTTA 58.536 41.667 0.00 0.00 35.26 2.41
158 159 5.903010 TGGCTAGTCCTCCTATCATTGTTAA 59.097 40.000 0.00 0.00 35.26 2.01
159 160 6.558775 TGGCTAGTCCTCCTATCATTGTTAAT 59.441 38.462 0.00 0.00 35.26 1.40
160 161 7.733047 TGGCTAGTCCTCCTATCATTGTTAATA 59.267 37.037 0.00 0.00 35.26 0.98
161 162 8.035984 GGCTAGTCCTCCTATCATTGTTAATAC 58.964 40.741 0.00 0.00 0.00 1.89
162 163 8.808092 GCTAGTCCTCCTATCATTGTTAATACT 58.192 37.037 0.00 0.00 0.00 2.12
164 165 8.196378 AGTCCTCCTATCATTGTTAATACTCC 57.804 38.462 0.00 0.00 0.00 3.85
165 166 7.235812 AGTCCTCCTATCATTGTTAATACTCCC 59.764 40.741 0.00 0.00 0.00 4.30
166 167 6.210784 TCCTCCTATCATTGTTAATACTCCCG 59.789 42.308 0.00 0.00 0.00 5.14
167 168 6.210784 CCTCCTATCATTGTTAATACTCCCGA 59.789 42.308 0.00 0.00 0.00 5.14
168 169 7.093289 CCTCCTATCATTGTTAATACTCCCGAT 60.093 40.741 0.00 0.00 0.00 4.18
169 170 8.888836 TCCTATCATTGTTAATACTCCCGATA 57.111 34.615 0.00 0.00 0.00 2.92
170 171 9.316594 TCCTATCATTGTTAATACTCCCGATAA 57.683 33.333 0.00 0.00 0.00 1.75
175 176 9.489084 TCATTGTTAATACTCCCGATAATGAAG 57.511 33.333 0.00 0.00 31.42 3.02
176 177 9.273016 CATTGTTAATACTCCCGATAATGAAGT 57.727 33.333 0.00 0.00 0.00 3.01
177 178 9.847224 ATTGTTAATACTCCCGATAATGAAGTT 57.153 29.630 0.00 0.00 0.00 2.66
178 179 8.882415 TGTTAATACTCCCGATAATGAAGTTC 57.118 34.615 0.00 0.00 0.00 3.01
179 180 8.701895 TGTTAATACTCCCGATAATGAAGTTCT 58.298 33.333 4.17 0.00 0.00 3.01
180 181 9.194271 GTTAATACTCCCGATAATGAAGTTCTC 57.806 37.037 4.17 0.00 0.00 2.87
181 182 6.978674 ATACTCCCGATAATGAAGTTCTCA 57.021 37.500 4.17 0.00 38.81 3.27
182 183 5.677319 ACTCCCGATAATGAAGTTCTCAA 57.323 39.130 4.17 0.00 37.67 3.02
183 184 6.240549 ACTCCCGATAATGAAGTTCTCAAT 57.759 37.500 4.17 0.00 37.67 2.57
184 185 6.653989 ACTCCCGATAATGAAGTTCTCAATT 58.346 36.000 4.17 0.00 37.67 2.32
185 186 7.112779 ACTCCCGATAATGAAGTTCTCAATTT 58.887 34.615 4.17 0.00 37.67 1.82
186 187 7.611855 ACTCCCGATAATGAAGTTCTCAATTTT 59.388 33.333 4.17 0.00 37.67 1.82
187 188 9.109393 CTCCCGATAATGAAGTTCTCAATTTTA 57.891 33.333 4.17 0.00 37.67 1.52
188 189 9.456147 TCCCGATAATGAAGTTCTCAATTTTAA 57.544 29.630 4.17 0.00 37.67 1.52
196 197 8.940768 TGAAGTTCTCAATTTTAAACAAAGGG 57.059 30.769 4.17 0.00 0.00 3.95
197 198 8.754080 TGAAGTTCTCAATTTTAAACAAAGGGA 58.246 29.630 4.17 0.00 0.00 4.20
198 199 9.249457 GAAGTTCTCAATTTTAAACAAAGGGAG 57.751 33.333 0.00 0.00 0.00 4.30
199 200 7.726216 AGTTCTCAATTTTAAACAAAGGGAGG 58.274 34.615 0.00 0.00 0.00 4.30
200 201 6.664428 TCTCAATTTTAAACAAAGGGAGGG 57.336 37.500 0.00 0.00 0.00 4.30
201 202 6.377912 TCTCAATTTTAAACAAAGGGAGGGA 58.622 36.000 0.00 0.00 0.00 4.20
202 203 7.016296 TCTCAATTTTAAACAAAGGGAGGGAT 58.984 34.615 0.00 0.00 0.00 3.85
203 204 8.174085 TCTCAATTTTAAACAAAGGGAGGGATA 58.826 33.333 0.00 0.00 0.00 2.59
204 205 8.728596 TCAATTTTAAACAAAGGGAGGGATAA 57.271 30.769 0.00 0.00 0.00 1.75
205 206 9.160412 TCAATTTTAAACAAAGGGAGGGATAAA 57.840 29.630 0.00 0.00 0.00 1.40
206 207 9.785982 CAATTTTAAACAAAGGGAGGGATAAAA 57.214 29.630 0.00 0.00 0.00 1.52
209 210 8.966155 TTTAAACAAAGGGAGGGATAAAATCT 57.034 30.769 0.00 0.00 0.00 2.40
212 213 8.966155 AAACAAAGGGAGGGATAAAATCTAAA 57.034 30.769 0.00 0.00 0.00 1.85
213 214 8.966155 AACAAAGGGAGGGATAAAATCTAAAA 57.034 30.769 0.00 0.00 0.00 1.52
214 215 8.595362 ACAAAGGGAGGGATAAAATCTAAAAG 57.405 34.615 0.00 0.00 0.00 2.27
215 216 8.398743 ACAAAGGGAGGGATAAAATCTAAAAGA 58.601 33.333 0.00 0.00 0.00 2.52
216 217 9.426534 CAAAGGGAGGGATAAAATCTAAAAGAT 57.573 33.333 0.00 0.00 36.28 2.40
217 218 9.426534 AAAGGGAGGGATAAAATCTAAAAGATG 57.573 33.333 0.00 0.00 34.65 2.90
218 219 7.007116 AGGGAGGGATAAAATCTAAAAGATGC 58.993 38.462 0.00 0.00 34.65 3.91
219 220 7.007116 GGGAGGGATAAAATCTAAAAGATGCT 58.993 38.462 0.00 0.00 34.65 3.79
220 221 7.507277 GGGAGGGATAAAATCTAAAAGATGCTT 59.493 37.037 0.00 0.00 34.65 3.91
221 222 8.355913 GGAGGGATAAAATCTAAAAGATGCTTG 58.644 37.037 0.00 0.00 34.65 4.01
222 223 8.242729 AGGGATAAAATCTAAAAGATGCTTGG 57.757 34.615 0.00 0.00 34.65 3.61
223 224 7.841222 AGGGATAAAATCTAAAAGATGCTTGGT 59.159 33.333 0.00 0.00 34.65 3.67
224 225 9.131791 GGGATAAAATCTAAAAGATGCTTGGTA 57.868 33.333 0.00 0.00 34.65 3.25
234 235 9.455847 CTAAAAGATGCTTGGTATAGAATTTGC 57.544 33.333 0.00 0.00 0.00 3.68
235 236 7.408756 AAAGATGCTTGGTATAGAATTTGCA 57.591 32.000 0.00 0.00 0.00 4.08
236 237 6.382869 AGATGCTTGGTATAGAATTTGCAC 57.617 37.500 0.00 0.00 31.92 4.57
237 238 5.887598 AGATGCTTGGTATAGAATTTGCACA 59.112 36.000 0.00 0.00 31.92 4.57
238 239 6.548622 AGATGCTTGGTATAGAATTTGCACAT 59.451 34.615 0.00 0.00 31.92 3.21
239 240 7.720957 AGATGCTTGGTATAGAATTTGCACATA 59.279 33.333 0.00 0.00 31.92 2.29
240 241 7.637631 TGCTTGGTATAGAATTTGCACATAA 57.362 32.000 0.00 0.00 0.00 1.90
241 242 8.236585 TGCTTGGTATAGAATTTGCACATAAT 57.763 30.769 0.00 0.00 0.00 1.28
242 243 9.348476 TGCTTGGTATAGAATTTGCACATAATA 57.652 29.630 0.00 0.00 0.00 0.98
243 244 9.612620 GCTTGGTATAGAATTTGCACATAATAC 57.387 33.333 0.00 0.00 0.00 1.89
250 251 9.745018 ATAGAATTTGCACATAATACTATGCCT 57.255 29.630 0.00 0.00 38.87 4.75
251 252 7.879070 AGAATTTGCACATAATACTATGCCTG 58.121 34.615 0.00 0.00 38.87 4.85
252 253 7.720957 AGAATTTGCACATAATACTATGCCTGA 59.279 33.333 0.00 0.00 38.87 3.86
253 254 7.822161 ATTTGCACATAATACTATGCCTGAA 57.178 32.000 0.00 0.00 38.87 3.02
254 255 7.822161 TTTGCACATAATACTATGCCTGAAT 57.178 32.000 0.00 0.00 38.87 2.57
255 256 7.439157 TTGCACATAATACTATGCCTGAATC 57.561 36.000 0.00 0.00 38.87 2.52
256 257 6.772605 TGCACATAATACTATGCCTGAATCT 58.227 36.000 0.00 0.00 38.87 2.40
257 258 7.906327 TGCACATAATACTATGCCTGAATCTA 58.094 34.615 0.00 0.00 38.87 1.98
258 259 8.037166 TGCACATAATACTATGCCTGAATCTAG 58.963 37.037 0.00 0.00 38.87 2.43
259 260 7.010923 GCACATAATACTATGCCTGAATCTAGC 59.989 40.741 0.00 0.00 38.87 3.42
260 261 8.037166 CACATAATACTATGCCTGAATCTAGCA 58.963 37.037 0.67 0.67 38.87 3.49
265 266 5.486526 ACTATGCCTGAATCTAGCATAAGC 58.513 41.667 15.06 0.00 45.93 3.09
266 267 3.843893 TGCCTGAATCTAGCATAAGCA 57.156 42.857 0.00 0.00 45.49 3.91
267 268 4.155063 TGCCTGAATCTAGCATAAGCAA 57.845 40.909 0.00 0.00 45.49 3.91
268 269 4.132336 TGCCTGAATCTAGCATAAGCAAG 58.868 43.478 0.00 0.00 45.49 4.01
269 270 4.133078 GCCTGAATCTAGCATAAGCAAGT 58.867 43.478 0.00 0.00 45.49 3.16
270 271 4.024218 GCCTGAATCTAGCATAAGCAAGTG 60.024 45.833 0.00 0.00 45.49 3.16
271 272 4.514441 CCTGAATCTAGCATAAGCAAGTGG 59.486 45.833 0.00 0.00 45.49 4.00
272 273 5.102953 TGAATCTAGCATAAGCAAGTGGT 57.897 39.130 0.00 0.00 45.49 4.16
273 274 4.877823 TGAATCTAGCATAAGCAAGTGGTG 59.122 41.667 0.00 0.00 45.49 4.17
274 275 4.760530 ATCTAGCATAAGCAAGTGGTGA 57.239 40.909 0.00 0.00 45.49 4.02
275 276 4.760530 TCTAGCATAAGCAAGTGGTGAT 57.239 40.909 0.00 0.00 45.49 3.06
276 277 5.869649 TCTAGCATAAGCAAGTGGTGATA 57.130 39.130 0.00 0.00 45.49 2.15
277 278 6.425210 TCTAGCATAAGCAAGTGGTGATAT 57.575 37.500 0.00 0.00 45.49 1.63
278 279 6.830912 TCTAGCATAAGCAAGTGGTGATATT 58.169 36.000 0.00 0.00 45.49 1.28
279 280 7.962441 TCTAGCATAAGCAAGTGGTGATATTA 58.038 34.615 0.00 0.00 45.49 0.98
280 281 8.597167 TCTAGCATAAGCAAGTGGTGATATTAT 58.403 33.333 0.00 0.00 45.49 1.28
281 282 7.444629 AGCATAAGCAAGTGGTGATATTATG 57.555 36.000 0.00 0.00 45.49 1.90
282 283 7.226441 AGCATAAGCAAGTGGTGATATTATGA 58.774 34.615 6.29 0.00 45.49 2.15
283 284 7.886970 AGCATAAGCAAGTGGTGATATTATGAT 59.113 33.333 6.29 0.00 45.49 2.45
284 285 7.966753 GCATAAGCAAGTGGTGATATTATGATG 59.033 37.037 6.29 0.00 41.58 3.07
285 286 5.954296 AGCAAGTGGTGATATTATGATGC 57.046 39.130 0.00 0.00 0.00 3.91
286 287 5.379187 AGCAAGTGGTGATATTATGATGCA 58.621 37.500 0.00 0.00 32.76 3.96
287 288 6.008331 AGCAAGTGGTGATATTATGATGCAT 58.992 36.000 0.00 0.00 32.76 3.96
288 289 6.150641 AGCAAGTGGTGATATTATGATGCATC 59.849 38.462 20.14 20.14 32.76 3.91
289 290 6.150641 GCAAGTGGTGATATTATGATGCATCT 59.849 38.462 26.32 14.64 0.00 2.90
290 291 7.309012 GCAAGTGGTGATATTATGATGCATCTT 60.309 37.037 26.32 22.02 0.00 2.40
291 292 7.918536 AGTGGTGATATTATGATGCATCTTC 57.081 36.000 26.32 13.60 0.00 2.87
292 293 6.883217 AGTGGTGATATTATGATGCATCTTCC 59.117 38.462 26.32 15.45 0.00 3.46
293 294 5.876460 TGGTGATATTATGATGCATCTTCCG 59.124 40.000 26.32 0.00 0.00 4.30
294 295 5.877012 GGTGATATTATGATGCATCTTCCGT 59.123 40.000 26.32 12.32 0.00 4.69
295 296 6.183360 GGTGATATTATGATGCATCTTCCGTG 60.183 42.308 26.32 0.00 0.00 4.94
296 297 6.369890 GTGATATTATGATGCATCTTCCGTGT 59.630 38.462 26.32 8.22 0.00 4.49
297 298 6.936335 TGATATTATGATGCATCTTCCGTGTT 59.064 34.615 26.32 5.88 0.00 3.32
298 299 7.445096 TGATATTATGATGCATCTTCCGTGTTT 59.555 33.333 26.32 4.54 0.00 2.83
299 300 8.846943 ATATTATGATGCATCTTCCGTGTTTA 57.153 30.769 26.32 3.41 0.00 2.01
300 301 6.603237 TTATGATGCATCTTCCGTGTTTAG 57.397 37.500 26.32 0.00 0.00 1.85
301 302 3.270027 TGATGCATCTTCCGTGTTTAGG 58.730 45.455 26.32 0.00 0.00 2.69
302 303 3.055458 TGATGCATCTTCCGTGTTTAGGA 60.055 43.478 26.32 0.00 35.69 2.94
303 304 3.627395 TGCATCTTCCGTGTTTAGGAT 57.373 42.857 0.00 0.00 37.65 3.24
304 305 3.950397 TGCATCTTCCGTGTTTAGGATT 58.050 40.909 0.00 0.00 37.65 3.01
305 306 3.689161 TGCATCTTCCGTGTTTAGGATTG 59.311 43.478 0.00 0.00 37.65 2.67
306 307 3.065371 GCATCTTCCGTGTTTAGGATTGG 59.935 47.826 0.00 0.00 37.65 3.16
307 308 4.261801 CATCTTCCGTGTTTAGGATTGGT 58.738 43.478 0.00 0.00 37.65 3.67
308 309 4.360951 TCTTCCGTGTTTAGGATTGGTT 57.639 40.909 0.00 0.00 37.65 3.67
309 310 4.320870 TCTTCCGTGTTTAGGATTGGTTC 58.679 43.478 0.00 0.00 37.65 3.62
445 447 6.151648 CAGGAAAGCCTAATGAATGTTCAAGA 59.848 38.462 0.00 0.00 44.80 3.02
727 731 2.884012 TGAGTGCAATTTGGTCAACGAT 59.116 40.909 0.00 0.00 0.00 3.73
831 836 0.103937 AGCATAGAAGCACCTCTCGC 59.896 55.000 0.00 0.00 36.85 5.03
907 913 3.937814 TGTATGGCAGACGATGTTCTTT 58.062 40.909 7.86 0.00 0.00 2.52
958 964 4.009675 CAACCTTAGGCATAGCAAAGACA 58.990 43.478 0.00 0.00 0.00 3.41
1004 1010 2.781923 CATGTCACACCTCAACATGGA 58.218 47.619 0.00 0.00 44.10 3.41
1025 1031 4.021016 GGAAGAAGCTTCACTCTACAAGGA 60.021 45.833 27.57 0.00 0.00 3.36
1268 1278 6.205464 CAGAGTGAAATGCAAGAGGTTAAGAA 59.795 38.462 0.00 0.00 0.00 2.52
1313 1345 6.150976 CACTCCTTCCATTATTAGTTGTTGCA 59.849 38.462 0.00 0.00 0.00 4.08
1320 1352 8.800370 TCCATTATTAGTTGTTGCAGACATTA 57.200 30.769 3.15 0.00 38.26 1.90
1928 1974 8.475331 AAAAGAGAAAAGCATTGCATATTCAG 57.525 30.769 11.91 0.00 0.00 3.02
1929 1975 6.145338 AGAGAAAAGCATTGCATATTCAGG 57.855 37.500 11.91 0.00 0.00 3.86
1930 1976 5.889853 AGAGAAAAGCATTGCATATTCAGGA 59.110 36.000 11.91 0.00 0.00 3.86
1931 1977 6.379133 AGAGAAAAGCATTGCATATTCAGGAA 59.621 34.615 11.91 0.00 0.00 3.36
1932 1978 6.938507 AGAAAAGCATTGCATATTCAGGAAA 58.061 32.000 11.91 0.00 0.00 3.13
1933 1979 7.039882 AGAAAAGCATTGCATATTCAGGAAAG 58.960 34.615 11.91 0.00 0.00 2.62
1934 1980 5.927281 AAGCATTGCATATTCAGGAAAGT 57.073 34.783 11.91 0.00 0.00 2.66
1935 1981 7.408756 AAAGCATTGCATATTCAGGAAAGTA 57.591 32.000 11.91 0.00 0.00 2.24
1936 1982 6.630444 AGCATTGCATATTCAGGAAAGTAG 57.370 37.500 11.91 0.00 0.00 2.57
1937 1983 6.359804 AGCATTGCATATTCAGGAAAGTAGA 58.640 36.000 11.91 0.00 0.00 2.59
1938 1984 6.830324 AGCATTGCATATTCAGGAAAGTAGAA 59.170 34.615 11.91 0.00 0.00 2.10
1939 1985 7.504911 AGCATTGCATATTCAGGAAAGTAGAAT 59.495 33.333 11.91 0.00 36.14 2.40
1940 1986 8.786898 GCATTGCATATTCAGGAAAGTAGAATA 58.213 33.333 3.15 0.00 38.26 1.75
2016 2062 4.618489 CCGCAAATCAAATGTCAGACTTTC 59.382 41.667 1.31 0.00 0.00 2.62
2059 2105 5.698545 TGCCCAAGTTTGCAAATTATGTTAC 59.301 36.000 16.21 0.00 33.87 2.50
2093 2139 4.527816 ACAATTTCCTTTAGCAAGCATGGA 59.472 37.500 0.00 0.00 0.00 3.41
2177 2223 4.678509 TCCTCACGACAATACAATTTGC 57.321 40.909 0.00 0.00 0.00 3.68
2201 2247 5.737290 CCATGCTTAAAAATCTAACGTTCCG 59.263 40.000 2.82 0.00 0.00 4.30
2205 2251 7.586747 TGCTTAAAAATCTAACGTTCCGAAAT 58.413 30.769 2.82 0.00 0.00 2.17
2219 2265 8.944212 ACGTTCCGAAATAAAAACTATGAAAG 57.056 30.769 0.00 0.00 0.00 2.62
2326 2372 0.610785 ACTTACAAATGGGGCCCACG 60.611 55.000 31.54 21.84 35.80 4.94
2380 2426 9.059023 AGGGTTAAAATCTAGAGAGTTTGGTAT 57.941 33.333 13.67 0.00 41.61 2.73
2515 2561 7.304735 TGCTGTCATGTATTTGTACAACAATC 58.695 34.615 8.07 0.43 38.00 2.67
2751 2837 9.507329 TCTGCTACAAAACTTGAGATAAAATCT 57.493 29.630 0.00 0.00 43.70 2.40
2795 2881 2.341846 GGTGAGTTCAACCACAAGGA 57.658 50.000 10.25 0.00 38.69 3.36
2796 2882 1.947456 GGTGAGTTCAACCACAAGGAC 59.053 52.381 10.25 0.00 38.69 3.85
2797 2883 1.597663 GTGAGTTCAACCACAAGGACG 59.402 52.381 4.74 0.00 38.69 4.79
2798 2884 1.226746 GAGTTCAACCACAAGGACGG 58.773 55.000 0.00 0.00 38.69 4.79
2799 2885 0.834612 AGTTCAACCACAAGGACGGA 59.165 50.000 0.00 0.00 38.69 4.69
2800 2886 1.202651 AGTTCAACCACAAGGACGGAG 60.203 52.381 0.00 0.00 38.69 4.63
2801 2887 0.107831 TTCAACCACAAGGACGGAGG 59.892 55.000 0.00 0.00 38.69 4.30
2802 2888 0.761323 TCAACCACAAGGACGGAGGA 60.761 55.000 0.00 0.00 38.69 3.71
2803 2889 0.324943 CAACCACAAGGACGGAGGAT 59.675 55.000 0.00 0.00 38.69 3.24
2804 2890 0.324943 AACCACAAGGACGGAGGATG 59.675 55.000 0.00 0.00 38.69 3.51
2805 2891 0.544357 ACCACAAGGACGGAGGATGA 60.544 55.000 0.00 0.00 38.69 2.92
2806 2892 0.613260 CCACAAGGACGGAGGATGAA 59.387 55.000 0.00 0.00 36.89 2.57
2807 2893 1.676014 CCACAAGGACGGAGGATGAAC 60.676 57.143 0.00 0.00 36.89 3.18
2808 2894 1.001974 CACAAGGACGGAGGATGAACA 59.998 52.381 0.00 0.00 0.00 3.18
2809 2895 1.909302 ACAAGGACGGAGGATGAACAT 59.091 47.619 0.00 0.00 0.00 2.71
2810 2896 2.283298 CAAGGACGGAGGATGAACATG 58.717 52.381 0.00 0.00 0.00 3.21
2811 2897 0.179000 AGGACGGAGGATGAACATGC 59.821 55.000 0.00 0.00 0.00 4.06
2812 2898 0.815615 GGACGGAGGATGAACATGCC 60.816 60.000 2.88 0.24 0.00 4.40
2813 2899 0.815615 GACGGAGGATGAACATGCCC 60.816 60.000 2.88 3.91 0.00 5.36
2814 2900 1.889105 CGGAGGATGAACATGCCCG 60.889 63.158 16.12 16.12 36.95 6.13
2815 2901 1.224592 GGAGGATGAACATGCCCGT 59.775 57.895 2.88 0.00 0.00 5.28
2816 2902 0.394352 GGAGGATGAACATGCCCGTT 60.394 55.000 2.88 0.00 0.00 4.44
2817 2903 1.017387 GAGGATGAACATGCCCGTTC 58.983 55.000 8.09 8.09 44.56 3.95
2821 2907 4.073052 GAACATGCCCGTTCACCA 57.927 55.556 9.75 0.00 43.89 4.17
2822 2908 2.566824 GAACATGCCCGTTCACCAT 58.433 52.632 9.75 0.00 43.89 3.55
2823 2909 0.887933 GAACATGCCCGTTCACCATT 59.112 50.000 9.75 0.00 43.89 3.16
2824 2910 1.272212 GAACATGCCCGTTCACCATTT 59.728 47.619 9.75 0.00 43.89 2.32
2825 2911 0.602562 ACATGCCCGTTCACCATTTG 59.397 50.000 0.00 0.00 0.00 2.32
2826 2912 0.108709 CATGCCCGTTCACCATTTGG 60.109 55.000 0.00 0.00 42.17 3.28
2827 2913 0.251564 ATGCCCGTTCACCATTTGGA 60.252 50.000 3.01 0.00 38.94 3.53
2828 2914 0.893270 TGCCCGTTCACCATTTGGAG 60.893 55.000 3.01 0.00 38.94 3.86
2829 2915 0.893727 GCCCGTTCACCATTTGGAGT 60.894 55.000 3.01 0.00 38.94 3.85
2830 2916 0.881118 CCCGTTCACCATTTGGAGTG 59.119 55.000 3.01 0.00 38.94 3.51
2831 2917 0.240945 CCGTTCACCATTTGGAGTGC 59.759 55.000 3.01 0.00 38.94 4.40
2832 2918 0.950836 CGTTCACCATTTGGAGTGCA 59.049 50.000 3.01 0.00 38.94 4.57
2833 2919 1.541147 CGTTCACCATTTGGAGTGCAT 59.459 47.619 3.01 0.00 38.94 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.202663 GGGGATAGGAAAACGAGAGGC 60.203 57.143 0.00 0.00 0.00 4.70
2 3 1.416772 GGGGGATAGGAAAACGAGAGG 59.583 57.143 0.00 0.00 0.00 3.69
3 4 2.116238 TGGGGGATAGGAAAACGAGAG 58.884 52.381 0.00 0.00 0.00 3.20
4 5 1.835531 GTGGGGGATAGGAAAACGAGA 59.164 52.381 0.00 0.00 0.00 4.04
5 6 1.838077 AGTGGGGGATAGGAAAACGAG 59.162 52.381 0.00 0.00 0.00 4.18
6 7 1.961133 AGTGGGGGATAGGAAAACGA 58.039 50.000 0.00 0.00 0.00 3.85
7 8 2.238898 AGAAGTGGGGGATAGGAAAACG 59.761 50.000 0.00 0.00 0.00 3.60
8 9 5.446260 TTAGAAGTGGGGGATAGGAAAAC 57.554 43.478 0.00 0.00 0.00 2.43
9 10 6.250711 GTTTTAGAAGTGGGGGATAGGAAAA 58.749 40.000 0.00 0.00 0.00 2.29
10 11 5.572066 CGTTTTAGAAGTGGGGGATAGGAAA 60.572 44.000 0.00 0.00 0.00 3.13
11 12 4.080751 CGTTTTAGAAGTGGGGGATAGGAA 60.081 45.833 0.00 0.00 0.00 3.36
12 13 3.453353 CGTTTTAGAAGTGGGGGATAGGA 59.547 47.826 0.00 0.00 0.00 2.94
13 14 3.453353 TCGTTTTAGAAGTGGGGGATAGG 59.547 47.826 0.00 0.00 0.00 2.57
14 15 4.748277 TCGTTTTAGAAGTGGGGGATAG 57.252 45.455 0.00 0.00 0.00 2.08
15 16 5.703730 AATCGTTTTAGAAGTGGGGGATA 57.296 39.130 0.00 0.00 0.00 2.59
16 17 4.586306 AATCGTTTTAGAAGTGGGGGAT 57.414 40.909 0.00 0.00 0.00 3.85
17 18 4.376225 AAATCGTTTTAGAAGTGGGGGA 57.624 40.909 0.00 0.00 0.00 4.81
18 19 4.379082 CGAAAATCGTTTTAGAAGTGGGGG 60.379 45.833 0.00 0.00 34.72 5.40
19 20 4.453136 TCGAAAATCGTTTTAGAAGTGGGG 59.547 41.667 0.00 0.00 41.35 4.96
20 21 5.600908 TCGAAAATCGTTTTAGAAGTGGG 57.399 39.130 0.00 0.00 41.35 4.61
21 22 7.096763 GGTTTTCGAAAATCGTTTTAGAAGTGG 60.097 37.037 24.93 0.00 42.39 4.00
22 23 7.642586 AGGTTTTCGAAAATCGTTTTAGAAGTG 59.357 33.333 24.93 0.00 42.39 3.16
23 24 7.700505 AGGTTTTCGAAAATCGTTTTAGAAGT 58.299 30.769 24.93 3.14 42.39 3.01
24 25 8.556517 AAGGTTTTCGAAAATCGTTTTAGAAG 57.443 30.769 24.93 0.69 42.39 2.85
25 26 8.800031 CAAAGGTTTTCGAAAATCGTTTTAGAA 58.200 29.630 25.79 11.57 40.73 2.10
26 27 7.043920 GCAAAGGTTTTCGAAAATCGTTTTAGA 60.044 33.333 25.79 0.42 41.35 2.10
27 28 7.054998 GCAAAGGTTTTCGAAAATCGTTTTAG 58.945 34.615 25.79 18.11 41.35 1.85
28 29 6.019720 GGCAAAGGTTTTCGAAAATCGTTTTA 60.020 34.615 25.79 1.81 41.35 1.52
29 30 5.220510 GGCAAAGGTTTTCGAAAATCGTTTT 60.221 36.000 25.79 19.10 41.35 2.43
30 31 4.269123 GGCAAAGGTTTTCGAAAATCGTTT 59.731 37.500 25.79 24.15 41.35 3.60
31 32 3.799963 GGCAAAGGTTTTCGAAAATCGTT 59.200 39.130 23.62 23.62 41.35 3.85
32 33 3.067601 AGGCAAAGGTTTTCGAAAATCGT 59.932 39.130 24.93 20.02 41.35 3.73
33 34 3.638484 AGGCAAAGGTTTTCGAAAATCG 58.362 40.909 24.93 13.51 42.10 3.34
34 35 5.984233 AAAGGCAAAGGTTTTCGAAAATC 57.016 34.783 24.93 24.14 0.00 2.17
35 36 6.112734 AGAAAAGGCAAAGGTTTTCGAAAAT 58.887 32.000 24.93 8.69 44.12 1.82
36 37 5.483811 AGAAAAGGCAAAGGTTTTCGAAAA 58.516 33.333 19.08 19.08 44.12 2.29
37 38 5.079689 AGAAAAGGCAAAGGTTTTCGAAA 57.920 34.783 6.47 6.47 44.12 3.46
38 39 4.729227 AGAAAAGGCAAAGGTTTTCGAA 57.271 36.364 0.00 0.00 44.12 3.71
39 40 4.678622 GAAGAAAAGGCAAAGGTTTTCGA 58.321 39.130 4.03 0.00 44.12 3.71
40 41 3.485743 CGAAGAAAAGGCAAAGGTTTTCG 59.514 43.478 4.03 0.00 44.12 3.46
41 42 3.245284 GCGAAGAAAAGGCAAAGGTTTTC 59.755 43.478 0.00 1.81 41.18 2.29
42 43 3.194861 GCGAAGAAAAGGCAAAGGTTTT 58.805 40.909 0.00 0.00 0.00 2.43
43 44 2.483013 GGCGAAGAAAAGGCAAAGGTTT 60.483 45.455 0.00 0.00 0.00 3.27
44 45 1.068588 GGCGAAGAAAAGGCAAAGGTT 59.931 47.619 0.00 0.00 0.00 3.50
45 46 0.673985 GGCGAAGAAAAGGCAAAGGT 59.326 50.000 0.00 0.00 0.00 3.50
46 47 0.038251 GGGCGAAGAAAAGGCAAAGG 60.038 55.000 0.00 0.00 34.32 3.11
47 48 0.038251 GGGGCGAAGAAAAGGCAAAG 60.038 55.000 0.00 0.00 34.32 2.77
48 49 0.469144 AGGGGCGAAGAAAAGGCAAA 60.469 50.000 0.00 0.00 34.32 3.68
49 50 0.893727 GAGGGGCGAAGAAAAGGCAA 60.894 55.000 0.00 0.00 34.32 4.52
50 51 1.303317 GAGGGGCGAAGAAAAGGCA 60.303 57.895 0.00 0.00 34.32 4.75
51 52 0.609406 AAGAGGGGCGAAGAAAAGGC 60.609 55.000 0.00 0.00 0.00 4.35
52 53 1.454201 GAAGAGGGGCGAAGAAAAGG 58.546 55.000 0.00 0.00 0.00 3.11
53 54 1.454201 GGAAGAGGGGCGAAGAAAAG 58.546 55.000 0.00 0.00 0.00 2.27
54 55 0.321298 CGGAAGAGGGGCGAAGAAAA 60.321 55.000 0.00 0.00 0.00 2.29
55 56 1.295423 CGGAAGAGGGGCGAAGAAA 59.705 57.895 0.00 0.00 0.00 2.52
56 57 1.477685 AACGGAAGAGGGGCGAAGAA 61.478 55.000 0.00 0.00 0.00 2.52
57 58 1.885163 GAACGGAAGAGGGGCGAAGA 61.885 60.000 0.00 0.00 0.00 2.87
58 59 1.448013 GAACGGAAGAGGGGCGAAG 60.448 63.158 0.00 0.00 0.00 3.79
59 60 1.477685 AAGAACGGAAGAGGGGCGAA 61.478 55.000 0.00 0.00 0.00 4.70
60 61 1.885163 GAAGAACGGAAGAGGGGCGA 61.885 60.000 0.00 0.00 0.00 5.54
61 62 1.448013 GAAGAACGGAAGAGGGGCG 60.448 63.158 0.00 0.00 0.00 6.13
62 63 0.108089 GAGAAGAACGGAAGAGGGGC 60.108 60.000 0.00 0.00 0.00 5.80
63 64 1.562783 AGAGAAGAACGGAAGAGGGG 58.437 55.000 0.00 0.00 0.00 4.79
64 65 3.686916 AAAGAGAAGAACGGAAGAGGG 57.313 47.619 0.00 0.00 0.00 4.30
65 66 3.675698 CGAAAAGAGAAGAACGGAAGAGG 59.324 47.826 0.00 0.00 0.00 3.69
66 67 3.122111 GCGAAAAGAGAAGAACGGAAGAG 59.878 47.826 0.00 0.00 0.00 2.85
67 68 3.057734 GCGAAAAGAGAAGAACGGAAGA 58.942 45.455 0.00 0.00 0.00 2.87
68 69 3.060602 AGCGAAAAGAGAAGAACGGAAG 58.939 45.455 0.00 0.00 0.00 3.46
69 70 3.107642 AGCGAAAAGAGAAGAACGGAA 57.892 42.857 0.00 0.00 0.00 4.30
70 71 2.800544 CAAGCGAAAAGAGAAGAACGGA 59.199 45.455 0.00 0.00 0.00 4.69
71 72 2.663063 GCAAGCGAAAAGAGAAGAACGG 60.663 50.000 0.00 0.00 0.00 4.44
72 73 2.221981 AGCAAGCGAAAAGAGAAGAACG 59.778 45.455 0.00 0.00 0.00 3.95
73 74 3.887339 AGCAAGCGAAAAGAGAAGAAC 57.113 42.857 0.00 0.00 0.00 3.01
74 75 4.130118 AGAAGCAAGCGAAAAGAGAAGAA 58.870 39.130 0.00 0.00 0.00 2.52
75 76 3.733337 AGAAGCAAGCGAAAAGAGAAGA 58.267 40.909 0.00 0.00 0.00 2.87
76 77 4.217497 CAAGAAGCAAGCGAAAAGAGAAG 58.783 43.478 0.00 0.00 0.00 2.85
77 78 3.627577 ACAAGAAGCAAGCGAAAAGAGAA 59.372 39.130 0.00 0.00 0.00 2.87
78 79 3.002656 CACAAGAAGCAAGCGAAAAGAGA 59.997 43.478 0.00 0.00 0.00 3.10
79 80 3.294943 CACAAGAAGCAAGCGAAAAGAG 58.705 45.455 0.00 0.00 0.00 2.85
80 81 2.541588 GCACAAGAAGCAAGCGAAAAGA 60.542 45.455 0.00 0.00 0.00 2.52
81 82 1.783140 GCACAAGAAGCAAGCGAAAAG 59.217 47.619 0.00 0.00 0.00 2.27
82 83 1.838913 GCACAAGAAGCAAGCGAAAA 58.161 45.000 0.00 0.00 0.00 2.29
83 84 3.549997 GCACAAGAAGCAAGCGAAA 57.450 47.368 0.00 0.00 0.00 3.46
87 88 1.081840 GGACGCACAAGAAGCAAGC 60.082 57.895 0.00 0.00 0.00 4.01
88 89 1.205064 CGGACGCACAAGAAGCAAG 59.795 57.895 0.00 0.00 0.00 4.01
89 90 1.522806 ACGGACGCACAAGAAGCAA 60.523 52.632 0.00 0.00 0.00 3.91
90 91 2.108157 ACGGACGCACAAGAAGCA 59.892 55.556 0.00 0.00 0.00 3.91
91 92 2.244651 ACACGGACGCACAAGAAGC 61.245 57.895 0.00 0.00 0.00 3.86
92 93 1.151777 ACACACGGACGCACAAGAAG 61.152 55.000 0.00 0.00 0.00 2.85
93 94 0.741574 AACACACGGACGCACAAGAA 60.742 50.000 0.00 0.00 0.00 2.52
94 95 0.102663 TAACACACGGACGCACAAGA 59.897 50.000 0.00 0.00 0.00 3.02
95 96 0.506932 CTAACACACGGACGCACAAG 59.493 55.000 0.00 0.00 0.00 3.16
96 97 0.179105 ACTAACACACGGACGCACAA 60.179 50.000 0.00 0.00 0.00 3.33
97 98 0.179105 AACTAACACACGGACGCACA 60.179 50.000 0.00 0.00 0.00 4.57
98 99 0.505655 GAACTAACACACGGACGCAC 59.494 55.000 0.00 0.00 0.00 5.34
99 100 0.935831 CGAACTAACACACGGACGCA 60.936 55.000 0.00 0.00 0.00 5.24
100 101 0.936297 ACGAACTAACACACGGACGC 60.936 55.000 0.00 0.00 0.00 5.19
101 102 1.480205 AACGAACTAACACACGGACG 58.520 50.000 0.00 0.00 0.00 4.79
102 103 2.604462 ACAAACGAACTAACACACGGAC 59.396 45.455 0.00 0.00 0.00 4.79
103 104 2.891112 ACAAACGAACTAACACACGGA 58.109 42.857 0.00 0.00 0.00 4.69
104 105 3.661758 AACAAACGAACTAACACACGG 57.338 42.857 0.00 0.00 0.00 4.94
105 106 4.258704 GCAAAACAAACGAACTAACACACG 60.259 41.667 0.00 0.00 0.00 4.49
106 107 4.030865 GGCAAAACAAACGAACTAACACAC 59.969 41.667 0.00 0.00 0.00 3.82
107 108 4.082679 AGGCAAAACAAACGAACTAACACA 60.083 37.500 0.00 0.00 0.00 3.72
108 109 4.417506 AGGCAAAACAAACGAACTAACAC 58.582 39.130 0.00 0.00 0.00 3.32
109 110 4.705337 AGGCAAAACAAACGAACTAACA 57.295 36.364 0.00 0.00 0.00 2.41
110 111 5.096849 TGAAGGCAAAACAAACGAACTAAC 58.903 37.500 0.00 0.00 0.00 2.34
111 112 5.312120 TGAAGGCAAAACAAACGAACTAA 57.688 34.783 0.00 0.00 0.00 2.24
112 113 4.966965 TGAAGGCAAAACAAACGAACTA 57.033 36.364 0.00 0.00 0.00 2.24
113 114 3.859411 TGAAGGCAAAACAAACGAACT 57.141 38.095 0.00 0.00 0.00 3.01
114 115 3.245048 CCATGAAGGCAAAACAAACGAAC 59.755 43.478 0.00 0.00 0.00 3.95
115 116 3.452474 CCATGAAGGCAAAACAAACGAA 58.548 40.909 0.00 0.00 0.00 3.85
116 117 3.090952 CCATGAAGGCAAAACAAACGA 57.909 42.857 0.00 0.00 0.00 3.85
128 129 1.799933 AGGAGGACTAGCCATGAAGG 58.200 55.000 0.00 0.00 40.02 3.46
129 130 4.155709 TGATAGGAGGACTAGCCATGAAG 58.844 47.826 0.00 0.00 37.27 3.02
130 131 4.199002 TGATAGGAGGACTAGCCATGAA 57.801 45.455 0.00 0.00 37.27 2.57
131 132 3.903530 TGATAGGAGGACTAGCCATGA 57.096 47.619 0.00 0.00 37.27 3.07
132 133 4.285517 ACAATGATAGGAGGACTAGCCATG 59.714 45.833 6.07 0.00 37.27 3.66
133 134 4.497516 ACAATGATAGGAGGACTAGCCAT 58.502 43.478 6.07 0.00 37.27 4.40
134 135 3.928754 ACAATGATAGGAGGACTAGCCA 58.071 45.455 6.07 0.00 37.27 4.75
135 136 4.965200 AACAATGATAGGAGGACTAGCC 57.035 45.455 0.00 0.00 37.27 3.93
136 137 8.808092 AGTATTAACAATGATAGGAGGACTAGC 58.192 37.037 0.00 0.00 38.55 3.42
138 139 9.310449 GGAGTATTAACAATGATAGGAGGACTA 57.690 37.037 0.00 0.00 35.80 2.59
139 140 7.235812 GGGAGTATTAACAATGATAGGAGGACT 59.764 40.741 0.00 0.00 0.00 3.85
140 141 7.387643 GGGAGTATTAACAATGATAGGAGGAC 58.612 42.308 0.00 0.00 0.00 3.85
141 142 6.210784 CGGGAGTATTAACAATGATAGGAGGA 59.789 42.308 0.00 0.00 0.00 3.71
142 143 6.210784 TCGGGAGTATTAACAATGATAGGAGG 59.789 42.308 0.00 0.00 0.00 4.30
143 144 7.228314 TCGGGAGTATTAACAATGATAGGAG 57.772 40.000 0.00 0.00 0.00 3.69
144 145 7.792364 ATCGGGAGTATTAACAATGATAGGA 57.208 36.000 0.00 0.00 0.00 2.94
149 150 9.489084 CTTCATTATCGGGAGTATTAACAATGA 57.511 33.333 0.00 0.00 0.00 2.57
150 151 9.273016 ACTTCATTATCGGGAGTATTAACAATG 57.727 33.333 0.00 0.00 0.00 2.82
151 152 9.847224 AACTTCATTATCGGGAGTATTAACAAT 57.153 29.630 0.00 0.00 0.00 2.71
152 153 9.321562 GAACTTCATTATCGGGAGTATTAACAA 57.678 33.333 0.00 0.00 0.00 2.83
153 154 8.701895 AGAACTTCATTATCGGGAGTATTAACA 58.298 33.333 0.00 0.00 0.00 2.41
154 155 9.194271 GAGAACTTCATTATCGGGAGTATTAAC 57.806 37.037 0.00 0.00 0.00 2.01
155 156 8.920174 TGAGAACTTCATTATCGGGAGTATTAA 58.080 33.333 0.00 0.00 30.61 1.40
156 157 8.473358 TGAGAACTTCATTATCGGGAGTATTA 57.527 34.615 0.00 0.00 30.61 0.98
157 158 7.361457 TGAGAACTTCATTATCGGGAGTATT 57.639 36.000 0.00 0.00 30.61 1.89
158 159 6.978674 TGAGAACTTCATTATCGGGAGTAT 57.021 37.500 0.00 0.00 30.61 2.12
159 160 6.785337 TTGAGAACTTCATTATCGGGAGTA 57.215 37.500 0.00 0.00 35.27 2.59
160 161 5.677319 TTGAGAACTTCATTATCGGGAGT 57.323 39.130 0.00 0.00 35.27 3.85
161 162 7.559590 AAATTGAGAACTTCATTATCGGGAG 57.440 36.000 0.00 0.00 35.27 4.30
162 163 7.938140 AAAATTGAGAACTTCATTATCGGGA 57.062 32.000 0.00 0.00 35.27 5.14
170 171 9.546428 CCCTTTGTTTAAAATTGAGAACTTCAT 57.454 29.630 0.00 0.00 35.27 2.57
171 172 8.754080 TCCCTTTGTTTAAAATTGAGAACTTCA 58.246 29.630 0.00 0.00 0.00 3.02
172 173 9.249457 CTCCCTTTGTTTAAAATTGAGAACTTC 57.751 33.333 0.00 0.00 0.00 3.01
173 174 8.204160 CCTCCCTTTGTTTAAAATTGAGAACTT 58.796 33.333 0.00 0.00 0.00 2.66
174 175 7.202001 CCCTCCCTTTGTTTAAAATTGAGAACT 60.202 37.037 0.00 0.00 0.00 3.01
175 176 6.929049 CCCTCCCTTTGTTTAAAATTGAGAAC 59.071 38.462 0.00 0.00 0.00 3.01
176 177 6.841755 TCCCTCCCTTTGTTTAAAATTGAGAA 59.158 34.615 0.00 0.00 0.00 2.87
177 178 6.377912 TCCCTCCCTTTGTTTAAAATTGAGA 58.622 36.000 0.00 0.00 0.00 3.27
178 179 6.664428 TCCCTCCCTTTGTTTAAAATTGAG 57.336 37.500 0.00 0.00 0.00 3.02
179 180 8.728596 TTATCCCTCCCTTTGTTTAAAATTGA 57.271 30.769 0.00 0.00 0.00 2.57
180 181 9.785982 TTTTATCCCTCCCTTTGTTTAAAATTG 57.214 29.630 0.00 0.00 0.00 2.32
183 184 9.387397 AGATTTTATCCCTCCCTTTGTTTAAAA 57.613 29.630 0.00 0.00 0.00 1.52
184 185 8.966155 AGATTTTATCCCTCCCTTTGTTTAAA 57.034 30.769 0.00 0.00 0.00 1.52
187 188 8.966155 TTTAGATTTTATCCCTCCCTTTGTTT 57.034 30.769 0.00 0.00 0.00 2.83
188 189 8.966155 TTTTAGATTTTATCCCTCCCTTTGTT 57.034 30.769 0.00 0.00 0.00 2.83
189 190 8.398743 TCTTTTAGATTTTATCCCTCCCTTTGT 58.601 33.333 0.00 0.00 0.00 2.83
190 191 8.823220 TCTTTTAGATTTTATCCCTCCCTTTG 57.177 34.615 0.00 0.00 0.00 2.77
191 192 9.426534 CATCTTTTAGATTTTATCCCTCCCTTT 57.573 33.333 0.00 0.00 31.32 3.11
192 193 7.507277 GCATCTTTTAGATTTTATCCCTCCCTT 59.493 37.037 0.00 0.00 31.32 3.95
193 194 7.007116 GCATCTTTTAGATTTTATCCCTCCCT 58.993 38.462 0.00 0.00 31.32 4.20
194 195 7.007116 AGCATCTTTTAGATTTTATCCCTCCC 58.993 38.462 0.00 0.00 31.32 4.30
195 196 8.355913 CAAGCATCTTTTAGATTTTATCCCTCC 58.644 37.037 0.00 0.00 31.32 4.30
196 197 8.355913 CCAAGCATCTTTTAGATTTTATCCCTC 58.644 37.037 0.00 0.00 31.32 4.30
197 198 7.841222 ACCAAGCATCTTTTAGATTTTATCCCT 59.159 33.333 0.00 0.00 31.32 4.20
198 199 8.011844 ACCAAGCATCTTTTAGATTTTATCCC 57.988 34.615 0.00 0.00 31.32 3.85
208 209 9.455847 GCAAATTCTATACCAAGCATCTTTTAG 57.544 33.333 0.00 0.00 0.00 1.85
209 210 8.965819 TGCAAATTCTATACCAAGCATCTTTTA 58.034 29.630 0.00 0.00 0.00 1.52
210 211 7.761249 GTGCAAATTCTATACCAAGCATCTTTT 59.239 33.333 0.00 0.00 32.98 2.27
211 212 7.093814 TGTGCAAATTCTATACCAAGCATCTTT 60.094 33.333 0.00 0.00 32.98 2.52
212 213 6.377996 TGTGCAAATTCTATACCAAGCATCTT 59.622 34.615 0.00 0.00 32.98 2.40
213 214 5.887598 TGTGCAAATTCTATACCAAGCATCT 59.112 36.000 0.00 0.00 32.98 2.90
214 215 6.135290 TGTGCAAATTCTATACCAAGCATC 57.865 37.500 0.00 0.00 32.98 3.91
215 216 6.720112 ATGTGCAAATTCTATACCAAGCAT 57.280 33.333 0.00 0.00 32.98 3.79
216 217 7.637631 TTATGTGCAAATTCTATACCAAGCA 57.362 32.000 0.00 0.00 0.00 3.91
217 218 9.612620 GTATTATGTGCAAATTCTATACCAAGC 57.387 33.333 0.00 0.00 0.00 4.01
224 225 9.745018 AGGCATAGTATTATGTGCAAATTCTAT 57.255 29.630 0.00 0.00 38.90 1.98
225 226 9.002600 CAGGCATAGTATTATGTGCAAATTCTA 57.997 33.333 0.00 0.00 38.90 2.10
226 227 7.720957 TCAGGCATAGTATTATGTGCAAATTCT 59.279 33.333 0.00 0.00 38.90 2.40
227 228 7.874940 TCAGGCATAGTATTATGTGCAAATTC 58.125 34.615 0.00 0.00 38.90 2.17
228 229 7.822161 TCAGGCATAGTATTATGTGCAAATT 57.178 32.000 0.00 0.00 38.90 1.82
229 230 7.822161 TTCAGGCATAGTATTATGTGCAAAT 57.178 32.000 7.05 0.00 38.90 2.32
230 231 7.720957 AGATTCAGGCATAGTATTATGTGCAAA 59.279 33.333 7.05 0.00 38.90 3.68
231 232 7.226441 AGATTCAGGCATAGTATTATGTGCAA 58.774 34.615 7.05 0.00 38.90 4.08
232 233 6.772605 AGATTCAGGCATAGTATTATGTGCA 58.227 36.000 7.05 0.00 38.90 4.57
233 234 7.010923 GCTAGATTCAGGCATAGTATTATGTGC 59.989 40.741 7.05 0.00 39.12 4.57
234 235 8.037166 TGCTAGATTCAGGCATAGTATTATGTG 58.963 37.037 7.05 0.00 39.12 3.21
235 236 8.138928 TGCTAGATTCAGGCATAGTATTATGT 57.861 34.615 7.05 0.00 39.12 2.29
239 240 7.768120 GCTTATGCTAGATTCAGGCATAGTATT 59.232 37.037 16.95 2.61 45.52 1.89
240 241 7.093156 TGCTTATGCTAGATTCAGGCATAGTAT 60.093 37.037 16.95 5.30 45.52 2.12
241 242 6.211384 TGCTTATGCTAGATTCAGGCATAGTA 59.789 38.462 16.95 11.46 45.52 1.82
242 243 5.012458 TGCTTATGCTAGATTCAGGCATAGT 59.988 40.000 16.95 3.63 45.52 2.12
243 244 5.485620 TGCTTATGCTAGATTCAGGCATAG 58.514 41.667 16.95 13.84 45.52 2.23
244 245 5.488262 TGCTTATGCTAGATTCAGGCATA 57.512 39.130 15.00 15.00 43.63 3.14
245 246 4.362470 TGCTTATGCTAGATTCAGGCAT 57.638 40.909 16.48 16.48 46.49 4.40
246 247 3.843893 TGCTTATGCTAGATTCAGGCA 57.156 42.857 0.00 6.14 40.48 4.75
247 248 4.024218 CACTTGCTTATGCTAGATTCAGGC 60.024 45.833 16.75 0.00 43.04 4.85
248 249 4.514441 CCACTTGCTTATGCTAGATTCAGG 59.486 45.833 16.75 7.89 43.04 3.86
249 250 5.007430 CACCACTTGCTTATGCTAGATTCAG 59.993 44.000 16.75 5.14 43.04 3.02
250 251 4.877823 CACCACTTGCTTATGCTAGATTCA 59.122 41.667 16.75 0.00 43.04 2.57
251 252 5.118990 TCACCACTTGCTTATGCTAGATTC 58.881 41.667 16.75 0.00 43.04 2.52
252 253 5.102953 TCACCACTTGCTTATGCTAGATT 57.897 39.130 16.75 0.66 43.04 2.40
253 254 4.760530 TCACCACTTGCTTATGCTAGAT 57.239 40.909 16.75 1.52 43.04 1.98
254 255 4.760530 ATCACCACTTGCTTATGCTAGA 57.239 40.909 16.75 0.00 43.04 2.43
255 256 8.663025 CATAATATCACCACTTGCTTATGCTAG 58.337 37.037 9.88 9.88 45.21 3.42
256 257 8.374743 TCATAATATCACCACTTGCTTATGCTA 58.625 33.333 1.96 0.00 40.48 3.49
257 258 7.226441 TCATAATATCACCACTTGCTTATGCT 58.774 34.615 1.96 0.00 40.48 3.79
258 259 7.439157 TCATAATATCACCACTTGCTTATGC 57.561 36.000 0.00 0.00 40.20 3.14
259 260 7.966753 GCATCATAATATCACCACTTGCTTATG 59.033 37.037 0.00 0.00 0.00 1.90
260 261 7.666804 TGCATCATAATATCACCACTTGCTTAT 59.333 33.333 0.00 0.00 0.00 1.73
261 262 6.997476 TGCATCATAATATCACCACTTGCTTA 59.003 34.615 0.00 0.00 0.00 3.09
262 263 5.829391 TGCATCATAATATCACCACTTGCTT 59.171 36.000 0.00 0.00 0.00 3.91
263 264 5.379187 TGCATCATAATATCACCACTTGCT 58.621 37.500 0.00 0.00 0.00 3.91
264 265 5.694231 TGCATCATAATATCACCACTTGC 57.306 39.130 0.00 0.00 0.00 4.01
265 266 7.683437 AGATGCATCATAATATCACCACTTG 57.317 36.000 27.81 0.00 0.00 3.16
266 267 7.392673 GGAAGATGCATCATAATATCACCACTT 59.607 37.037 27.81 8.47 0.00 3.16
267 268 6.883217 GGAAGATGCATCATAATATCACCACT 59.117 38.462 27.81 0.00 0.00 4.00
268 269 6.183360 CGGAAGATGCATCATAATATCACCAC 60.183 42.308 27.81 0.76 0.00 4.16
269 270 5.876460 CGGAAGATGCATCATAATATCACCA 59.124 40.000 27.81 0.00 0.00 4.17
270 271 5.877012 ACGGAAGATGCATCATAATATCACC 59.123 40.000 27.81 10.88 0.00 4.02
271 272 6.369890 ACACGGAAGATGCATCATAATATCAC 59.630 38.462 27.81 2.91 0.00 3.06
272 273 6.466812 ACACGGAAGATGCATCATAATATCA 58.533 36.000 27.81 0.00 0.00 2.15
273 274 6.974932 ACACGGAAGATGCATCATAATATC 57.025 37.500 27.81 14.59 0.00 1.63
274 275 7.750229 AAACACGGAAGATGCATCATAATAT 57.250 32.000 27.81 3.64 0.00 1.28
275 276 7.387673 CCTAAACACGGAAGATGCATCATAATA 59.612 37.037 27.81 7.77 0.00 0.98
276 277 6.205464 CCTAAACACGGAAGATGCATCATAAT 59.795 38.462 27.81 11.31 0.00 1.28
277 278 5.527214 CCTAAACACGGAAGATGCATCATAA 59.473 40.000 27.81 1.42 0.00 1.90
278 279 5.056480 CCTAAACACGGAAGATGCATCATA 58.944 41.667 27.81 6.32 0.00 2.15
279 280 3.879295 CCTAAACACGGAAGATGCATCAT 59.121 43.478 27.81 17.26 0.00 2.45
280 281 3.055458 TCCTAAACACGGAAGATGCATCA 60.055 43.478 27.81 2.76 0.00 3.07
281 282 3.531538 TCCTAAACACGGAAGATGCATC 58.468 45.455 19.37 19.37 0.00 3.91
282 283 3.627395 TCCTAAACACGGAAGATGCAT 57.373 42.857 0.00 0.00 0.00 3.96
283 284 3.627395 ATCCTAAACACGGAAGATGCA 57.373 42.857 0.00 0.00 33.55 3.96
284 285 3.065371 CCAATCCTAAACACGGAAGATGC 59.935 47.826 0.00 0.00 33.55 3.91
285 286 4.261801 ACCAATCCTAAACACGGAAGATG 58.738 43.478 0.00 0.00 33.55 2.90
286 287 4.569719 ACCAATCCTAAACACGGAAGAT 57.430 40.909 0.00 0.00 33.55 2.40
287 288 4.320870 GAACCAATCCTAAACACGGAAGA 58.679 43.478 0.00 0.00 33.55 2.87
288 289 3.124636 CGAACCAATCCTAAACACGGAAG 59.875 47.826 0.00 0.00 33.55 3.46
289 290 3.068560 CGAACCAATCCTAAACACGGAA 58.931 45.455 0.00 0.00 33.55 4.30
290 291 2.299582 TCGAACCAATCCTAAACACGGA 59.700 45.455 0.00 0.00 34.52 4.69
291 292 2.690786 TCGAACCAATCCTAAACACGG 58.309 47.619 0.00 0.00 0.00 4.94
292 293 4.939509 AATCGAACCAATCCTAAACACG 57.060 40.909 0.00 0.00 0.00 4.49
293 294 6.072119 AGGAAAATCGAACCAATCCTAAACAC 60.072 38.462 6.78 0.00 35.59 3.32
294 295 6.007703 AGGAAAATCGAACCAATCCTAAACA 58.992 36.000 6.78 0.00 35.59 2.83
295 296 6.510879 AGGAAAATCGAACCAATCCTAAAC 57.489 37.500 6.78 0.00 35.59 2.01
296 297 8.050325 TCATAGGAAAATCGAACCAATCCTAAA 58.950 33.333 15.32 7.91 41.47 1.85
297 298 7.570132 TCATAGGAAAATCGAACCAATCCTAA 58.430 34.615 15.32 3.25 41.47 2.69
298 299 7.131907 TCATAGGAAAATCGAACCAATCCTA 57.868 36.000 14.30 14.30 42.12 2.94
299 300 6.001449 TCATAGGAAAATCGAACCAATCCT 57.999 37.500 11.64 11.64 40.30 3.24
300 301 6.884280 ATCATAGGAAAATCGAACCAATCC 57.116 37.500 0.00 0.00 0.00 3.01
301 302 8.383619 CGATATCATAGGAAAATCGAACCAATC 58.616 37.037 16.12 0.00 41.66 2.67
302 303 7.878127 ACGATATCATAGGAAAATCGAACCAAT 59.122 33.333 23.69 5.73 41.66 3.16
303 304 7.214381 ACGATATCATAGGAAAATCGAACCAA 58.786 34.615 23.69 0.00 41.66 3.67
304 305 6.755206 ACGATATCATAGGAAAATCGAACCA 58.245 36.000 23.69 0.00 41.66 3.67
305 306 7.091443 AGACGATATCATAGGAAAATCGAACC 58.909 38.462 23.69 15.07 41.66 3.62
306 307 9.790389 ATAGACGATATCATAGGAAAATCGAAC 57.210 33.333 23.69 17.90 41.66 3.95
308 309 8.336080 CGATAGACGATATCATAGGAAAATCGA 58.664 37.037 23.69 9.07 45.77 3.59
309 310 8.123575 ACGATAGACGATATCATAGGAAAATCG 58.876 37.037 18.30 18.30 45.77 3.34
404 406 5.674525 CTTTCCTGGTATTGCACATAGAGA 58.325 41.667 0.00 0.00 0.00 3.10
445 447 3.057969 TCGGATGTTGATGAAGCAACT 57.942 42.857 12.19 0.00 46.31 3.16
663 665 4.453751 TGTCTAACCCAACACACTAAACC 58.546 43.478 0.00 0.00 0.00 3.27
792 797 4.947388 TGCTACACAAGGGACCATTATTTC 59.053 41.667 0.00 0.00 0.00 2.17
799 804 2.827755 TCTATGCTACACAAGGGACCA 58.172 47.619 0.00 0.00 0.00 4.02
831 836 9.918590 CATACATAACGAAAATAATACGTCTCG 57.081 33.333 0.00 0.00 39.31 4.04
907 913 7.156000 TCACCATTATCGTTTGTGAACTTCTA 58.844 34.615 0.00 0.00 33.35 2.10
958 964 2.943199 GCAAGCTCAGCAACCCTCTAAT 60.943 50.000 0.00 0.00 0.00 1.73
1004 1010 5.552870 TTCCTTGTAGAGTGAAGCTTCTT 57.447 39.130 26.09 14.94 0.00 2.52
1025 1031 4.099881 TGTGCTTGCTTGAGAATTCCTTTT 59.900 37.500 0.65 0.00 0.00 2.27
1313 1345 4.796110 ATATGCAGGTGGGTTAATGTCT 57.204 40.909 0.00 0.00 0.00 3.41
1320 1352 5.132648 TCTCTTATCAATATGCAGGTGGGTT 59.867 40.000 0.00 0.00 0.00 4.11
1955 2001 9.521841 TCTTTTGGGTTTTTCCTGTTTTTATTT 57.478 25.926 0.00 0.00 36.25 1.40
1975 2021 5.093169 TGCGGCAAAATCATTTTCTTTTG 57.907 34.783 0.00 3.94 42.50 2.44
2059 2105 5.376854 AAAGGAAATTGTCATTCTCGTGG 57.623 39.130 0.00 0.00 27.74 4.94
2170 2216 7.899330 CGTTAGATTTTTAAGCATGGCAAATTG 59.101 33.333 0.00 0.00 0.00 2.32
2297 2343 5.007034 CCCCATTTGTAAGTGTATGTGTCA 58.993 41.667 0.00 0.00 0.00 3.58
2326 2372 1.608717 ATCGGAGGCTATGGATCGCC 61.609 60.000 1.37 1.37 46.65 5.54
2632 2718 5.797987 AGGTAGGCCTTCCCATGATAAATAT 59.202 40.000 23.89 0.00 44.18 1.28
2725 2811 9.507329 AGATTTTATCTCAAGTTTTGTAGCAGA 57.493 29.630 0.00 0.00 33.42 4.26
2773 2859 0.106419 TTGTGGTTGAACTCACCCCC 60.106 55.000 12.25 0.00 33.29 5.40
2774 2860 1.318576 CTTGTGGTTGAACTCACCCC 58.681 55.000 12.25 0.00 33.29 4.95
2775 2861 1.133915 TCCTTGTGGTTGAACTCACCC 60.134 52.381 12.25 0.00 33.29 4.61
2776 2862 1.947456 GTCCTTGTGGTTGAACTCACC 59.053 52.381 12.25 0.00 33.29 4.02
2777 2863 1.597663 CGTCCTTGTGGTTGAACTCAC 59.402 52.381 9.15 9.15 34.23 3.51
2778 2864 1.474320 CCGTCCTTGTGGTTGAACTCA 60.474 52.381 0.00 0.00 34.23 3.41
2779 2865 1.202604 TCCGTCCTTGTGGTTGAACTC 60.203 52.381 0.00 0.00 34.23 3.01
2780 2866 0.834612 TCCGTCCTTGTGGTTGAACT 59.165 50.000 0.00 0.00 34.23 3.01
2781 2867 1.226746 CTCCGTCCTTGTGGTTGAAC 58.773 55.000 0.00 0.00 34.23 3.18
2782 2868 0.107831 CCTCCGTCCTTGTGGTTGAA 59.892 55.000 0.00 0.00 34.23 2.69
2783 2869 0.761323 TCCTCCGTCCTTGTGGTTGA 60.761 55.000 0.00 0.00 34.23 3.18
2784 2870 0.324943 ATCCTCCGTCCTTGTGGTTG 59.675 55.000 0.00 0.00 34.23 3.77
2785 2871 0.324943 CATCCTCCGTCCTTGTGGTT 59.675 55.000 0.00 0.00 34.23 3.67
2786 2872 0.544357 TCATCCTCCGTCCTTGTGGT 60.544 55.000 0.00 0.00 34.23 4.16
2787 2873 0.613260 TTCATCCTCCGTCCTTGTGG 59.387 55.000 0.00 0.00 0.00 4.17
2788 2874 1.001974 TGTTCATCCTCCGTCCTTGTG 59.998 52.381 0.00 0.00 0.00 3.33
2789 2875 1.348064 TGTTCATCCTCCGTCCTTGT 58.652 50.000 0.00 0.00 0.00 3.16
2790 2876 2.283298 CATGTTCATCCTCCGTCCTTG 58.717 52.381 0.00 0.00 0.00 3.61
2791 2877 1.407437 GCATGTTCATCCTCCGTCCTT 60.407 52.381 0.00 0.00 0.00 3.36
2792 2878 0.179000 GCATGTTCATCCTCCGTCCT 59.821 55.000 0.00 0.00 0.00 3.85
2793 2879 0.815615 GGCATGTTCATCCTCCGTCC 60.816 60.000 0.00 0.00 0.00 4.79
2794 2880 0.815615 GGGCATGTTCATCCTCCGTC 60.816 60.000 0.00 0.00 0.00 4.79
2795 2881 1.224592 GGGCATGTTCATCCTCCGT 59.775 57.895 0.00 0.00 0.00 4.69
2796 2882 1.889105 CGGGCATGTTCATCCTCCG 60.889 63.158 0.00 0.00 0.00 4.63
2797 2883 0.394352 AACGGGCATGTTCATCCTCC 60.394 55.000 0.00 0.00 0.00 4.30
2798 2884 1.017387 GAACGGGCATGTTCATCCTC 58.983 55.000 14.61 0.00 45.92 3.71
2799 2885 3.175133 GAACGGGCATGTTCATCCT 57.825 52.632 14.61 0.00 45.92 3.24
2804 2890 0.887933 AATGGTGAACGGGCATGTTC 59.112 50.000 13.13 13.13 46.63 3.18
2805 2891 1.000731 CAAATGGTGAACGGGCATGTT 59.999 47.619 0.00 0.00 34.02 2.71
2806 2892 0.602562 CAAATGGTGAACGGGCATGT 59.397 50.000 0.00 0.00 0.00 3.21
2807 2893 0.108709 CCAAATGGTGAACGGGCATG 60.109 55.000 0.00 0.00 0.00 4.06
2808 2894 0.251564 TCCAAATGGTGAACGGGCAT 60.252 50.000 0.00 0.00 36.34 4.40
2809 2895 0.893270 CTCCAAATGGTGAACGGGCA 60.893 55.000 0.00 0.00 36.34 5.36
2810 2896 0.893727 ACTCCAAATGGTGAACGGGC 60.894 55.000 8.41 0.00 36.34 6.13
2811 2897 0.881118 CACTCCAAATGGTGAACGGG 59.119 55.000 8.41 0.00 35.69 5.28
2812 2898 0.240945 GCACTCCAAATGGTGAACGG 59.759 55.000 8.41 0.00 35.69 4.44
2813 2899 0.950836 TGCACTCCAAATGGTGAACG 59.049 50.000 8.41 0.00 35.69 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.