Multiple sequence alignment - TraesCS7A01G261300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G261300 chr7A 100.000 3975 0 0 1 3975 255581786 255577812 0.000000e+00 7341
1 TraesCS7A01G261300 chr7A 92.800 125 6 2 3738 3859 228259731 228259855 1.140000e-40 178
2 TraesCS7A01G261300 chr7D 92.993 3525 151 43 1 3448 242407639 242411144 0.000000e+00 5053
3 TraesCS7A01G261300 chr7D 89.908 218 17 4 3437 3649 242412330 242412547 3.910000e-70 276
4 TraesCS7A01G261300 chr7D 91.870 123 6 2 3741 3859 269697350 269697228 6.830000e-38 169
5 TraesCS7A01G261300 chr7D 91.870 123 6 3 3741 3859 438063269 438063147 6.830000e-38 169
6 TraesCS7A01G261300 chr7D 91.667 120 7 2 3741 3857 22811831 22811712 3.180000e-36 163
7 TraesCS7A01G261300 chr7D 98.780 82 1 0 3894 3975 405389521 405389440 3.200000e-31 147
8 TraesCS7A01G261300 chr7B 91.784 3542 154 66 1 3448 218382410 218385908 0.000000e+00 4802
9 TraesCS7A01G261300 chr7B 92.958 71 5 0 1831 1901 224735982 224735912 1.950000e-18 104
10 TraesCS7A01G261300 chr7B 86.458 96 11 2 3647 3742 658456561 658456468 1.950000e-18 104
11 TraesCS7A01G261300 chr3D 93.333 120 5 2 3743 3859 332507841 332507960 1.470000e-39 174
12 TraesCS7A01G261300 chr3D 92.623 122 6 2 3741 3859 459196071 459195950 5.280000e-39 172
13 TraesCS7A01G261300 chr3D 90.526 95 8 1 3645 3739 118422580 118422673 1.500000e-24 124
14 TraesCS7A01G261300 chr3D 90.323 93 8 1 3647 3739 192059875 192059966 1.940000e-23 121
15 TraesCS7A01G261300 chr2D 91.270 126 8 2 3738 3860 34898077 34898202 6.830000e-38 169
16 TraesCS7A01G261300 chr2D 98.780 82 1 0 3894 3975 54130431 54130512 3.200000e-31 147
17 TraesCS7A01G261300 chr2D 98.780 82 1 0 3894 3975 429838500 429838419 3.200000e-31 147
18 TraesCS7A01G261300 chr2D 87.500 96 11 1 3647 3742 34965559 34965465 4.200000e-20 110
19 TraesCS7A01G261300 chr4D 91.667 120 7 2 3743 3859 105139520 105139401 3.180000e-36 163
20 TraesCS7A01G261300 chr4D 97.701 87 2 0 3889 3975 221284711 221284797 2.470000e-32 150
21 TraesCS7A01G261300 chr4D 91.667 72 6 0 1831 1902 356511510 356511439 2.530000e-17 100
22 TraesCS7A01G261300 chr1D 90.400 125 9 2 3741 3862 63917472 63917348 1.140000e-35 161
23 TraesCS7A01G261300 chr1D 98.780 82 1 0 3894 3975 377015022 377015103 3.200000e-31 147
24 TraesCS7A01G261300 chr1D 85.217 115 13 4 3642 3754 495238701 495238589 9.030000e-22 115
25 TraesCS7A01G261300 chr2A 98.795 83 1 0 3893 3975 329112596 329112678 8.900000e-32 148
26 TraesCS7A01G261300 chr2A 88.298 94 8 3 3647 3739 651133264 651133355 4.200000e-20 110
27 TraesCS7A01G261300 chr4A 98.780 82 1 0 3894 3975 721363194 721363275 3.200000e-31 147
28 TraesCS7A01G261300 chr1B 96.552 87 3 0 3889 3975 568987025 568987111 1.150000e-30 145
29 TraesCS7A01G261300 chr6D 90.654 107 8 2 3870 3975 448696612 448696717 1.490000e-29 141
30 TraesCS7A01G261300 chr2B 90.625 96 8 1 3647 3742 556805681 556805587 4.170000e-25 126
31 TraesCS7A01G261300 chr6B 87.755 98 10 2 3645 3742 592944225 592944130 3.250000e-21 113
32 TraesCS7A01G261300 chr6B 93.056 72 5 0 1831 1902 33295876 33295947 5.430000e-19 106
33 TraesCS7A01G261300 chr4B 86.458 96 12 1 3644 3739 1176941 1177035 1.950000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G261300 chr7A 255577812 255581786 3974 True 7341.0 7341 100.0000 1 3975 1 chr7A.!!$R1 3974
1 TraesCS7A01G261300 chr7D 242407639 242412547 4908 False 2664.5 5053 91.4505 1 3649 2 chr7D.!!$F1 3648
2 TraesCS7A01G261300 chr7B 218382410 218385908 3498 False 4802.0 4802 91.7840 1 3448 1 chr7B.!!$F1 3447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
191 209 0.471617 ATTTGCTCCTCGGATCTGGG 59.528 55.0 0.62 0.0 0.0 4.45 F
1705 1745 0.036732 GATCTGCTGGTGTGTTCCCA 59.963 55.0 0.00 0.0 0.0 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 1941 3.434739 GGGAGATCCAGCTTGTCATTGAT 60.435 47.826 0.47 0.0 37.91 2.57 R
3365 3460 0.038892 GTGGGTGTGCATTGAGCTTG 60.039 55.000 0.00 0.0 45.94 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 3.052082 CGAACTGGTGCCTGCCTG 61.052 66.667 0.00 0.00 0.00 4.85
139 157 2.623763 TAGCCCTCCTCTCCCCCA 60.624 66.667 0.00 0.00 0.00 4.96
144 162 0.624500 CCCTCCTCTCCCCCAATTCA 60.625 60.000 0.00 0.00 0.00 2.57
150 168 1.855599 CTCTCCCCCAATTCATCCCTT 59.144 52.381 0.00 0.00 0.00 3.95
191 209 0.471617 ATTTGCTCCTCGGATCTGGG 59.528 55.000 0.62 0.00 0.00 4.45
195 213 1.456518 CTCCTCGGATCTGGGCTCA 60.457 63.158 0.62 0.00 0.00 4.26
235 253 1.606994 CGTGATCCGTTTTCCTGTCCA 60.607 52.381 0.00 0.00 0.00 4.02
256 274 6.861572 GTCCAAGTAATTTCTAGGTGTTTTGC 59.138 38.462 0.00 0.00 0.00 3.68
283 301 3.195661 AGATCTCGCCGAATTTGGTTAC 58.804 45.455 13.49 0.00 0.00 2.50
302 320 2.807622 GTGGATGAAATGCCGGGC 59.192 61.111 13.32 13.32 31.31 6.13
311 329 2.207788 AAATGCCGGGCGTGTTTAGC 62.208 55.000 15.76 0.00 0.00 3.09
389 407 2.026641 CATCATTGGGAAATCGGTGCT 58.973 47.619 0.00 0.00 0.00 4.40
402 420 3.048337 TCGGTGCTAAATCGAGGTTTT 57.952 42.857 0.00 0.00 0.00 2.43
457 475 1.006832 GAATTGCGGTAGTCATGCGT 58.993 50.000 0.00 0.00 0.00 5.24
462 480 3.439895 TGCGGTAGTCATGCGTAAATA 57.560 42.857 0.00 0.00 0.00 1.40
463 481 3.377439 TGCGGTAGTCATGCGTAAATAG 58.623 45.455 0.00 0.00 0.00 1.73
464 482 2.155155 GCGGTAGTCATGCGTAAATAGC 59.845 50.000 0.00 0.00 0.00 2.97
465 483 3.639538 CGGTAGTCATGCGTAAATAGCT 58.360 45.455 0.00 0.00 35.28 3.32
491 509 2.124487 TAAAATCCGGCGCCCCTG 60.124 61.111 23.46 10.16 0.00 4.45
517 535 0.872021 CGCTCGGTGATGCTTAGGTC 60.872 60.000 0.00 0.00 0.00 3.85
569 587 2.821969 AGTTCATGGTGAATTCCTGTGC 59.178 45.455 2.27 0.00 38.79 4.57
575 593 4.179579 GAATTCCTGTGCGGCGGC 62.180 66.667 9.78 9.68 40.52 6.53
677 695 7.463251 GCTCAACAGAAATGAAGTGTTTGTTTC 60.463 37.037 0.00 0.00 32.01 2.78
679 697 5.339990 ACAGAAATGAAGTGTTTGTTTCCG 58.660 37.500 0.00 0.00 31.02 4.30
726 744 1.071471 AGTGCCCACAGTGTAGTGC 59.929 57.895 0.00 0.00 38.18 4.40
733 751 2.621338 CCACAGTGTAGTGCAATCGAT 58.379 47.619 0.00 0.00 38.18 3.59
740 758 6.072508 ACAGTGTAGTGCAATCGATTTTCATT 60.073 34.615 8.21 8.85 0.00 2.57
813 831 5.769662 TGTGAAAACCATCTAATCTGCACTT 59.230 36.000 0.00 0.00 0.00 3.16
821 839 5.346822 CCATCTAATCTGCACTTGTTTTTGC 59.653 40.000 0.00 0.00 39.33 3.68
837 877 7.462109 TGTTTTTGCTGTCATATTGTTGTTC 57.538 32.000 0.00 0.00 0.00 3.18
851 891 8.791605 CATATTGTTGTTCGATTGAATGACTTG 58.208 33.333 0.00 0.00 36.29 3.16
862 902 2.371841 TGAATGACTTGGTACTGCCTGT 59.628 45.455 0.00 0.00 38.35 4.00
890 930 5.446143 ACATTTATGAAAAACGCTCCACA 57.554 34.783 0.00 0.00 0.00 4.17
904 944 4.141846 ACGCTCCACACATTTATCAGAGAT 60.142 41.667 0.00 0.00 0.00 2.75
953 993 2.158549 AGGAGAGGCAGCAGTTTCTTTT 60.159 45.455 0.00 0.00 0.00 2.27
1095 1135 1.003696 GAACCCTGCAGTTCTAAGCCT 59.996 52.381 13.81 0.00 42.37 4.58
1098 1138 1.677217 CCCTGCAGTTCTAAGCCTGTC 60.677 57.143 13.81 0.00 0.00 3.51
1277 1317 5.049129 GCCTCTAGTTGTTCATATTCATGCC 60.049 44.000 0.00 0.00 31.73 4.40
1308 1348 6.317789 TGGATGCTTAAAGTTCTTTCTGTG 57.682 37.500 0.87 0.00 0.00 3.66
1352 1392 4.454728 TTTTCAACAGACTTTGCTTGCT 57.545 36.364 0.00 0.00 0.00 3.91
1619 1659 4.036518 AGAATCCAAGGAGTGCTCTATGT 58.963 43.478 0.00 0.00 0.00 2.29
1702 1742 3.076621 TGATTGATCTGCTGGTGTGTTC 58.923 45.455 0.00 0.00 0.00 3.18
1705 1745 0.036732 GATCTGCTGGTGTGTTCCCA 59.963 55.000 0.00 0.00 0.00 4.37
1706 1746 0.250901 ATCTGCTGGTGTGTTCCCAC 60.251 55.000 0.00 0.00 42.19 4.61
1749 1789 9.061610 GTTAAATATTGTTGTGCATGACTGTAC 57.938 33.333 0.00 0.00 38.36 2.90
1750 1790 6.816134 AATATTGTTGTGCATGACTGTACA 57.184 33.333 0.00 0.00 44.82 2.90
1820 1860 9.390795 CTCTTAAAACATCTTGTCTGTCAAATG 57.609 33.333 7.59 7.59 35.48 2.32
2040 2080 2.701107 GCCTTGTAAGTGGAAGTCTCC 58.299 52.381 0.00 0.00 42.81 3.71
2041 2081 2.303311 GCCTTGTAAGTGGAAGTCTCCT 59.697 50.000 0.00 0.00 42.94 3.69
2194 2237 4.640771 TGACCTCCTTGTGCTATTCTTT 57.359 40.909 0.00 0.00 0.00 2.52
2223 2266 6.150641 GTCCATGGGGTTTAGTTAAGAGTTTC 59.849 42.308 13.02 0.00 34.93 2.78
2235 2278 5.469084 AGTTAAGAGTTTCCATTGAACGTCC 59.531 40.000 0.00 0.00 32.38 4.79
2248 2291 1.531578 GAACGTCCTCCAGAAGTTTGC 59.468 52.381 0.00 0.00 45.64 3.68
2290 2333 7.288672 CAGATGCTTTGCTTGAATTTTCTTTC 58.711 34.615 0.00 0.00 0.00 2.62
2295 2338 7.042321 TGCTTTGCTTGAATTTTCTTTCTCATG 60.042 33.333 0.00 0.00 0.00 3.07
2339 2383 3.381045 CAGATGATTTCATGCATGTGGC 58.619 45.455 25.43 13.96 45.13 5.01
2371 2415 7.129457 TGATGAGTTCAGAATATTAGTGGCT 57.871 36.000 0.00 0.00 0.00 4.75
2376 2420 7.124298 TGAGTTCAGAATATTAGTGGCTACTGT 59.876 37.037 13.76 4.11 37.78 3.55
2394 2438 7.259161 GCTACTGTATGTTTAGCTGTAGTCTT 58.741 38.462 0.00 0.00 37.16 3.01
2518 2563 5.695851 ACTCTTGGTTGCTGTTCTAAATG 57.304 39.130 0.00 0.00 0.00 2.32
2523 2594 8.856153 TCTTGGTTGCTGTTCTAAATGTTATA 57.144 30.769 0.00 0.00 0.00 0.98
2657 2728 0.796927 GGCTGCTCGTAACCTTTCAC 59.203 55.000 0.00 0.00 0.00 3.18
2665 2736 3.159472 TCGTAACCTTTCACTGGAGCTA 58.841 45.455 0.00 0.00 0.00 3.32
2700 2771 2.301583 AGAAGTCTCAAGCCTCTGGTTC 59.698 50.000 0.00 0.00 0.00 3.62
2703 2774 0.322975 TCTCAAGCCTCTGGTTCAGC 59.677 55.000 0.00 0.00 0.00 4.26
2713 2784 1.623311 TCTGGTTCAGCCGAAGATGAA 59.377 47.619 0.00 0.00 41.21 2.57
2716 2787 2.224523 TGGTTCAGCCGAAGATGAAAGT 60.225 45.455 0.00 0.00 41.21 2.66
2761 2832 0.853530 AAACCTGGGAGGCTTTCTGT 59.146 50.000 0.00 0.00 39.63 3.41
2776 2847 5.525745 GGCTTTCTGTCTATCTAAGCTTTCC 59.474 44.000 3.20 0.00 40.66 3.13
2777 2848 6.109359 GCTTTCTGTCTATCTAAGCTTTCCA 58.891 40.000 3.20 0.00 38.47 3.53
2908 2979 0.250901 AAGGCGGCATCTCTGTTGTT 60.251 50.000 13.08 0.00 0.00 2.83
2989 3060 1.296715 CTAGCGTTGGGAGTTGGCT 59.703 57.895 0.00 0.00 37.73 4.75
3029 3100 4.928615 GCGATTTTTCCACATCCAATTCAA 59.071 37.500 0.00 0.00 0.00 2.69
3057 3128 4.013728 TGCTGTACATGGTTTATGGGTTC 58.986 43.478 0.00 0.00 41.25 3.62
3061 3132 4.289934 TGTACATGGTTTATGGGTTCCTCA 59.710 41.667 0.00 0.00 41.25 3.86
3202 3274 5.647658 TCACTACTTATCAGTTTGGCATTGG 59.352 40.000 0.00 0.00 34.06 3.16
3241 3313 4.963373 TGTAGAATTTCTTCCACCGTTCA 58.037 39.130 3.86 0.00 31.27 3.18
3265 3337 2.337359 TTGGAGTACTACAGCCCCTT 57.663 50.000 8.07 0.00 0.00 3.95
3266 3338 1.861982 TGGAGTACTACAGCCCCTTC 58.138 55.000 2.78 0.00 0.00 3.46
3267 3339 1.361543 TGGAGTACTACAGCCCCTTCT 59.638 52.381 2.78 0.00 0.00 2.85
3281 3353 5.011023 CAGCCCCTTCTTTTCTTTATGTGTT 59.989 40.000 0.00 0.00 0.00 3.32
3321 3394 4.787381 ATTTGCGTTTTGTGGTTTTAGC 57.213 36.364 0.00 0.00 0.00 3.09
3326 3399 3.000825 GCGTTTTGTGGTTTTAGCTTTGG 59.999 43.478 0.00 0.00 0.00 3.28
3365 3460 1.377202 TTCCAACCGGAGCTGCATC 60.377 57.895 9.46 0.00 44.10 3.91
3392 3487 0.393808 ATGCACACCCACCGATAACC 60.394 55.000 0.00 0.00 0.00 2.85
3393 3488 2.104253 GCACACCCACCGATAACCG 61.104 63.158 0.00 0.00 38.18 4.44
3418 3513 3.057596 GTCATAATCAGGAGAGCGGAGAG 60.058 52.174 0.00 0.00 0.00 3.20
3429 3524 2.524300 GCGGAGAGCGTTTGTAACA 58.476 52.632 0.00 0.00 35.41 2.41
3449 4741 4.877773 ACAGGAGTCATAATCAGGAGAGT 58.122 43.478 0.00 0.00 0.00 3.24
3499 4793 2.724839 GCTGCCGTGTATTTTTGAGACG 60.725 50.000 0.00 0.00 0.00 4.18
3502 4796 3.185594 TGCCGTGTATTTTTGAGACGAAG 59.814 43.478 0.00 0.00 31.71 3.79
3554 4851 7.770897 AGACTATTTACATTGTTCATGAGGGTC 59.229 37.037 0.00 0.00 36.24 4.46
3579 4876 6.146184 CGCAAGATAATATCGAGGTGTTCATT 59.854 38.462 0.00 0.00 43.02 2.57
3593 4890 4.013728 GTGTTCATTGGCCCAAGTACATA 58.986 43.478 1.16 0.00 0.00 2.29
3643 4940 0.588252 CCATGATTCATTCGCGTCCC 59.412 55.000 5.77 0.00 0.00 4.46
3649 4946 2.579207 TTCATTCGCGTCCCTTAGAG 57.421 50.000 5.77 0.00 0.00 2.43
3650 4947 0.102481 TCATTCGCGTCCCTTAGAGC 59.898 55.000 5.77 0.00 0.00 4.09
3651 4948 0.179111 CATTCGCGTCCCTTAGAGCA 60.179 55.000 5.77 0.00 0.00 4.26
3652 4949 0.535335 ATTCGCGTCCCTTAGAGCAA 59.465 50.000 5.77 0.00 0.00 3.91
3653 4950 0.389426 TTCGCGTCCCTTAGAGCAAC 60.389 55.000 5.77 0.00 0.00 4.17
3654 4951 1.215647 CGCGTCCCTTAGAGCAACT 59.784 57.895 0.00 0.00 0.00 3.16
3655 4952 0.802607 CGCGTCCCTTAGAGCAACTC 60.803 60.000 0.00 0.00 0.00 3.01
3656 4953 0.460459 GCGTCCCTTAGAGCAACTCC 60.460 60.000 0.00 0.00 0.00 3.85
3657 4954 0.895530 CGTCCCTTAGAGCAACTCCA 59.104 55.000 0.00 0.00 0.00 3.86
3658 4955 1.275291 CGTCCCTTAGAGCAACTCCAA 59.725 52.381 0.00 0.00 0.00 3.53
3659 4956 2.093447 CGTCCCTTAGAGCAACTCCAAT 60.093 50.000 0.00 0.00 0.00 3.16
3660 4957 3.274288 GTCCCTTAGAGCAACTCCAATG 58.726 50.000 0.00 0.00 0.00 2.82
3661 4958 2.239654 TCCCTTAGAGCAACTCCAATGG 59.760 50.000 0.00 0.00 0.00 3.16
3662 4959 2.648059 CCTTAGAGCAACTCCAATGGG 58.352 52.381 0.00 0.00 0.00 4.00
3663 4960 2.648059 CTTAGAGCAACTCCAATGGGG 58.352 52.381 0.00 0.00 38.37 4.96
3664 4961 0.255890 TAGAGCAACTCCAATGGGGC 59.744 55.000 0.00 0.00 36.21 5.80
3665 4962 2.361610 AGCAACTCCAATGGGGCG 60.362 61.111 0.00 0.00 36.21 6.13
3666 4963 2.361104 GCAACTCCAATGGGGCGA 60.361 61.111 0.00 0.00 36.21 5.54
3667 4964 1.754234 GCAACTCCAATGGGGCGAT 60.754 57.895 0.00 0.00 36.21 4.58
3668 4965 1.728490 GCAACTCCAATGGGGCGATC 61.728 60.000 0.00 0.00 36.21 3.69
3669 4966 1.103398 CAACTCCAATGGGGCGATCC 61.103 60.000 0.00 0.00 36.21 3.36
3670 4967 1.570857 AACTCCAATGGGGCGATCCA 61.571 55.000 0.00 0.00 41.60 3.41
3671 4968 1.227102 CTCCAATGGGGCGATCCAA 59.773 57.895 0.00 0.00 40.62 3.53
3672 4969 0.395586 CTCCAATGGGGCGATCCAAA 60.396 55.000 0.00 0.00 40.62 3.28
3673 4970 0.682855 TCCAATGGGGCGATCCAAAC 60.683 55.000 0.00 0.00 40.62 2.93
3674 4971 1.433064 CAATGGGGCGATCCAAACG 59.567 57.895 1.33 0.00 40.62 3.60
3675 4972 1.752694 AATGGGGCGATCCAAACGG 60.753 57.895 1.33 0.00 40.62 4.44
3676 4973 2.204865 AATGGGGCGATCCAAACGGA 62.205 55.000 1.33 0.00 40.62 4.69
3677 4974 2.822701 GGGGCGATCCAAACGGAC 60.823 66.667 0.00 0.00 34.62 4.79
3678 4975 3.192922 GGGCGATCCAAACGGACG 61.193 66.667 0.00 0.00 34.62 4.79
3679 4976 3.192922 GGCGATCCAAACGGACGG 61.193 66.667 0.00 0.00 34.62 4.79
3680 4977 3.861263 GCGATCCAAACGGACGGC 61.861 66.667 0.00 0.00 34.62 5.68
3681 4978 3.550992 CGATCCAAACGGACGGCG 61.551 66.667 4.80 4.80 34.62 6.46
3682 4979 2.125832 GATCCAAACGGACGGCGA 60.126 61.111 16.62 0.00 34.62 5.54
3683 4980 1.520787 GATCCAAACGGACGGCGAT 60.521 57.895 16.62 0.00 34.62 4.58
3684 4981 1.078708 ATCCAAACGGACGGCGATT 60.079 52.632 16.62 0.00 34.62 3.34
3685 4982 0.675522 ATCCAAACGGACGGCGATTT 60.676 50.000 16.62 5.62 34.62 2.17
3686 4983 1.133869 CCAAACGGACGGCGATTTC 59.866 57.895 16.62 0.00 0.00 2.17
3687 4984 1.225637 CAAACGGACGGCGATTTCG 60.226 57.895 16.62 13.70 43.27 3.46
3688 4985 1.665599 AAACGGACGGCGATTTCGT 60.666 52.632 16.62 14.37 44.03 3.85
3693 4990 2.564975 ACGGCGATTTCGTCTCGT 59.435 55.556 16.62 7.47 42.59 4.18
3694 4991 1.080974 ACGGCGATTTCGTCTCGTT 60.081 52.632 16.62 0.00 42.59 3.85
3695 4992 0.665369 ACGGCGATTTCGTCTCGTTT 60.665 50.000 16.62 0.00 42.59 3.60
3696 4993 0.437295 CGGCGATTTCGTCTCGTTTT 59.563 50.000 0.00 0.00 42.59 2.43
3697 4994 1.136446 CGGCGATTTCGTCTCGTTTTT 60.136 47.619 0.00 0.00 42.59 1.94
3713 5010 2.674796 TTTTTGTCCGTTTGGGTTGG 57.325 45.000 0.00 0.00 37.00 3.77
3714 5011 0.175989 TTTTGTCCGTTTGGGTTGGC 59.824 50.000 0.00 0.00 37.00 4.52
3715 5012 1.677637 TTTGTCCGTTTGGGTTGGCC 61.678 55.000 0.00 0.00 37.00 5.36
3716 5013 3.666253 GTCCGTTTGGGTTGGCCG 61.666 66.667 0.00 0.00 37.00 6.13
3717 5014 4.192453 TCCGTTTGGGTTGGCCGT 62.192 61.111 0.00 0.00 37.00 5.68
3718 5015 3.666253 CCGTTTGGGTTGGCCGTC 61.666 66.667 0.00 0.00 34.97 4.79
3719 5016 3.666253 CGTTTGGGTTGGCCGTCC 61.666 66.667 0.00 2.32 34.97 4.79
3720 5017 3.666253 GTTTGGGTTGGCCGTCCG 61.666 66.667 0.00 0.00 34.97 4.79
3740 5037 4.052229 CGGCGTCCGTCCTGTTCT 62.052 66.667 9.69 0.00 42.73 3.01
3741 5038 2.693762 CGGCGTCCGTCCTGTTCTA 61.694 63.158 9.69 0.00 42.73 2.10
3742 5039 1.814527 GGCGTCCGTCCTGTTCTAT 59.185 57.895 0.00 0.00 0.00 1.98
3743 5040 0.175073 GGCGTCCGTCCTGTTCTATT 59.825 55.000 0.00 0.00 0.00 1.73
3744 5041 1.405121 GGCGTCCGTCCTGTTCTATTT 60.405 52.381 0.00 0.00 0.00 1.40
3745 5042 2.344025 GCGTCCGTCCTGTTCTATTTT 58.656 47.619 0.00 0.00 0.00 1.82
3746 5043 2.740447 GCGTCCGTCCTGTTCTATTTTT 59.260 45.455 0.00 0.00 0.00 1.94
3747 5044 3.928375 GCGTCCGTCCTGTTCTATTTTTA 59.072 43.478 0.00 0.00 0.00 1.52
3748 5045 4.569564 GCGTCCGTCCTGTTCTATTTTTAT 59.430 41.667 0.00 0.00 0.00 1.40
3749 5046 5.064325 GCGTCCGTCCTGTTCTATTTTTATT 59.936 40.000 0.00 0.00 0.00 1.40
3750 5047 6.702897 CGTCCGTCCTGTTCTATTTTTATTC 58.297 40.000 0.00 0.00 0.00 1.75
3751 5048 6.507456 CGTCCGTCCTGTTCTATTTTTATTCG 60.507 42.308 0.00 0.00 0.00 3.34
3752 5049 5.813672 TCCGTCCTGTTCTATTTTTATTCGG 59.186 40.000 0.00 0.00 0.00 4.30
3753 5050 5.499047 CGTCCTGTTCTATTTTTATTCGGC 58.501 41.667 0.00 0.00 0.00 5.54
3754 5051 5.293569 CGTCCTGTTCTATTTTTATTCGGCT 59.706 40.000 0.00 0.00 0.00 5.52
3755 5052 6.183360 CGTCCTGTTCTATTTTTATTCGGCTT 60.183 38.462 0.00 0.00 0.00 4.35
3756 5053 6.967199 GTCCTGTTCTATTTTTATTCGGCTTG 59.033 38.462 0.00 0.00 0.00 4.01
3757 5054 6.657541 TCCTGTTCTATTTTTATTCGGCTTGT 59.342 34.615 0.00 0.00 0.00 3.16
3758 5055 7.825270 TCCTGTTCTATTTTTATTCGGCTTGTA 59.175 33.333 0.00 0.00 0.00 2.41
3759 5056 8.455682 CCTGTTCTATTTTTATTCGGCTTGTAA 58.544 33.333 0.00 0.00 0.00 2.41
3760 5057 9.834628 CTGTTCTATTTTTATTCGGCTTGTAAA 57.165 29.630 0.00 0.00 0.00 2.01
3774 5071 9.997482 TTCGGCTTGTAAAACTATGATTTATTC 57.003 29.630 0.00 0.00 0.00 1.75
3775 5072 8.332464 TCGGCTTGTAAAACTATGATTTATTCG 58.668 33.333 0.00 0.00 0.00 3.34
3776 5073 8.332464 CGGCTTGTAAAACTATGATTTATTCGA 58.668 33.333 0.00 0.00 0.00 3.71
3833 5130 7.203255 TGCAAATTCATCAATGCAAAATTGA 57.797 28.000 3.81 3.81 45.04 2.57
3834 5131 7.301789 TGCAAATTCATCAATGCAAAATTGAG 58.698 30.769 7.27 1.11 45.04 3.02
3835 5132 6.250527 GCAAATTCATCAATGCAAAATTGAGC 59.749 34.615 7.27 0.53 40.80 4.26
3836 5133 7.526608 CAAATTCATCAATGCAAAATTGAGCT 58.473 30.769 7.27 0.00 40.80 4.09
3837 5134 8.661257 CAAATTCATCAATGCAAAATTGAGCTA 58.339 29.630 7.27 0.00 40.80 3.32
3838 5135 8.958119 AATTCATCAATGCAAAATTGAGCTAT 57.042 26.923 7.27 0.00 40.80 2.97
3839 5136 8.958119 ATTCATCAATGCAAAATTGAGCTATT 57.042 26.923 7.27 0.00 40.80 1.73
3840 5137 8.780846 TTCATCAATGCAAAATTGAGCTATTT 57.219 26.923 7.27 0.00 40.80 1.40
3841 5138 8.192068 TCATCAATGCAAAATTGAGCTATTTG 57.808 30.769 7.27 8.58 40.80 2.32
3842 5139 7.820386 TCATCAATGCAAAATTGAGCTATTTGT 59.180 29.630 7.27 0.00 40.80 2.83
3843 5140 7.966246 TCAATGCAAAATTGAGCTATTTGTT 57.034 28.000 12.51 1.99 36.63 2.83
3844 5141 7.798801 TCAATGCAAAATTGAGCTATTTGTTG 58.201 30.769 12.51 10.56 36.63 3.33
3845 5142 7.656542 TCAATGCAAAATTGAGCTATTTGTTGA 59.343 29.630 12.51 11.97 36.63 3.18
3846 5143 7.966246 ATGCAAAATTGAGCTATTTGTTGAA 57.034 28.000 12.51 0.54 36.63 2.69
3847 5144 7.783090 TGCAAAATTGAGCTATTTGTTGAAA 57.217 28.000 12.51 0.00 36.63 2.69
3848 5145 8.380743 TGCAAAATTGAGCTATTTGTTGAAAT 57.619 26.923 12.51 0.00 36.63 2.17
3849 5146 8.838365 TGCAAAATTGAGCTATTTGTTGAAATT 58.162 25.926 12.51 0.00 36.63 1.82
3850 5147 9.109533 GCAAAATTGAGCTATTTGTTGAAATTG 57.890 29.630 12.51 0.00 36.63 2.32
3851 5148 9.601971 CAAAATTGAGCTATTTGTTGAAATTGG 57.398 29.630 0.00 0.00 33.63 3.16
3852 5149 7.910441 AATTGAGCTATTTGTTGAAATTGGG 57.090 32.000 0.00 0.00 33.63 4.12
3853 5150 4.819769 TGAGCTATTTGTTGAAATTGGGC 58.180 39.130 0.00 0.00 33.63 5.36
3854 5151 3.848726 AGCTATTTGTTGAAATTGGGCG 58.151 40.909 0.00 0.00 33.63 6.13
3855 5152 2.929398 GCTATTTGTTGAAATTGGGCGG 59.071 45.455 0.00 0.00 33.63 6.13
3856 5153 1.807139 ATTTGTTGAAATTGGGCGGC 58.193 45.000 0.00 0.00 0.00 6.53
3857 5154 0.250081 TTTGTTGAAATTGGGCGGCC 60.250 50.000 23.42 23.42 0.00 6.13
3858 5155 1.402896 TTGTTGAAATTGGGCGGCCA 61.403 50.000 29.27 29.27 0.00 5.36
3859 5156 1.369321 GTTGAAATTGGGCGGCCAA 59.631 52.632 41.05 41.05 0.00 4.52
3860 5157 0.670239 GTTGAAATTGGGCGGCCAAG 60.670 55.000 40.94 0.00 32.97 3.61
3861 5158 2.125552 GAAATTGGGCGGCCAAGC 60.126 61.111 40.94 29.87 32.97 4.01
3862 5159 2.921972 AAATTGGGCGGCCAAGCA 60.922 55.556 40.94 24.89 39.27 3.91
3863 5160 2.242797 GAAATTGGGCGGCCAAGCAT 62.243 55.000 40.94 30.55 39.27 3.79
3864 5161 2.242797 AAATTGGGCGGCCAAGCATC 62.243 55.000 40.94 10.80 39.27 3.91
3892 5189 3.635433 CCTTTGCTGGCATTCATCG 57.365 52.632 0.00 0.00 0.00 3.84
3893 5190 0.526954 CCTTTGCTGGCATTCATCGC 60.527 55.000 0.00 0.00 0.00 4.58
3894 5191 0.454600 CTTTGCTGGCATTCATCGCT 59.545 50.000 0.00 0.00 0.00 4.93
3895 5192 1.672363 CTTTGCTGGCATTCATCGCTA 59.328 47.619 0.00 0.00 0.00 4.26
3896 5193 1.302366 TTGCTGGCATTCATCGCTAG 58.698 50.000 0.00 0.00 40.63 3.42
3897 5194 0.533531 TGCTGGCATTCATCGCTAGG 60.534 55.000 0.00 0.00 38.32 3.02
3898 5195 1.233285 GCTGGCATTCATCGCTAGGG 61.233 60.000 0.00 0.00 38.32 3.53
3899 5196 1.227943 TGGCATTCATCGCTAGGGC 60.228 57.895 1.02 0.00 0.00 5.19
3900 5197 1.072159 GGCATTCATCGCTAGGGCT 59.928 57.895 1.02 0.00 36.09 5.19
3901 5198 1.233285 GGCATTCATCGCTAGGGCTG 61.233 60.000 4.36 4.36 36.09 4.85
3902 5199 1.849976 GCATTCATCGCTAGGGCTGC 61.850 60.000 5.80 0.00 36.09 5.25
3903 5200 0.533531 CATTCATCGCTAGGGCTGCA 60.534 55.000 5.80 0.00 36.09 4.41
3904 5201 0.181114 ATTCATCGCTAGGGCTGCAA 59.819 50.000 5.80 2.79 36.09 4.08
3905 5202 0.035534 TTCATCGCTAGGGCTGCAAA 60.036 50.000 5.80 0.00 36.09 3.68
3906 5203 0.744414 TCATCGCTAGGGCTGCAAAC 60.744 55.000 5.80 0.00 36.09 2.93
3907 5204 1.815421 ATCGCTAGGGCTGCAAACG 60.815 57.895 0.50 0.00 36.09 3.60
3908 5205 2.238847 ATCGCTAGGGCTGCAAACGA 62.239 55.000 0.50 3.48 36.09 3.85
3909 5206 2.456119 CGCTAGGGCTGCAAACGAG 61.456 63.158 0.50 0.00 36.09 4.18
3910 5207 1.376037 GCTAGGGCTGCAAACGAGT 60.376 57.895 0.50 0.00 35.22 4.18
3911 5208 1.362406 GCTAGGGCTGCAAACGAGTC 61.362 60.000 0.50 0.00 35.22 3.36
3912 5209 1.078759 CTAGGGCTGCAAACGAGTCG 61.079 60.000 11.85 11.85 0.00 4.18
3913 5210 1.529152 TAGGGCTGCAAACGAGTCGA 61.529 55.000 21.50 0.00 0.00 4.20
3914 5211 2.383527 GGGCTGCAAACGAGTCGAG 61.384 63.158 21.50 6.68 0.00 4.04
3915 5212 2.472049 GCTGCAAACGAGTCGAGC 59.528 61.111 21.50 19.17 0.00 5.03
3916 5213 2.024319 GCTGCAAACGAGTCGAGCT 61.024 57.895 21.50 0.00 0.00 4.09
3917 5214 1.950098 GCTGCAAACGAGTCGAGCTC 61.950 60.000 21.50 2.73 40.77 4.09
3931 5228 2.569134 GCTCGAGCGAGTTGGAGT 59.431 61.111 23.61 0.00 43.70 3.85
3932 5229 1.080434 GCTCGAGCGAGTTGGAGTT 60.080 57.895 23.61 0.00 43.70 3.01
3933 5230 1.347817 GCTCGAGCGAGTTGGAGTTG 61.348 60.000 23.61 0.00 43.70 3.16
3934 5231 0.734253 CTCGAGCGAGTTGGAGTTGG 60.734 60.000 11.50 0.00 37.47 3.77
3935 5232 1.006102 CGAGCGAGTTGGAGTTGGT 60.006 57.895 0.00 0.00 0.00 3.67
3936 5233 0.600255 CGAGCGAGTTGGAGTTGGTT 60.600 55.000 0.00 0.00 0.00 3.67
3937 5234 1.149148 GAGCGAGTTGGAGTTGGTTC 58.851 55.000 0.00 0.00 0.00 3.62
3938 5235 0.468226 AGCGAGTTGGAGTTGGTTCA 59.532 50.000 0.00 0.00 0.00 3.18
3939 5236 0.868406 GCGAGTTGGAGTTGGTTCAG 59.132 55.000 0.00 0.00 0.00 3.02
3940 5237 0.868406 CGAGTTGGAGTTGGTTCAGC 59.132 55.000 0.00 0.00 0.00 4.26
3941 5238 1.541233 CGAGTTGGAGTTGGTTCAGCT 60.541 52.381 0.00 0.00 0.00 4.24
3942 5239 2.147150 GAGTTGGAGTTGGTTCAGCTC 58.853 52.381 3.65 3.65 40.22 4.09
3943 5240 1.490490 AGTTGGAGTTGGTTCAGCTCA 59.510 47.619 12.44 0.00 42.19 4.26
3944 5241 2.092429 AGTTGGAGTTGGTTCAGCTCAA 60.092 45.455 12.44 0.20 42.19 3.02
3945 5242 1.967319 TGGAGTTGGTTCAGCTCAAC 58.033 50.000 12.44 7.71 42.19 3.18
3952 5249 5.227238 GTTGGTTCAGCTCAACTCATATG 57.773 43.478 0.00 0.00 39.85 1.78
3953 5250 4.824479 TGGTTCAGCTCAACTCATATGA 57.176 40.909 5.07 5.07 0.00 2.15
3954 5251 5.164620 TGGTTCAGCTCAACTCATATGAA 57.835 39.130 6.90 0.00 0.00 2.57
3955 5252 5.559770 TGGTTCAGCTCAACTCATATGAAA 58.440 37.500 6.90 0.00 0.00 2.69
3956 5253 6.003326 TGGTTCAGCTCAACTCATATGAAAA 58.997 36.000 6.90 0.00 0.00 2.29
3957 5254 6.660521 TGGTTCAGCTCAACTCATATGAAAAT 59.339 34.615 6.90 0.00 0.00 1.82
3958 5255 7.177216 TGGTTCAGCTCAACTCATATGAAAATT 59.823 33.333 6.90 0.00 0.00 1.82
3959 5256 7.699812 GGTTCAGCTCAACTCATATGAAAATTC 59.300 37.037 6.90 0.00 0.00 2.17
3960 5257 7.008440 TCAGCTCAACTCATATGAAAATTCG 57.992 36.000 6.90 0.00 0.00 3.34
3961 5258 6.818142 TCAGCTCAACTCATATGAAAATTCGA 59.182 34.615 6.90 0.00 0.00 3.71
3962 5259 7.010830 TCAGCTCAACTCATATGAAAATTCGAG 59.989 37.037 6.90 8.03 0.00 4.04
3963 5260 5.906285 GCTCAACTCATATGAAAATTCGAGC 59.094 40.000 6.90 13.24 34.84 5.03
3964 5261 6.036246 TCAACTCATATGAAAATTCGAGCG 57.964 37.500 6.90 0.00 0.00 5.03
3965 5262 5.810074 TCAACTCATATGAAAATTCGAGCGA 59.190 36.000 6.90 0.00 0.00 4.93
3966 5263 5.896922 ACTCATATGAAAATTCGAGCGAG 57.103 39.130 6.90 0.00 0.00 5.03
3967 5264 4.210120 ACTCATATGAAAATTCGAGCGAGC 59.790 41.667 6.90 0.00 0.00 5.03
3968 5265 4.371786 TCATATGAAAATTCGAGCGAGCT 58.628 39.130 1.98 0.00 0.00 4.09
3969 5266 4.445718 TCATATGAAAATTCGAGCGAGCTC 59.554 41.667 14.61 14.61 39.55 4.09
3970 5267 2.078849 TGAAAATTCGAGCGAGCTCA 57.921 45.000 22.81 6.73 42.86 4.26
3971 5268 2.412870 TGAAAATTCGAGCGAGCTCAA 58.587 42.857 22.81 16.09 42.86 3.02
3972 5269 2.805671 TGAAAATTCGAGCGAGCTCAAA 59.194 40.909 22.81 12.96 42.86 2.69
3973 5270 2.882742 AAATTCGAGCGAGCTCAAAC 57.117 45.000 22.81 2.13 42.86 2.93
3974 5271 2.086054 AATTCGAGCGAGCTCAAACT 57.914 45.000 22.81 7.61 42.86 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.281787 AGGGAGGGAGGGGACGAA 61.282 66.667 0.00 0.00 0.00 3.85
131 144 1.570501 CAAGGGATGAATTGGGGGAGA 59.429 52.381 0.00 0.00 0.00 3.71
139 157 1.496429 AGGGATCGCAAGGGATGAATT 59.504 47.619 12.83 0.00 38.47 2.17
144 162 2.150051 GGGAGGGATCGCAAGGGAT 61.150 63.158 12.83 0.00 38.47 3.85
235 253 5.048294 CCCGCAAAACACCTAGAAATTACTT 60.048 40.000 0.00 0.00 0.00 2.24
256 274 1.867919 ATTCGGCGAGATCTAGCCCG 61.868 60.000 33.16 27.55 46.76 6.13
283 301 2.480610 CCCGGCATTTCATCCACGG 61.481 63.158 0.00 0.00 40.89 4.94
302 320 1.136336 GTCAAGGAAGCGCTAAACACG 60.136 52.381 12.05 0.00 0.00 4.49
311 329 2.815647 GAGCGGGTCAAGGAAGCG 60.816 66.667 1.64 0.00 0.00 4.68
389 407 6.014327 ACCTACTACACCAAAACCTCGATTTA 60.014 38.462 0.00 0.00 0.00 1.40
402 420 7.234782 CCTAATATCCATCAACCTACTACACCA 59.765 40.741 0.00 0.00 0.00 4.17
439 457 2.303163 TACGCATGACTACCGCAATT 57.697 45.000 0.00 0.00 0.00 2.32
457 475 6.762333 GGATTTTACCGACCCTAGCTATTTA 58.238 40.000 0.00 0.00 0.00 1.40
487 505 2.119655 ACCGAGCGTAGTAGCAGGG 61.120 63.158 7.99 3.43 40.05 4.45
491 509 0.935366 GCATCACCGAGCGTAGTAGC 60.935 60.000 0.00 0.00 37.41 3.58
517 535 3.914312 ACATGGTAGAGTCAACTCAACG 58.086 45.455 12.43 0.00 45.21 4.10
569 587 2.887568 CAGCTAGAAGTGCCGCCG 60.888 66.667 0.00 0.00 0.00 6.46
575 593 2.287915 ACACGCAAAACAGCTAGAAGTG 59.712 45.455 0.00 0.00 0.00 3.16
677 695 2.504175 TCCTTGACCTAAATTCCTCCGG 59.496 50.000 0.00 0.00 0.00 5.14
679 697 4.684757 GCTCTCCTTGACCTAAATTCCTCC 60.685 50.000 0.00 0.00 0.00 4.30
726 744 8.700722 TCCCACAAAATAATGAAAATCGATTG 57.299 30.769 12.25 0.00 0.00 2.67
733 751 6.642707 ACGACTCCCACAAAATAATGAAAA 57.357 33.333 0.00 0.00 0.00 2.29
740 758 3.215151 TGCAAACGACTCCCACAAAATA 58.785 40.909 0.00 0.00 0.00 1.40
769 787 8.939201 TTCACAAAATTAACTTCATCAAAGCA 57.061 26.923 0.00 0.00 38.67 3.91
805 823 2.491298 TGACAGCAAAAACAAGTGCAGA 59.509 40.909 0.00 0.00 43.42 4.26
806 824 2.878580 TGACAGCAAAAACAAGTGCAG 58.121 42.857 0.00 0.00 43.42 4.41
813 831 6.198029 CGAACAACAATATGACAGCAAAAACA 59.802 34.615 0.00 0.00 0.00 2.83
821 839 8.177013 TCATTCAATCGAACAACAATATGACAG 58.823 33.333 0.00 0.00 32.81 3.51
837 877 3.063997 GGCAGTACCAAGTCATTCAATCG 59.936 47.826 0.00 0.00 38.86 3.34
851 891 3.515330 ATGTACGTTACAGGCAGTACC 57.485 47.619 0.00 0.00 42.77 3.34
862 902 7.095313 TGGAGCGTTTTTCATAAATGTACGTTA 60.095 33.333 0.00 0.00 0.00 3.18
890 930 5.627182 AGTGGAGCATCTCTGATAAATGT 57.373 39.130 0.00 0.00 33.73 2.71
904 944 7.065803 GCAGTTACATAGAAAAATAGTGGAGCA 59.934 37.037 0.00 0.00 0.00 4.26
953 993 9.167311 GCCAGAAACAGATATAAGAAGAAGAAA 57.833 33.333 0.00 0.00 0.00 2.52
956 996 8.498054 TTGCCAGAAACAGATATAAGAAGAAG 57.502 34.615 0.00 0.00 0.00 2.85
1095 1135 4.641094 ACACATTTGTTCCCGTTTAAGACA 59.359 37.500 0.00 0.00 28.43 3.41
1098 1138 5.176407 TGACACATTTGTTCCCGTTTAAG 57.824 39.130 0.00 0.00 35.47 1.85
1283 1323 7.231317 TCACAGAAAGAACTTTAAGCATCCAAT 59.769 33.333 0.00 0.00 32.11 3.16
1352 1392 5.528600 TCCAATCCTTTGAATCCAACCTA 57.471 39.130 0.00 0.00 34.60 3.08
1619 1659 3.435327 CGCAGGTCATAAGTGCAGTTTTA 59.565 43.478 12.95 0.00 37.01 1.52
1722 1762 7.885297 ACAGTCATGCACAACAATATTTAACT 58.115 30.769 0.00 0.00 0.00 2.24
1749 1789 8.955061 AAATCATCGAGTGAAAACTAAACATG 57.045 30.769 0.00 0.00 40.97 3.21
1750 1790 9.003658 AGAAATCATCGAGTGAAAACTAAACAT 57.996 29.630 0.00 0.00 40.97 2.71
1820 1860 3.975992 CGGCATTAGCTGTGAACAC 57.024 52.632 0.00 0.00 42.33 3.32
1901 1941 3.434739 GGGAGATCCAGCTTGTCATTGAT 60.435 47.826 0.47 0.00 37.91 2.57
2194 2237 5.311121 TCTTAACTAAACCCCATGGACAGAA 59.689 40.000 15.22 0.00 34.81 3.02
2223 2266 2.289694 ACTTCTGGAGGACGTTCAATGG 60.290 50.000 0.00 0.00 0.00 3.16
2235 2278 5.922544 CCAAATAAAGTGCAAACTTCTGGAG 59.077 40.000 0.00 0.00 0.00 3.86
2248 2291 6.978338 AGCATCTGCATATCCAAATAAAGTG 58.022 36.000 4.79 0.00 45.16 3.16
2339 2383 5.869753 ATTCTGAACTCATCAAACTTCCG 57.130 39.130 0.00 0.00 37.67 4.30
2344 2388 8.125448 GCCACTAATATTCTGAACTCATCAAAC 58.875 37.037 0.00 0.00 37.67 2.93
2371 2415 9.419297 CAAAAGACTACAGCTAAACATACAGTA 57.581 33.333 0.00 0.00 0.00 2.74
2376 2420 8.896320 TGAACAAAAGACTACAGCTAAACATA 57.104 30.769 0.00 0.00 0.00 2.29
2394 2438 5.652014 ACTGGTGTGAAGATCTTTGAACAAA 59.348 36.000 9.87 6.43 0.00 2.83
2523 2594 5.605488 TGGGTAGAAAGAAGAAGGTACTGTT 59.395 40.000 0.00 0.00 40.86 3.16
2530 2601 2.913617 ACCCTGGGTAGAAAGAAGAAGG 59.086 50.000 18.99 0.00 32.11 3.46
2657 2728 4.953667 TCATAGAATGCTTGTAGCTCCAG 58.046 43.478 0.00 0.00 42.97 3.86
2700 2771 1.135859 GTGCACTTTCATCTTCGGCTG 60.136 52.381 10.32 0.00 0.00 4.85
2703 2774 1.466167 CAGGTGCACTTTCATCTTCGG 59.534 52.381 17.98 0.00 0.00 4.30
2713 2784 2.162681 GGTGAAATAGCAGGTGCACTT 58.837 47.619 17.98 6.12 45.16 3.16
2761 2832 6.040878 GCTTAACGTGGAAAGCTTAGATAGA 58.959 40.000 18.27 0.00 43.77 1.98
2776 2847 2.123988 TTGCTTGGGCGCTTAACGTG 62.124 55.000 7.64 0.00 46.11 4.49
2777 2848 1.241315 ATTGCTTGGGCGCTTAACGT 61.241 50.000 7.64 0.00 46.11 3.99
2830 2901 1.012841 CAGAGATGCCGCCTTCTTTC 58.987 55.000 0.00 0.00 0.00 2.62
2882 2953 1.211457 AGAGATGCCGCCTTCTTTCAT 59.789 47.619 0.00 0.00 0.00 2.57
2908 2979 2.031120 CCACCTTCTTTTGGAGCAACA 58.969 47.619 0.00 0.00 34.46 3.33
2989 3060 0.041400 CGCAACATCGCTTTGTGTCA 60.041 50.000 0.00 0.00 31.17 3.58
3029 3100 6.454795 CCATAAACCATGTACAGCAAAAACT 58.545 36.000 0.33 0.00 32.21 2.66
3057 3128 4.291783 GAGATTCGATTTACCGACTGAGG 58.708 47.826 0.00 0.00 38.39 3.86
3061 3132 5.340439 AAAGGAGATTCGATTTACCGACT 57.660 39.130 0.00 0.00 38.39 4.18
3202 3274 2.568623 ACATTCCCTGACTGACCAAC 57.431 50.000 0.00 0.00 0.00 3.77
3241 3313 4.975794 AGGGGCTGTAGTACTCCAAATATT 59.024 41.667 0.00 0.00 0.00 1.28
3265 3337 6.530567 CATACGCGAACACATAAAGAAAAGA 58.469 36.000 15.93 0.00 0.00 2.52
3266 3338 5.225129 GCATACGCGAACACATAAAGAAAAG 59.775 40.000 15.93 0.00 0.00 2.27
3267 3339 5.083389 GCATACGCGAACACATAAAGAAAA 58.917 37.500 15.93 0.00 0.00 2.29
3299 3371 4.873259 AGCTAAAACCACAAAACGCAAATT 59.127 33.333 0.00 0.00 0.00 1.82
3306 3378 5.815222 ACATCCAAAGCTAAAACCACAAAAC 59.185 36.000 0.00 0.00 0.00 2.43
3321 3394 5.243730 ACAATGGAACCAAGTACATCCAAAG 59.756 40.000 0.00 1.53 44.58 2.77
3326 3399 5.335661 GGAACACAATGGAACCAAGTACATC 60.336 44.000 0.00 0.60 0.00 3.06
3365 3460 0.038892 GTGGGTGTGCATTGAGCTTG 60.039 55.000 0.00 0.00 45.94 4.01
3392 3487 2.351253 CGCTCTCCTGATTATGACTCCG 60.351 54.545 0.00 0.00 0.00 4.63
3393 3488 2.029470 CCGCTCTCCTGATTATGACTCC 60.029 54.545 0.00 0.00 0.00 3.85
3418 3513 5.350365 TGATTATGACTCCTGTTACAAACGC 59.650 40.000 0.00 0.00 0.00 4.84
3429 3524 4.078922 TCCACTCTCCTGATTATGACTCCT 60.079 45.833 0.00 0.00 0.00 3.69
3449 4741 0.538057 CTTTGCAAGAGGGCACTCCA 60.538 55.000 13.73 0.00 44.86 3.86
3482 4774 4.446385 TGTCTTCGTCTCAAAAATACACGG 59.554 41.667 0.00 0.00 0.00 4.94
3529 4824 7.254455 CGACCCTCATGAACAATGTAAATAGTC 60.254 40.741 0.00 0.00 37.56 2.59
3534 4829 3.438781 GCGACCCTCATGAACAATGTAAA 59.561 43.478 0.00 0.00 37.56 2.01
3542 4837 2.029838 ATCTTGCGACCCTCATGAAC 57.970 50.000 0.00 0.00 0.00 3.18
3543 4838 3.904800 TTATCTTGCGACCCTCATGAA 57.095 42.857 0.00 0.00 0.00 2.57
3545 4840 4.564372 CGATATTATCTTGCGACCCTCATG 59.436 45.833 2.36 0.00 0.00 3.07
3546 4841 4.462834 TCGATATTATCTTGCGACCCTCAT 59.537 41.667 2.36 0.00 0.00 2.90
3547 4842 3.824443 TCGATATTATCTTGCGACCCTCA 59.176 43.478 2.36 0.00 0.00 3.86
3548 4843 4.416620 CTCGATATTATCTTGCGACCCTC 58.583 47.826 2.36 0.00 0.00 4.30
3549 4844 3.193691 CCTCGATATTATCTTGCGACCCT 59.806 47.826 2.36 0.00 0.00 4.34
3550 4845 3.056749 ACCTCGATATTATCTTGCGACCC 60.057 47.826 2.36 0.00 0.00 4.46
3554 4851 4.982295 TGAACACCTCGATATTATCTTGCG 59.018 41.667 2.36 0.00 0.00 4.85
3568 4865 0.890683 CTTGGGCCAATGAACACCTC 59.109 55.000 21.25 0.00 0.00 3.85
3606 4903 2.861274 TGGCACATGAATGAACACTGA 58.139 42.857 0.00 0.00 0.00 3.41
3622 4919 0.657312 GACGCGAATGAATCATGGCA 59.343 50.000 15.93 0.00 0.00 4.92
3643 4940 2.648059 CCCCATTGGAGTTGCTCTAAG 58.352 52.381 3.62 0.00 34.66 2.18
3649 4946 1.728490 GATCGCCCCATTGGAGTTGC 61.728 60.000 3.62 0.53 35.07 4.17
3650 4947 1.103398 GGATCGCCCCATTGGAGTTG 61.103 60.000 3.62 0.00 35.07 3.16
3651 4948 1.227383 GGATCGCCCCATTGGAGTT 59.773 57.895 3.62 0.00 35.07 3.01
3652 4949 1.570857 TTGGATCGCCCCATTGGAGT 61.571 55.000 3.62 0.00 35.87 3.85
3653 4950 0.395586 TTTGGATCGCCCCATTGGAG 60.396 55.000 3.62 0.00 35.87 3.86
3654 4951 0.682855 GTTTGGATCGCCCCATTGGA 60.683 55.000 3.62 0.00 35.87 3.53
3655 4952 1.815866 GTTTGGATCGCCCCATTGG 59.184 57.895 0.00 0.00 35.87 3.16
3656 4953 1.433064 CGTTTGGATCGCCCCATTG 59.567 57.895 0.00 0.00 35.87 2.82
3657 4954 1.752694 CCGTTTGGATCGCCCCATT 60.753 57.895 0.00 0.00 37.49 3.16
3658 4955 2.124320 CCGTTTGGATCGCCCCAT 60.124 61.111 0.00 0.00 37.49 4.00
3659 4956 3.323286 TCCGTTTGGATCGCCCCA 61.323 61.111 0.00 0.00 40.17 4.96
3667 4964 1.293267 GAAATCGCCGTCCGTTTGGA 61.293 55.000 0.00 0.00 43.88 3.53
3668 4965 1.133869 GAAATCGCCGTCCGTTTGG 59.866 57.895 0.00 0.00 38.35 3.28
3669 4966 1.225637 CGAAATCGCCGTCCGTTTG 60.226 57.895 0.00 0.00 38.35 2.93
3670 4967 1.665599 ACGAAATCGCCGTCCGTTT 60.666 52.632 2.15 0.00 44.43 3.60
3671 4968 2.048877 ACGAAATCGCCGTCCGTT 60.049 55.556 2.15 0.00 44.43 4.44
3676 4973 0.665369 AAACGAGACGAAATCGCCGT 60.665 50.000 2.15 7.57 43.91 5.68
3677 4974 0.437295 AAAACGAGACGAAATCGCCG 59.563 50.000 2.15 6.97 43.91 6.46
3678 4975 2.589338 AAAAACGAGACGAAATCGCC 57.411 45.000 2.15 0.00 43.91 5.54
3694 4991 1.405661 GCCAACCCAAACGGACAAAAA 60.406 47.619 0.00 0.00 34.64 1.94
3695 4992 0.175989 GCCAACCCAAACGGACAAAA 59.824 50.000 0.00 0.00 34.64 2.44
3696 4993 1.677637 GGCCAACCCAAACGGACAAA 61.678 55.000 0.00 0.00 34.64 2.83
3697 4994 2.128507 GGCCAACCCAAACGGACAA 61.129 57.895 0.00 0.00 34.64 3.18
3698 4995 2.519780 GGCCAACCCAAACGGACA 60.520 61.111 0.00 0.00 34.64 4.02
3699 4996 3.666253 CGGCCAACCCAAACGGAC 61.666 66.667 2.24 0.00 34.64 4.79
3700 4997 4.192453 ACGGCCAACCCAAACGGA 62.192 61.111 2.24 0.00 34.64 4.69
3701 4998 3.666253 GACGGCCAACCCAAACGG 61.666 66.667 2.24 0.00 37.81 4.44
3702 4999 3.666253 GGACGGCCAACCCAAACG 61.666 66.667 0.00 0.00 0.00 3.60
3703 5000 3.666253 CGGACGGCCAACCCAAAC 61.666 66.667 8.76 0.00 0.00 2.93
3724 5021 0.175073 AATAGAACAGGACGGACGCC 59.825 55.000 0.00 0.00 0.00 5.68
3725 5022 2.005971 AAATAGAACAGGACGGACGC 57.994 50.000 0.00 0.00 0.00 5.19
3726 5023 6.507456 CGAATAAAAATAGAACAGGACGGACG 60.507 42.308 0.00 0.00 0.00 4.79
3727 5024 6.238022 CCGAATAAAAATAGAACAGGACGGAC 60.238 42.308 0.00 0.00 36.91 4.79
3728 5025 5.813672 CCGAATAAAAATAGAACAGGACGGA 59.186 40.000 0.00 0.00 36.91 4.69
3729 5026 5.503520 GCCGAATAAAAATAGAACAGGACGG 60.504 44.000 0.00 0.00 37.65 4.79
3730 5027 5.293569 AGCCGAATAAAAATAGAACAGGACG 59.706 40.000 0.00 0.00 0.00 4.79
3731 5028 6.679327 AGCCGAATAAAAATAGAACAGGAC 57.321 37.500 0.00 0.00 0.00 3.85
3732 5029 6.657541 ACAAGCCGAATAAAAATAGAACAGGA 59.342 34.615 0.00 0.00 0.00 3.86
3733 5030 6.852664 ACAAGCCGAATAAAAATAGAACAGG 58.147 36.000 0.00 0.00 0.00 4.00
3734 5031 9.834628 TTTACAAGCCGAATAAAAATAGAACAG 57.165 29.630 0.00 0.00 0.00 3.16
3748 5045 9.997482 GAATAAATCATAGTTTTACAAGCCGAA 57.003 29.630 0.00 0.00 0.00 4.30
3749 5046 8.332464 CGAATAAATCATAGTTTTACAAGCCGA 58.668 33.333 0.00 0.00 0.00 5.54
3750 5047 8.332464 TCGAATAAATCATAGTTTTACAAGCCG 58.668 33.333 0.00 0.00 0.00 5.52
3800 5097 8.731605 TGCATTGATGAATTTGCATTTAAACAT 58.268 25.926 0.00 0.00 39.98 2.71
3801 5098 8.095937 TGCATTGATGAATTTGCATTTAAACA 57.904 26.923 0.00 0.00 39.98 2.83
3802 5099 8.951954 TTGCATTGATGAATTTGCATTTAAAC 57.048 26.923 1.33 0.00 43.91 2.01
3803 5100 9.961265 TTTTGCATTGATGAATTTGCATTTAAA 57.039 22.222 1.33 0.00 43.91 1.52
3806 5103 8.920665 CAATTTTGCATTGATGAATTTGCATTT 58.079 25.926 1.33 0.00 43.91 2.32
3807 5104 8.300286 TCAATTTTGCATTGATGAATTTGCATT 58.700 25.926 1.33 0.00 43.91 3.56
3808 5105 7.821652 TCAATTTTGCATTGATGAATTTGCAT 58.178 26.923 1.33 0.00 43.91 3.96
3809 5106 7.203255 TCAATTTTGCATTGATGAATTTGCA 57.797 28.000 0.00 0.00 42.90 4.08
3810 5107 6.250527 GCTCAATTTTGCATTGATGAATTTGC 59.749 34.615 1.85 0.00 37.40 3.68
3811 5108 7.526608 AGCTCAATTTTGCATTGATGAATTTG 58.473 30.769 1.85 0.00 37.40 2.32
3812 5109 7.681939 AGCTCAATTTTGCATTGATGAATTT 57.318 28.000 1.85 0.00 37.40 1.82
3813 5110 8.958119 ATAGCTCAATTTTGCATTGATGAATT 57.042 26.923 1.85 0.00 37.40 2.17
3814 5111 8.958119 AATAGCTCAATTTTGCATTGATGAAT 57.042 26.923 1.85 0.00 37.40 2.57
3815 5112 8.661257 CAAATAGCTCAATTTTGCATTGATGAA 58.339 29.630 1.85 0.00 37.40 2.57
3816 5113 7.820386 ACAAATAGCTCAATTTTGCATTGATGA 59.180 29.630 1.85 0.00 37.40 2.92
3817 5114 7.970384 ACAAATAGCTCAATTTTGCATTGATG 58.030 30.769 1.85 0.15 37.40 3.07
3818 5115 8.447833 CAACAAATAGCTCAATTTTGCATTGAT 58.552 29.630 1.85 0.00 37.40 2.57
3819 5116 7.656542 TCAACAAATAGCTCAATTTTGCATTGA 59.343 29.630 0.00 1.52 34.47 2.57
3820 5117 7.798801 TCAACAAATAGCTCAATTTTGCATTG 58.201 30.769 0.00 0.00 34.47 2.82
3821 5118 7.966246 TCAACAAATAGCTCAATTTTGCATT 57.034 28.000 0.00 0.00 34.47 3.56
3822 5119 7.966246 TTCAACAAATAGCTCAATTTTGCAT 57.034 28.000 0.00 0.00 34.47 3.96
3823 5120 7.783090 TTTCAACAAATAGCTCAATTTTGCA 57.217 28.000 0.00 0.00 34.47 4.08
3824 5121 9.109533 CAATTTCAACAAATAGCTCAATTTTGC 57.890 29.630 0.00 0.00 34.47 3.68
3825 5122 9.601971 CCAATTTCAACAAATAGCTCAATTTTG 57.398 29.630 0.00 0.00 36.62 2.44
3826 5123 8.785946 CCCAATTTCAACAAATAGCTCAATTTT 58.214 29.630 0.00 0.00 31.51 1.82
3827 5124 7.094677 GCCCAATTTCAACAAATAGCTCAATTT 60.095 33.333 0.00 0.00 31.51 1.82
3828 5125 6.372381 GCCCAATTTCAACAAATAGCTCAATT 59.628 34.615 0.00 0.00 31.51 2.32
3829 5126 5.876460 GCCCAATTTCAACAAATAGCTCAAT 59.124 36.000 0.00 0.00 31.51 2.57
3830 5127 5.237048 GCCCAATTTCAACAAATAGCTCAA 58.763 37.500 0.00 0.00 31.51 3.02
3831 5128 4.617995 CGCCCAATTTCAACAAATAGCTCA 60.618 41.667 0.00 0.00 31.51 4.26
3832 5129 3.859386 CGCCCAATTTCAACAAATAGCTC 59.141 43.478 0.00 0.00 31.51 4.09
3833 5130 3.368323 CCGCCCAATTTCAACAAATAGCT 60.368 43.478 0.00 0.00 31.51 3.32
3834 5131 2.929398 CCGCCCAATTTCAACAAATAGC 59.071 45.455 0.00 0.00 31.51 2.97
3835 5132 2.929398 GCCGCCCAATTTCAACAAATAG 59.071 45.455 0.00 0.00 31.51 1.73
3836 5133 2.354203 GGCCGCCCAATTTCAACAAATA 60.354 45.455 0.00 0.00 31.51 1.40
3837 5134 1.610363 GGCCGCCCAATTTCAACAAAT 60.610 47.619 0.00 0.00 33.27 2.32
3838 5135 0.250081 GGCCGCCCAATTTCAACAAA 60.250 50.000 0.00 0.00 0.00 2.83
3839 5136 1.369321 GGCCGCCCAATTTCAACAA 59.631 52.632 0.00 0.00 0.00 2.83
3840 5137 1.402896 TTGGCCGCCCAATTTCAACA 61.403 50.000 7.03 0.00 46.01 3.33
3841 5138 1.369321 TTGGCCGCCCAATTTCAAC 59.631 52.632 7.03 0.00 46.01 3.18
3842 5139 3.876873 TTGGCCGCCCAATTTCAA 58.123 50.000 7.03 0.00 46.01 2.69
3854 5151 4.802051 TCGCAGGGATGCTTGGCC 62.802 66.667 0.00 0.00 0.00 5.36
3855 5152 2.751436 TTCGCAGGGATGCTTGGC 60.751 61.111 0.00 0.00 0.00 4.52
3856 5153 2.768492 GCTTCGCAGGGATGCTTGG 61.768 63.158 15.81 0.00 41.34 3.61
3857 5154 2.768492 GGCTTCGCAGGGATGCTTG 61.768 63.158 20.55 0.00 43.41 4.01
3858 5155 2.439156 GGCTTCGCAGGGATGCTT 60.439 61.111 20.55 0.00 43.41 3.91
3859 5156 2.490270 AAAGGCTTCGCAGGGATGCT 62.490 55.000 20.55 7.94 43.41 3.79
3860 5157 2.048603 AAAGGCTTCGCAGGGATGC 61.049 57.895 15.00 15.00 43.22 3.91
3861 5158 1.805254 CAAAGGCTTCGCAGGGATG 59.195 57.895 0.00 0.00 0.00 3.51
3862 5159 2.048603 GCAAAGGCTTCGCAGGGAT 61.049 57.895 5.05 0.00 36.96 3.85
3863 5160 2.672996 GCAAAGGCTTCGCAGGGA 60.673 61.111 5.05 0.00 36.96 4.20
3874 5171 0.526954 GCGATGAATGCCAGCAAAGG 60.527 55.000 0.00 0.00 0.00 3.11
3875 5172 0.454600 AGCGATGAATGCCAGCAAAG 59.545 50.000 0.00 0.00 0.00 2.77
3876 5173 1.672363 CTAGCGATGAATGCCAGCAAA 59.328 47.619 0.00 0.00 0.00 3.68
3877 5174 1.302366 CTAGCGATGAATGCCAGCAA 58.698 50.000 0.00 0.00 0.00 3.91
3878 5175 0.533531 CCTAGCGATGAATGCCAGCA 60.534 55.000 0.00 0.00 0.00 4.41
3879 5176 1.233285 CCCTAGCGATGAATGCCAGC 61.233 60.000 0.00 0.00 0.00 4.85
3880 5177 1.233285 GCCCTAGCGATGAATGCCAG 61.233 60.000 0.00 0.00 0.00 4.85
3881 5178 1.227943 GCCCTAGCGATGAATGCCA 60.228 57.895 0.00 0.00 0.00 4.92
3882 5179 1.072159 AGCCCTAGCGATGAATGCC 59.928 57.895 0.00 0.00 46.67 4.40
3883 5180 1.849976 GCAGCCCTAGCGATGAATGC 61.850 60.000 0.00 0.00 46.67 3.56
3884 5181 0.533531 TGCAGCCCTAGCGATGAATG 60.534 55.000 0.00 0.00 46.67 2.67
3885 5182 0.181114 TTGCAGCCCTAGCGATGAAT 59.819 50.000 0.00 0.00 46.67 2.57
3886 5183 0.035534 TTTGCAGCCCTAGCGATGAA 60.036 50.000 0.00 0.00 46.67 2.57
3887 5184 0.744414 GTTTGCAGCCCTAGCGATGA 60.744 55.000 0.00 0.00 46.67 2.92
3888 5185 1.723870 GTTTGCAGCCCTAGCGATG 59.276 57.895 0.00 0.00 46.67 3.84
3889 5186 1.815421 CGTTTGCAGCCCTAGCGAT 60.815 57.895 0.00 0.00 46.67 4.58
3890 5187 2.434185 CGTTTGCAGCCCTAGCGA 60.434 61.111 0.00 0.00 46.67 4.93
3891 5188 2.434185 TCGTTTGCAGCCCTAGCG 60.434 61.111 0.00 0.00 46.67 4.26
3892 5189 1.362406 GACTCGTTTGCAGCCCTAGC 61.362 60.000 0.00 0.00 40.32 3.42
3893 5190 1.078759 CGACTCGTTTGCAGCCCTAG 61.079 60.000 0.00 0.00 0.00 3.02
3894 5191 1.080093 CGACTCGTTTGCAGCCCTA 60.080 57.895 0.00 0.00 0.00 3.53
3895 5192 2.357517 CGACTCGTTTGCAGCCCT 60.358 61.111 0.00 0.00 0.00 5.19
3896 5193 2.357034 TCGACTCGTTTGCAGCCC 60.357 61.111 0.00 0.00 0.00 5.19
3897 5194 3.016474 GCTCGACTCGTTTGCAGCC 62.016 63.158 0.00 0.00 0.00 4.85
3898 5195 1.950098 GAGCTCGACTCGTTTGCAGC 61.950 60.000 0.00 8.23 35.18 5.25
3899 5196 2.066000 GAGCTCGACTCGTTTGCAG 58.934 57.895 0.00 0.00 35.18 4.41
3900 5197 4.245054 GAGCTCGACTCGTTTGCA 57.755 55.556 0.00 0.00 35.18 4.08
3907 5204 1.973137 AACTCGCTCGAGCTCGACTC 61.973 60.000 33.84 25.05 45.54 3.36
3908 5205 2.036006 AACTCGCTCGAGCTCGACT 61.036 57.895 33.84 12.70 45.54 4.18
3909 5206 1.865622 CAACTCGCTCGAGCTCGAC 60.866 63.158 33.84 26.44 45.54 4.20
3910 5207 2.481009 CAACTCGCTCGAGCTCGA 59.519 61.111 34.65 34.65 45.54 4.04
3911 5208 2.578178 CCAACTCGCTCGAGCTCG 60.578 66.667 32.88 30.03 45.54 5.03
3912 5209 1.226547 CTCCAACTCGCTCGAGCTC 60.227 63.158 32.88 2.73 45.54 4.09
3913 5210 1.528292 AACTCCAACTCGCTCGAGCT 61.528 55.000 32.88 13.94 45.54 4.09
3914 5211 1.080434 AACTCCAACTCGCTCGAGC 60.080 57.895 27.64 27.64 45.54 5.03
3915 5212 0.734253 CCAACTCCAACTCGCTCGAG 60.734 60.000 16.71 16.71 46.91 4.04
3916 5213 1.289066 CCAACTCCAACTCGCTCGA 59.711 57.895 0.00 0.00 0.00 4.04
3917 5214 0.600255 AACCAACTCCAACTCGCTCG 60.600 55.000 0.00 0.00 0.00 5.03
3918 5215 1.149148 GAACCAACTCCAACTCGCTC 58.851 55.000 0.00 0.00 0.00 5.03
3919 5216 0.468226 TGAACCAACTCCAACTCGCT 59.532 50.000 0.00 0.00 0.00 4.93
3920 5217 0.868406 CTGAACCAACTCCAACTCGC 59.132 55.000 0.00 0.00 0.00 5.03
3921 5218 0.868406 GCTGAACCAACTCCAACTCG 59.132 55.000 0.00 0.00 0.00 4.18
3922 5219 2.147150 GAGCTGAACCAACTCCAACTC 58.853 52.381 0.00 0.00 0.00 3.01
3923 5220 1.490490 TGAGCTGAACCAACTCCAACT 59.510 47.619 0.00 0.00 0.00 3.16
3924 5221 1.967319 TGAGCTGAACCAACTCCAAC 58.033 50.000 0.00 0.00 0.00 3.77
3925 5222 2.297701 GTTGAGCTGAACCAACTCCAA 58.702 47.619 4.50 0.00 39.47 3.53
3926 5223 1.967319 GTTGAGCTGAACCAACTCCA 58.033 50.000 4.50 0.00 39.47 3.86
3930 5227 4.937620 TCATATGAGTTGAGCTGAACCAAC 59.062 41.667 12.75 9.96 42.02 3.77
3931 5228 5.164620 TCATATGAGTTGAGCTGAACCAA 57.835 39.130 12.75 1.48 0.00 3.67
3932 5229 4.824479 TCATATGAGTTGAGCTGAACCA 57.176 40.909 12.75 10.59 0.00 3.67
3933 5230 6.500684 TTTTCATATGAGTTGAGCTGAACC 57.499 37.500 12.75 5.12 0.00 3.62
3934 5231 7.427606 CGAATTTTCATATGAGTTGAGCTGAAC 59.572 37.037 8.12 8.12 0.00 3.18
3935 5232 7.334171 TCGAATTTTCATATGAGTTGAGCTGAA 59.666 33.333 5.39 0.00 0.00 3.02
3936 5233 6.818142 TCGAATTTTCATATGAGTTGAGCTGA 59.182 34.615 5.39 0.00 0.00 4.26
3937 5234 7.008440 TCGAATTTTCATATGAGTTGAGCTG 57.992 36.000 5.39 0.00 0.00 4.24
3938 5235 6.238320 GCTCGAATTTTCATATGAGTTGAGCT 60.238 38.462 25.08 0.00 40.43 4.09
3939 5236 5.906285 GCTCGAATTTTCATATGAGTTGAGC 59.094 40.000 21.72 21.72 37.41 4.26
3940 5237 6.019559 TCGCTCGAATTTTCATATGAGTTGAG 60.020 38.462 5.39 11.53 0.00 3.02
3941 5238 5.810074 TCGCTCGAATTTTCATATGAGTTGA 59.190 36.000 5.39 2.35 0.00 3.18
3942 5239 6.036246 TCGCTCGAATTTTCATATGAGTTG 57.964 37.500 5.39 0.00 0.00 3.16
3943 5240 5.277058 GCTCGCTCGAATTTTCATATGAGTT 60.277 40.000 5.39 2.94 0.00 3.01
3944 5241 4.210120 GCTCGCTCGAATTTTCATATGAGT 59.790 41.667 5.39 0.00 0.00 3.41
3945 5242 4.447054 AGCTCGCTCGAATTTTCATATGAG 59.553 41.667 5.39 0.00 0.00 2.90
3946 5243 4.371786 AGCTCGCTCGAATTTTCATATGA 58.628 39.130 0.00 0.00 0.00 2.15
3947 5244 4.209911 TGAGCTCGCTCGAATTTTCATATG 59.790 41.667 9.64 0.00 45.48 1.78
3948 5245 4.371786 TGAGCTCGCTCGAATTTTCATAT 58.628 39.130 9.64 0.00 45.48 1.78
3949 5246 3.780902 TGAGCTCGCTCGAATTTTCATA 58.219 40.909 9.64 0.00 45.48 2.15
3950 5247 2.621338 TGAGCTCGCTCGAATTTTCAT 58.379 42.857 9.64 0.00 45.48 2.57
3951 5248 2.078849 TGAGCTCGCTCGAATTTTCA 57.921 45.000 9.64 0.00 45.48 2.69
3952 5249 3.120511 AGTTTGAGCTCGCTCGAATTTTC 60.121 43.478 20.94 10.68 45.11 2.29
3953 5250 2.808543 AGTTTGAGCTCGCTCGAATTTT 59.191 40.909 20.94 10.02 45.11 1.82
3954 5251 2.417719 AGTTTGAGCTCGCTCGAATTT 58.582 42.857 20.94 12.01 45.11 1.82
3955 5252 2.086054 AGTTTGAGCTCGCTCGAATT 57.914 45.000 20.94 15.57 45.11 2.17
3956 5253 3.822607 AGTTTGAGCTCGCTCGAAT 57.177 47.368 20.94 10.11 45.11 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.