Multiple sequence alignment - TraesCS7A01G261200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G261200 chr7A 100.000 4461 0 0 1 4461 254904113 254899653 0.000000e+00 8239.0
1 TraesCS7A01G261200 chr7D 91.428 2858 164 44 847 3668 242776569 242779381 0.000000e+00 3845.0
2 TraesCS7A01G261200 chr7D 87.338 695 42 16 3785 4454 242779984 242780657 0.000000e+00 754.0
3 TraesCS7A01G261200 chr7D 83.412 211 25 7 2197 2402 404239183 404238978 2.120000e-43 187.0
4 TraesCS7A01G261200 chr7B 93.384 2101 107 19 1612 3701 218537435 218539514 0.000000e+00 3081.0
5 TraesCS7A01G261200 chr7B 93.298 746 45 4 847 1587 218536550 218537295 0.000000e+00 1096.0
6 TraesCS7A01G261200 chr7B 91.969 386 22 5 3817 4194 218545475 218545859 2.360000e-147 532.0
7 TraesCS7A01G261200 chr6D 90.366 2024 130 24 1181 3182 27735761 27733781 0.000000e+00 2597.0
8 TraesCS7A01G261200 chr6D 88.302 795 63 7 386 1161 27736528 27735745 0.000000e+00 926.0
9 TraesCS7A01G261200 chr6D 81.038 1002 147 32 2488 3461 13092446 13093432 0.000000e+00 758.0
10 TraesCS7A01G261200 chr6D 90.843 415 25 5 3218 3619 27733782 27733368 1.090000e-150 544.0
11 TraesCS7A01G261200 chr6D 83.761 234 32 5 2194 2425 13092094 13092323 2.700000e-52 217.0
12 TraesCS7A01G261200 chr6B 78.879 1463 216 56 2199 3602 23646322 23644894 0.000000e+00 904.0
13 TraesCS7A01G261200 chr6A 82.003 589 78 18 3033 3602 14370941 14371520 4.040000e-130 475.0
14 TraesCS7A01G261200 chr6A 78.887 701 107 28 2199 2877 14370145 14370826 1.910000e-118 436.0
15 TraesCS7A01G261200 chr6A 78.807 486 84 14 966 1439 14369211 14369689 4.330000e-80 309.0
16 TraesCS7A01G261200 chr4D 83.886 211 25 6 2197 2402 43407871 43408077 4.550000e-45 193.0
17 TraesCS7A01G261200 chr5D 83.412 211 26 6 2197 2402 108957630 108957424 2.120000e-43 187.0
18 TraesCS7A01G261200 chr1B 81.776 214 32 5 2194 2402 572150440 572150651 5.930000e-39 172.0
19 TraesCS7A01G261200 chr5B 85.393 89 9 4 3545 3631 433538407 433538493 6.150000e-14 89.8
20 TraesCS7A01G261200 chr1D 85.714 63 6 3 3584 3645 488957167 488957107 3.730000e-06 63.9
21 TraesCS7A01G261200 chr2D 83.607 61 8 2 3586 3645 65244609 65244550 6.230000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G261200 chr7A 254899653 254904113 4460 True 8239.000000 8239 100.0000 1 4461 1 chr7A.!!$R1 4460
1 TraesCS7A01G261200 chr7D 242776569 242780657 4088 False 2299.500000 3845 89.3830 847 4454 2 chr7D.!!$F1 3607
2 TraesCS7A01G261200 chr7B 218536550 218539514 2964 False 2088.500000 3081 93.3410 847 3701 2 chr7B.!!$F2 2854
3 TraesCS7A01G261200 chr6D 27733368 27736528 3160 True 1355.666667 2597 89.8370 386 3619 3 chr6D.!!$R1 3233
4 TraesCS7A01G261200 chr6D 13092094 13093432 1338 False 487.500000 758 82.3995 2194 3461 2 chr6D.!!$F1 1267
5 TraesCS7A01G261200 chr6B 23644894 23646322 1428 True 904.000000 904 78.8790 2199 3602 1 chr6B.!!$R1 1403
6 TraesCS7A01G261200 chr6A 14369211 14371520 2309 False 406.666667 475 79.8990 966 3602 3 chr6A.!!$F1 2636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.036732 AGATCACACAACGGCACCAT 59.963 50.000 0.00 0.00 0.00 3.55 F
232 233 0.036732 ATCACACAACGGCACCATCT 59.963 50.000 0.00 0.00 0.00 2.90 F
366 367 0.038159 AGCGAAACTCCGTCTCCAAG 60.038 55.000 0.00 0.00 0.00 3.61 F
376 377 0.041312 CGTCTCCAAGTTGTTTGCCG 60.041 55.000 1.45 0.00 35.37 5.69 F
750 768 0.108138 CCTCGACCAGTGGGATCAAC 60.108 60.000 15.21 0.00 38.05 3.18 F
767 785 1.132453 CAACTGTGATCTGCAGCATGG 59.868 52.381 9.47 2.36 37.47 3.66 F
2714 3050 1.168714 GGTTGGACCAAGCAGTCATC 58.831 55.000 27.58 5.21 40.92 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2188 2419 1.024271 GCTTTGCTCCACACAAGACA 58.976 50.000 0.00 0.0 0.00 3.41 R
2264 2495 8.731275 TGAAACACTGAATCAAGAAGAAAGTA 57.269 30.769 0.00 0.0 0.00 2.24 R
2471 2777 6.202762 TGGCTGCATCGAAAAATATAGTACTG 59.797 38.462 5.39 0.0 0.00 2.74 R
2486 2812 0.516877 TTCGTTTTCTGGCTGCATCG 59.483 50.000 0.50 0.0 0.00 3.84 R
2677 3013 2.334023 ACCTCCATCTGAGCCCTATTC 58.666 52.381 0.00 0.0 39.98 1.75 R
2805 3149 3.381272 TGAGGTCCAAAAGAAACTTGCAG 59.619 43.478 0.00 0.0 0.00 4.41 R
3936 4842 0.033504 ACATCACGCGTGAAAGGAGT 59.966 50.000 41.74 29.6 43.58 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.070581 CAGCAGAATGTAAAACTGGACG 57.929 45.455 0.00 0.00 39.31 4.79
22 23 3.074412 AGCAGAATGTAAAACTGGACGG 58.926 45.455 0.00 0.00 39.31 4.79
23 24 3.071479 GCAGAATGTAAAACTGGACGGA 58.929 45.455 0.00 0.00 39.31 4.69
24 25 3.500680 GCAGAATGTAAAACTGGACGGAA 59.499 43.478 0.00 0.00 39.31 4.30
25 26 4.023536 GCAGAATGTAAAACTGGACGGAAA 60.024 41.667 0.00 0.00 39.31 3.13
26 27 5.506649 GCAGAATGTAAAACTGGACGGAAAA 60.507 40.000 0.00 0.00 39.31 2.29
27 28 5.912955 CAGAATGTAAAACTGGACGGAAAAC 59.087 40.000 0.00 0.00 0.00 2.43
28 29 5.591067 AGAATGTAAAACTGGACGGAAAACA 59.409 36.000 0.00 0.00 0.00 2.83
29 30 5.838531 ATGTAAAACTGGACGGAAAACAA 57.161 34.783 0.00 0.00 0.00 2.83
30 31 5.238006 TGTAAAACTGGACGGAAAACAAG 57.762 39.130 0.00 0.00 0.00 3.16
31 32 3.793797 AAAACTGGACGGAAAACAAGG 57.206 42.857 0.00 0.00 0.00 3.61
32 33 2.430248 AACTGGACGGAAAACAAGGT 57.570 45.000 0.00 0.00 0.00 3.50
33 34 1.675552 ACTGGACGGAAAACAAGGTG 58.324 50.000 0.00 0.00 0.00 4.00
34 35 1.210967 ACTGGACGGAAAACAAGGTGA 59.789 47.619 0.00 0.00 0.00 4.02
35 36 2.294074 CTGGACGGAAAACAAGGTGAA 58.706 47.619 0.00 0.00 0.00 3.18
36 37 2.685897 CTGGACGGAAAACAAGGTGAAA 59.314 45.455 0.00 0.00 0.00 2.69
37 38 2.685897 TGGACGGAAAACAAGGTGAAAG 59.314 45.455 0.00 0.00 0.00 2.62
38 39 2.946990 GGACGGAAAACAAGGTGAAAGA 59.053 45.455 0.00 0.00 0.00 2.52
39 40 3.379057 GGACGGAAAACAAGGTGAAAGAA 59.621 43.478 0.00 0.00 0.00 2.52
40 41 4.142337 GGACGGAAAACAAGGTGAAAGAAA 60.142 41.667 0.00 0.00 0.00 2.52
41 42 5.394224 ACGGAAAACAAGGTGAAAGAAAA 57.606 34.783 0.00 0.00 0.00 2.29
42 43 5.165676 ACGGAAAACAAGGTGAAAGAAAAC 58.834 37.500 0.00 0.00 0.00 2.43
43 44 5.164954 CGGAAAACAAGGTGAAAGAAAACA 58.835 37.500 0.00 0.00 0.00 2.83
44 45 5.810074 CGGAAAACAAGGTGAAAGAAAACAT 59.190 36.000 0.00 0.00 0.00 2.71
45 46 6.312672 CGGAAAACAAGGTGAAAGAAAACATT 59.687 34.615 0.00 0.00 0.00 2.71
46 47 7.489757 CGGAAAACAAGGTGAAAGAAAACATTA 59.510 33.333 0.00 0.00 0.00 1.90
47 48 8.817100 GGAAAACAAGGTGAAAGAAAACATTAG 58.183 33.333 0.00 0.00 0.00 1.73
48 49 9.581099 GAAAACAAGGTGAAAGAAAACATTAGA 57.419 29.630 0.00 0.00 0.00 2.10
49 50 9.936759 AAAACAAGGTGAAAGAAAACATTAGAA 57.063 25.926 0.00 0.00 0.00 2.10
50 51 9.936759 AAACAAGGTGAAAGAAAACATTAGAAA 57.063 25.926 0.00 0.00 0.00 2.52
51 52 9.936759 AACAAGGTGAAAGAAAACATTAGAAAA 57.063 25.926 0.00 0.00 0.00 2.29
52 53 9.586435 ACAAGGTGAAAGAAAACATTAGAAAAG 57.414 29.630 0.00 0.00 0.00 2.27
53 54 9.586435 CAAGGTGAAAGAAAACATTAGAAAAGT 57.414 29.630 0.00 0.00 0.00 2.66
54 55 9.586435 AAGGTGAAAGAAAACATTAGAAAAGTG 57.414 29.630 0.00 0.00 0.00 3.16
55 56 8.966868 AGGTGAAAGAAAACATTAGAAAAGTGA 58.033 29.630 0.00 0.00 0.00 3.41
56 57 9.750125 GGTGAAAGAAAACATTAGAAAAGTGAT 57.250 29.630 0.00 0.00 0.00 3.06
65 66 8.593492 AACATTAGAAAAGTGATTGAAAAGGC 57.407 30.769 0.00 0.00 0.00 4.35
66 67 7.725251 ACATTAGAAAAGTGATTGAAAAGGCA 58.275 30.769 0.00 0.00 0.00 4.75
67 68 7.653311 ACATTAGAAAAGTGATTGAAAAGGCAC 59.347 33.333 0.00 0.00 35.90 5.01
68 69 5.596836 AGAAAAGTGATTGAAAAGGCACA 57.403 34.783 0.00 0.00 37.48 4.57
69 70 5.976458 AGAAAAGTGATTGAAAAGGCACAA 58.024 33.333 0.00 0.00 37.48 3.33
70 71 6.044682 AGAAAAGTGATTGAAAAGGCACAAG 58.955 36.000 0.00 0.00 37.48 3.16
71 72 5.596836 AAAGTGATTGAAAAGGCACAAGA 57.403 34.783 0.00 0.00 37.48 3.02
72 73 5.596836 AAGTGATTGAAAAGGCACAAGAA 57.403 34.783 0.00 0.00 37.48 2.52
73 74 4.936891 AGTGATTGAAAAGGCACAAGAAC 58.063 39.130 0.00 0.00 37.48 3.01
74 75 4.051237 GTGATTGAAAAGGCACAAGAACC 58.949 43.478 0.00 0.00 35.78 3.62
75 76 3.703556 TGATTGAAAAGGCACAAGAACCA 59.296 39.130 0.00 0.00 0.00 3.67
76 77 3.518634 TTGAAAAGGCACAAGAACCAC 57.481 42.857 0.00 0.00 0.00 4.16
77 78 1.754226 TGAAAAGGCACAAGAACCACC 59.246 47.619 0.00 0.00 0.00 4.61
78 79 1.754226 GAAAAGGCACAAGAACCACCA 59.246 47.619 0.00 0.00 0.00 4.17
79 80 1.402787 AAAGGCACAAGAACCACCAG 58.597 50.000 0.00 0.00 0.00 4.00
80 81 0.550914 AAGGCACAAGAACCACCAGA 59.449 50.000 0.00 0.00 0.00 3.86
81 82 0.550914 AGGCACAAGAACCACCAGAA 59.449 50.000 0.00 0.00 0.00 3.02
82 83 1.064017 AGGCACAAGAACCACCAGAAA 60.064 47.619 0.00 0.00 0.00 2.52
83 84 1.754226 GGCACAAGAACCACCAGAAAA 59.246 47.619 0.00 0.00 0.00 2.29
84 85 2.167487 GGCACAAGAACCACCAGAAAAA 59.833 45.455 0.00 0.00 0.00 1.94
106 107 3.947910 AAACCGTATTCAGAAGGTCGA 57.052 42.857 6.14 0.00 35.68 4.20
107 108 2.935481 ACCGTATTCAGAAGGTCGAC 57.065 50.000 7.13 7.13 29.76 4.20
108 109 1.131883 ACCGTATTCAGAAGGTCGACG 59.868 52.381 9.92 0.00 29.76 5.12
109 110 1.533338 CCGTATTCAGAAGGTCGACGG 60.533 57.143 9.92 0.00 41.96 4.79
110 111 1.533338 CGTATTCAGAAGGTCGACGGG 60.533 57.143 9.92 0.00 0.00 5.28
111 112 1.747355 GTATTCAGAAGGTCGACGGGA 59.253 52.381 9.92 0.00 0.00 5.14
112 113 1.263356 ATTCAGAAGGTCGACGGGAA 58.737 50.000 9.92 8.69 0.00 3.97
113 114 1.042229 TTCAGAAGGTCGACGGGAAA 58.958 50.000 9.92 0.00 0.00 3.13
114 115 1.042229 TCAGAAGGTCGACGGGAAAA 58.958 50.000 9.92 0.00 0.00 2.29
115 116 1.413445 TCAGAAGGTCGACGGGAAAAA 59.587 47.619 9.92 0.00 0.00 1.94
131 132 0.970640 AAAAACCACCCGTAATGGCC 59.029 50.000 0.00 0.00 41.31 5.36
132 133 1.245376 AAAACCACCCGTAATGGCCG 61.245 55.000 0.00 0.00 41.31 6.13
133 134 3.631952 AACCACCCGTAATGGCCGG 62.632 63.158 0.00 0.00 45.07 6.13
147 148 2.445845 CCGGCCCATGTCCTCCTA 60.446 66.667 0.00 0.00 0.00 2.94
148 149 2.808206 CCGGCCCATGTCCTCCTAC 61.808 68.421 0.00 0.00 0.00 3.18
149 150 1.762460 CGGCCCATGTCCTCCTACT 60.762 63.158 0.00 0.00 0.00 2.57
150 151 1.749334 CGGCCCATGTCCTCCTACTC 61.749 65.000 0.00 0.00 0.00 2.59
151 152 1.742768 GCCCATGTCCTCCTACTCG 59.257 63.158 0.00 0.00 0.00 4.18
152 153 0.755698 GCCCATGTCCTCCTACTCGA 60.756 60.000 0.00 0.00 0.00 4.04
153 154 2.002505 CCCATGTCCTCCTACTCGAT 57.997 55.000 0.00 0.00 0.00 3.59
154 155 2.320781 CCCATGTCCTCCTACTCGATT 58.679 52.381 0.00 0.00 0.00 3.34
155 156 2.700897 CCCATGTCCTCCTACTCGATTT 59.299 50.000 0.00 0.00 0.00 2.17
156 157 3.493350 CCCATGTCCTCCTACTCGATTTG 60.493 52.174 0.00 0.00 0.00 2.32
157 158 3.133003 CCATGTCCTCCTACTCGATTTGT 59.867 47.826 0.00 0.00 0.00 2.83
158 159 4.341235 CCATGTCCTCCTACTCGATTTGTA 59.659 45.833 0.00 0.00 0.00 2.41
159 160 4.978083 TGTCCTCCTACTCGATTTGTAC 57.022 45.455 0.00 0.00 0.00 2.90
160 161 3.376234 TGTCCTCCTACTCGATTTGTACG 59.624 47.826 0.00 0.00 0.00 3.67
161 162 2.357009 TCCTCCTACTCGATTTGTACGC 59.643 50.000 0.00 0.00 0.00 4.42
162 163 2.098607 CCTCCTACTCGATTTGTACGCA 59.901 50.000 0.00 0.00 0.00 5.24
163 164 3.106672 CTCCTACTCGATTTGTACGCAC 58.893 50.000 0.00 0.00 0.00 5.34
164 165 2.159338 TCCTACTCGATTTGTACGCACC 60.159 50.000 0.00 0.00 0.00 5.01
165 166 2.416296 CCTACTCGATTTGTACGCACCA 60.416 50.000 0.00 0.00 0.00 4.17
166 167 1.425412 ACTCGATTTGTACGCACCAC 58.575 50.000 0.00 0.00 0.00 4.16
167 168 1.269883 ACTCGATTTGTACGCACCACA 60.270 47.619 0.00 0.00 0.00 4.17
168 169 1.126113 CTCGATTTGTACGCACCACAC 59.874 52.381 0.00 0.00 0.00 3.82
169 170 1.144969 CGATTTGTACGCACCACACT 58.855 50.000 0.00 0.00 0.00 3.55
170 171 2.030096 TCGATTTGTACGCACCACACTA 60.030 45.455 0.00 0.00 0.00 2.74
171 172 2.091588 CGATTTGTACGCACCACACTAC 59.908 50.000 0.00 0.00 0.00 2.73
172 173 2.894763 TTTGTACGCACCACACTACT 57.105 45.000 0.00 0.00 0.00 2.57
173 174 2.143008 TTGTACGCACCACACTACTG 57.857 50.000 0.00 0.00 0.00 2.74
174 175 0.319211 TGTACGCACCACACTACTGC 60.319 55.000 0.00 0.00 0.00 4.40
177 178 3.862124 GCACCACACTACTGCGAG 58.138 61.111 0.00 0.00 0.00 5.03
178 179 1.738099 GCACCACACTACTGCGAGG 60.738 63.158 0.00 0.00 0.00 4.63
179 180 1.964448 CACCACACTACTGCGAGGA 59.036 57.895 0.00 0.00 0.00 3.71
180 181 0.317160 CACCACACTACTGCGAGGAA 59.683 55.000 0.00 0.00 0.00 3.36
181 182 1.066858 CACCACACTACTGCGAGGAAT 60.067 52.381 0.00 0.00 0.00 3.01
182 183 2.165641 CACCACACTACTGCGAGGAATA 59.834 50.000 0.00 0.00 0.00 1.75
183 184 2.427453 ACCACACTACTGCGAGGAATAG 59.573 50.000 0.00 0.00 0.00 1.73
184 185 2.223829 CCACACTACTGCGAGGAATAGG 60.224 54.545 0.00 0.00 0.00 2.57
185 186 2.688446 CACACTACTGCGAGGAATAGGA 59.312 50.000 0.00 0.00 0.00 2.94
186 187 3.319405 CACACTACTGCGAGGAATAGGAT 59.681 47.826 0.00 0.00 0.00 3.24
187 188 3.570550 ACACTACTGCGAGGAATAGGATC 59.429 47.826 0.00 0.00 0.00 3.36
188 189 3.823873 CACTACTGCGAGGAATAGGATCT 59.176 47.826 0.00 0.00 0.00 2.75
189 190 4.076394 ACTACTGCGAGGAATAGGATCTC 58.924 47.826 0.00 0.00 0.00 2.75
190 191 3.237268 ACTGCGAGGAATAGGATCTCT 57.763 47.619 0.00 0.00 0.00 3.10
191 192 3.571590 ACTGCGAGGAATAGGATCTCTT 58.428 45.455 0.00 0.00 0.00 2.85
192 193 3.964031 ACTGCGAGGAATAGGATCTCTTT 59.036 43.478 0.00 0.00 0.00 2.52
193 194 4.038642 ACTGCGAGGAATAGGATCTCTTTC 59.961 45.833 0.00 0.00 0.00 2.62
194 195 3.322254 TGCGAGGAATAGGATCTCTTTCC 59.678 47.826 11.02 11.02 38.31 3.13
195 196 3.306433 GCGAGGAATAGGATCTCTTTCCC 60.306 52.174 13.81 7.77 38.73 3.97
196 197 3.259625 CGAGGAATAGGATCTCTTTCCCC 59.740 52.174 13.81 5.49 38.73 4.81
197 198 4.235372 GAGGAATAGGATCTCTTTCCCCA 58.765 47.826 13.81 0.00 38.73 4.96
198 199 4.849129 AGGAATAGGATCTCTTTCCCCAT 58.151 43.478 13.81 0.00 38.73 4.00
199 200 4.849235 AGGAATAGGATCTCTTTCCCCATC 59.151 45.833 13.81 0.00 38.73 3.51
200 201 4.323104 GGAATAGGATCTCTTTCCCCATCG 60.323 50.000 8.87 0.00 36.35 3.84
201 202 2.478872 AGGATCTCTTTCCCCATCGA 57.521 50.000 0.00 0.00 36.35 3.59
202 203 2.043227 AGGATCTCTTTCCCCATCGAC 58.957 52.381 0.00 0.00 36.35 4.20
203 204 1.762957 GGATCTCTTTCCCCATCGACA 59.237 52.381 0.00 0.00 0.00 4.35
204 205 2.483889 GGATCTCTTTCCCCATCGACAC 60.484 54.545 0.00 0.00 0.00 3.67
205 206 0.902531 TCTCTTTCCCCATCGACACC 59.097 55.000 0.00 0.00 0.00 4.16
206 207 0.107654 CTCTTTCCCCATCGACACCC 60.108 60.000 0.00 0.00 0.00 4.61
207 208 0.546747 TCTTTCCCCATCGACACCCT 60.547 55.000 0.00 0.00 0.00 4.34
208 209 0.328258 CTTTCCCCATCGACACCCTT 59.672 55.000 0.00 0.00 0.00 3.95
209 210 0.326927 TTTCCCCATCGACACCCTTC 59.673 55.000 0.00 0.00 0.00 3.46
210 211 1.559065 TTCCCCATCGACACCCTTCC 61.559 60.000 0.00 0.00 0.00 3.46
211 212 2.297895 CCCCATCGACACCCTTCCA 61.298 63.158 0.00 0.00 0.00 3.53
212 213 1.221840 CCCATCGACACCCTTCCAG 59.778 63.158 0.00 0.00 0.00 3.86
213 214 1.264749 CCCATCGACACCCTTCCAGA 61.265 60.000 0.00 0.00 0.00 3.86
214 215 0.833287 CCATCGACACCCTTCCAGAT 59.167 55.000 0.00 0.00 0.00 2.90
215 216 1.202580 CCATCGACACCCTTCCAGATC 60.203 57.143 0.00 0.00 0.00 2.75
216 217 1.482182 CATCGACACCCTTCCAGATCA 59.518 52.381 0.00 0.00 0.00 2.92
217 218 0.895530 TCGACACCCTTCCAGATCAC 59.104 55.000 0.00 0.00 0.00 3.06
218 219 0.608130 CGACACCCTTCCAGATCACA 59.392 55.000 0.00 0.00 0.00 3.58
219 220 1.673033 CGACACCCTTCCAGATCACAC 60.673 57.143 0.00 0.00 0.00 3.82
220 221 1.347707 GACACCCTTCCAGATCACACA 59.652 52.381 0.00 0.00 0.00 3.72
221 222 1.774254 ACACCCTTCCAGATCACACAA 59.226 47.619 0.00 0.00 0.00 3.33
222 223 2.154462 CACCCTTCCAGATCACACAAC 58.846 52.381 0.00 0.00 0.00 3.32
223 224 1.270839 ACCCTTCCAGATCACACAACG 60.271 52.381 0.00 0.00 0.00 4.10
224 225 1.442769 CCTTCCAGATCACACAACGG 58.557 55.000 0.00 0.00 0.00 4.44
225 226 0.798776 CTTCCAGATCACACAACGGC 59.201 55.000 0.00 0.00 0.00 5.68
226 227 0.107643 TTCCAGATCACACAACGGCA 59.892 50.000 0.00 0.00 0.00 5.69
227 228 0.602638 TCCAGATCACACAACGGCAC 60.603 55.000 0.00 0.00 0.00 5.01
228 229 1.577328 CCAGATCACACAACGGCACC 61.577 60.000 0.00 0.00 0.00 5.01
229 230 0.884259 CAGATCACACAACGGCACCA 60.884 55.000 0.00 0.00 0.00 4.17
230 231 0.036732 AGATCACACAACGGCACCAT 59.963 50.000 0.00 0.00 0.00 3.55
231 232 0.447801 GATCACACAACGGCACCATC 59.552 55.000 0.00 0.00 0.00 3.51
232 233 0.036732 ATCACACAACGGCACCATCT 59.963 50.000 0.00 0.00 0.00 2.90
233 234 0.682292 TCACACAACGGCACCATCTA 59.318 50.000 0.00 0.00 0.00 1.98
234 235 1.078709 CACACAACGGCACCATCTAG 58.921 55.000 0.00 0.00 0.00 2.43
235 236 0.973632 ACACAACGGCACCATCTAGA 59.026 50.000 0.00 0.00 0.00 2.43
236 237 1.346395 ACACAACGGCACCATCTAGAA 59.654 47.619 0.00 0.00 0.00 2.10
237 238 2.224426 ACACAACGGCACCATCTAGAAA 60.224 45.455 0.00 0.00 0.00 2.52
238 239 2.811431 CACAACGGCACCATCTAGAAAA 59.189 45.455 0.00 0.00 0.00 2.29
239 240 3.252215 CACAACGGCACCATCTAGAAAAA 59.748 43.478 0.00 0.00 0.00 1.94
255 256 1.657556 AAAAATCACACACCGGCGG 59.342 52.632 27.06 27.06 0.00 6.13
256 257 1.801309 AAAAATCACACACCGGCGGG 61.801 55.000 31.78 21.03 40.11 6.13
284 285 3.844090 GCCGCCTCCTCTGTCCTC 61.844 72.222 0.00 0.00 0.00 3.71
285 286 2.043450 CCGCCTCCTCTGTCCTCT 60.043 66.667 0.00 0.00 0.00 3.69
286 287 1.684049 CCGCCTCCTCTGTCCTCTT 60.684 63.158 0.00 0.00 0.00 2.85
287 288 1.671901 CCGCCTCCTCTGTCCTCTTC 61.672 65.000 0.00 0.00 0.00 2.87
288 289 1.671901 CGCCTCCTCTGTCCTCTTCC 61.672 65.000 0.00 0.00 0.00 3.46
289 290 0.325203 GCCTCCTCTGTCCTCTTCCT 60.325 60.000 0.00 0.00 0.00 3.36
290 291 1.484038 CCTCCTCTGTCCTCTTCCTG 58.516 60.000 0.00 0.00 0.00 3.86
291 292 0.823460 CTCCTCTGTCCTCTTCCTGC 59.177 60.000 0.00 0.00 0.00 4.85
292 293 0.967887 TCCTCTGTCCTCTTCCTGCG 60.968 60.000 0.00 0.00 0.00 5.18
293 294 1.515020 CTCTGTCCTCTTCCTGCGG 59.485 63.158 0.00 0.00 0.00 5.69
294 295 2.125350 CTGTCCTCTTCCTGCGGC 60.125 66.667 0.00 0.00 0.00 6.53
295 296 2.604686 TGTCCTCTTCCTGCGGCT 60.605 61.111 0.00 0.00 0.00 5.52
296 297 2.177594 CTGTCCTCTTCCTGCGGCTT 62.178 60.000 0.00 0.00 0.00 4.35
297 298 1.448717 GTCCTCTTCCTGCGGCTTC 60.449 63.158 0.00 0.00 0.00 3.86
298 299 1.610673 TCCTCTTCCTGCGGCTTCT 60.611 57.895 0.00 0.00 0.00 2.85
299 300 1.153469 CCTCTTCCTGCGGCTTCTC 60.153 63.158 0.00 0.00 0.00 2.87
300 301 1.153469 CTCTTCCTGCGGCTTCTCC 60.153 63.158 0.00 0.00 0.00 3.71
301 302 1.610673 TCTTCCTGCGGCTTCTCCT 60.611 57.895 0.00 0.00 0.00 3.69
302 303 1.449246 CTTCCTGCGGCTTCTCCTG 60.449 63.158 0.00 0.00 0.00 3.86
303 304 2.177594 CTTCCTGCGGCTTCTCCTGT 62.178 60.000 0.00 0.00 0.00 4.00
304 305 1.768684 TTCCTGCGGCTTCTCCTGTT 61.769 55.000 0.00 0.00 0.00 3.16
305 306 2.037136 CCTGCGGCTTCTCCTGTTG 61.037 63.158 0.00 0.00 0.00 3.33
306 307 2.669569 TGCGGCTTCTCCTGTTGC 60.670 61.111 0.00 0.00 0.00 4.17
307 308 3.435186 GCGGCTTCTCCTGTTGCC 61.435 66.667 0.00 0.00 41.76 4.52
308 309 2.747855 CGGCTTCTCCTGTTGCCC 60.748 66.667 0.00 0.00 42.15 5.36
309 310 2.361737 GGCTTCTCCTGTTGCCCC 60.362 66.667 0.00 0.00 39.49 5.80
310 311 2.361737 GCTTCTCCTGTTGCCCCC 60.362 66.667 0.00 0.00 0.00 5.40
311 312 3.170362 CTTCTCCTGTTGCCCCCA 58.830 61.111 0.00 0.00 0.00 4.96
312 313 1.303643 CTTCTCCTGTTGCCCCCAC 60.304 63.158 0.00 0.00 0.00 4.61
313 314 2.771328 CTTCTCCTGTTGCCCCCACC 62.771 65.000 0.00 0.00 0.00 4.61
314 315 3.260100 CTCCTGTTGCCCCCACCT 61.260 66.667 0.00 0.00 0.00 4.00
315 316 3.256960 TCCTGTTGCCCCCACCTC 61.257 66.667 0.00 0.00 0.00 3.85
316 317 4.366684 CCTGTTGCCCCCACCTCC 62.367 72.222 0.00 0.00 0.00 4.30
317 318 4.366684 CTGTTGCCCCCACCTCCC 62.367 72.222 0.00 0.00 0.00 4.30
336 337 4.069232 CGGCGGCCTGACTCTTGA 62.069 66.667 18.34 0.00 0.00 3.02
337 338 2.435059 GGCGGCCTGACTCTTGAC 60.435 66.667 12.87 0.00 0.00 3.18
338 339 2.659610 GCGGCCTGACTCTTGACT 59.340 61.111 0.00 0.00 0.00 3.41
339 340 1.446966 GCGGCCTGACTCTTGACTC 60.447 63.158 0.00 0.00 0.00 3.36
340 341 1.153939 CGGCCTGACTCTTGACTCG 60.154 63.158 0.00 0.00 0.00 4.18
341 342 1.216710 GGCCTGACTCTTGACTCGG 59.783 63.158 0.00 0.00 0.00 4.63
342 343 1.446966 GCCTGACTCTTGACTCGGC 60.447 63.158 0.00 0.00 0.00 5.54
343 344 1.216710 CCTGACTCTTGACTCGGCC 59.783 63.158 0.00 0.00 0.00 6.13
344 345 1.536073 CCTGACTCTTGACTCGGCCA 61.536 60.000 2.24 0.00 0.00 5.36
345 346 0.108898 CTGACTCTTGACTCGGCCAG 60.109 60.000 2.24 1.58 0.00 4.85
346 347 0.827925 TGACTCTTGACTCGGCCAGT 60.828 55.000 2.24 5.43 38.45 4.00
347 348 1.174783 GACTCTTGACTCGGCCAGTA 58.825 55.000 2.24 0.00 34.41 2.74
348 349 1.133407 GACTCTTGACTCGGCCAGTAG 59.867 57.143 2.24 0.00 34.41 2.57
349 350 0.179124 CTCTTGACTCGGCCAGTAGC 60.179 60.000 2.24 0.00 42.60 3.58
350 351 1.517257 CTTGACTCGGCCAGTAGCG 60.517 63.158 2.24 0.00 45.17 4.26
351 352 1.934220 CTTGACTCGGCCAGTAGCGA 61.934 60.000 2.24 0.00 45.17 4.93
352 353 1.529152 TTGACTCGGCCAGTAGCGAA 61.529 55.000 2.24 0.00 45.17 4.70
353 354 1.214589 GACTCGGCCAGTAGCGAAA 59.785 57.895 2.24 0.00 45.17 3.46
354 355 1.077089 GACTCGGCCAGTAGCGAAAC 61.077 60.000 2.24 0.00 45.17 2.78
355 356 1.215647 CTCGGCCAGTAGCGAAACT 59.784 57.895 2.24 0.00 45.17 2.66
356 357 0.802607 CTCGGCCAGTAGCGAAACTC 60.803 60.000 2.24 0.00 45.17 3.01
357 358 1.810030 CGGCCAGTAGCGAAACTCC 60.810 63.158 2.24 0.00 45.17 3.85
358 359 1.810030 GGCCAGTAGCGAAACTCCG 60.810 63.158 0.00 0.00 45.17 4.63
359 360 1.080025 GCCAGTAGCGAAACTCCGT 60.080 57.895 0.00 0.00 0.00 4.69
360 361 1.077089 GCCAGTAGCGAAACTCCGTC 61.077 60.000 0.00 0.00 0.00 4.79
361 362 0.526662 CCAGTAGCGAAACTCCGTCT 59.473 55.000 0.00 0.00 0.00 4.18
362 363 1.467713 CCAGTAGCGAAACTCCGTCTC 60.468 57.143 0.00 0.00 0.00 3.36
363 364 0.810016 AGTAGCGAAACTCCGTCTCC 59.190 55.000 0.00 0.00 0.00 3.71
364 365 0.524862 GTAGCGAAACTCCGTCTCCA 59.475 55.000 0.00 0.00 0.00 3.86
365 366 1.068055 GTAGCGAAACTCCGTCTCCAA 60.068 52.381 0.00 0.00 0.00 3.53
366 367 0.038159 AGCGAAACTCCGTCTCCAAG 60.038 55.000 0.00 0.00 0.00 3.61
367 368 0.319641 GCGAAACTCCGTCTCCAAGT 60.320 55.000 0.00 0.00 0.00 3.16
368 369 1.872653 GCGAAACTCCGTCTCCAAGTT 60.873 52.381 0.00 0.00 34.81 2.66
369 370 1.792949 CGAAACTCCGTCTCCAAGTTG 59.207 52.381 0.00 0.00 33.68 3.16
370 371 2.802057 CGAAACTCCGTCTCCAAGTTGT 60.802 50.000 1.45 0.00 33.68 3.32
371 372 3.203716 GAAACTCCGTCTCCAAGTTGTT 58.796 45.455 1.45 0.00 33.68 2.83
372 373 3.277142 AACTCCGTCTCCAAGTTGTTT 57.723 42.857 1.45 0.00 32.22 2.83
373 374 2.561569 ACTCCGTCTCCAAGTTGTTTG 58.438 47.619 1.45 0.00 36.50 2.93
374 375 1.264288 CTCCGTCTCCAAGTTGTTTGC 59.736 52.381 1.45 0.00 35.37 3.68
375 376 0.310854 CCGTCTCCAAGTTGTTTGCC 59.689 55.000 1.45 0.00 35.37 4.52
376 377 0.041312 CGTCTCCAAGTTGTTTGCCG 60.041 55.000 1.45 0.00 35.37 5.69
377 378 1.021968 GTCTCCAAGTTGTTTGCCGT 58.978 50.000 1.45 0.00 35.37 5.68
378 379 2.215196 GTCTCCAAGTTGTTTGCCGTA 58.785 47.619 1.45 0.00 35.37 4.02
379 380 2.032290 GTCTCCAAGTTGTTTGCCGTAC 60.032 50.000 1.45 0.00 35.37 3.67
380 381 0.938713 TCCAAGTTGTTTGCCGTACG 59.061 50.000 8.69 8.69 35.37 3.67
381 382 0.658897 CCAAGTTGTTTGCCGTACGT 59.341 50.000 15.21 0.00 35.37 3.57
382 383 1.333435 CCAAGTTGTTTGCCGTACGTC 60.333 52.381 15.21 0.71 35.37 4.34
383 384 0.939419 AAGTTGTTTGCCGTACGTCC 59.061 50.000 15.21 5.37 0.00 4.79
384 385 0.179078 AGTTGTTTGCCGTACGTCCA 60.179 50.000 15.21 8.13 0.00 4.02
388 389 0.390735 GTTTGCCGTACGTCCATCCT 60.391 55.000 15.21 0.00 0.00 3.24
392 393 2.954868 CGTACGTCCATCCTGCGC 60.955 66.667 7.22 0.00 0.00 6.09
394 395 4.201679 TACGTCCATCCTGCGCCG 62.202 66.667 4.18 0.00 0.00 6.46
432 433 1.147153 CTCCCCGCTTCTTCCCATC 59.853 63.158 0.00 0.00 0.00 3.51
437 438 0.250234 CCGCTTCTTCCCATCAGACA 59.750 55.000 0.00 0.00 0.00 3.41
458 459 2.188161 GTCTCCTACGCCTCCTCCG 61.188 68.421 0.00 0.00 0.00 4.63
459 460 2.907917 CTCCTACGCCTCCTCCGG 60.908 72.222 0.00 0.00 0.00 5.14
494 495 6.982852 TCCATAGTGAGTATTAGCAGCTTAC 58.017 40.000 0.00 0.00 0.00 2.34
505 506 1.398595 GCAGCTTACTGTTGCGTTTG 58.601 50.000 0.00 0.00 46.30 2.93
508 509 3.434637 CAGCTTACTGTTGCGTTTGTTT 58.565 40.909 0.00 0.00 39.22 2.83
509 510 3.857093 CAGCTTACTGTTGCGTTTGTTTT 59.143 39.130 0.00 0.00 39.22 2.43
510 511 3.857093 AGCTTACTGTTGCGTTTGTTTTG 59.143 39.130 0.00 0.00 0.00 2.44
511 512 3.610677 GCTTACTGTTGCGTTTGTTTTGT 59.389 39.130 0.00 0.00 0.00 2.83
512 513 4.490160 GCTTACTGTTGCGTTTGTTTTGTG 60.490 41.667 0.00 0.00 0.00 3.33
513 514 2.333014 ACTGTTGCGTTTGTTTTGTGG 58.667 42.857 0.00 0.00 0.00 4.17
551 552 6.441099 CAAATTGGAATGCAAATTTGTTGC 57.559 33.333 19.03 12.04 43.75 4.17
552 553 4.769859 ATTGGAATGCAAATTTGTTGCC 57.230 36.364 19.03 14.77 44.32 4.52
562 563 4.905295 GCAAATTTGTTGCCGATTTCAAAG 59.095 37.500 19.03 0.00 39.38 2.77
564 565 6.292596 GCAAATTTGTTGCCGATTTCAAAGTA 60.293 34.615 19.03 0.00 39.38 2.24
567 568 7.961325 ATTTGTTGCCGATTTCAAAGTATTT 57.039 28.000 0.00 0.00 40.26 1.40
580 581 6.078202 TCAAAGTATTTTTCCACGATTGCA 57.922 33.333 0.00 0.00 35.03 4.08
637 638 4.516321 TGAATGTGAACATGACCTTGTCAG 59.484 41.667 0.00 0.00 46.04 3.51
639 640 1.537202 GTGAACATGACCTTGTCAGCC 59.463 52.381 0.00 0.00 46.04 4.85
702 703 9.936759 GATAAATTCAGAAATAGTAGAGGAGGG 57.063 37.037 0.00 0.00 0.00 4.30
703 704 7.996758 AAATTCAGAAATAGTAGAGGAGGGA 57.003 36.000 0.00 0.00 0.00 4.20
704 705 7.996758 AATTCAGAAATAGTAGAGGAGGGAA 57.003 36.000 0.00 0.00 0.00 3.97
707 708 7.996758 TCAGAAATAGTAGAGGAGGGAATTT 57.003 36.000 0.00 0.00 0.00 1.82
711 712 2.493091 AGTAGAGGAGGGAATTTGGGG 58.507 52.381 0.00 0.00 0.00 4.96
721 722 3.401342 AGGGAATTTGGGGAACAAGTAGT 59.599 43.478 0.00 0.00 40.82 2.73
750 768 0.108138 CCTCGACCAGTGGGATCAAC 60.108 60.000 15.21 0.00 38.05 3.18
754 772 1.813513 GACCAGTGGGATCAACTGTG 58.186 55.000 15.21 15.57 38.05 3.66
755 773 1.347707 GACCAGTGGGATCAACTGTGA 59.652 52.381 15.21 0.00 36.37 3.58
767 785 1.132453 CAACTGTGATCTGCAGCATGG 59.868 52.381 9.47 2.36 37.47 3.66
775 793 3.332493 CTGCAGCATGGCAACGGTC 62.332 63.158 0.00 0.00 44.40 4.79
782 800 1.378514 ATGGCAACGGTCCATCCAC 60.379 57.895 0.00 0.00 40.08 4.02
795 813 3.791640 TCCACGTGCTGGATCAGT 58.208 55.556 10.91 0.00 44.99 3.41
798 816 1.204704 TCCACGTGCTGGATCAGTAAG 59.795 52.381 10.91 0.00 44.99 2.34
813 831 7.712639 TGGATCAGTAAGTTCTCAGATTATTGC 59.287 37.037 0.00 0.00 0.00 3.56
822 840 7.669427 AGTTCTCAGATTATTGCTGATAGAGG 58.331 38.462 0.00 0.00 41.20 3.69
823 841 6.035368 TCTCAGATTATTGCTGATAGAGGC 57.965 41.667 0.00 0.00 41.20 4.70
830 848 3.533606 TTGCTGATAGAGGCTGAACTC 57.466 47.619 0.00 0.00 37.77 3.01
845 863 5.010282 GCTGAACTCTCTTTCCCCAAAATA 58.990 41.667 0.00 0.00 0.00 1.40
854 872 6.553100 TCTCTTTCCCCAAAATATGTTTGTGT 59.447 34.615 0.00 0.00 0.00 3.72
864 882 7.869937 CCAAAATATGTTTGTGTCACCATTACA 59.130 33.333 0.00 0.25 0.00 2.41
912 930 5.638657 GTCTGATTGCTGATATTAGGAGCAG 59.361 44.000 11.78 11.78 43.36 4.24
992 1010 4.046286 TGAAATGGTCCAGCAGGTATTT 57.954 40.909 0.00 1.71 35.89 1.40
995 1013 2.489938 TGGTCCAGCAGGTATTTGTC 57.510 50.000 0.00 0.00 35.89 3.18
1148 1171 6.371548 TCTTAATTTCTGTTCAACATCCGAGG 59.628 38.462 0.00 0.00 0.00 4.63
1150 1173 3.319137 TTCTGTTCAACATCCGAGGAG 57.681 47.619 0.00 0.00 0.00 3.69
1151 1174 2.525368 TCTGTTCAACATCCGAGGAGA 58.475 47.619 0.00 0.00 0.00 3.71
1153 1176 1.967779 TGTTCAACATCCGAGGAGACA 59.032 47.619 0.00 0.00 0.00 3.41
1160 1183 2.093447 ACATCCGAGGAGACAATGTTCC 60.093 50.000 0.00 6.52 0.00 3.62
1165 1188 3.430374 CCGAGGAGACAATGTTCCGTAAT 60.430 47.826 8.28 0.00 38.54 1.89
1167 1190 5.345702 CGAGGAGACAATGTTCCGTAATTA 58.654 41.667 8.28 0.00 38.54 1.40
1169 1192 6.237755 CGAGGAGACAATGTTCCGTAATTAAC 60.238 42.308 8.28 0.00 38.54 2.01
1170 1193 6.708285 AGGAGACAATGTTCCGTAATTAACT 58.292 36.000 8.28 0.00 38.54 2.24
1172 1195 8.316214 AGGAGACAATGTTCCGTAATTAACTTA 58.684 33.333 8.28 0.00 38.54 2.24
1173 1196 8.938906 GGAGACAATGTTCCGTAATTAACTTAA 58.061 33.333 0.00 0.00 0.00 1.85
1176 1199 8.938047 ACAATGTTCCGTAATTAACTTAAACG 57.062 30.769 0.00 0.58 0.00 3.60
1285 1351 8.519526 TCATTCTGTGTTTGTTCAACTTTAACT 58.480 29.630 0.00 0.00 36.21 2.24
1306 1373 3.162666 TGGTGGTAGCTAAGGATATCCG 58.837 50.000 16.21 3.46 42.08 4.18
1310 1377 2.094130 GGTAGCTAAGGATATCCGCACC 60.094 54.545 16.21 16.97 42.08 5.01
1385 1453 2.354704 GCAGTACATAACCACAGCCAGA 60.355 50.000 0.00 0.00 0.00 3.86
1460 1554 6.645415 GGTATGGTATAGTGTTGTGTGCTATC 59.355 42.308 0.00 0.00 0.00 2.08
1481 1577 7.552687 GCTATCGGGGAATTAATATGTTGATGA 59.447 37.037 0.00 0.00 0.00 2.92
1482 1578 7.687941 ATCGGGGAATTAATATGTTGATGAC 57.312 36.000 0.00 0.00 0.00 3.06
1575 1672 4.689612 ACAGCCGGTATATGACAAGATT 57.310 40.909 1.90 0.00 0.00 2.40
1576 1673 5.036117 ACAGCCGGTATATGACAAGATTT 57.964 39.130 1.90 0.00 0.00 2.17
1658 1870 1.697432 TGTGTCCTTCCAAGGTACCAG 59.303 52.381 15.94 6.00 46.54 4.00
1660 1872 1.697432 TGTCCTTCCAAGGTACCAGTG 59.303 52.381 15.94 11.56 46.54 3.66
1668 1880 4.993028 TCCAAGGTACCAGTGCTTAAATT 58.007 39.130 15.94 0.00 0.00 1.82
1750 1962 7.865706 AATGGATTAGTGGTTGTTAGTCATC 57.134 36.000 0.00 0.00 0.00 2.92
1820 2032 7.217200 AGCATTTCAACTTCTCTGTACTGTTA 58.783 34.615 0.00 0.00 0.00 2.41
1860 2072 6.015519 CCAAAATTTGGTAGGAACTCATGACA 60.016 38.462 16.24 0.00 45.93 3.58
1873 2088 4.450976 ACTCATGACAAATGCCGCTATAA 58.549 39.130 0.00 0.00 0.00 0.98
1962 2177 2.887152 CAGTATAAAAGGGCCCATGCTC 59.113 50.000 27.56 7.92 38.71 4.26
2000 2215 4.333926 GGCACACAAATCTGGATACTCTTC 59.666 45.833 0.00 0.00 37.61 2.87
2013 2243 8.386264 TCTGGATACTCTTCTTCTTTTGGATTT 58.614 33.333 0.00 0.00 37.61 2.17
2074 2304 8.006298 TCCTTGCTTGACAAAAGAAATCTTAA 57.994 30.769 1.86 0.00 37.96 1.85
2264 2495 7.417456 CCCATGATCAGAACATGTTCATTCATT 60.417 37.037 33.92 19.91 42.97 2.57
2446 2752 4.328536 ACCACCGTTGCTCATACAATTTA 58.671 39.130 0.00 0.00 0.00 1.40
2447 2753 4.394920 ACCACCGTTGCTCATACAATTTAG 59.605 41.667 0.00 0.00 0.00 1.85
2448 2754 4.394920 CCACCGTTGCTCATACAATTTAGT 59.605 41.667 0.00 0.00 0.00 2.24
2449 2755 5.106317 CCACCGTTGCTCATACAATTTAGTT 60.106 40.000 0.00 0.00 0.00 2.24
2450 2756 6.378582 CACCGTTGCTCATACAATTTAGTTT 58.621 36.000 0.00 0.00 0.00 2.66
2451 2757 6.523201 CACCGTTGCTCATACAATTTAGTTTC 59.477 38.462 0.00 0.00 0.00 2.78
2452 2758 6.430000 ACCGTTGCTCATACAATTTAGTTTCT 59.570 34.615 0.00 0.00 0.00 2.52
2453 2759 7.604927 ACCGTTGCTCATACAATTTAGTTTCTA 59.395 33.333 0.00 0.00 0.00 2.10
2454 2760 8.116753 CCGTTGCTCATACAATTTAGTTTCTAG 58.883 37.037 0.00 0.00 0.00 2.43
2455 2761 8.869897 CGTTGCTCATACAATTTAGTTTCTAGA 58.130 33.333 0.00 0.00 0.00 2.43
2458 2764 8.830580 TGCTCATACAATTTAGTTTCTAGATGC 58.169 33.333 0.00 0.00 0.00 3.91
2459 2765 9.050601 GCTCATACAATTTAGTTTCTAGATGCT 57.949 33.333 0.00 0.00 0.00 3.79
2502 2828 2.704725 TTTCGATGCAGCCAGAAAAC 57.295 45.000 0.00 0.00 30.74 2.43
2526 2852 5.006165 CGAAAATCTGGTTGATGAGAGTAGC 59.994 44.000 0.00 0.00 35.21 3.58
2565 2897 3.222603 TGAAAGAGAAAAGGTTGGGAGC 58.777 45.455 0.00 0.00 0.00 4.70
2644 2980 9.968743 GTCCTTTTATATGTTGAGTTTCTTACG 57.031 33.333 0.00 0.00 0.00 3.18
2654 2990 7.264221 TGTTGAGTTTCTTACGGTAACAACTA 58.736 34.615 20.68 11.15 36.89 2.24
2667 3003 8.986477 ACGGTAACAACTATAACGAACTAATT 57.014 30.769 0.00 0.00 36.95 1.40
2677 3013 9.935682 ACTATAACGAACTAATTGATGCAATTG 57.064 29.630 13.90 0.00 42.91 2.32
2714 3050 1.168714 GGTTGGACCAAGCAGTCATC 58.831 55.000 27.58 5.21 40.92 2.92
2727 3069 4.322567 AGCAGTCATCAGAGGAAAGAAAC 58.677 43.478 0.00 0.00 0.00 2.78
2877 3232 2.750948 TCTACACGAGCAACCAGTTTC 58.249 47.619 0.00 0.00 0.00 2.78
2932 3287 2.223665 GCTGCTGTGAAAAGCTGAAAGT 60.224 45.455 7.19 0.00 42.84 2.66
2933 3288 3.625938 CTGCTGTGAAAAGCTGAAAGTC 58.374 45.455 0.00 0.00 42.84 3.01
3150 3517 5.586643 GGAGAGTAGCCTTTTAATGAACCAG 59.413 44.000 0.00 0.00 0.00 4.00
3175 3542 4.381612 CCGTGCAAGATACAGAGAAGGTAA 60.382 45.833 0.00 0.00 0.00 2.85
3191 3558 3.917329 GGTAACCTTTTCTGTTGCCTC 57.083 47.619 3.44 0.00 42.90 4.70
3211 3584 1.650153 CGGCATTGTTTCATCTTTGCG 59.350 47.619 0.00 0.00 0.00 4.85
3212 3585 1.391144 GGCATTGTTTCATCTTTGCGC 59.609 47.619 0.00 0.00 0.00 6.09
3213 3586 1.391144 GCATTGTTTCATCTTTGCGCC 59.609 47.619 4.18 0.00 0.00 6.53
3298 3677 1.194218 TGCAGATCCTCGATTCCACA 58.806 50.000 0.00 0.00 0.00 4.17
3325 3704 2.203266 GTGGAGCATAGCCTGGCC 60.203 66.667 16.57 0.00 0.00 5.36
3418 3797 5.569059 GTGGTTGCTCATCTTTTTAATGACG 59.431 40.000 0.00 0.00 0.00 4.35
3461 3840 2.294791 CTCCTCATACGGATCACCTGAC 59.705 54.545 0.00 0.00 31.43 3.51
3513 3911 7.136119 GCTAAGATAGTACTGCAGTCTTGTAG 58.864 42.308 25.56 15.00 42.11 2.74
3660 4078 1.150308 TGCTGCTGCCCACTGTTAA 59.850 52.632 13.47 0.00 38.71 2.01
3668 4086 3.244044 GCTGCCCACTGTTAATTTTGGAA 60.244 43.478 0.00 0.00 0.00 3.53
3687 4126 4.260170 GGAAGTTCATGCTCATCTTCTGT 58.740 43.478 5.01 0.00 36.02 3.41
3704 4143 7.496529 TCTTCTGTTGAAAATGTGAACCTAG 57.503 36.000 0.00 0.00 0.00 3.02
3711 4150 9.311916 TGTTGAAAATGTGAACCTAGAAATTTG 57.688 29.630 0.00 0.00 0.00 2.32
3712 4151 9.313118 GTTGAAAATGTGAACCTAGAAATTTGT 57.687 29.630 0.00 0.00 0.00 2.83
3713 4152 8.870160 TGAAAATGTGAACCTAGAAATTTGTG 57.130 30.769 0.00 0.00 0.00 3.33
3719 4558 1.083489 CCTAGAAATTTGTGCGGCGA 58.917 50.000 12.98 0.00 0.00 5.54
3733 4572 3.774702 GCGACGGCGAGTGAAACC 61.775 66.667 18.90 0.00 40.82 3.27
3736 4575 1.006571 GACGGCGAGTGAAACCTCA 60.007 57.895 16.62 0.00 37.80 3.86
3751 4590 2.148702 ACCTCAGGCTCCTAGTCCTAT 58.851 52.381 0.00 0.00 0.00 2.57
3752 4591 3.337606 ACCTCAGGCTCCTAGTCCTATA 58.662 50.000 0.00 0.00 0.00 1.31
3797 4703 1.301479 GCGTATTCATCCCGGTCCC 60.301 63.158 0.00 0.00 0.00 4.46
3832 4738 1.631071 TTGCCTGGTGAGTGGTGACA 61.631 55.000 0.00 0.00 38.70 3.58
3861 4767 1.413445 AGTCAGCTCATGATCTGCTCC 59.587 52.381 19.53 10.86 40.92 4.70
3872 4778 3.441290 CTGCTCCTGGCTTGCAGC 61.441 66.667 17.99 9.57 45.76 5.25
3878 4784 0.604578 TCCTGGCTTGCAGCAATTTC 59.395 50.000 8.67 2.07 44.75 2.17
3884 4790 2.257034 GCTTGCAGCAATTTCTGTAGC 58.743 47.619 8.67 14.57 41.89 3.58
3917 4823 2.693591 TGGCTGCTGTATCAGTACTACC 59.306 50.000 0.00 0.00 36.49 3.18
3932 4838 4.903649 AGTACTACCAGTTTACCACCTTGT 59.096 41.667 0.00 0.00 0.00 3.16
3933 4839 4.081322 ACTACCAGTTTACCACCTTGTG 57.919 45.455 0.00 0.00 0.00 3.33
3934 4840 1.687563 ACCAGTTTACCACCTTGTGC 58.312 50.000 0.00 0.00 31.34 4.57
3935 4841 1.214424 ACCAGTTTACCACCTTGTGCT 59.786 47.619 0.00 0.00 31.34 4.40
3936 4842 2.440253 ACCAGTTTACCACCTTGTGCTA 59.560 45.455 0.00 0.00 31.34 3.49
3937 4843 2.812011 CCAGTTTACCACCTTGTGCTAC 59.188 50.000 0.00 0.00 31.34 3.58
3938 4844 3.496160 CCAGTTTACCACCTTGTGCTACT 60.496 47.826 0.00 0.00 31.34 2.57
3939 4845 3.746492 CAGTTTACCACCTTGTGCTACTC 59.254 47.826 0.00 0.00 31.34 2.59
3940 4846 3.072211 GTTTACCACCTTGTGCTACTCC 58.928 50.000 0.00 0.00 31.34 3.85
3941 4847 2.320681 TACCACCTTGTGCTACTCCT 57.679 50.000 0.00 0.00 31.34 3.69
3942 4848 1.435256 ACCACCTTGTGCTACTCCTT 58.565 50.000 0.00 0.00 31.34 3.36
3943 4849 1.774856 ACCACCTTGTGCTACTCCTTT 59.225 47.619 0.00 0.00 31.34 3.11
3952 4858 0.388134 GCTACTCCTTTCACGCGTGA 60.388 55.000 36.40 36.40 37.91 4.35
3961 4867 3.124466 CCTTTCACGCGTGATGTTTGATA 59.876 43.478 39.38 21.26 39.64 2.15
3967 4873 3.932710 ACGCGTGATGTTTGATAGATTGT 59.067 39.130 12.93 0.00 0.00 2.71
3989 4899 2.272923 TAGCTGCCGCTAGTTGACA 58.727 52.632 5.65 0.00 46.79 3.58
3990 4900 0.173481 TAGCTGCCGCTAGTTGACAG 59.827 55.000 5.65 0.00 46.79 3.51
3991 4901 2.103042 GCTGCCGCTAGTTGACAGG 61.103 63.158 0.00 0.00 0.00 4.00
4030 4943 0.598680 GGCACGGGAGATTGAGATCG 60.599 60.000 0.00 0.00 37.37 3.69
4043 4956 3.726291 TGAGATCGCGATGGTTAATGA 57.274 42.857 29.09 0.00 0.00 2.57
4054 4967 2.276201 TGGTTAATGACTTGGCGATCG 58.724 47.619 11.69 11.69 0.00 3.69
4063 4976 3.060000 TGGCGATCGGACGTCACT 61.060 61.111 18.91 0.07 42.82 3.41
4070 4983 2.478031 CGATCGGACGTCACTTCATTCT 60.478 50.000 18.91 0.00 0.00 2.40
4073 4986 4.713824 TCGGACGTCACTTCATTCTTAT 57.286 40.909 18.91 0.00 0.00 1.73
4082 4998 6.348458 CGTCACTTCATTCTTATTGAGCCAAA 60.348 38.462 0.00 0.00 0.00 3.28
4126 5042 1.066303 CCCACTACGATCTCAGCTGTC 59.934 57.143 14.67 2.92 0.00 3.51
4168 5085 3.900862 TGGCAAAGGGCAGCAGGA 61.901 61.111 0.00 0.00 45.76 3.86
4169 5086 3.873679 TGGCAAAGGGCAGCAGGAG 62.874 63.158 0.00 0.00 45.76 3.69
4170 5087 2.034687 GCAAAGGGCAGCAGGAGA 59.965 61.111 0.00 0.00 43.97 3.71
4176 5093 4.527583 GGCAGCAGGAGAGCCTCG 62.528 72.222 0.00 0.00 44.80 4.63
4260 5190 0.975040 CCCAGAGACAGGGGTGAGAG 60.975 65.000 0.00 0.00 42.90 3.20
4262 5192 1.473258 CAGAGACAGGGGTGAGAGAG 58.527 60.000 0.00 0.00 0.00 3.20
4311 5241 7.330946 GTCCAATTTCCATGCATATCATCAATG 59.669 37.037 0.00 0.00 31.79 2.82
4335 5265 4.222124 AGCTCGTTTCTGAATACCCAAT 57.778 40.909 0.00 0.00 0.00 3.16
4344 5274 4.464008 TCTGAATACCCAATGCAATCCTC 58.536 43.478 0.00 0.00 0.00 3.71
4354 5284 0.841961 TGCAATCCTCATAGCCAGCT 59.158 50.000 0.00 0.00 0.00 4.24
4374 5304 3.726517 CCACGCCGGACAAGCAAG 61.727 66.667 5.05 0.00 36.56 4.01
4381 5311 0.041312 CCGGACAAGCAAGTGAAACG 60.041 55.000 0.00 0.00 45.86 3.60
4383 5313 1.070577 CGGACAAGCAAGTGAAACGAG 60.071 52.381 0.00 0.00 45.86 4.18
4410 5340 4.448537 CCTAAATGGTCGATGCCAAAAA 57.551 40.909 0.00 0.00 42.48 1.94
4411 5341 5.009854 CCTAAATGGTCGATGCCAAAAAT 57.990 39.130 0.00 0.00 42.48 1.82
4412 5342 5.418676 CCTAAATGGTCGATGCCAAAAATT 58.581 37.500 0.00 0.00 42.48 1.82
4438 5368 5.120519 ACTGAAAACTTGTGTGCATTTGTTG 59.879 36.000 0.00 0.00 0.00 3.33
4454 5384 6.648502 CATTTGTTGTTGTGGCTATTTTGAC 58.351 36.000 0.00 0.00 0.00 3.18
4455 5385 4.314740 TGTTGTTGTGGCTATTTTGACC 57.685 40.909 0.00 0.00 0.00 4.02
4456 5386 3.701542 TGTTGTTGTGGCTATTTTGACCA 59.298 39.130 0.00 0.00 0.00 4.02
4457 5387 4.160439 TGTTGTTGTGGCTATTTTGACCAA 59.840 37.500 0.00 0.00 34.63 3.67
4458 5388 4.314740 TGTTGTGGCTATTTTGACCAAC 57.685 40.909 0.00 0.00 34.63 3.77
4459 5389 3.701542 TGTTGTGGCTATTTTGACCAACA 59.298 39.130 0.00 0.00 35.42 3.33
4460 5390 4.048504 GTTGTGGCTATTTTGACCAACAC 58.951 43.478 0.00 0.00 34.63 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.120199 CCGTCCAGTTTTACATTCTGCTG 60.120 47.826 0.00 0.00 0.00 4.41
1 2 3.074412 CCGTCCAGTTTTACATTCTGCT 58.926 45.455 0.00 0.00 0.00 4.24
2 3 3.071479 TCCGTCCAGTTTTACATTCTGC 58.929 45.455 0.00 0.00 0.00 4.26
3 4 5.682943 TTTCCGTCCAGTTTTACATTCTG 57.317 39.130 0.00 0.00 0.00 3.02
4 5 5.591067 TGTTTTCCGTCCAGTTTTACATTCT 59.409 36.000 0.00 0.00 0.00 2.40
5 6 5.823353 TGTTTTCCGTCCAGTTTTACATTC 58.177 37.500 0.00 0.00 0.00 2.67
6 7 5.838531 TGTTTTCCGTCCAGTTTTACATT 57.161 34.783 0.00 0.00 0.00 2.71
7 8 5.221165 CCTTGTTTTCCGTCCAGTTTTACAT 60.221 40.000 0.00 0.00 0.00 2.29
8 9 4.096682 CCTTGTTTTCCGTCCAGTTTTACA 59.903 41.667 0.00 0.00 0.00 2.41
9 10 4.096833 ACCTTGTTTTCCGTCCAGTTTTAC 59.903 41.667 0.00 0.00 0.00 2.01
10 11 4.096682 CACCTTGTTTTCCGTCCAGTTTTA 59.903 41.667 0.00 0.00 0.00 1.52
11 12 3.093814 ACCTTGTTTTCCGTCCAGTTTT 58.906 40.909 0.00 0.00 0.00 2.43
12 13 2.425668 CACCTTGTTTTCCGTCCAGTTT 59.574 45.455 0.00 0.00 0.00 2.66
13 14 2.021457 CACCTTGTTTTCCGTCCAGTT 58.979 47.619 0.00 0.00 0.00 3.16
14 15 1.210967 TCACCTTGTTTTCCGTCCAGT 59.789 47.619 0.00 0.00 0.00 4.00
15 16 1.961793 TCACCTTGTTTTCCGTCCAG 58.038 50.000 0.00 0.00 0.00 3.86
16 17 2.421751 TTCACCTTGTTTTCCGTCCA 57.578 45.000 0.00 0.00 0.00 4.02
17 18 2.946990 TCTTTCACCTTGTTTTCCGTCC 59.053 45.455 0.00 0.00 0.00 4.79
18 19 4.625972 TTCTTTCACCTTGTTTTCCGTC 57.374 40.909 0.00 0.00 0.00 4.79
19 20 5.165676 GTTTTCTTTCACCTTGTTTTCCGT 58.834 37.500 0.00 0.00 0.00 4.69
20 21 5.164954 TGTTTTCTTTCACCTTGTTTTCCG 58.835 37.500 0.00 0.00 0.00 4.30
21 22 7.609760 AATGTTTTCTTTCACCTTGTTTTCC 57.390 32.000 0.00 0.00 0.00 3.13
22 23 9.581099 TCTAATGTTTTCTTTCACCTTGTTTTC 57.419 29.630 0.00 0.00 0.00 2.29
23 24 9.936759 TTCTAATGTTTTCTTTCACCTTGTTTT 57.063 25.926 0.00 0.00 0.00 2.43
24 25 9.936759 TTTCTAATGTTTTCTTTCACCTTGTTT 57.063 25.926 0.00 0.00 0.00 2.83
25 26 9.936759 TTTTCTAATGTTTTCTTTCACCTTGTT 57.063 25.926 0.00 0.00 0.00 2.83
26 27 9.586435 CTTTTCTAATGTTTTCTTTCACCTTGT 57.414 29.630 0.00 0.00 0.00 3.16
27 28 9.586435 ACTTTTCTAATGTTTTCTTTCACCTTG 57.414 29.630 0.00 0.00 0.00 3.61
28 29 9.586435 CACTTTTCTAATGTTTTCTTTCACCTT 57.414 29.630 0.00 0.00 0.00 3.50
29 30 8.966868 TCACTTTTCTAATGTTTTCTTTCACCT 58.033 29.630 0.00 0.00 0.00 4.00
30 31 9.750125 ATCACTTTTCTAATGTTTTCTTTCACC 57.250 29.630 0.00 0.00 0.00 4.02
39 40 9.045223 GCCTTTTCAATCACTTTTCTAATGTTT 57.955 29.630 0.00 0.00 0.00 2.83
40 41 8.203485 TGCCTTTTCAATCACTTTTCTAATGTT 58.797 29.630 0.00 0.00 0.00 2.71
41 42 7.653311 GTGCCTTTTCAATCACTTTTCTAATGT 59.347 33.333 0.00 0.00 0.00 2.71
42 43 7.652909 TGTGCCTTTTCAATCACTTTTCTAATG 59.347 33.333 0.00 0.00 0.00 1.90
43 44 7.725251 TGTGCCTTTTCAATCACTTTTCTAAT 58.275 30.769 0.00 0.00 0.00 1.73
44 45 7.106439 TGTGCCTTTTCAATCACTTTTCTAA 57.894 32.000 0.00 0.00 0.00 2.10
45 46 6.707440 TGTGCCTTTTCAATCACTTTTCTA 57.293 33.333 0.00 0.00 0.00 2.10
46 47 5.596836 TGTGCCTTTTCAATCACTTTTCT 57.403 34.783 0.00 0.00 0.00 2.52
47 48 6.042143 TCTTGTGCCTTTTCAATCACTTTTC 58.958 36.000 0.00 0.00 0.00 2.29
48 49 5.976458 TCTTGTGCCTTTTCAATCACTTTT 58.024 33.333 0.00 0.00 0.00 2.27
49 50 5.596836 TCTTGTGCCTTTTCAATCACTTT 57.403 34.783 0.00 0.00 0.00 2.66
50 51 5.351458 GTTCTTGTGCCTTTTCAATCACTT 58.649 37.500 0.00 0.00 0.00 3.16
51 52 4.202151 GGTTCTTGTGCCTTTTCAATCACT 60.202 41.667 0.00 0.00 0.00 3.41
52 53 4.051237 GGTTCTTGTGCCTTTTCAATCAC 58.949 43.478 0.00 0.00 0.00 3.06
53 54 3.703556 TGGTTCTTGTGCCTTTTCAATCA 59.296 39.130 0.00 0.00 0.00 2.57
54 55 4.051237 GTGGTTCTTGTGCCTTTTCAATC 58.949 43.478 0.00 0.00 0.00 2.67
55 56 3.181466 GGTGGTTCTTGTGCCTTTTCAAT 60.181 43.478 0.00 0.00 0.00 2.57
56 57 2.167487 GGTGGTTCTTGTGCCTTTTCAA 59.833 45.455 0.00 0.00 0.00 2.69
57 58 1.754226 GGTGGTTCTTGTGCCTTTTCA 59.246 47.619 0.00 0.00 0.00 2.69
58 59 1.754226 TGGTGGTTCTTGTGCCTTTTC 59.246 47.619 0.00 0.00 0.00 2.29
59 60 1.756538 CTGGTGGTTCTTGTGCCTTTT 59.243 47.619 0.00 0.00 0.00 2.27
60 61 1.064017 TCTGGTGGTTCTTGTGCCTTT 60.064 47.619 0.00 0.00 0.00 3.11
61 62 0.550914 TCTGGTGGTTCTTGTGCCTT 59.449 50.000 0.00 0.00 0.00 4.35
62 63 0.550914 TTCTGGTGGTTCTTGTGCCT 59.449 50.000 0.00 0.00 0.00 4.75
63 64 1.398692 TTTCTGGTGGTTCTTGTGCC 58.601 50.000 0.00 0.00 0.00 5.01
64 65 3.518634 TTTTTCTGGTGGTTCTTGTGC 57.481 42.857 0.00 0.00 0.00 4.57
84 85 4.450080 GTCGACCTTCTGAATACGGTTTTT 59.550 41.667 3.51 0.00 0.00 1.94
85 86 3.992427 GTCGACCTTCTGAATACGGTTTT 59.008 43.478 3.51 0.00 0.00 2.43
86 87 3.582780 GTCGACCTTCTGAATACGGTTT 58.417 45.455 3.51 0.00 0.00 3.27
87 88 2.415090 CGTCGACCTTCTGAATACGGTT 60.415 50.000 10.58 0.00 0.00 4.44
88 89 1.131883 CGTCGACCTTCTGAATACGGT 59.868 52.381 10.58 0.00 0.00 4.83
89 90 1.533338 CCGTCGACCTTCTGAATACGG 60.533 57.143 10.58 0.00 41.92 4.02
90 91 1.533338 CCCGTCGACCTTCTGAATACG 60.533 57.143 10.58 0.00 0.00 3.06
91 92 1.747355 TCCCGTCGACCTTCTGAATAC 59.253 52.381 10.58 0.00 0.00 1.89
92 93 2.133281 TCCCGTCGACCTTCTGAATA 57.867 50.000 10.58 0.00 0.00 1.75
93 94 1.263356 TTCCCGTCGACCTTCTGAAT 58.737 50.000 10.58 0.00 0.00 2.57
94 95 1.042229 TTTCCCGTCGACCTTCTGAA 58.958 50.000 10.58 3.10 0.00 3.02
95 96 1.042229 TTTTCCCGTCGACCTTCTGA 58.958 50.000 10.58 0.00 0.00 3.27
96 97 1.873698 TTTTTCCCGTCGACCTTCTG 58.126 50.000 10.58 0.00 0.00 3.02
112 113 0.970640 GGCCATTACGGGTGGTTTTT 59.029 50.000 0.00 0.00 39.01 1.94
113 114 1.245376 CGGCCATTACGGGTGGTTTT 61.245 55.000 2.24 0.00 39.01 2.43
114 115 1.676303 CGGCCATTACGGGTGGTTT 60.676 57.895 2.24 0.00 39.01 3.27
115 116 2.045731 CGGCCATTACGGGTGGTT 60.046 61.111 2.24 0.00 39.01 3.67
122 123 3.286751 CATGGGCCGGCCATTACG 61.287 66.667 44.46 24.46 37.98 3.18
123 124 2.123897 ACATGGGCCGGCCATTAC 60.124 61.111 44.46 28.47 37.98 1.89
124 125 2.194597 GACATGGGCCGGCCATTA 59.805 61.111 44.46 30.42 37.98 1.90
125 126 4.839706 GGACATGGGCCGGCCATT 62.840 66.667 44.46 29.26 37.98 3.16
130 131 2.445845 TAGGAGGACATGGGCCGG 60.446 66.667 0.00 0.00 0.00 6.13
131 132 1.749334 GAGTAGGAGGACATGGGCCG 61.749 65.000 0.00 0.00 0.00 6.13
132 133 1.749334 CGAGTAGGAGGACATGGGCC 61.749 65.000 0.00 0.00 0.00 5.80
133 134 0.755698 TCGAGTAGGAGGACATGGGC 60.756 60.000 0.00 0.00 0.00 5.36
134 135 2.002505 ATCGAGTAGGAGGACATGGG 57.997 55.000 0.00 0.00 0.00 4.00
135 136 3.133003 ACAAATCGAGTAGGAGGACATGG 59.867 47.826 0.00 0.00 0.00 3.66
136 137 4.392921 ACAAATCGAGTAGGAGGACATG 57.607 45.455 0.00 0.00 0.00 3.21
137 138 4.036498 CGTACAAATCGAGTAGGAGGACAT 59.964 45.833 0.00 0.00 31.00 3.06
138 139 3.376234 CGTACAAATCGAGTAGGAGGACA 59.624 47.826 0.00 0.00 31.00 4.02
139 140 3.791455 GCGTACAAATCGAGTAGGAGGAC 60.791 52.174 7.07 0.00 31.00 3.85
140 141 2.357009 GCGTACAAATCGAGTAGGAGGA 59.643 50.000 7.07 0.00 31.00 3.71
141 142 2.098607 TGCGTACAAATCGAGTAGGAGG 59.901 50.000 7.07 0.00 31.00 4.30
142 143 3.106672 GTGCGTACAAATCGAGTAGGAG 58.893 50.000 0.00 0.00 31.00 3.69
143 144 2.159338 GGTGCGTACAAATCGAGTAGGA 60.159 50.000 5.86 0.00 31.00 2.94
144 145 2.190981 GGTGCGTACAAATCGAGTAGG 58.809 52.381 5.86 0.00 0.00 3.18
145 146 2.597305 GTGGTGCGTACAAATCGAGTAG 59.403 50.000 5.86 0.00 0.00 2.57
146 147 2.030096 TGTGGTGCGTACAAATCGAGTA 60.030 45.455 5.86 0.00 0.00 2.59
147 148 1.269883 TGTGGTGCGTACAAATCGAGT 60.270 47.619 5.86 0.00 0.00 4.18
148 149 1.126113 GTGTGGTGCGTACAAATCGAG 59.874 52.381 5.86 0.00 0.00 4.04
149 150 1.141645 GTGTGGTGCGTACAAATCGA 58.858 50.000 5.86 0.00 0.00 3.59
150 151 1.144969 AGTGTGGTGCGTACAAATCG 58.855 50.000 5.86 0.00 0.00 3.34
151 152 3.122948 CAGTAGTGTGGTGCGTACAAATC 59.877 47.826 5.86 0.00 0.00 2.17
152 153 3.064207 CAGTAGTGTGGTGCGTACAAAT 58.936 45.455 5.86 0.00 0.00 2.32
153 154 2.475818 CAGTAGTGTGGTGCGTACAAA 58.524 47.619 5.86 0.00 0.00 2.83
154 155 1.870580 GCAGTAGTGTGGTGCGTACAA 60.871 52.381 5.86 0.00 0.00 2.41
155 156 0.319211 GCAGTAGTGTGGTGCGTACA 60.319 55.000 5.86 0.00 0.00 2.90
156 157 2.442084 GCAGTAGTGTGGTGCGTAC 58.558 57.895 0.00 0.00 0.00 3.67
157 158 4.979204 GCAGTAGTGTGGTGCGTA 57.021 55.556 0.00 0.00 0.00 4.42
160 161 1.738099 CCTCGCAGTAGTGTGGTGC 60.738 63.158 11.13 0.00 34.90 5.01
161 162 0.317160 TTCCTCGCAGTAGTGTGGTG 59.683 55.000 11.13 4.96 39.36 4.17
162 163 1.267121 ATTCCTCGCAGTAGTGTGGT 58.733 50.000 11.13 0.00 39.36 4.16
163 164 2.223829 CCTATTCCTCGCAGTAGTGTGG 60.224 54.545 11.13 5.80 39.62 4.17
164 165 2.688446 TCCTATTCCTCGCAGTAGTGTG 59.312 50.000 4.65 4.65 35.31 3.82
165 166 3.014304 TCCTATTCCTCGCAGTAGTGT 57.986 47.619 0.00 0.00 0.00 3.55
166 167 3.823873 AGATCCTATTCCTCGCAGTAGTG 59.176 47.826 0.00 0.00 0.00 2.74
167 168 4.076394 GAGATCCTATTCCTCGCAGTAGT 58.924 47.826 0.00 0.00 0.00 2.73
168 169 4.331968 AGAGATCCTATTCCTCGCAGTAG 58.668 47.826 0.00 0.00 32.52 2.57
169 170 4.374689 AGAGATCCTATTCCTCGCAGTA 57.625 45.455 0.00 0.00 32.52 2.74
170 171 3.237268 AGAGATCCTATTCCTCGCAGT 57.763 47.619 0.00 0.00 32.52 4.40
171 172 4.555262 GAAAGAGATCCTATTCCTCGCAG 58.445 47.826 0.00 0.00 32.52 5.18
172 173 3.322254 GGAAAGAGATCCTATTCCTCGCA 59.678 47.826 11.74 0.00 38.61 5.10
173 174 3.306433 GGGAAAGAGATCCTATTCCTCGC 60.306 52.174 16.28 2.51 40.90 5.03
174 175 3.259625 GGGGAAAGAGATCCTATTCCTCG 59.740 52.174 16.28 0.00 40.90 4.63
175 176 4.235372 TGGGGAAAGAGATCCTATTCCTC 58.765 47.826 16.28 14.21 41.82 3.71
176 177 4.302004 TGGGGAAAGAGATCCTATTCCT 57.698 45.455 16.28 0.00 40.90 3.36
177 178 4.323104 CGATGGGGAAAGAGATCCTATTCC 60.323 50.000 10.92 10.92 40.48 3.01
178 179 4.528596 TCGATGGGGAAAGAGATCCTATTC 59.471 45.833 0.00 0.00 39.57 1.75
179 180 4.284746 GTCGATGGGGAAAGAGATCCTATT 59.715 45.833 0.00 0.00 39.57 1.73
180 181 3.835395 GTCGATGGGGAAAGAGATCCTAT 59.165 47.826 0.00 0.00 39.57 2.57
181 182 3.231818 GTCGATGGGGAAAGAGATCCTA 58.768 50.000 0.00 0.00 39.57 2.94
182 183 2.043227 GTCGATGGGGAAAGAGATCCT 58.957 52.381 0.00 0.00 39.57 3.24
183 184 1.762957 TGTCGATGGGGAAAGAGATCC 59.237 52.381 0.00 0.00 38.86 3.36
184 185 2.483889 GGTGTCGATGGGGAAAGAGATC 60.484 54.545 0.00 0.00 0.00 2.75
185 186 1.486726 GGTGTCGATGGGGAAAGAGAT 59.513 52.381 0.00 0.00 0.00 2.75
186 187 0.902531 GGTGTCGATGGGGAAAGAGA 59.097 55.000 0.00 0.00 0.00 3.10
187 188 0.107654 GGGTGTCGATGGGGAAAGAG 60.108 60.000 0.00 0.00 0.00 2.85
188 189 0.546747 AGGGTGTCGATGGGGAAAGA 60.547 55.000 0.00 0.00 0.00 2.52
189 190 0.328258 AAGGGTGTCGATGGGGAAAG 59.672 55.000 0.00 0.00 0.00 2.62
190 191 0.326927 GAAGGGTGTCGATGGGGAAA 59.673 55.000 0.00 0.00 0.00 3.13
191 192 1.559065 GGAAGGGTGTCGATGGGGAA 61.559 60.000 0.00 0.00 0.00 3.97
192 193 1.993391 GGAAGGGTGTCGATGGGGA 60.993 63.158 0.00 0.00 0.00 4.81
193 194 2.257409 CTGGAAGGGTGTCGATGGGG 62.257 65.000 0.00 0.00 0.00 4.96
194 195 1.221840 CTGGAAGGGTGTCGATGGG 59.778 63.158 0.00 0.00 0.00 4.00
195 196 0.833287 ATCTGGAAGGGTGTCGATGG 59.167 55.000 0.00 0.00 0.00 3.51
196 197 1.482182 TGATCTGGAAGGGTGTCGATG 59.518 52.381 0.00 0.00 0.00 3.84
197 198 1.482593 GTGATCTGGAAGGGTGTCGAT 59.517 52.381 0.00 0.00 0.00 3.59
198 199 0.895530 GTGATCTGGAAGGGTGTCGA 59.104 55.000 0.00 0.00 0.00 4.20
199 200 0.608130 TGTGATCTGGAAGGGTGTCG 59.392 55.000 0.00 0.00 0.00 4.35
200 201 1.347707 TGTGTGATCTGGAAGGGTGTC 59.652 52.381 0.00 0.00 0.00 3.67
201 202 1.434188 TGTGTGATCTGGAAGGGTGT 58.566 50.000 0.00 0.00 0.00 4.16
202 203 2.154462 GTTGTGTGATCTGGAAGGGTG 58.846 52.381 0.00 0.00 0.00 4.61
203 204 1.270839 CGTTGTGTGATCTGGAAGGGT 60.271 52.381 0.00 0.00 0.00 4.34
204 205 1.442769 CGTTGTGTGATCTGGAAGGG 58.557 55.000 0.00 0.00 0.00 3.95
205 206 1.442769 CCGTTGTGTGATCTGGAAGG 58.557 55.000 0.00 0.00 0.00 3.46
206 207 0.798776 GCCGTTGTGTGATCTGGAAG 59.201 55.000 0.00 0.00 0.00 3.46
207 208 0.107643 TGCCGTTGTGTGATCTGGAA 59.892 50.000 0.00 0.00 0.00 3.53
208 209 0.602638 GTGCCGTTGTGTGATCTGGA 60.603 55.000 0.00 0.00 0.00 3.86
209 210 1.577328 GGTGCCGTTGTGTGATCTGG 61.577 60.000 0.00 0.00 0.00 3.86
210 211 0.884259 TGGTGCCGTTGTGTGATCTG 60.884 55.000 0.00 0.00 0.00 2.90
211 212 0.036732 ATGGTGCCGTTGTGTGATCT 59.963 50.000 0.00 0.00 0.00 2.75
212 213 0.447801 GATGGTGCCGTTGTGTGATC 59.552 55.000 0.00 0.00 0.00 2.92
213 214 0.036732 AGATGGTGCCGTTGTGTGAT 59.963 50.000 0.00 0.00 0.00 3.06
214 215 0.682292 TAGATGGTGCCGTTGTGTGA 59.318 50.000 0.00 0.00 0.00 3.58
215 216 1.078709 CTAGATGGTGCCGTTGTGTG 58.921 55.000 0.00 0.00 0.00 3.82
216 217 0.973632 TCTAGATGGTGCCGTTGTGT 59.026 50.000 0.00 0.00 0.00 3.72
217 218 2.093306 TTCTAGATGGTGCCGTTGTG 57.907 50.000 0.00 0.00 0.00 3.33
218 219 2.851263 TTTCTAGATGGTGCCGTTGT 57.149 45.000 0.00 0.00 0.00 3.32
237 238 1.657556 CCGCCGGTGTGTGATTTTT 59.342 52.632 15.14 0.00 0.00 1.94
238 239 2.265182 CCCGCCGGTGTGTGATTTT 61.265 57.895 15.14 0.00 0.00 1.82
239 240 2.671619 CCCGCCGGTGTGTGATTT 60.672 61.111 15.14 0.00 0.00 2.17
267 268 3.844090 GAGGACAGAGGAGGCGGC 61.844 72.222 0.00 0.00 0.00 6.53
268 269 1.671901 GAAGAGGACAGAGGAGGCGG 61.672 65.000 0.00 0.00 0.00 6.13
269 270 1.671901 GGAAGAGGACAGAGGAGGCG 61.672 65.000 0.00 0.00 0.00 5.52
270 271 0.325203 AGGAAGAGGACAGAGGAGGC 60.325 60.000 0.00 0.00 0.00 4.70
271 272 1.484038 CAGGAAGAGGACAGAGGAGG 58.516 60.000 0.00 0.00 0.00 4.30
272 273 0.823460 GCAGGAAGAGGACAGAGGAG 59.177 60.000 0.00 0.00 0.00 3.69
273 274 0.967887 CGCAGGAAGAGGACAGAGGA 60.968 60.000 0.00 0.00 0.00 3.71
274 275 1.515020 CGCAGGAAGAGGACAGAGG 59.485 63.158 0.00 0.00 0.00 3.69
288 289 2.684843 GCAACAGGAGAAGCCGCAG 61.685 63.158 0.00 0.00 43.43 5.18
289 290 2.669569 GCAACAGGAGAAGCCGCA 60.670 61.111 0.00 0.00 43.43 5.69
290 291 3.435186 GGCAACAGGAGAAGCCGC 61.435 66.667 0.00 0.00 43.43 6.53
292 293 2.361737 GGGGCAACAGGAGAAGCC 60.362 66.667 0.00 0.00 46.28 4.35
293 294 2.361737 GGGGGCAACAGGAGAAGC 60.362 66.667 0.00 0.00 39.74 3.86
294 295 1.303643 GTGGGGGCAACAGGAGAAG 60.304 63.158 0.00 0.00 39.74 2.85
295 296 2.840753 GGTGGGGGCAACAGGAGAA 61.841 63.158 0.00 0.00 39.74 2.87
296 297 3.256960 GGTGGGGGCAACAGGAGA 61.257 66.667 0.00 0.00 39.74 3.71
297 298 3.260100 AGGTGGGGGCAACAGGAG 61.260 66.667 0.00 0.00 39.74 3.69
298 299 3.256960 GAGGTGGGGGCAACAGGA 61.257 66.667 0.00 0.00 39.74 3.86
299 300 4.366684 GGAGGTGGGGGCAACAGG 62.367 72.222 0.00 0.00 39.74 4.00
300 301 4.366684 GGGAGGTGGGGGCAACAG 62.367 72.222 0.00 0.00 39.74 3.16
319 320 4.069232 TCAAGAGTCAGGCCGCCG 62.069 66.667 3.05 0.00 0.00 6.46
320 321 2.435059 GTCAAGAGTCAGGCCGCC 60.435 66.667 0.00 0.00 0.00 6.13
321 322 1.446966 GAGTCAAGAGTCAGGCCGC 60.447 63.158 0.00 0.00 0.00 6.53
322 323 1.153939 CGAGTCAAGAGTCAGGCCG 60.154 63.158 0.00 0.00 0.00 6.13
323 324 1.216710 CCGAGTCAAGAGTCAGGCC 59.783 63.158 0.00 0.00 0.00 5.19
324 325 1.446966 GCCGAGTCAAGAGTCAGGC 60.447 63.158 18.07 18.07 40.41 4.85
325 326 1.216710 GGCCGAGTCAAGAGTCAGG 59.783 63.158 5.81 8.10 0.00 3.86
326 327 0.108898 CTGGCCGAGTCAAGAGTCAG 60.109 60.000 0.00 0.00 0.00 3.51
327 328 0.827925 ACTGGCCGAGTCAAGAGTCA 60.828 55.000 0.00 0.00 0.00 3.41
328 329 1.133407 CTACTGGCCGAGTCAAGAGTC 59.867 57.143 10.60 0.00 35.96 3.36
329 330 1.178276 CTACTGGCCGAGTCAAGAGT 58.822 55.000 10.60 2.49 35.96 3.24
330 331 0.179124 GCTACTGGCCGAGTCAAGAG 60.179 60.000 10.60 5.19 35.96 2.85
331 332 1.890894 GCTACTGGCCGAGTCAAGA 59.109 57.895 10.60 0.00 35.96 3.02
332 333 1.517257 CGCTACTGGCCGAGTCAAG 60.517 63.158 10.60 6.08 35.96 3.02
333 334 1.529152 TTCGCTACTGGCCGAGTCAA 61.529 55.000 10.60 0.00 35.96 3.18
334 335 1.529152 TTTCGCTACTGGCCGAGTCA 61.529 55.000 10.60 0.00 35.96 3.41
335 336 1.077089 GTTTCGCTACTGGCCGAGTC 61.077 60.000 10.60 0.00 35.96 3.36
336 337 1.080025 GTTTCGCTACTGGCCGAGT 60.080 57.895 11.76 11.76 38.88 4.18
337 338 0.802607 GAGTTTCGCTACTGGCCGAG 60.803 60.000 0.00 0.00 37.74 4.63
338 339 1.214589 GAGTTTCGCTACTGGCCGA 59.785 57.895 0.00 0.00 37.74 5.54
339 340 1.810030 GGAGTTTCGCTACTGGCCG 60.810 63.158 0.00 0.00 37.74 6.13
340 341 1.810030 CGGAGTTTCGCTACTGGCC 60.810 63.158 0.00 0.00 37.74 5.36
341 342 1.080025 ACGGAGTTTCGCTACTGGC 60.080 57.895 0.00 0.00 37.78 4.85
350 351 7.923800 GCAAACAACTTGGAGACGGAGTTTC 62.924 48.000 0.00 0.00 41.28 2.78
351 352 6.218295 GCAAACAACTTGGAGACGGAGTTT 62.218 45.833 0.00 0.00 37.26 2.66
352 353 4.788803 GCAAACAACTTGGAGACGGAGTT 61.789 47.826 0.00 0.00 39.14 3.01
353 354 3.321271 GCAAACAACTTGGAGACGGAGT 61.321 50.000 0.00 0.00 38.64 3.85
354 355 1.264288 GCAAACAACTTGGAGACGGAG 59.736 52.381 0.00 0.00 35.38 4.63
355 356 1.305201 GCAAACAACTTGGAGACGGA 58.695 50.000 0.00 0.00 35.38 4.69
356 357 0.310854 GGCAAACAACTTGGAGACGG 59.689 55.000 0.00 0.00 35.38 4.79
357 358 0.041312 CGGCAAACAACTTGGAGACG 60.041 55.000 0.00 0.00 35.38 4.18
358 359 1.021968 ACGGCAAACAACTTGGAGAC 58.978 50.000 0.00 0.00 35.38 3.36
359 360 2.215196 GTACGGCAAACAACTTGGAGA 58.785 47.619 0.00 0.00 35.38 3.71
360 361 1.070175 CGTACGGCAAACAACTTGGAG 60.070 52.381 7.57 0.00 35.38 3.86
361 362 0.938713 CGTACGGCAAACAACTTGGA 59.061 50.000 7.57 0.00 35.38 3.53
362 363 0.658897 ACGTACGGCAAACAACTTGG 59.341 50.000 21.06 0.00 35.38 3.61
363 364 1.333435 GGACGTACGGCAAACAACTTG 60.333 52.381 24.89 0.00 38.15 3.16
364 365 0.939419 GGACGTACGGCAAACAACTT 59.061 50.000 24.89 0.00 0.00 2.66
365 366 0.179078 TGGACGTACGGCAAACAACT 60.179 50.000 24.89 0.00 0.00 3.16
366 367 0.869730 ATGGACGTACGGCAAACAAC 59.130 50.000 24.89 4.46 0.00 3.32
367 368 1.149987 GATGGACGTACGGCAAACAA 58.850 50.000 24.89 2.61 0.00 2.83
368 369 0.671163 GGATGGACGTACGGCAAACA 60.671 55.000 24.89 12.51 0.00 2.83
369 370 0.390735 AGGATGGACGTACGGCAAAC 60.391 55.000 24.89 10.89 0.00 2.93
370 371 0.390603 CAGGATGGACGTACGGCAAA 60.391 55.000 24.89 11.17 0.00 3.68
371 372 1.216977 CAGGATGGACGTACGGCAA 59.783 57.895 24.89 13.50 0.00 4.52
372 373 2.889617 CAGGATGGACGTACGGCA 59.110 61.111 24.89 9.70 0.00 5.69
373 374 2.585247 GCAGGATGGACGTACGGC 60.585 66.667 21.06 17.96 35.86 5.68
374 375 2.278596 CGCAGGATGGACGTACGG 60.279 66.667 21.06 1.43 35.86 4.02
375 376 2.954868 GCGCAGGATGGACGTACG 60.955 66.667 15.01 15.01 35.86 3.67
376 377 2.585247 GGCGCAGGATGGACGTAC 60.585 66.667 10.83 0.00 35.86 3.67
377 378 4.201679 CGGCGCAGGATGGACGTA 62.202 66.667 10.83 0.00 33.91 3.57
410 411 1.683441 GGAAGAAGCGGGGAGGAAA 59.317 57.895 0.00 0.00 0.00 3.13
413 414 2.330924 GATGGGAAGAAGCGGGGAGG 62.331 65.000 0.00 0.00 0.00 4.30
415 416 1.615124 TGATGGGAAGAAGCGGGGA 60.615 57.895 0.00 0.00 0.00 4.81
458 459 3.027412 TCACTATGGAGAGAAGCAGACC 58.973 50.000 0.00 0.00 0.00 3.85
459 460 3.699038 ACTCACTATGGAGAGAAGCAGAC 59.301 47.826 10.39 0.00 38.30 3.51
494 495 1.658095 CCCACAAAACAAACGCAACAG 59.342 47.619 0.00 0.00 0.00 3.16
500 501 3.157932 ACATCACCCACAAAACAAACG 57.842 42.857 0.00 0.00 0.00 3.60
505 506 2.955660 TCTCCAACATCACCCACAAAAC 59.044 45.455 0.00 0.00 0.00 2.43
508 509 2.092158 TGTTCTCCAACATCACCCACAA 60.092 45.455 0.00 0.00 37.61 3.33
509 510 1.492599 TGTTCTCCAACATCACCCACA 59.507 47.619 0.00 0.00 37.61 4.17
510 511 2.270352 TGTTCTCCAACATCACCCAC 57.730 50.000 0.00 0.00 37.61 4.61
511 512 3.304911 TTTGTTCTCCAACATCACCCA 57.695 42.857 0.00 0.00 42.28 4.51
512 513 4.559153 CAATTTGTTCTCCAACATCACCC 58.441 43.478 0.00 0.00 42.28 4.61
513 514 4.280677 TCCAATTTGTTCTCCAACATCACC 59.719 41.667 0.00 0.00 42.28 4.02
551 552 6.375377 TCGTGGAAAAATACTTTGAAATCGG 58.625 36.000 0.00 0.00 0.00 4.18
552 553 8.365210 CAATCGTGGAAAAATACTTTGAAATCG 58.635 33.333 0.00 0.00 0.00 3.34
562 563 5.290885 GGGATTTGCAATCGTGGAAAAATAC 59.709 40.000 0.00 0.00 46.51 1.89
564 565 4.252878 GGGATTTGCAATCGTGGAAAAAT 58.747 39.130 0.00 0.00 46.51 1.82
604 605 7.436673 GGTCATGTTCACATTCACTCTATAGAC 59.563 40.741 0.00 0.00 33.61 2.59
606 607 7.495901 AGGTCATGTTCACATTCACTCTATAG 58.504 38.462 0.00 0.00 33.61 1.31
639 640 3.749088 ACTCGAAGATCATAGCCGACTAG 59.251 47.826 0.00 0.00 33.89 2.57
647 648 9.952188 TGAATACACTTTACTCGAAGATCATAG 57.048 33.333 0.00 0.00 33.89 2.23
648 649 9.952188 CTGAATACACTTTACTCGAAGATCATA 57.048 33.333 0.00 0.00 33.89 2.15
698 699 2.889512 ACTTGTTCCCCAAATTCCCTC 58.110 47.619 0.00 0.00 31.20 4.30
699 700 3.401342 ACTACTTGTTCCCCAAATTCCCT 59.599 43.478 0.00 0.00 31.20 4.20
700 701 3.774734 ACTACTTGTTCCCCAAATTCCC 58.225 45.455 0.00 0.00 31.20 3.97
701 702 4.948004 CCTACTACTTGTTCCCCAAATTCC 59.052 45.833 0.00 0.00 31.20 3.01
702 703 4.948004 CCCTACTACTTGTTCCCCAAATTC 59.052 45.833 0.00 0.00 31.20 2.17
703 704 4.264217 CCCCTACTACTTGTTCCCCAAATT 60.264 45.833 0.00 0.00 31.20 1.82
704 705 3.268595 CCCCTACTACTTGTTCCCCAAAT 59.731 47.826 0.00 0.00 31.20 2.32
707 708 1.152701 ACCCCTACTACTTGTTCCCCA 59.847 52.381 0.00 0.00 0.00 4.96
711 712 3.606595 GGTGACCCCTACTACTTGTTC 57.393 52.381 0.00 0.00 0.00 3.18
750 768 1.029947 TGCCATGCTGCAGATCACAG 61.030 55.000 20.43 10.56 36.04 3.66
754 772 1.063649 CGTTGCCATGCTGCAGATC 59.936 57.895 20.43 0.12 43.21 2.75
755 773 2.412323 CCGTTGCCATGCTGCAGAT 61.412 57.895 20.43 5.31 43.21 2.90
757 775 3.332493 GACCGTTGCCATGCTGCAG 62.332 63.158 10.11 10.11 43.21 4.41
767 785 2.358247 ACGTGGATGGACCGTTGC 60.358 61.111 0.00 0.00 42.61 4.17
782 800 3.182967 GAGAACTTACTGATCCAGCACG 58.817 50.000 0.00 0.00 34.37 5.34
798 816 6.368516 GCCTCTATCAGCAATAATCTGAGAAC 59.631 42.308 0.00 0.00 43.02 3.01
813 831 5.451798 GGAAAGAGAGTTCAGCCTCTATCAG 60.452 48.000 0.00 0.00 41.85 2.90
822 840 2.568623 TTGGGGAAAGAGAGTTCAGC 57.431 50.000 0.00 0.00 0.00 4.26
823 841 6.660949 ACATATTTTGGGGAAAGAGAGTTCAG 59.339 38.462 0.00 0.00 0.00 3.02
830 848 6.758254 ACACAAACATATTTTGGGGAAAGAG 58.242 36.000 13.57 0.00 37.14 2.85
864 882 2.327325 ACCACAGGATAGTCACACCT 57.673 50.000 0.00 0.00 34.02 4.00
881 899 8.247562 CCTAATATCAGCAATCAGACTAGTACC 58.752 40.741 0.00 0.00 0.00 3.34
912 930 9.736023 ACAGAACAAACAGATTTCAGATTAAAC 57.264 29.630 0.00 0.00 0.00 2.01
992 1010 2.861274 TGCTGAACACCATGATTGACA 58.139 42.857 0.00 0.00 0.00 3.58
995 1013 2.559668 ACCTTGCTGAACACCATGATTG 59.440 45.455 0.00 0.00 0.00 2.67
1144 1167 2.933495 TACGGAACATTGTCTCCTCG 57.067 50.000 12.90 6.23 0.00 4.63
1150 1173 9.043678 CGTTTAAGTTAATTACGGAACATTGTC 57.956 33.333 10.64 0.00 0.00 3.18
1151 1174 8.938047 CGTTTAAGTTAATTACGGAACATTGT 57.062 30.769 10.64 0.00 0.00 2.71
1160 1183 6.853279 TCTCGTCCGTTTAAGTTAATTACG 57.147 37.500 11.29 11.29 0.00 3.18
1167 1190 9.813446 AATTATATCTTCTCGTCCGTTTAAGTT 57.187 29.630 0.00 0.00 0.00 2.66
1170 1193 9.252962 GGAAATTATATCTTCTCGTCCGTTTAA 57.747 33.333 0.00 0.00 0.00 1.52
1172 1195 7.224167 GTGGAAATTATATCTTCTCGTCCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
1173 1196 6.700520 GTGGAAATTATATCTTCTCGTCCGTT 59.299 38.462 0.00 0.00 0.00 4.44
1174 1197 6.214399 GTGGAAATTATATCTTCTCGTCCGT 58.786 40.000 0.00 0.00 0.00 4.69
1175 1198 5.342525 CGTGGAAATTATATCTTCTCGTCCG 59.657 44.000 0.00 0.00 0.00 4.79
1176 1199 6.144080 CACGTGGAAATTATATCTTCTCGTCC 59.856 42.308 7.95 0.00 33.58 4.79
1177 1200 6.144080 CCACGTGGAAATTATATCTTCTCGTC 59.856 42.308 31.31 0.00 37.39 4.20
1178 1201 5.983720 CCACGTGGAAATTATATCTTCTCGT 59.016 40.000 31.31 0.00 37.39 4.18
1179 1202 6.213677 TCCACGTGGAAATTATATCTTCTCG 58.786 40.000 34.60 1.96 42.18 4.04
1234 1299 7.556733 AGCAAGCAAATTTCATCAAAGAAAA 57.443 28.000 0.00 0.00 40.54 2.29
1246 1311 5.362263 ACACAGAATGAAGCAAGCAAATTT 58.638 33.333 0.00 0.00 39.69 1.82
1285 1351 3.162666 CGGATATCCTTAGCTACCACCA 58.837 50.000 19.61 0.00 0.00 4.17
1306 1373 7.223387 CAGCCAAAATGATAAAGATTAAGGTGC 59.777 37.037 0.00 0.00 0.00 5.01
1336 1404 2.672961 GCTGTCAGTGCCAGTACATA 57.327 50.000 2.71 0.00 32.41 2.29
1460 1554 5.106712 CCGTCATCAACATATTAATTCCCCG 60.107 44.000 0.00 0.00 0.00 5.73
1481 1577 2.358737 GCTTGCAGGCTGTACCGT 60.359 61.111 14.45 0.00 46.52 4.83
1482 1578 2.046892 AGCTTGCAGGCTGTACCG 60.047 61.111 24.00 6.54 46.52 4.02
1658 1870 2.985809 TGCATTCGCACAATTTAAGCAC 59.014 40.909 0.00 0.00 45.36 4.40
1668 1880 3.679639 ACTGATACAGATGCATTCGCACA 60.680 43.478 0.00 0.00 42.40 4.57
1728 1940 5.186215 TCGATGACTAACAACCACTAATCCA 59.814 40.000 0.00 0.00 0.00 3.41
1750 1962 1.466360 GCTGGCAGCAAACTGTATTCG 60.466 52.381 33.33 0.00 46.30 3.34
1820 2032 6.840527 CAAATTTTGGGCCCATTCCTATAAT 58.159 36.000 29.23 13.26 0.00 1.28
1845 2057 3.063997 CGGCATTTGTCATGAGTTCCTAC 59.936 47.826 0.00 0.00 0.00 3.18
1962 2177 2.749621 GTGTGCCTTTATTGAGTGGAGG 59.250 50.000 0.00 0.00 0.00 4.30
2074 2304 9.617523 ATGAAAAATTGAGTTTGAACCTTCATT 57.382 25.926 0.00 0.00 32.42 2.57
2188 2419 1.024271 GCTTTGCTCCACACAAGACA 58.976 50.000 0.00 0.00 0.00 3.41
2264 2495 8.731275 TGAAACACTGAATCAAGAAGAAAGTA 57.269 30.769 0.00 0.00 0.00 2.24
2468 2774 8.761497 GCTGCATCGAAAAATATAGTACTGTAA 58.239 33.333 5.39 0.00 0.00 2.41
2469 2775 7.384115 GGCTGCATCGAAAAATATAGTACTGTA 59.616 37.037 5.39 3.26 0.00 2.74
2470 2776 6.202954 GGCTGCATCGAAAAATATAGTACTGT 59.797 38.462 5.39 0.39 0.00 3.55
2471 2777 6.202762 TGGCTGCATCGAAAAATATAGTACTG 59.797 38.462 5.39 0.00 0.00 2.74
2486 2812 0.516877 TTCGTTTTCTGGCTGCATCG 59.483 50.000 0.50 0.00 0.00 3.84
2502 2828 5.006165 GCTACTCTCATCAACCAGATTTTCG 59.994 44.000 0.00 0.00 33.72 3.46
2526 2852 5.635280 TCTTTCATAAGAGCTGTCTTGTTCG 59.365 40.000 0.00 0.00 43.29 3.95
2635 2968 8.447787 TCGTTATAGTTGTTACCGTAAGAAAC 57.552 34.615 2.62 5.77 43.02 2.78
2667 3003 3.887110 CTGAGCCCTATTCAATTGCATCA 59.113 43.478 0.00 0.00 0.00 3.07
2677 3013 2.334023 ACCTCCATCTGAGCCCTATTC 58.666 52.381 0.00 0.00 39.98 1.75
2714 3050 6.042638 TCCAGTATCTGTTTCTTTCCTCTG 57.957 41.667 0.00 0.00 0.00 3.35
2727 3069 7.173907 CCAATTTAATAGGTGCTCCAGTATCTG 59.826 40.741 7.70 0.00 35.89 2.90
2805 3149 3.381272 TGAGGTCCAAAAGAAACTTGCAG 59.619 43.478 0.00 0.00 0.00 4.41
2877 3232 5.486526 AGACTAGTCAAAGAATGGAGCAAG 58.513 41.667 24.44 0.00 0.00 4.01
2988 3348 1.339727 ACGACCCTAACTTTCCATGCC 60.340 52.381 0.00 0.00 0.00 4.40
3150 3517 2.941453 TCTCTGTATCTTGCACGGAC 57.059 50.000 0.00 0.00 0.00 4.79
3175 3542 1.172812 GCCGAGGCAACAGAAAAGGT 61.173 55.000 9.58 0.00 41.49 3.50
3191 3558 1.650153 CGCAAAGATGAAACAATGCCG 59.350 47.619 0.00 0.00 0.00 5.69
3203 3576 3.146066 TGAAGTAACTTGGCGCAAAGAT 58.854 40.909 30.92 21.60 0.00 2.40
3211 3584 3.141767 AGGGAACTGAAGTAACTTGGC 57.858 47.619 0.00 0.00 41.13 4.52
3212 3585 5.239525 CAGAAAGGGAACTGAAGTAACTTGG 59.760 44.000 0.00 0.00 42.68 3.61
3213 3586 5.278022 GCAGAAAGGGAACTGAAGTAACTTG 60.278 44.000 0.00 0.00 42.68 3.16
3298 3677 0.106469 TATGCTCCACGGCTCTCTCT 60.106 55.000 0.00 0.00 0.00 3.10
3367 3746 0.768221 AGGTTGTCTTGGAGGCCAGA 60.768 55.000 5.01 0.00 33.81 3.86
3442 3821 2.031870 TGTCAGGTGATCCGTATGAGG 58.968 52.381 0.00 0.00 39.05 3.86
3513 3911 6.388278 AGTTTATCTTCGTACAAGGACTGTC 58.612 40.000 0.00 0.00 39.64 3.51
3647 4065 4.039124 ACTTCCAAAATTAACAGTGGGCAG 59.961 41.667 0.00 0.00 0.00 4.85
3660 4078 6.436532 AGAAGATGAGCATGAACTTCCAAAAT 59.563 34.615 0.00 0.00 38.04 1.82
3668 4086 4.903054 TCAACAGAAGATGAGCATGAACT 58.097 39.130 0.00 0.00 0.00 3.01
3687 4126 9.311916 CACAAATTTCTAGGTTCACATTTTCAA 57.688 29.630 0.00 0.00 0.00 2.69
3704 4143 1.795962 CCGTCGCCGCACAAATTTC 60.796 57.895 0.00 0.00 0.00 2.17
3719 4558 1.006102 CTGAGGTTTCACTCGCCGT 60.006 57.895 0.00 0.00 40.39 5.68
3733 4572 3.332485 ACCTATAGGACTAGGAGCCTGAG 59.668 52.174 26.01 7.79 40.76 3.35
3736 4575 2.306512 CGACCTATAGGACTAGGAGCCT 59.693 54.545 26.01 0.00 40.76 4.58
3779 4618 1.301479 GGGACCGGGATGAATACGC 60.301 63.158 6.32 0.00 0.00 4.42
3797 4703 4.636435 AAAGCCCCACCGTCACCG 62.636 66.667 0.00 0.00 0.00 4.94
3814 4720 1.631071 TTGTCACCACTCACCAGGCA 61.631 55.000 0.00 0.00 0.00 4.75
3832 4738 4.607293 TCATGAGCTGACTACAACAGTT 57.393 40.909 0.00 0.00 37.72 3.16
3872 4778 4.232221 CACTTGGCAAGCTACAGAAATTG 58.768 43.478 26.45 9.67 0.00 2.32
3917 4823 3.740115 AGTAGCACAAGGTGGTAAACTG 58.260 45.455 9.56 0.00 45.83 3.16
3932 4838 0.666274 CACGCGTGAAAGGAGTAGCA 60.666 55.000 34.93 0.00 31.66 3.49
3933 4839 0.388134 TCACGCGTGAAAGGAGTAGC 60.388 55.000 37.68 0.00 36.53 3.58
3934 4840 1.920574 CATCACGCGTGAAAGGAGTAG 59.079 52.381 41.74 20.83 43.58 2.57
3935 4841 1.271379 ACATCACGCGTGAAAGGAGTA 59.729 47.619 41.74 20.11 43.58 2.59
3936 4842 0.033504 ACATCACGCGTGAAAGGAGT 59.966 50.000 41.74 29.60 43.58 3.85
3937 4843 1.148310 AACATCACGCGTGAAAGGAG 58.852 50.000 41.74 29.02 43.58 3.69
3938 4844 1.262950 CAAACATCACGCGTGAAAGGA 59.737 47.619 41.74 22.41 43.58 3.36
3939 4845 1.262950 TCAAACATCACGCGTGAAAGG 59.737 47.619 41.74 33.18 43.58 3.11
3940 4846 2.661504 TCAAACATCACGCGTGAAAG 57.338 45.000 41.74 35.61 43.58 2.62
3941 4847 3.991121 TCTATCAAACATCACGCGTGAAA 59.009 39.130 41.74 23.98 43.58 2.69
3942 4848 3.580731 TCTATCAAACATCACGCGTGAA 58.419 40.909 41.74 26.58 43.58 3.18
3943 4849 3.224884 TCTATCAAACATCACGCGTGA 57.775 42.857 40.57 40.57 44.59 4.35
3952 4858 6.259608 GCAGCTAGTCACAATCTATCAAACAT 59.740 38.462 0.00 0.00 0.00 2.71
3961 4867 0.460987 GCGGCAGCTAGTCACAATCT 60.461 55.000 0.00 0.00 41.01 2.40
4030 4943 1.268032 CGCCAAGTCATTAACCATCGC 60.268 52.381 0.00 0.00 0.00 4.58
4043 4956 2.181021 GACGTCCGATCGCCAAGT 59.819 61.111 10.32 6.59 0.00 3.16
4054 4967 5.220491 GCTCAATAAGAATGAAGTGACGTCC 60.220 44.000 14.12 4.42 0.00 4.79
4063 4976 7.886629 AGCTATTTGGCTCAATAAGAATGAA 57.113 32.000 0.00 0.00 38.24 2.57
4151 5068 3.873679 CTCCTGCTGCCCTTTGCCA 62.874 63.158 0.00 0.00 40.16 4.92
4154 5071 2.045131 GCTCTCCTGCTGCCCTTTG 61.045 63.158 0.00 0.00 0.00 2.77
4160 5077 2.418910 TACGAGGCTCTCCTGCTGC 61.419 63.158 13.50 0.00 44.46 5.25
4164 5081 3.134574 AGATAGTACGAGGCTCTCCTG 57.865 52.381 13.50 0.00 44.46 3.86
4165 5082 5.973900 GTACAAGATAGTACGAGGCTCTCCT 60.974 48.000 13.50 7.71 39.11 3.69
4166 5083 3.215975 ACAAGATAGTACGAGGCTCTCC 58.784 50.000 13.50 0.00 0.00 3.71
4167 5084 4.815308 TGTACAAGATAGTACGAGGCTCTC 59.185 45.833 13.50 1.85 45.66 3.20
4168 5085 4.778579 TGTACAAGATAGTACGAGGCTCT 58.221 43.478 13.50 2.35 45.66 4.09
4169 5086 4.575645 ACTGTACAAGATAGTACGAGGCTC 59.424 45.833 3.87 3.87 45.66 4.70
4170 5087 4.525024 ACTGTACAAGATAGTACGAGGCT 58.475 43.478 0.00 0.00 45.66 4.58
4201 5118 5.181245 GGCTTGTTGTACATGTGTTACAGAT 59.819 40.000 9.11 0.00 0.00 2.90
4208 5125 1.953686 GGTGGCTTGTTGTACATGTGT 59.046 47.619 9.11 0.00 0.00 3.72
4209 5126 1.952990 TGGTGGCTTGTTGTACATGTG 59.047 47.619 9.11 0.00 0.00 3.21
4253 5183 2.104170 CTAACCCCTGTCTCTCTCACC 58.896 57.143 0.00 0.00 0.00 4.02
4293 5223 6.243148 AGCTAACATTGATGATATGCATGGA 58.757 36.000 10.16 0.00 37.34 3.41
4311 5241 4.501071 TGGGTATTCAGAAACGAGCTAAC 58.499 43.478 0.00 0.00 0.00 2.34
4335 5265 0.841961 AGCTGGCTATGAGGATTGCA 59.158 50.000 0.00 0.00 32.52 4.08
4344 5274 1.593750 GCGTGGAGAGCTGGCTATG 60.594 63.158 0.00 0.00 0.00 2.23
4374 5304 4.814771 CCATTTAGGTATCCCTCGTTTCAC 59.185 45.833 0.00 0.00 41.45 3.18
4392 5322 6.368516 CAGTAAATTTTTGGCATCGACCATTT 59.631 34.615 0.00 0.00 40.13 2.32
4410 5340 7.548780 ACAAATGCACACAAGTTTTCAGTAAAT 59.451 29.630 0.00 0.00 0.00 1.40
4411 5341 6.870965 ACAAATGCACACAAGTTTTCAGTAAA 59.129 30.769 0.00 0.00 0.00 2.01
4412 5342 6.393990 ACAAATGCACACAAGTTTTCAGTAA 58.606 32.000 0.00 0.00 0.00 2.24
4438 5368 4.048504 GTGTTGGTCAAAATAGCCACAAC 58.951 43.478 0.00 0.00 37.73 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.