Multiple sequence alignment - TraesCS7A01G260500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G260500 chr7A 100.000 7060 0 0 1 7060 252714654 252721713 0.000000e+00 13038.0
1 TraesCS7A01G260500 chr7A 92.935 184 10 1 4615 4798 473817387 473817567 1.510000e-66 265.0
2 TraesCS7A01G260500 chr7A 77.888 303 40 12 6486 6785 708583795 708584073 5.670000e-36 163.0
3 TraesCS7A01G260500 chr7A 93.000 100 4 3 6488 6586 28174194 28174097 7.380000e-30 143.0
4 TraesCS7A01G260500 chr7A 93.182 44 1 2 5259 5301 183841948 183841990 5.910000e-06 63.9
5 TraesCS7A01G260500 chr7D 92.028 2559 75 43 1 2489 237409725 237412224 0.000000e+00 3476.0
6 TraesCS7A01G260500 chr7D 96.664 1199 28 6 2767 3961 237412850 237414040 0.000000e+00 1982.0
7 TraesCS7A01G260500 chr7D 94.797 1134 37 8 5253 6365 237415118 237416250 0.000000e+00 1748.0
8 TraesCS7A01G260500 chr7D 95.932 590 18 4 4025 4608 237414031 237414620 0.000000e+00 952.0
9 TraesCS7A01G260500 chr7D 95.852 458 15 2 4801 5258 237414627 237415080 0.000000e+00 737.0
10 TraesCS7A01G260500 chr7D 94.904 157 7 1 2615 2771 237412422 237412577 1.970000e-60 244.0
11 TraesCS7A01G260500 chr7D 94.558 147 7 1 2490 2635 237412256 237412402 7.130000e-55 226.0
12 TraesCS7A01G260500 chr7D 93.407 91 5 1 6400 6490 237416349 237416438 4.440000e-27 134.0
13 TraesCS7A01G260500 chr7D 94.000 50 3 0 5253 5302 237415128 237415079 7.590000e-10 76.8
14 TraesCS7A01G260500 chr7D 91.111 45 4 0 5259 5303 577775978 577775934 2.130000e-05 62.1
15 TraesCS7A01G260500 chr7B 90.859 2549 97 49 1 2489 214069919 214072391 0.000000e+00 3291.0
16 TraesCS7A01G260500 chr7B 96.131 1344 45 5 2628 3966 214072491 214073832 0.000000e+00 2187.0
17 TraesCS7A01G260500 chr7B 92.879 1278 43 15 5254 6488 214074909 214076181 0.000000e+00 1812.0
18 TraesCS7A01G260500 chr7B 94.604 593 23 4 4025 4610 214073817 214074407 0.000000e+00 909.0
19 TraesCS7A01G260500 chr7B 97.162 458 13 0 4801 5258 214074412 214074869 0.000000e+00 774.0
20 TraesCS7A01G260500 chr7B 100.000 72 0 0 2490 2561 214072423 214072494 4.440000e-27 134.0
21 TraesCS7A01G260500 chr6D 92.683 574 38 3 6488 7060 438318295 438317725 0.000000e+00 824.0
22 TraesCS7A01G260500 chr6D 78.609 575 117 4 6487 7060 55943896 55944465 6.690000e-100 375.0
23 TraesCS7A01G260500 chr6D 90.426 188 15 2 4615 4802 191801011 191800827 1.970000e-60 244.0
24 TraesCS7A01G260500 chr6D 93.069 101 7 0 6486 6586 87464747 87464647 1.590000e-31 148.0
25 TraesCS7A01G260500 chr3D 92.361 576 40 2 6486 7060 142699708 142700280 0.000000e+00 817.0
26 TraesCS7A01G260500 chr3D 91.544 544 42 3 6487 7029 30408550 30408010 0.000000e+00 747.0
27 TraesCS7A01G260500 chr3D 89.744 195 15 4 4615 4807 400704827 400705018 1.970000e-60 244.0
28 TraesCS7A01G260500 chr2B 83.421 573 89 4 6490 7060 451954448 451953880 1.740000e-145 527.0
29 TraesCS7A01G260500 chr2B 79.699 133 23 4 1320 1450 260767754 260767624 7.540000e-15 93.5
30 TraesCS7A01G260500 chr2B 82.828 99 15 2 1352 1449 621968165 621968068 3.510000e-13 87.9
31 TraesCS7A01G260500 chr5B 80.210 571 96 9 6490 7060 159735959 159735406 5.100000e-111 412.0
32 TraesCS7A01G260500 chr5B 90.173 173 17 0 1278 1450 471402025 471402197 7.130000e-55 226.0
33 TraesCS7A01G260500 chr3B 79.861 576 95 10 6487 7060 167038754 167039310 1.100000e-107 401.0
34 TraesCS7A01G260500 chr3B 90.361 83 6 2 3954 4036 617430491 617430411 2.690000e-19 108.0
35 TraesCS7A01G260500 chr5D 76.573 572 120 13 6490 7058 338533213 338533773 1.150000e-77 302.0
36 TraesCS7A01G260500 chr5D 93.684 190 9 2 4615 4804 59251989 59251803 1.500000e-71 281.0
37 TraesCS7A01G260500 chr5D 90.173 173 17 0 1278 1450 391373589 391373761 7.130000e-55 226.0
38 TraesCS7A01G260500 chr4D 92.708 192 11 2 4615 4806 5826219 5826407 2.510000e-69 274.0
39 TraesCS7A01G260500 chr1D 93.122 189 10 2 4615 4803 299580042 299579857 2.510000e-69 274.0
40 TraesCS7A01G260500 chr1D 91.414 198 14 2 4605 4801 490031135 490031330 1.170000e-67 268.0
41 TraesCS7A01G260500 chr1D 89.947 189 14 4 4615 4801 461884024 461883839 9.150000e-59 239.0
42 TraesCS7A01G260500 chr1D 91.304 46 4 0 5256 5301 316619711 316619666 5.910000e-06 63.9
43 TraesCS7A01G260500 chr1D 92.857 42 3 0 5260 5301 96922272 96922313 2.130000e-05 62.1
44 TraesCS7A01G260500 chr6A 91.979 187 10 3 4615 4801 70207805 70207986 2.530000e-64 257.0
45 TraesCS7A01G260500 chr5A 89.944 179 18 0 1272 1450 494570461 494570639 1.530000e-56 231.0
46 TraesCS7A01G260500 chr5A 78.618 304 44 13 6485 6785 670613924 670613639 1.560000e-41 182.0
47 TraesCS7A01G260500 chr6B 74.048 578 139 8 6488 7060 392492731 392493302 7.130000e-55 226.0
48 TraesCS7A01G260500 chr2A 74.017 585 128 17 6488 7060 185965757 185966329 4.290000e-52 217.0
49 TraesCS7A01G260500 chr2A 82.828 99 15 2 1352 1449 670962135 670962038 3.510000e-13 87.9
50 TraesCS7A01G260500 chrUn 92.308 78 4 2 3967 4042 348740578 348740501 7.490000e-20 110.0
51 TraesCS7A01G260500 chrUn 92.308 78 4 2 3967 4042 364369530 364369453 7.490000e-20 110.0
52 TraesCS7A01G260500 chrUn 92.308 78 4 2 3967 4042 374196357 374196434 7.490000e-20 110.0
53 TraesCS7A01G260500 chrUn 92.308 78 4 2 3967 4042 374198215 374198292 7.490000e-20 110.0
54 TraesCS7A01G260500 chrUn 87.097 93 8 3 3967 4058 11849382 11849471 1.250000e-17 102.0
55 TraesCS7A01G260500 chrUn 87.097 93 8 3 3967 4058 351755972 351755883 1.250000e-17 102.0
56 TraesCS7A01G260500 chrUn 87.097 93 8 3 3967 4058 361811399 361811488 1.250000e-17 102.0
57 TraesCS7A01G260500 chrUn 87.097 93 8 3 3967 4058 380526878 380526789 1.250000e-17 102.0
58 TraesCS7A01G260500 chr2D 82.353 102 16 2 1349 1449 525513039 525513139 3.510000e-13 87.9
59 TraesCS7A01G260500 chr1B 95.238 42 2 0 5259 5300 156593055 156593096 4.570000e-07 67.6
60 TraesCS7A01G260500 chr1A 92.857 42 3 0 5260 5301 91504083 91504042 2.130000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G260500 chr7A 252714654 252721713 7059 False 13038.000000 13038 100.00000 1 7060 1 chr7A.!!$F2 7059
1 TraesCS7A01G260500 chr7D 237409725 237416438 6713 False 1187.375000 3476 94.76775 1 6490 8 chr7D.!!$F1 6489
2 TraesCS7A01G260500 chr7B 214069919 214076181 6262 False 1517.833333 3291 95.27250 1 6488 6 chr7B.!!$F1 6487
3 TraesCS7A01G260500 chr6D 438317725 438318295 570 True 824.000000 824 92.68300 6488 7060 1 chr6D.!!$R3 572
4 TraesCS7A01G260500 chr6D 55943896 55944465 569 False 375.000000 375 78.60900 6487 7060 1 chr6D.!!$F1 573
5 TraesCS7A01G260500 chr3D 142699708 142700280 572 False 817.000000 817 92.36100 6486 7060 1 chr3D.!!$F1 574
6 TraesCS7A01G260500 chr3D 30408010 30408550 540 True 747.000000 747 91.54400 6487 7029 1 chr3D.!!$R1 542
7 TraesCS7A01G260500 chr2B 451953880 451954448 568 True 527.000000 527 83.42100 6490 7060 1 chr2B.!!$R2 570
8 TraesCS7A01G260500 chr5B 159735406 159735959 553 True 412.000000 412 80.21000 6490 7060 1 chr5B.!!$R1 570
9 TraesCS7A01G260500 chr3B 167038754 167039310 556 False 401.000000 401 79.86100 6487 7060 1 chr3B.!!$F1 573
10 TraesCS7A01G260500 chr5D 338533213 338533773 560 False 302.000000 302 76.57300 6490 7058 1 chr5D.!!$F1 568
11 TraesCS7A01G260500 chr6B 392492731 392493302 571 False 226.000000 226 74.04800 6488 7060 1 chr6B.!!$F1 572
12 TraesCS7A01G260500 chr2A 185965757 185966329 572 False 217.000000 217 74.01700 6488 7060 1 chr2A.!!$F1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.034198 GGTTAGCTAGGCTAGGCTGC 59.966 60.0 27.95 25.49 42.34 5.25 F
723 743 0.256464 AGCCTAGAGACGGTACTGCT 59.744 55.0 0.23 0.00 0.00 4.24 F
2290 2385 0.247736 CAGGTATATCCGGCCTGCTC 59.752 60.0 11.52 0.00 42.54 4.26 F
2446 2541 0.784778 GACTTGTAGACTGTGCGTGC 59.215 55.0 0.00 0.00 0.00 5.34 F
3984 4439 0.109913 AAAAGTGGTCGGACCCTTCC 59.890 55.0 23.81 9.51 37.50 3.46 F
5513 6022 0.036952 ACGCACATCAACTCCCTCTG 60.037 55.0 0.00 0.00 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1451 1496 0.894141 TGGAATTGGCGGGTGAAATG 59.106 50.0 0.00 0.00 0.00 2.32 R
2444 2539 0.244721 CTCGAGTCATCCACACTGCA 59.755 55.0 3.62 0.00 0.00 4.41 R
3965 4420 0.109913 GGAAGGGTCCGACCACTTTT 59.890 55.0 19.43 7.59 41.02 2.27 R
4013 4468 0.750182 TTAAATAGGCAGCCCGGTGC 60.750 55.0 8.22 10.35 43.19 5.01 R
5801 6310 0.036732 TGGGGATGTGTTCAGTCTGC 59.963 55.0 0.00 0.00 0.00 4.26 R
6365 6895 1.009829 GCTGCTCCGGTGTTAGATTG 58.990 55.0 0.00 0.00 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.953775 AACCTGTGGTCGGCCTGG 61.954 66.667 7.97 9.77 33.12 4.45
96 97 4.396790 TGATGCGTGGGTTATTTTAACCTC 59.603 41.667 14.35 7.03 40.15 3.85
137 138 1.069358 GTGGTTAGCTAGGCTAGGCTG 59.931 57.143 27.95 18.01 42.34 4.85
138 139 0.034198 GGTTAGCTAGGCTAGGCTGC 59.966 60.000 27.95 25.49 42.34 5.25
139 140 1.044611 GTTAGCTAGGCTAGGCTGCT 58.955 55.000 30.88 30.88 42.34 4.24
140 141 2.240279 GTTAGCTAGGCTAGGCTGCTA 58.760 52.381 29.43 29.43 42.34 3.49
141 142 1.912417 TAGCTAGGCTAGGCTGCTAC 58.088 55.000 29.43 18.08 40.44 3.58
142 143 0.830023 AGCTAGGCTAGGCTGCTACC 60.830 60.000 28.91 14.78 36.99 3.18
143 144 1.115930 GCTAGGCTAGGCTGCTACCA 61.116 60.000 27.95 6.55 0.00 3.25
144 145 0.676736 CTAGGCTAGGCTGCTACCAC 59.323 60.000 27.95 0.00 0.00 4.16
145 146 0.759436 TAGGCTAGGCTGCTACCACC 60.759 60.000 27.95 0.00 0.00 4.61
146 147 2.066999 GGCTAGGCTGCTACCACCT 61.067 63.158 9.46 0.00 37.61 4.00
221 225 1.631405 TAGCAAGCACTTGGCCAAAT 58.369 45.000 20.91 6.63 46.50 2.32
222 226 0.319405 AGCAAGCACTTGGCCAAATC 59.681 50.000 20.91 11.14 46.50 2.17
223 227 1.010419 GCAAGCACTTGGCCAAATCG 61.010 55.000 20.91 10.78 46.50 3.34
224 228 0.597568 CAAGCACTTGGCCAAATCGA 59.402 50.000 20.91 0.00 46.50 3.59
225 229 1.000385 CAAGCACTTGGCCAAATCGAA 60.000 47.619 20.91 0.00 46.50 3.71
262 266 2.108344 GACGAGACGATCTCTCCCGC 62.108 65.000 13.33 3.75 42.50 6.13
277 287 1.931172 TCCCGCGTACTACGTACTAAC 59.069 52.381 4.92 0.00 44.73 2.34
339 349 6.930068 ATAAAGGGCGATACAATAGTAGGT 57.070 37.500 0.00 0.00 32.86 3.08
470 486 0.889186 ACCCCAGCGACACAAATCAC 60.889 55.000 0.00 0.00 0.00 3.06
473 489 0.798776 CCAGCGACACAAATCACCTC 59.201 55.000 0.00 0.00 0.00 3.85
474 490 1.609061 CCAGCGACACAAATCACCTCT 60.609 52.381 0.00 0.00 0.00 3.69
475 491 1.728971 CAGCGACACAAATCACCTCTC 59.271 52.381 0.00 0.00 0.00 3.20
476 492 1.620819 AGCGACACAAATCACCTCTCT 59.379 47.619 0.00 0.00 0.00 3.10
477 493 1.996191 GCGACACAAATCACCTCTCTC 59.004 52.381 0.00 0.00 0.00 3.20
478 494 2.353208 GCGACACAAATCACCTCTCTCT 60.353 50.000 0.00 0.00 0.00 3.10
479 495 3.506810 CGACACAAATCACCTCTCTCTC 58.493 50.000 0.00 0.00 0.00 3.20
480 496 3.192422 CGACACAAATCACCTCTCTCTCT 59.808 47.826 0.00 0.00 0.00 3.10
481 497 4.674101 CGACACAAATCACCTCTCTCTCTC 60.674 50.000 0.00 0.00 0.00 3.20
482 498 4.415596 ACACAAATCACCTCTCTCTCTCT 58.584 43.478 0.00 0.00 0.00 3.10
483 499 4.462483 ACACAAATCACCTCTCTCTCTCTC 59.538 45.833 0.00 0.00 0.00 3.20
484 500 4.023291 ACAAATCACCTCTCTCTCTCTCC 58.977 47.826 0.00 0.00 0.00 3.71
492 508 3.312890 CTCTCTCTCTCTCCCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
495 511 4.170053 TCTCTCTCTCTCCCTCTCTCTCTA 59.830 50.000 0.00 0.00 0.00 2.43
520 536 2.408704 GCAAGTACTTGTACTGACAGCG 59.591 50.000 30.90 7.07 42.31 5.18
525 541 2.449031 CTTGTACTGACAGCGCCCCA 62.449 60.000 2.29 0.00 36.76 4.96
566 582 2.223340 CCATATCTTTGTTGCTCGTGCC 60.223 50.000 7.05 0.00 38.71 5.01
722 742 0.382515 CAGCCTAGAGACGGTACTGC 59.617 60.000 0.23 0.00 0.00 4.40
723 743 0.256464 AGCCTAGAGACGGTACTGCT 59.744 55.000 0.23 0.00 0.00 4.24
724 744 1.489649 AGCCTAGAGACGGTACTGCTA 59.510 52.381 0.23 0.00 0.00 3.49
729 752 0.664224 GAGACGGTACTGCTAGGCTC 59.336 60.000 0.23 0.00 0.00 4.70
736 759 4.277593 CTGCTAGGCTCGGCTCGG 62.278 72.222 12.40 0.00 0.00 4.63
756 779 0.318107 CCTGCAAAACAACAGCCTCG 60.318 55.000 0.00 0.00 32.37 4.63
856 879 2.832661 TTGCCTGTGTGGGTGTGC 60.833 61.111 0.00 0.00 36.00 4.57
915 938 1.836802 ATAGCTACTAGGCCTACCGC 58.163 55.000 8.91 11.46 42.76 5.68
926 950 2.278466 CTACCGCGCTGAGCTGAG 60.278 66.667 5.61 0.00 45.59 3.35
927 951 4.498520 TACCGCGCTGAGCTGAGC 62.499 66.667 15.96 15.96 45.59 4.26
930 954 4.790861 CGCGCTGAGCTGAGCTGA 62.791 66.667 23.02 0.99 45.59 4.26
931 955 2.886604 GCGCTGAGCTGAGCTGAG 60.887 66.667 23.02 16.80 42.54 3.35
1451 1496 1.470098 CCAACAGTGCAGCAGGTAATC 59.530 52.381 0.00 0.00 0.00 1.75
1510 1555 7.295952 TGAATCAAATCGTAGCTCTTCTTTC 57.704 36.000 0.00 0.00 0.00 2.62
1511 1556 7.099764 TGAATCAAATCGTAGCTCTTCTTTCT 58.900 34.615 0.00 0.00 0.00 2.52
1608 1681 8.079809 CCGTGACATTATTAGTTTGTTTTTCCT 58.920 33.333 0.00 0.00 0.00 3.36
1671 1744 1.810755 CTTCTTTACCTTTCCCGGCAC 59.189 52.381 0.00 0.00 0.00 5.01
1703 1776 1.699083 TCTCATTTGCTCCTGTCACCA 59.301 47.619 0.00 0.00 0.00 4.17
1739 1812 4.793216 GCTTGTGTTACCTGAATTATTGCG 59.207 41.667 0.00 0.00 0.00 4.85
1755 1828 0.653636 TGCGACGCTTTTTCTTTCGT 59.346 45.000 22.08 0.00 37.92 3.85
1924 2000 3.973657 AGAATTCAGCACTGCACAAAAG 58.026 40.909 8.44 0.00 0.00 2.27
2089 2171 3.039405 GCGACACTGTTCTGATATCGAG 58.961 50.000 0.00 0.00 0.00 4.04
2132 2214 1.663702 CGATGATAACCCGGACGGC 60.664 63.158 0.73 0.00 33.26 5.68
2204 2286 2.062971 AGGTGGATCCATGTGCATTC 57.937 50.000 19.62 1.52 39.02 2.67
2265 2360 6.235664 GGTCTGGGACTGTCAATTACTTAAA 58.764 40.000 10.38 0.00 32.47 1.52
2290 2385 0.247736 CAGGTATATCCGGCCTGCTC 59.752 60.000 11.52 0.00 42.54 4.26
2301 2396 1.442526 GGCCTGCTCCATTCATCACG 61.443 60.000 0.00 0.00 0.00 4.35
2303 2398 1.640069 CTGCTCCATTCATCACGCG 59.360 57.895 3.53 3.53 0.00 6.01
2341 2436 1.153489 CACATCCGAGCCCTCTGTG 60.153 63.158 2.94 2.94 30.59 3.66
2346 2441 0.904865 TCCGAGCCCTCTGTGTCAAT 60.905 55.000 0.00 0.00 0.00 2.57
2356 2451 2.229784 CTCTGTGTCAATGGAAAAGGCC 59.770 50.000 0.00 0.00 0.00 5.19
2391 2486 9.330220 TCCCAAACCTAGAAAGTTTATAGTACT 57.670 33.333 14.51 0.00 35.71 2.73
2432 2527 2.129607 GCAAAATGCAGTGTGGACTTG 58.870 47.619 6.44 0.00 44.26 3.16
2433 2528 2.481795 GCAAAATGCAGTGTGGACTTGT 60.482 45.455 6.44 0.00 44.26 3.16
2434 2529 3.243367 GCAAAATGCAGTGTGGACTTGTA 60.243 43.478 6.44 0.00 44.26 2.41
2436 2531 3.769739 AATGCAGTGTGGACTTGTAGA 57.230 42.857 0.00 0.00 0.00 2.59
2437 2532 2.526304 TGCAGTGTGGACTTGTAGAC 57.474 50.000 0.00 0.00 0.00 2.59
2438 2533 2.039418 TGCAGTGTGGACTTGTAGACT 58.961 47.619 0.00 0.00 0.00 3.24
2439 2534 2.224042 TGCAGTGTGGACTTGTAGACTG 60.224 50.000 0.00 0.00 40.14 3.51
2440 2535 2.224066 GCAGTGTGGACTTGTAGACTGT 60.224 50.000 0.00 0.00 39.56 3.55
2441 2536 3.384668 CAGTGTGGACTTGTAGACTGTG 58.615 50.000 0.00 0.00 34.55 3.66
2442 2537 2.135933 GTGTGGACTTGTAGACTGTGC 58.864 52.381 0.00 0.00 0.00 4.57
2444 2539 1.037493 TGGACTTGTAGACTGTGCGT 58.963 50.000 0.00 0.00 0.00 5.24
2445 2540 1.269569 TGGACTTGTAGACTGTGCGTG 60.270 52.381 0.00 0.00 0.00 5.34
2446 2541 0.784778 GACTTGTAGACTGTGCGTGC 59.215 55.000 0.00 0.00 0.00 5.34
2583 2709 7.506328 AAAGGTTAATGGTAGTGTCAACTTC 57.494 36.000 0.00 0.00 37.88 3.01
2594 2720 5.705609 AGTGTCAACTTCCGCAAAAATAT 57.294 34.783 0.00 0.00 30.14 1.28
2626 2792 5.126061 AGTGCCAACTGAAAATGATGTATCC 59.874 40.000 0.00 0.00 34.48 2.59
2660 2826 1.878953 CGACACCAACCCATATAGCC 58.121 55.000 0.00 0.00 0.00 3.93
2669 2835 4.383552 CCAACCCATATAGCCTGATCTAGC 60.384 50.000 0.00 0.00 0.00 3.42
2681 2847 3.046390 CTGATCTAGCGATTCGGTTGAC 58.954 50.000 21.06 15.71 40.92 3.18
2874 3318 6.372937 GGGATAGCATTTCTAGGTCATTAAGC 59.627 42.308 0.00 0.00 0.00 3.09
3213 3659 9.961264 AATCGATAGTCTTACTGTATATCCTCA 57.039 33.333 0.00 0.00 37.40 3.86
3219 3665 7.281098 AGTCTTACTGTATATCCTCAACTCGA 58.719 38.462 0.00 0.00 0.00 4.04
3315 3761 4.933400 TCGTATCTTGGTCCACTTTAAAGC 59.067 41.667 15.24 0.00 0.00 3.51
3337 3783 6.919662 AAGCACAGTTGTGTTTATTCTCATTG 59.080 34.615 11.84 0.00 45.43 2.82
3357 3803 4.412796 TGTAATCTTGCTGAGCATAGCT 57.587 40.909 8.44 0.00 44.01 3.32
3601 4048 2.040947 TGGTCCATGTTCAACAGGCATA 59.959 45.455 0.00 0.00 0.00 3.14
3637 4084 2.358582 TGCTGTTGACAAATCACAGGTG 59.641 45.455 7.04 0.00 35.87 4.00
3651 4098 9.368674 CAAATCACAGGTGCAATATTTTTATCA 57.631 29.630 0.00 0.00 0.00 2.15
3917 4365 9.677567 TTCAACAAAGACTAGCAATATTGTTTC 57.322 29.630 16.61 6.60 38.52 2.78
3918 4366 9.066892 TCAACAAAGACTAGCAATATTGTTTCT 57.933 29.630 16.61 8.69 38.52 2.52
3919 4367 9.683069 CAACAAAGACTAGCAATATTGTTTCTT 57.317 29.630 16.61 13.63 38.52 2.52
3976 4431 9.169592 TCCTATTTAAATCTTAAAAGTGGTCGG 57.830 33.333 3.39 0.00 0.00 4.79
3977 4432 9.169592 CCTATTTAAATCTTAAAAGTGGTCGGA 57.830 33.333 3.39 0.00 0.00 4.55
3978 4433 9.983804 CTATTTAAATCTTAAAAGTGGTCGGAC 57.016 33.333 3.39 0.00 0.00 4.79
3979 4434 6.806388 TTAAATCTTAAAAGTGGTCGGACC 57.194 37.500 20.36 20.36 39.22 4.46
3980 4435 2.845363 TCTTAAAAGTGGTCGGACCC 57.155 50.000 23.81 14.91 37.50 4.46
3981 4436 2.332117 TCTTAAAAGTGGTCGGACCCT 58.668 47.619 23.81 16.82 37.50 4.34
3982 4437 2.707257 TCTTAAAAGTGGTCGGACCCTT 59.293 45.455 23.81 21.08 37.50 3.95
3983 4438 2.845363 TAAAAGTGGTCGGACCCTTC 57.155 50.000 23.81 13.97 37.50 3.46
3984 4439 0.109913 AAAAGTGGTCGGACCCTTCC 59.890 55.000 23.81 9.51 37.50 3.46
3985 4440 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3986 4441 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
3987 4442 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
3988 4443 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
3989 4444 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
3990 4445 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
3991 4446 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
3992 4447 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3993 4448 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3994 4449 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3995 4450 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3996 4451 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3997 4452 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
4020 4475 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
4021 4476 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
4022 4477 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
4023 4478 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
4024 4479 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
4025 4480 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
4027 4482 4.488136 CATGCACCGGGCTGCCTA 62.488 66.667 19.68 0.00 45.15 3.93
4028 4483 3.492353 ATGCACCGGGCTGCCTAT 61.492 61.111 19.68 1.00 45.15 2.57
4029 4484 3.060614 ATGCACCGGGCTGCCTATT 62.061 57.895 19.68 0.00 45.15 1.73
4030 4485 2.440247 GCACCGGGCTGCCTATTT 60.440 61.111 19.68 0.00 40.25 1.40
4031 4486 1.153046 GCACCGGGCTGCCTATTTA 60.153 57.895 19.68 0.00 40.25 1.40
4032 4487 0.750182 GCACCGGGCTGCCTATTTAA 60.750 55.000 19.68 0.00 40.25 1.52
4033 4488 1.757682 CACCGGGCTGCCTATTTAAA 58.242 50.000 19.68 0.00 0.00 1.52
4173 4633 8.173542 ACACTTTGTCGTTTTATTAAATCCCT 57.826 30.769 0.00 0.00 0.00 4.20
4260 4721 7.067532 TGCTTATTCAGTATTTGTAACGGTG 57.932 36.000 0.00 0.00 0.00 4.94
4372 4833 5.400485 GCATTGCATTAGCTTAATTTCCTCG 59.600 40.000 3.15 0.00 42.74 4.63
4474 4935 3.368427 CCTGCTTACGGAGTTTGATGAGA 60.368 47.826 0.00 0.00 37.78 3.27
4569 5030 4.404507 TTCTGCAAGTTTTATGACGAGC 57.595 40.909 0.00 0.00 33.76 5.03
4624 5085 8.716646 ATATTTTAACAAGTTTTATGCCAGCC 57.283 30.769 0.00 0.00 0.00 4.85
4625 5086 2.723124 AACAAGTTTTATGCCAGCCG 57.277 45.000 0.00 0.00 0.00 5.52
4626 5087 0.887933 ACAAGTTTTATGCCAGCCGG 59.112 50.000 0.00 0.00 0.00 6.13
4627 5088 0.887933 CAAGTTTTATGCCAGCCGGT 59.112 50.000 1.90 0.00 33.28 5.28
4628 5089 1.272212 CAAGTTTTATGCCAGCCGGTT 59.728 47.619 1.90 0.00 33.28 4.44
4629 5090 0.887933 AGTTTTATGCCAGCCGGTTG 59.112 50.000 11.98 11.98 33.28 3.77
4630 5091 0.601057 GTTTTATGCCAGCCGGTTGT 59.399 50.000 17.69 1.06 33.28 3.32
4631 5092 0.600557 TTTTATGCCAGCCGGTTGTG 59.399 50.000 17.69 9.73 33.28 3.33
4632 5093 1.247419 TTTATGCCAGCCGGTTGTGG 61.247 55.000 17.69 15.43 36.85 4.17
4642 5103 2.595124 CCGGTTGTGGCTTTTCTTTT 57.405 45.000 0.00 0.00 0.00 2.27
4643 5104 2.200899 CCGGTTGTGGCTTTTCTTTTG 58.799 47.619 0.00 0.00 0.00 2.44
4644 5105 2.200899 CGGTTGTGGCTTTTCTTTTGG 58.799 47.619 0.00 0.00 0.00 3.28
4645 5106 1.939934 GGTTGTGGCTTTTCTTTTGGC 59.060 47.619 0.00 0.00 0.00 4.52
4646 5107 2.419990 GGTTGTGGCTTTTCTTTTGGCT 60.420 45.455 0.00 0.00 0.00 4.75
4647 5108 3.181470 GGTTGTGGCTTTTCTTTTGGCTA 60.181 43.478 0.00 0.00 0.00 3.93
4648 5109 4.051237 GTTGTGGCTTTTCTTTTGGCTAG 58.949 43.478 0.00 0.00 0.00 3.42
4649 5110 3.295973 TGTGGCTTTTCTTTTGGCTAGT 58.704 40.909 0.00 0.00 0.00 2.57
4650 5111 3.704061 TGTGGCTTTTCTTTTGGCTAGTT 59.296 39.130 0.00 0.00 0.00 2.24
4651 5112 4.161377 TGTGGCTTTTCTTTTGGCTAGTTT 59.839 37.500 0.00 0.00 0.00 2.66
4652 5113 5.116180 GTGGCTTTTCTTTTGGCTAGTTTT 58.884 37.500 0.00 0.00 0.00 2.43
4653 5114 5.006649 GTGGCTTTTCTTTTGGCTAGTTTTG 59.993 40.000 0.00 0.00 0.00 2.44
4654 5115 5.116180 GGCTTTTCTTTTGGCTAGTTTTGT 58.884 37.500 0.00 0.00 0.00 2.83
4655 5116 5.584649 GGCTTTTCTTTTGGCTAGTTTTGTT 59.415 36.000 0.00 0.00 0.00 2.83
4656 5117 6.093495 GGCTTTTCTTTTGGCTAGTTTTGTTT 59.907 34.615 0.00 0.00 0.00 2.83
4657 5118 7.361713 GGCTTTTCTTTTGGCTAGTTTTGTTTT 60.362 33.333 0.00 0.00 0.00 2.43
4658 5119 8.020819 GCTTTTCTTTTGGCTAGTTTTGTTTTT 58.979 29.630 0.00 0.00 0.00 1.94
4659 5120 9.328721 CTTTTCTTTTGGCTAGTTTTGTTTTTG 57.671 29.630 0.00 0.00 0.00 2.44
4660 5121 6.976636 TCTTTTGGCTAGTTTTGTTTTTGG 57.023 33.333 0.00 0.00 0.00 3.28
4661 5122 5.352846 TCTTTTGGCTAGTTTTGTTTTTGGC 59.647 36.000 0.00 0.00 0.00 4.52
4662 5123 3.186702 TGGCTAGTTTTGTTTTTGGCC 57.813 42.857 0.00 0.00 38.87 5.36
4663 5124 2.769095 TGGCTAGTTTTGTTTTTGGCCT 59.231 40.909 3.32 0.00 39.12 5.19
4664 5125 3.198853 TGGCTAGTTTTGTTTTTGGCCTT 59.801 39.130 3.32 0.00 39.12 4.35
4665 5126 4.196193 GGCTAGTTTTGTTTTTGGCCTTT 58.804 39.130 3.32 0.00 35.92 3.11
4666 5127 4.638421 GGCTAGTTTTGTTTTTGGCCTTTT 59.362 37.500 3.32 0.00 35.92 2.27
4667 5128 5.448496 GGCTAGTTTTGTTTTTGGCCTTTTG 60.448 40.000 3.32 0.00 35.92 2.44
4668 5129 5.448496 GCTAGTTTTGTTTTTGGCCTTTTGG 60.448 40.000 3.32 0.00 44.18 3.28
4691 5152 5.363979 CTCTTTGTGAGCTTTCCTTTACC 57.636 43.478 0.00 0.00 35.84 2.85
4692 5153 5.048846 TCTTTGTGAGCTTTCCTTTACCT 57.951 39.130 0.00 0.00 0.00 3.08
4693 5154 5.445964 TCTTTGTGAGCTTTCCTTTACCTT 58.554 37.500 0.00 0.00 0.00 3.50
4694 5155 5.531287 TCTTTGTGAGCTTTCCTTTACCTTC 59.469 40.000 0.00 0.00 0.00 3.46
4695 5156 3.399330 TGTGAGCTTTCCTTTACCTTCG 58.601 45.455 0.00 0.00 0.00 3.79
4696 5157 3.181458 TGTGAGCTTTCCTTTACCTTCGT 60.181 43.478 0.00 0.00 0.00 3.85
4697 5158 3.813724 GTGAGCTTTCCTTTACCTTCGTT 59.186 43.478 0.00 0.00 0.00 3.85
4698 5159 4.062991 TGAGCTTTCCTTTACCTTCGTTC 58.937 43.478 0.00 0.00 0.00 3.95
4699 5160 3.064931 AGCTTTCCTTTACCTTCGTTCG 58.935 45.455 0.00 0.00 0.00 3.95
4700 5161 3.062042 GCTTTCCTTTACCTTCGTTCGA 58.938 45.455 0.00 0.00 0.00 3.71
4701 5162 3.123116 GCTTTCCTTTACCTTCGTTCGAG 59.877 47.826 0.00 0.00 0.00 4.04
4702 5163 4.553323 CTTTCCTTTACCTTCGTTCGAGA 58.447 43.478 0.00 0.00 0.00 4.04
4703 5164 3.565905 TCCTTTACCTTCGTTCGAGAC 57.434 47.619 0.00 0.00 0.00 3.36
4704 5165 3.152341 TCCTTTACCTTCGTTCGAGACT 58.848 45.455 0.00 0.00 0.00 3.24
4705 5166 3.571401 TCCTTTACCTTCGTTCGAGACTT 59.429 43.478 0.00 0.00 0.00 3.01
4706 5167 4.038402 TCCTTTACCTTCGTTCGAGACTTT 59.962 41.667 0.00 0.00 0.00 2.66
4707 5168 5.241506 TCCTTTACCTTCGTTCGAGACTTTA 59.758 40.000 0.00 0.00 0.00 1.85
4708 5169 5.922544 CCTTTACCTTCGTTCGAGACTTTAA 59.077 40.000 0.00 0.00 0.00 1.52
4709 5170 6.089150 CCTTTACCTTCGTTCGAGACTTTAAG 59.911 42.308 0.00 0.00 0.00 1.85
4710 5171 4.843220 ACCTTCGTTCGAGACTTTAAGA 57.157 40.909 0.00 0.00 0.00 2.10
4711 5172 4.544651 ACCTTCGTTCGAGACTTTAAGAC 58.455 43.478 0.00 0.00 0.00 3.01
4712 5173 4.277921 ACCTTCGTTCGAGACTTTAAGACT 59.722 41.667 0.00 0.00 0.00 3.24
4713 5174 5.221130 CCTTCGTTCGAGACTTTAAGACTT 58.779 41.667 0.00 0.00 0.00 3.01
4714 5175 5.690857 CCTTCGTTCGAGACTTTAAGACTTT 59.309 40.000 0.00 0.00 0.00 2.66
4715 5176 6.345882 CCTTCGTTCGAGACTTTAAGACTTTG 60.346 42.308 0.00 0.00 0.00 2.77
4716 5177 5.585390 TCGTTCGAGACTTTAAGACTTTGT 58.415 37.500 0.00 0.00 0.00 2.83
4717 5178 6.038356 TCGTTCGAGACTTTAAGACTTTGTT 58.962 36.000 0.00 0.00 0.00 2.83
4718 5179 6.020121 TCGTTCGAGACTTTAAGACTTTGTTG 60.020 38.462 0.00 0.00 0.00 3.33
4719 5180 6.020121 CGTTCGAGACTTTAAGACTTTGTTGA 60.020 38.462 0.00 0.00 0.00 3.18
4720 5181 7.463648 CGTTCGAGACTTTAAGACTTTGTTGAA 60.464 37.037 0.00 0.00 0.00 2.69
4721 5182 7.230466 TCGAGACTTTAAGACTTTGTTGAAC 57.770 36.000 0.00 0.00 0.00 3.18
4722 5183 6.257193 TCGAGACTTTAAGACTTTGTTGAACC 59.743 38.462 0.00 0.00 0.00 3.62
4723 5184 6.258068 CGAGACTTTAAGACTTTGTTGAACCT 59.742 38.462 0.00 0.00 0.00 3.50
4724 5185 7.201617 CGAGACTTTAAGACTTTGTTGAACCTT 60.202 37.037 0.00 0.00 0.00 3.50
4725 5186 8.349568 AGACTTTAAGACTTTGTTGAACCTTT 57.650 30.769 0.00 0.00 0.00 3.11
4726 5187 8.803235 AGACTTTAAGACTTTGTTGAACCTTTT 58.197 29.630 0.00 0.00 0.00 2.27
4727 5188 9.419297 GACTTTAAGACTTTGTTGAACCTTTTT 57.581 29.630 0.00 0.00 0.00 1.94
4728 5189 9.203421 ACTTTAAGACTTTGTTGAACCTTTTTG 57.797 29.630 0.00 0.00 0.00 2.44
4729 5190 7.589574 TTAAGACTTTGTTGAACCTTTTTGC 57.410 32.000 0.00 0.00 0.00 3.68
4730 5191 5.405935 AGACTTTGTTGAACCTTTTTGCT 57.594 34.783 0.00 0.00 0.00 3.91
4731 5192 5.793817 AGACTTTGTTGAACCTTTTTGCTT 58.206 33.333 0.00 0.00 0.00 3.91
4732 5193 6.930731 AGACTTTGTTGAACCTTTTTGCTTA 58.069 32.000 0.00 0.00 0.00 3.09
4733 5194 7.555965 AGACTTTGTTGAACCTTTTTGCTTAT 58.444 30.769 0.00 0.00 0.00 1.73
4734 5195 7.706607 AGACTTTGTTGAACCTTTTTGCTTATC 59.293 33.333 0.00 0.00 0.00 1.75
4735 5196 7.555965 ACTTTGTTGAACCTTTTTGCTTATCT 58.444 30.769 0.00 0.00 0.00 1.98
4736 5197 8.691797 ACTTTGTTGAACCTTTTTGCTTATCTA 58.308 29.630 0.00 0.00 0.00 1.98
4737 5198 9.696917 CTTTGTTGAACCTTTTTGCTTATCTAT 57.303 29.630 0.00 0.00 0.00 1.98
4746 5207 8.251026 ACCTTTTTGCTTATCTATAAAGTTGGC 58.749 33.333 0.00 0.00 0.00 4.52
4747 5208 7.706607 CCTTTTTGCTTATCTATAAAGTTGGCC 59.293 37.037 0.00 0.00 0.00 5.36
4748 5209 6.371809 TTTGCTTATCTATAAAGTTGGCCG 57.628 37.500 0.00 0.00 0.00 6.13
4749 5210 5.031066 TGCTTATCTATAAAGTTGGCCGT 57.969 39.130 0.00 0.00 0.00 5.68
4750 5211 6.164417 TGCTTATCTATAAAGTTGGCCGTA 57.836 37.500 0.00 0.00 0.00 4.02
4751 5212 6.765403 TGCTTATCTATAAAGTTGGCCGTAT 58.235 36.000 0.00 0.00 0.00 3.06
4752 5213 6.649141 TGCTTATCTATAAAGTTGGCCGTATG 59.351 38.462 0.00 0.00 0.00 2.39
4753 5214 6.402226 GCTTATCTATAAAGTTGGCCGTATGC 60.402 42.308 0.00 0.00 40.16 3.14
4754 5215 4.409718 TCTATAAAGTTGGCCGTATGCA 57.590 40.909 0.00 0.00 43.89 3.96
4755 5216 4.968259 TCTATAAAGTTGGCCGTATGCAT 58.032 39.130 3.79 3.79 43.89 3.96
4756 5217 4.994852 TCTATAAAGTTGGCCGTATGCATC 59.005 41.667 0.19 0.00 43.89 3.91
4757 5218 0.732571 AAAGTTGGCCGTATGCATCG 59.267 50.000 0.19 7.03 43.89 3.84
4758 5219 0.107897 AAGTTGGCCGTATGCATCGA 60.108 50.000 16.69 0.00 43.89 3.59
4759 5220 0.106708 AGTTGGCCGTATGCATCGAT 59.893 50.000 16.69 0.00 43.89 3.59
4760 5221 0.512952 GTTGGCCGTATGCATCGATC 59.487 55.000 16.69 10.27 43.89 3.69
4761 5222 0.392706 TTGGCCGTATGCATCGATCT 59.607 50.000 16.69 0.00 43.89 2.75
4762 5223 0.319813 TGGCCGTATGCATCGATCTG 60.320 55.000 16.69 0.00 43.89 2.90
4763 5224 0.038251 GGCCGTATGCATCGATCTGA 60.038 55.000 16.69 0.00 43.89 3.27
4764 5225 1.404717 GGCCGTATGCATCGATCTGAT 60.405 52.381 16.69 0.00 43.89 2.90
4772 5233 3.910817 ATCGATCTGATGCAGAGGC 57.089 52.632 0.00 0.00 44.08 4.70
4773 5234 0.321021 ATCGATCTGATGCAGAGGCC 59.679 55.000 0.00 0.00 44.08 5.19
4774 5235 1.664017 CGATCTGATGCAGAGGCCG 60.664 63.158 0.00 3.49 44.08 6.13
4775 5236 1.301558 GATCTGATGCAGAGGCCGG 60.302 63.158 0.00 0.00 44.08 6.13
4776 5237 2.728443 GATCTGATGCAGAGGCCGGG 62.728 65.000 2.18 0.00 44.08 5.73
4777 5238 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
4779 5240 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
4910 5371 2.552373 GGTACCTTGCAGCTTGTAACCT 60.552 50.000 4.06 0.00 0.00 3.50
4948 5410 4.870363 ACTTCATGTTGCACATTTGTACC 58.130 39.130 0.00 0.00 36.53 3.34
5293 5802 9.377383 CAAAAACGTCTTACATTAAGTAACAGG 57.623 33.333 0.00 0.00 37.77 4.00
5314 5823 6.068498 ACAGGGGGAGTATCAATTTTCCATAA 60.068 38.462 0.00 0.00 36.25 1.90
5380 5889 3.349927 TGGCAGTTCCATCATCTTCTTG 58.650 45.455 0.00 0.00 40.72 3.02
5461 5970 1.896660 GACCGGAGCAAAACTGGCA 60.897 57.895 9.46 0.00 37.30 4.92
5477 5986 3.769300 ACTGGCAAGGGATCATTAAAACC 59.231 43.478 0.00 0.00 0.00 3.27
5513 6022 0.036952 ACGCACATCAACTCCCTCTG 60.037 55.000 0.00 0.00 0.00 3.35
5524 6033 2.192443 CCCTCTGGGCATCAGCAG 59.808 66.667 1.88 0.00 44.61 4.24
5543 6052 1.818959 GCAGGCAGCATTTTGGTGGA 61.819 55.000 8.58 0.00 45.26 4.02
5576 6085 3.431725 GCCAAAGAAGGACGGCGG 61.432 66.667 13.24 0.00 34.26 6.13
5801 6310 0.033796 ATGTTGGCCAGATGGTCCAG 60.034 55.000 5.11 0.00 40.60 3.86
6060 6569 2.584608 CCTTCCCGTGGCAGTAGG 59.415 66.667 0.00 0.00 0.00 3.18
6076 6585 1.798813 GTAGGTTTCAGTGGCTGTTCG 59.201 52.381 0.00 0.00 32.61 3.95
6088 6618 1.271102 GGCTGTTCGTGTCTCTTCTCT 59.729 52.381 0.00 0.00 0.00 3.10
6193 6723 7.899973 ACAAACTCAGCATAAATCAATTCCTT 58.100 30.769 0.00 0.00 0.00 3.36
6277 6807 7.610692 AGGATGAATTGTATCTGCTCCATATTG 59.389 37.037 0.00 0.00 0.00 1.90
6344 6874 3.304123 CGTTCAACGTTAAAATCCAGCCA 60.304 43.478 0.00 0.00 36.74 4.75
6401 6972 3.423154 CGGGCACTCGCTGGTTTC 61.423 66.667 0.00 0.00 38.60 2.78
6402 6973 2.281484 GGGCACTCGCTGGTTTCA 60.281 61.111 0.00 0.00 38.60 2.69
6403 6974 1.675641 GGGCACTCGCTGGTTTCAT 60.676 57.895 0.00 0.00 38.60 2.57
6405 6976 0.598065 GGCACTCGCTGGTTTCATTT 59.402 50.000 0.00 0.00 38.60 2.32
6540 7133 8.191446 GGCGTTCATATATTAAGCAGAGAGATA 58.809 37.037 5.35 0.00 0.00 1.98
6587 7180 5.473504 AGTGATCATGGTGGTTTACAAGAAC 59.526 40.000 0.00 0.00 0.00 3.01
6588 7181 4.454161 TGATCATGGTGGTTTACAAGAACG 59.546 41.667 0.00 0.00 0.00 3.95
6589 7182 2.550606 TCATGGTGGTTTACAAGAACGC 59.449 45.455 0.00 0.00 0.00 4.84
6592 7185 0.236449 GTGGTTTACAAGAACGCGGG 59.764 55.000 12.47 0.00 0.00 6.13
6594 7187 1.579964 GGTTTACAAGAACGCGGGGG 61.580 60.000 12.47 0.00 0.00 5.40
6595 7188 1.967494 TTTACAAGAACGCGGGGGC 60.967 57.895 12.47 0.00 0.00 5.80
6596 7189 2.677765 TTTACAAGAACGCGGGGGCA 62.678 55.000 12.47 0.00 0.00 5.36
6597 7190 3.887335 TACAAGAACGCGGGGGCAC 62.887 63.158 12.47 0.00 0.00 5.01
6663 7273 1.837051 ACCCAGCGGTGTCTCAAGA 60.837 57.895 14.40 0.00 42.48 3.02
6664 7274 1.194781 ACCCAGCGGTGTCTCAAGAT 61.195 55.000 14.40 0.00 42.48 2.40
6740 7350 0.110295 TTGCAGACTTGGCTTGCCTA 59.890 50.000 13.18 4.37 0.00 3.93
6768 7378 3.442273 TGAAAGTGCGGTTGTTTCTTTCT 59.558 39.130 14.12 0.00 42.19 2.52
6792 7402 0.818445 AGATGTGCCATGCAGCTAGC 60.818 55.000 6.62 6.62 40.08 3.42
6807 7417 4.612712 GCAGCTAGCAACATTGTCGTTTTA 60.613 41.667 18.83 0.00 44.79 1.52
6816 7426 6.470877 GCAACATTGTCGTTTTAAGTTTCTCA 59.529 34.615 0.00 0.00 0.00 3.27
6817 7427 7.167468 GCAACATTGTCGTTTTAAGTTTCTCAT 59.833 33.333 0.00 0.00 0.00 2.90
6896 7506 7.174946 GGAGGTGTCATCTATGTTTTCTGAAAA 59.825 37.037 11.33 11.33 0.00 2.29
6900 7510 8.993121 GTGTCATCTATGTTTTCTGAAAAGAGA 58.007 33.333 15.39 16.66 0.00 3.10
7002 7612 2.963101 TGAGGTCTCCAAGTTTCTTCGA 59.037 45.455 0.00 0.00 0.00 3.71
7039 7649 1.358152 TCCGTTTTCCCATCCTCTGT 58.642 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.348605 TTCCTTGTTTGGCAGTGCGC 62.349 55.000 9.45 0.00 41.28 6.09
62 63 2.351726 CCCACGCATCACTAAAGCTAAC 59.648 50.000 0.00 0.00 0.00 2.34
96 97 1.830279 TCCTTTCTGCATGCCTGAAG 58.170 50.000 16.68 14.92 33.67 3.02
137 138 2.367202 TGCCCTAGCAGGTGGTAGC 61.367 63.158 10.18 2.76 46.52 3.58
138 139 4.050313 TGCCCTAGCAGGTGGTAG 57.950 61.111 8.90 8.90 46.52 3.18
206 210 1.327303 TTCGATTTGGCCAAGTGCTT 58.673 45.000 19.46 2.43 40.92 3.91
221 225 9.320352 TCGTCTGATTTTATAAATGGAATTCGA 57.680 29.630 0.00 0.00 33.67 3.71
222 226 9.586150 CTCGTCTGATTTTATAAATGGAATTCG 57.414 33.333 0.00 0.89 33.67 3.34
225 229 8.765219 CGTCTCGTCTGATTTTATAAATGGAAT 58.235 33.333 0.00 0.00 0.00 3.01
339 349 1.819288 TGGTTTCGTTTGGTTTCAGCA 59.181 42.857 0.00 0.00 0.00 4.41
470 486 2.370189 GAGAGAGGGAGAGAGAGAGAGG 59.630 59.091 0.00 0.00 0.00 3.69
473 489 3.312890 AGAGAGAGAGGGAGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
474 490 3.421394 AGAGAGAGAGGGAGAGAGAGA 57.579 52.381 0.00 0.00 0.00 3.10
475 491 3.580458 CCTAGAGAGAGAGGGAGAGAGAG 59.420 56.522 0.00 0.00 0.00 3.20
476 492 3.051341 ACCTAGAGAGAGAGGGAGAGAGA 60.051 52.174 0.00 0.00 37.14 3.10
477 493 3.071602 CACCTAGAGAGAGAGGGAGAGAG 59.928 56.522 0.00 0.00 37.14 3.20
478 494 3.045634 CACCTAGAGAGAGAGGGAGAGA 58.954 54.545 0.00 0.00 37.14 3.10
479 495 2.487265 GCACCTAGAGAGAGAGGGAGAG 60.487 59.091 0.00 0.00 37.14 3.20
480 496 1.493022 GCACCTAGAGAGAGAGGGAGA 59.507 57.143 0.00 0.00 37.14 3.71
481 497 1.214175 TGCACCTAGAGAGAGAGGGAG 59.786 57.143 0.00 0.00 37.14 4.30
482 498 1.299939 TGCACCTAGAGAGAGAGGGA 58.700 55.000 0.00 0.00 37.14 4.20
483 499 2.031120 CTTGCACCTAGAGAGAGAGGG 58.969 57.143 0.00 0.00 37.14 4.30
484 500 2.733956 ACTTGCACCTAGAGAGAGAGG 58.266 52.381 0.00 0.00 38.92 3.69
492 508 5.048224 GTCAGTACAAGTACTTGCACCTAGA 60.048 44.000 30.97 22.58 43.35 2.43
495 511 3.386726 TGTCAGTACAAGTACTTGCACCT 59.613 43.478 30.97 21.50 43.35 4.00
520 536 0.174162 CAATACAAGCAAGCTGGGGC 59.826 55.000 0.93 0.00 39.06 5.80
525 541 1.273327 GGGCAACAATACAAGCAAGCT 59.727 47.619 0.00 0.00 39.74 3.74
591 607 2.830285 GCGGAGAGAGACGGAGCTC 61.830 68.421 4.71 4.71 35.11 4.09
592 608 2.826738 GCGGAGAGAGACGGAGCT 60.827 66.667 0.00 0.00 0.00 4.09
701 721 0.752376 AGTACCGTCTCTAGGCTGCC 60.752 60.000 11.65 11.65 0.00 4.85
703 723 0.382515 GCAGTACCGTCTCTAGGCTG 59.617 60.000 0.00 0.00 0.00 4.85
756 779 2.203126 CTCTCATTCCGGGCTGCC 60.203 66.667 11.05 11.05 0.00 4.85
762 785 1.690219 CCCTGTCCCTCTCATTCCGG 61.690 65.000 0.00 0.00 0.00 5.14
805 828 4.090057 GAGCTTGTGCGTTCGGGC 62.090 66.667 0.00 0.00 45.42 6.13
813 836 2.675056 CGCTGTCTGGAGCTTGTGC 61.675 63.158 0.00 0.00 36.77 4.57
856 879 0.105778 GCTCTCCCTTTCATCTCCCG 59.894 60.000 0.00 0.00 0.00 5.14
915 938 2.886604 GCTCAGCTCAGCTCAGCG 60.887 66.667 6.85 0.00 43.62 5.18
1451 1496 0.894141 TGGAATTGGCGGGTGAAATG 59.106 50.000 0.00 0.00 0.00 2.32
1519 1564 3.065655 GGGAGCGAAGAGAATGATGATG 58.934 50.000 0.00 0.00 0.00 3.07
1612 1685 1.000385 CAGGCCGAATTGTGCTCAAAA 60.000 47.619 5.15 0.00 37.11 2.44
1703 1776 5.163519 GGTAACACAAGCTGCCATGATAAAT 60.164 40.000 9.67 0.00 0.00 1.40
1762 1838 3.305361 GCGTAAAAGCGGTAGTAGGAAAG 59.695 47.826 0.00 0.00 0.00 2.62
1763 1839 3.056607 AGCGTAAAAGCGGTAGTAGGAAA 60.057 43.478 0.00 0.00 40.97 3.13
1764 1840 2.493278 AGCGTAAAAGCGGTAGTAGGAA 59.507 45.455 0.00 0.00 40.97 3.36
1765 1841 2.094675 AGCGTAAAAGCGGTAGTAGGA 58.905 47.619 0.00 0.00 40.97 2.94
1924 2000 2.877168 CAGATGGAGAGCAAATGTAGCC 59.123 50.000 0.00 0.00 0.00 3.93
2132 2214 2.561956 ATATCAGGCGTCCGTCCGG 61.562 63.158 0.00 0.00 0.00 5.14
2204 2286 2.956987 CGGCCAGGAAAGCACAAG 59.043 61.111 2.24 0.00 0.00 3.16
2265 2360 0.324943 GCCGGATATACCTGCCATGT 59.675 55.000 5.05 0.00 41.93 3.21
2290 2385 3.940640 CCGCCGCGTGATGAATGG 61.941 66.667 12.58 0.00 0.00 3.16
2341 2436 1.551883 AGCATGGCCTTTTCCATTGAC 59.448 47.619 3.32 0.00 44.04 3.18
2346 2441 2.446435 GAGTTAGCATGGCCTTTTCCA 58.554 47.619 3.32 0.00 40.97 3.53
2356 2451 4.487714 TCTAGGTTTGGGAGTTAGCATG 57.512 45.455 0.00 0.00 0.00 4.06
2391 2486 6.151663 TGCAGAGTAAACACTTGTGTAGTA 57.848 37.500 6.84 0.68 34.56 1.82
2437 2532 1.962822 ATCCACACTGCACGCACAG 60.963 57.895 3.86 3.86 43.59 3.66
2438 2533 2.110835 ATCCACACTGCACGCACA 59.889 55.556 0.00 0.00 0.00 4.57
2439 2534 1.960763 TCATCCACACTGCACGCAC 60.961 57.895 0.00 0.00 0.00 5.34
2440 2535 1.960763 GTCATCCACACTGCACGCA 60.961 57.895 0.00 0.00 0.00 5.24
2441 2536 1.630244 GAGTCATCCACACTGCACGC 61.630 60.000 0.00 0.00 0.00 5.34
2442 2537 1.347097 CGAGTCATCCACACTGCACG 61.347 60.000 0.00 0.00 0.00 5.34
2444 2539 0.244721 CTCGAGTCATCCACACTGCA 59.755 55.000 3.62 0.00 0.00 4.41
2445 2540 1.080995 GCTCGAGTCATCCACACTGC 61.081 60.000 15.13 0.00 0.00 4.40
2446 2541 0.459237 GGCTCGAGTCATCCACACTG 60.459 60.000 13.26 0.00 0.00 3.66
2576 2702 7.607250 ACCATTTATATTTTTGCGGAAGTTGA 58.393 30.769 0.00 0.00 0.00 3.18
2583 2709 5.689961 GGCACTACCATTTATATTTTTGCGG 59.310 40.000 0.00 0.00 38.86 5.69
2626 2792 6.970613 GGTTGGTGTCGCCTTTTAATATTTAG 59.029 38.462 3.62 0.00 38.35 1.85
2660 2826 3.046390 GTCAACCGAATCGCTAGATCAG 58.954 50.000 0.00 0.00 35.74 2.90
2669 2835 0.298707 CATGCTCGTCAACCGAATCG 59.701 55.000 0.00 0.00 46.75 3.34
2681 2847 5.754406 AGAGATCTCATTTTTCTCATGCTCG 59.246 40.000 24.39 0.00 38.67 5.03
2874 3318 1.474648 CTGATGACGACCGCACGATG 61.475 60.000 6.49 0.00 37.03 3.84
3153 3599 8.597167 TGAAAAATGGAGAACTGAATCTCTCTA 58.403 33.333 12.48 0.00 44.30 2.43
3213 3659 2.105821 TGGATGGTTCAGGTTTCGAGTT 59.894 45.455 0.00 0.00 0.00 3.01
3219 3665 6.731467 ACAATACTATGGATGGTTCAGGTTT 58.269 36.000 0.00 0.00 0.00 3.27
3293 3739 4.693566 TGCTTTAAAGTGGACCAAGATACG 59.306 41.667 16.38 0.00 0.00 3.06
3337 3783 3.497640 CCAGCTATGCTCAGCAAGATTAC 59.502 47.826 1.73 0.00 43.62 1.89
3357 3803 4.078571 AGGTAGAGGTCCATAGAATCACCA 60.079 45.833 0.00 0.00 0.00 4.17
3601 4048 5.922544 GTCAACAGCAGACAAAAATATTGCT 59.077 36.000 0.00 0.00 45.28 3.91
3631 4078 9.590451 CATCTTTGATAAAAATATTGCACCTGT 57.410 29.630 0.00 0.00 0.00 4.00
3637 4084 9.538508 AGCCTTCATCTTTGATAAAAATATTGC 57.461 29.630 0.00 0.00 0.00 3.56
3651 4098 1.844687 GCTTGGGAGCCTTCATCTTT 58.155 50.000 0.00 0.00 43.29 2.52
3819 4267 4.311520 TGCTCCTAGGTAGTTAGACACA 57.688 45.455 9.08 0.00 0.00 3.72
3858 4306 4.902448 AGGTATTCCTTGTCCTAGGATGAC 59.098 45.833 16.27 3.13 43.66 3.06
3961 4416 2.332117 AGGGTCCGACCACTTTTAAGA 58.668 47.619 19.43 0.00 41.02 2.10
3962 4417 2.853235 AGGGTCCGACCACTTTTAAG 57.147 50.000 19.43 0.00 41.02 1.85
3963 4418 2.224597 GGAAGGGTCCGACCACTTTTAA 60.225 50.000 19.43 0.00 41.02 1.52
3964 4419 1.348696 GGAAGGGTCCGACCACTTTTA 59.651 52.381 19.43 0.00 41.02 1.52
3965 4420 0.109913 GGAAGGGTCCGACCACTTTT 59.890 55.000 19.43 7.59 41.02 2.27
3966 4421 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3967 4422 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3968 4423 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3969 4424 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
3970 4425 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
3971 4426 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3972 4427 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3973 4428 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3974 4429 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3975 4430 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3976 4431 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3977 4432 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3978 4433 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
3979 4434 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
3980 4435 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
3992 4447 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3995 4450 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3996 4451 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3997 4452 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3998 4453 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
4004 4459 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
4005 4460 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
4006 4461 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
4007 4462 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
4008 4463 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
4010 4465 3.779850 ATAGGCAGCCCGGTGCATG 62.780 63.158 19.47 12.57 45.93 4.06
4011 4466 2.572333 AAATAGGCAGCCCGGTGCAT 62.572 55.000 19.47 15.39 45.93 3.96
4012 4467 1.916206 TAAATAGGCAGCCCGGTGCA 61.916 55.000 19.47 1.47 45.93 4.57
4013 4468 0.750182 TTAAATAGGCAGCCCGGTGC 60.750 55.000 8.22 10.35 43.19 5.01
4014 4469 1.757682 TTTAAATAGGCAGCCCGGTG 58.242 50.000 8.22 0.00 35.76 4.94
4015 4470 2.517998 TTTTAAATAGGCAGCCCGGT 57.482 45.000 8.22 0.00 35.76 5.28
4016 4471 3.222603 AGATTTTAAATAGGCAGCCCGG 58.777 45.455 8.22 0.00 35.76 5.73
4017 4472 4.918810 AAGATTTTAAATAGGCAGCCCG 57.081 40.909 8.22 0.00 35.76 6.13
4018 4473 6.961360 ACTAAGATTTTAAATAGGCAGCCC 57.039 37.500 8.22 0.00 0.00 5.19
4019 4474 6.697455 GCAACTAAGATTTTAAATAGGCAGCC 59.303 38.462 1.84 1.84 0.00 4.85
4020 4475 7.433425 CAGCAACTAAGATTTTAAATAGGCAGC 59.567 37.037 0.00 0.00 0.00 5.25
4021 4476 8.462016 ACAGCAACTAAGATTTTAAATAGGCAG 58.538 33.333 0.00 0.00 0.00 4.85
4022 4477 8.243426 CACAGCAACTAAGATTTTAAATAGGCA 58.757 33.333 0.00 0.00 0.00 4.75
4023 4478 8.244113 ACACAGCAACTAAGATTTTAAATAGGC 58.756 33.333 0.00 0.00 0.00 3.93
4064 4519 4.415150 CTGGGGTGTCATGCGCCT 62.415 66.667 4.18 0.00 46.69 5.52
4151 4606 9.685828 TGAAAGGGATTTAATAAAACGACAAAG 57.314 29.630 0.00 0.00 0.00 2.77
4163 4623 7.882755 TCCCAAGTATCTGAAAGGGATTTAAT 58.117 34.615 0.00 0.00 40.26 1.40
4255 4716 1.904287 TTCAAAAGCATAGCCACCGT 58.096 45.000 0.00 0.00 0.00 4.83
4260 4721 4.439289 CCAGCTACTTTCAAAAGCATAGCC 60.439 45.833 15.83 5.00 39.51 3.93
4313 4774 7.816945 ACTGTAATAACATGCTGAAATTTGC 57.183 32.000 0.00 0.00 34.37 3.68
4372 4833 7.552687 TGAAGGATTAATATCAGGTCACAACAC 59.447 37.037 0.00 0.00 32.09 3.32
4474 4935 1.873591 CTTTCTACAGCTGCGTTTGGT 59.126 47.619 15.27 0.00 0.00 3.67
4569 5030 7.138736 CAGTAGTGAAAATGTAACCTTGTTGG 58.861 38.462 0.00 0.00 42.93 3.77
4610 5071 0.887933 CAACCGGCTGGCATAAAACT 59.112 50.000 12.89 0.00 39.70 2.66
4611 5072 0.601057 ACAACCGGCTGGCATAAAAC 59.399 50.000 12.89 0.00 39.70 2.43
4612 5073 0.600557 CACAACCGGCTGGCATAAAA 59.399 50.000 12.89 0.00 39.70 1.52
4613 5074 1.247419 CCACAACCGGCTGGCATAAA 61.247 55.000 12.89 0.00 39.70 1.40
4614 5075 1.677300 CCACAACCGGCTGGCATAA 60.677 57.895 12.89 0.00 39.70 1.90
4615 5076 2.045438 CCACAACCGGCTGGCATA 60.045 61.111 12.89 0.00 39.70 3.14
4623 5084 2.200899 CAAAAGAAAAGCCACAACCGG 58.799 47.619 0.00 0.00 0.00 5.28
4624 5085 2.200899 CCAAAAGAAAAGCCACAACCG 58.799 47.619 0.00 0.00 0.00 4.44
4625 5086 1.939934 GCCAAAAGAAAAGCCACAACC 59.060 47.619 0.00 0.00 0.00 3.77
4626 5087 2.905075 AGCCAAAAGAAAAGCCACAAC 58.095 42.857 0.00 0.00 0.00 3.32
4627 5088 3.704061 ACTAGCCAAAAGAAAAGCCACAA 59.296 39.130 0.00 0.00 0.00 3.33
4628 5089 3.295973 ACTAGCCAAAAGAAAAGCCACA 58.704 40.909 0.00 0.00 0.00 4.17
4629 5090 4.322080 AACTAGCCAAAAGAAAAGCCAC 57.678 40.909 0.00 0.00 0.00 5.01
4630 5091 5.115480 CAAAACTAGCCAAAAGAAAAGCCA 58.885 37.500 0.00 0.00 0.00 4.75
4631 5092 5.116180 ACAAAACTAGCCAAAAGAAAAGCC 58.884 37.500 0.00 0.00 0.00 4.35
4632 5093 6.662414 AACAAAACTAGCCAAAAGAAAAGC 57.338 33.333 0.00 0.00 0.00 3.51
4633 5094 9.328721 CAAAAACAAAACTAGCCAAAAGAAAAG 57.671 29.630 0.00 0.00 0.00 2.27
4634 5095 8.293157 CCAAAAACAAAACTAGCCAAAAGAAAA 58.707 29.630 0.00 0.00 0.00 2.29
4635 5096 7.574030 GCCAAAAACAAAACTAGCCAAAAGAAA 60.574 33.333 0.00 0.00 0.00 2.52
4636 5097 6.128145 GCCAAAAACAAAACTAGCCAAAAGAA 60.128 34.615 0.00 0.00 0.00 2.52
4637 5098 5.352846 GCCAAAAACAAAACTAGCCAAAAGA 59.647 36.000 0.00 0.00 0.00 2.52
4638 5099 5.448496 GGCCAAAAACAAAACTAGCCAAAAG 60.448 40.000 0.00 0.00 39.01 2.27
4639 5100 4.396478 GGCCAAAAACAAAACTAGCCAAAA 59.604 37.500 0.00 0.00 39.01 2.44
4640 5101 3.942115 GGCCAAAAACAAAACTAGCCAAA 59.058 39.130 0.00 0.00 39.01 3.28
4641 5102 3.198853 AGGCCAAAAACAAAACTAGCCAA 59.801 39.130 5.01 0.00 41.69 4.52
4642 5103 2.769095 AGGCCAAAAACAAAACTAGCCA 59.231 40.909 5.01 0.00 41.69 4.75
4643 5104 3.469008 AGGCCAAAAACAAAACTAGCC 57.531 42.857 5.01 0.00 39.49 3.93
4644 5105 5.448496 CCAAAAGGCCAAAAACAAAACTAGC 60.448 40.000 5.01 0.00 0.00 3.42
4645 5106 5.448496 GCCAAAAGGCCAAAAACAAAACTAG 60.448 40.000 5.01 0.00 0.00 2.57
4646 5107 4.396478 GCCAAAAGGCCAAAAACAAAACTA 59.604 37.500 5.01 0.00 0.00 2.24
4647 5108 3.192422 GCCAAAAGGCCAAAAACAAAACT 59.808 39.130 5.01 0.00 0.00 2.66
4648 5109 3.192422 AGCCAAAAGGCCAAAAACAAAAC 59.808 39.130 5.01 0.00 35.12 2.43
4649 5110 3.425659 AGCCAAAAGGCCAAAAACAAAA 58.574 36.364 5.01 0.00 35.12 2.44
4650 5111 3.013219 GAGCCAAAAGGCCAAAAACAAA 58.987 40.909 5.01 0.00 35.12 2.83
4651 5112 2.238395 AGAGCCAAAAGGCCAAAAACAA 59.762 40.909 5.01 0.00 35.12 2.83
4652 5113 1.836802 AGAGCCAAAAGGCCAAAAACA 59.163 42.857 5.01 0.00 35.12 2.83
4653 5114 2.620251 AGAGCCAAAAGGCCAAAAAC 57.380 45.000 5.01 0.00 35.12 2.43
4654 5115 3.277715 CAAAGAGCCAAAAGGCCAAAAA 58.722 40.909 5.01 0.00 35.12 1.94
4655 5116 2.238395 ACAAAGAGCCAAAAGGCCAAAA 59.762 40.909 5.01 0.00 35.12 2.44
4656 5117 1.836802 ACAAAGAGCCAAAAGGCCAAA 59.163 42.857 5.01 0.00 35.12 3.28
4657 5118 1.138661 CACAAAGAGCCAAAAGGCCAA 59.861 47.619 5.01 0.00 35.12 4.52
4658 5119 0.752054 CACAAAGAGCCAAAAGGCCA 59.248 50.000 5.01 0.00 35.12 5.36
4659 5120 1.000171 CTCACAAAGAGCCAAAAGGCC 60.000 52.381 2.33 0.00 37.59 5.19
4660 5121 2.428888 CTCACAAAGAGCCAAAAGGC 57.571 50.000 0.00 0.00 37.59 4.35
4670 5131 5.048846 AGGTAAAGGAAAGCTCACAAAGA 57.951 39.130 0.00 0.00 0.00 2.52
4671 5132 5.560953 CGAAGGTAAAGGAAAGCTCACAAAG 60.561 44.000 0.00 0.00 0.00 2.77
4672 5133 4.274950 CGAAGGTAAAGGAAAGCTCACAAA 59.725 41.667 0.00 0.00 0.00 2.83
4673 5134 3.813166 CGAAGGTAAAGGAAAGCTCACAA 59.187 43.478 0.00 0.00 0.00 3.33
4674 5135 3.181458 ACGAAGGTAAAGGAAAGCTCACA 60.181 43.478 0.00 0.00 0.00 3.58
4675 5136 3.400255 ACGAAGGTAAAGGAAAGCTCAC 58.600 45.455 0.00 0.00 0.00 3.51
4676 5137 3.764237 ACGAAGGTAAAGGAAAGCTCA 57.236 42.857 0.00 0.00 0.00 4.26
4677 5138 3.123116 CGAACGAAGGTAAAGGAAAGCTC 59.877 47.826 0.00 0.00 0.00 4.09
4678 5139 3.064931 CGAACGAAGGTAAAGGAAAGCT 58.935 45.455 0.00 0.00 0.00 3.74
4679 5140 3.062042 TCGAACGAAGGTAAAGGAAAGC 58.938 45.455 0.00 0.00 0.00 3.51
4680 5141 4.385146 GTCTCGAACGAAGGTAAAGGAAAG 59.615 45.833 0.00 0.00 0.00 2.62
4681 5142 4.038402 AGTCTCGAACGAAGGTAAAGGAAA 59.962 41.667 0.00 0.00 0.00 3.13
4682 5143 3.571401 AGTCTCGAACGAAGGTAAAGGAA 59.429 43.478 0.00 0.00 0.00 3.36
4683 5144 3.152341 AGTCTCGAACGAAGGTAAAGGA 58.848 45.455 0.00 0.00 0.00 3.36
4684 5145 3.572604 AGTCTCGAACGAAGGTAAAGG 57.427 47.619 0.00 0.00 0.00 3.11
4685 5146 6.860023 TCTTAAAGTCTCGAACGAAGGTAAAG 59.140 38.462 0.00 0.00 0.00 1.85
4686 5147 6.638468 GTCTTAAAGTCTCGAACGAAGGTAAA 59.362 38.462 0.00 0.00 0.00 2.01
4687 5148 6.016777 AGTCTTAAAGTCTCGAACGAAGGTAA 60.017 38.462 0.00 0.00 0.00 2.85
4688 5149 5.471456 AGTCTTAAAGTCTCGAACGAAGGTA 59.529 40.000 0.00 0.00 0.00 3.08
4689 5150 4.277921 AGTCTTAAAGTCTCGAACGAAGGT 59.722 41.667 0.00 0.00 0.00 3.50
4690 5151 4.796369 AGTCTTAAAGTCTCGAACGAAGG 58.204 43.478 0.00 0.00 0.00 3.46
4691 5152 6.198591 ACAAAGTCTTAAAGTCTCGAACGAAG 59.801 38.462 0.00 0.00 0.00 3.79
4692 5153 6.038356 ACAAAGTCTTAAAGTCTCGAACGAA 58.962 36.000 0.00 0.00 0.00 3.85
4693 5154 5.585390 ACAAAGTCTTAAAGTCTCGAACGA 58.415 37.500 0.00 0.00 0.00 3.85
4694 5155 5.885020 ACAAAGTCTTAAAGTCTCGAACG 57.115 39.130 0.00 0.00 0.00 3.95
4695 5156 7.230466 TCAACAAAGTCTTAAAGTCTCGAAC 57.770 36.000 0.00 0.00 0.00 3.95
4696 5157 7.201582 GGTTCAACAAAGTCTTAAAGTCTCGAA 60.202 37.037 0.00 0.00 0.00 3.71
4697 5158 6.257193 GGTTCAACAAAGTCTTAAAGTCTCGA 59.743 38.462 0.00 0.00 0.00 4.04
4698 5159 6.258068 AGGTTCAACAAAGTCTTAAAGTCTCG 59.742 38.462 0.00 0.00 0.00 4.04
4699 5160 7.555306 AGGTTCAACAAAGTCTTAAAGTCTC 57.445 36.000 0.00 0.00 0.00 3.36
4700 5161 7.939784 AAGGTTCAACAAAGTCTTAAAGTCT 57.060 32.000 0.00 0.00 0.00 3.24
4701 5162 8.981724 AAAAGGTTCAACAAAGTCTTAAAGTC 57.018 30.769 0.00 0.00 0.00 3.01
4702 5163 9.203421 CAAAAAGGTTCAACAAAGTCTTAAAGT 57.797 29.630 0.00 0.00 0.00 2.66
4703 5164 8.168626 GCAAAAAGGTTCAACAAAGTCTTAAAG 58.831 33.333 0.00 0.00 0.00 1.85
4704 5165 7.875554 AGCAAAAAGGTTCAACAAAGTCTTAAA 59.124 29.630 0.00 0.00 0.00 1.52
4705 5166 7.382898 AGCAAAAAGGTTCAACAAAGTCTTAA 58.617 30.769 0.00 0.00 0.00 1.85
4706 5167 6.930731 AGCAAAAAGGTTCAACAAAGTCTTA 58.069 32.000 0.00 0.00 0.00 2.10
4707 5168 5.793817 AGCAAAAAGGTTCAACAAAGTCTT 58.206 33.333 0.00 0.00 0.00 3.01
4708 5169 5.405935 AGCAAAAAGGTTCAACAAAGTCT 57.594 34.783 0.00 0.00 0.00 3.24
4709 5170 7.706607 AGATAAGCAAAAAGGTTCAACAAAGTC 59.293 33.333 0.00 0.00 39.08 3.01
4710 5171 7.555965 AGATAAGCAAAAAGGTTCAACAAAGT 58.444 30.769 0.00 0.00 39.08 2.66
4711 5172 9.696917 ATAGATAAGCAAAAAGGTTCAACAAAG 57.303 29.630 0.00 0.00 39.08 2.77
4720 5181 8.251026 GCCAACTTTATAGATAAGCAAAAAGGT 58.749 33.333 0.00 0.00 0.00 3.50
4721 5182 7.706607 GGCCAACTTTATAGATAAGCAAAAAGG 59.293 37.037 0.00 0.00 0.00 3.11
4722 5183 7.432252 CGGCCAACTTTATAGATAAGCAAAAAG 59.568 37.037 2.24 0.00 0.00 2.27
4723 5184 7.094118 ACGGCCAACTTTATAGATAAGCAAAAA 60.094 33.333 2.24 0.00 0.00 1.94
4724 5185 6.376018 ACGGCCAACTTTATAGATAAGCAAAA 59.624 34.615 2.24 0.00 0.00 2.44
4725 5186 5.883673 ACGGCCAACTTTATAGATAAGCAAA 59.116 36.000 2.24 0.00 0.00 3.68
4726 5187 5.433526 ACGGCCAACTTTATAGATAAGCAA 58.566 37.500 2.24 0.00 0.00 3.91
4727 5188 5.031066 ACGGCCAACTTTATAGATAAGCA 57.969 39.130 2.24 0.00 0.00 3.91
4728 5189 6.402226 GCATACGGCCAACTTTATAGATAAGC 60.402 42.308 2.24 0.00 36.11 3.09
4729 5190 6.649141 TGCATACGGCCAACTTTATAGATAAG 59.351 38.462 2.24 0.00 43.89 1.73
4730 5191 6.526526 TGCATACGGCCAACTTTATAGATAA 58.473 36.000 2.24 0.00 43.89 1.75
4731 5192 6.104146 TGCATACGGCCAACTTTATAGATA 57.896 37.500 2.24 0.00 43.89 1.98
4732 5193 4.968259 TGCATACGGCCAACTTTATAGAT 58.032 39.130 2.24 0.00 43.89 1.98
4733 5194 4.409718 TGCATACGGCCAACTTTATAGA 57.590 40.909 2.24 0.00 43.89 1.98
4734 5195 4.143115 CGATGCATACGGCCAACTTTATAG 60.143 45.833 2.24 0.00 43.89 1.31
4735 5196 3.743911 CGATGCATACGGCCAACTTTATA 59.256 43.478 2.24 0.00 43.89 0.98
4736 5197 2.548057 CGATGCATACGGCCAACTTTAT 59.452 45.455 2.24 0.00 43.89 1.40
4737 5198 1.937223 CGATGCATACGGCCAACTTTA 59.063 47.619 2.24 0.00 43.89 1.85
4738 5199 0.732571 CGATGCATACGGCCAACTTT 59.267 50.000 2.24 0.00 43.89 2.66
4739 5200 0.107897 TCGATGCATACGGCCAACTT 60.108 50.000 2.24 0.00 43.89 2.66
4740 5201 0.106708 ATCGATGCATACGGCCAACT 59.893 50.000 2.24 0.00 43.89 3.16
4741 5202 0.512952 GATCGATGCATACGGCCAAC 59.487 55.000 0.54 0.00 43.89 3.77
4742 5203 0.392706 AGATCGATGCATACGGCCAA 59.607 50.000 0.54 0.00 43.89 4.52
4743 5204 0.319813 CAGATCGATGCATACGGCCA 60.320 55.000 0.54 0.00 43.89 5.36
4744 5205 0.038251 TCAGATCGATGCATACGGCC 60.038 55.000 0.54 0.00 43.89 6.13
4745 5206 1.657594 CATCAGATCGATGCATACGGC 59.342 52.381 0.54 9.84 44.95 5.68
4754 5215 0.321021 GGCCTCTGCATCAGATCGAT 59.679 55.000 0.00 0.00 39.92 3.59
4755 5216 1.744639 GGCCTCTGCATCAGATCGA 59.255 57.895 0.00 0.00 39.92 3.59
4756 5217 1.664017 CGGCCTCTGCATCAGATCG 60.664 63.158 0.00 0.00 39.92 3.69
4757 5218 1.301558 CCGGCCTCTGCATCAGATC 60.302 63.158 0.00 0.00 39.92 2.75
4758 5219 2.815945 CCCGGCCTCTGCATCAGAT 61.816 63.158 0.00 0.00 39.92 2.90
4759 5220 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
4760 5221 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
4762 5223 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
4910 5371 2.102578 GAAGTAACAGGCTACGGGGTA 58.897 52.381 0.00 0.00 0.00 3.69
4984 5446 6.698329 TGTTCGTTATGAATACTAATCCCACG 59.302 38.462 0.00 0.00 39.21 4.94
5052 5514 7.939039 TCATCCAACCTCCATGAATATTACTTC 59.061 37.037 0.00 0.00 0.00 3.01
5205 5670 6.065374 TGTTAAACATTTACTCTTGGCAGGA 58.935 36.000 0.00 0.00 0.00 3.86
5273 5782 5.105228 TCCCCCTGTTACTTAATGTAAGACG 60.105 44.000 2.11 0.00 41.29 4.18
5293 5802 6.295292 GGCATTATGGAAAATTGATACTCCCC 60.295 42.308 0.00 0.00 0.00 4.81
5314 5823 7.951347 ATGAGTAAATTCTTTCTTCAGGCAT 57.049 32.000 0.00 0.00 0.00 4.40
5360 5869 2.098770 GCAAGAAGATGATGGAACTGCC 59.901 50.000 0.00 0.00 37.10 4.85
5371 5880 3.947910 ATTGGTTGTGGCAAGAAGATG 57.052 42.857 0.00 0.00 0.00 2.90
5380 5889 3.110447 ACAATGTCAATTGGTTGTGGC 57.890 42.857 17.80 0.00 46.34 5.01
5461 5970 4.473559 TCTCCTCGGTTTTAATGATCCCTT 59.526 41.667 0.00 0.00 0.00 3.95
5477 5986 1.000496 GCGTAATAGGGGTTCTCCTCG 60.000 57.143 0.00 0.00 39.67 4.63
5524 6033 1.375013 CCACCAAAATGCTGCCTGC 60.375 57.895 0.00 0.00 43.25 4.85
5600 6109 1.883926 ACACCGGTGGCAAAGTTTATC 59.116 47.619 36.47 0.00 34.19 1.75
5801 6310 0.036732 TGGGGATGTGTTCAGTCTGC 59.963 55.000 0.00 0.00 0.00 4.26
5933 6442 3.671928 GCACATTGTTCAGTTGCTCATTC 59.328 43.478 0.00 0.00 0.00 2.67
6060 6569 1.003866 GACACGAACAGCCACTGAAAC 60.004 52.381 0.78 0.00 35.18 2.78
6076 6585 6.150307 TGTTGATCACTAGAGAGAAGAGACAC 59.850 42.308 0.00 0.00 0.00 3.67
6088 6618 8.450578 AACAGAAACAAATGTTGATCACTAGA 57.549 30.769 0.00 0.00 38.19 2.43
6193 6723 6.377712 TGACACCATCATGCATAAAGATTTCA 59.622 34.615 0.00 0.00 29.99 2.69
6203 6733 2.751259 GTCACTTGACACCATCATGCAT 59.249 45.455 4.43 0.00 44.18 3.96
6277 6807 3.057736 ACTGATTCTGCATGTCAAACAGC 60.058 43.478 0.00 0.00 0.00 4.40
6365 6895 1.009829 GCTGCTCCGGTGTTAGATTG 58.990 55.000 0.00 0.00 0.00 2.67
6456 7049 3.366374 CCGCACATTTCCTTCTTCCTTTC 60.366 47.826 0.00 0.00 0.00 2.62
6540 7133 6.319658 ACTTGATCATGAACATATTTTCCGCT 59.680 34.615 15.03 0.00 0.00 5.52
6595 7188 1.880027 GTTAAAGTGGAGGCACCTGTG 59.120 52.381 1.84 0.00 39.86 3.66
6596 7189 1.774856 AGTTAAAGTGGAGGCACCTGT 59.225 47.619 1.84 0.00 39.86 4.00
6597 7190 2.154462 CAGTTAAAGTGGAGGCACCTG 58.846 52.381 1.84 0.00 39.86 4.00
6609 7203 7.371126 GAGTCATCTCTTTTCCCAGTTAAAG 57.629 40.000 0.00 0.00 37.68 1.85
6740 7350 2.297701 ACAACCGCACTTTCAGACATT 58.702 42.857 0.00 0.00 0.00 2.71
6792 7402 7.962934 TGAGAAACTTAAAACGACAATGTTG 57.037 32.000 0.00 0.00 31.10 3.33
6795 7405 8.781067 TCAATGAGAAACTTAAAACGACAATG 57.219 30.769 0.00 0.00 0.00 2.82
6807 7417 2.039084 ACCGAGGCTCAATGAGAAACTT 59.961 45.455 15.38 0.00 0.00 2.66
6816 7426 1.078143 GGCAAGACCGAGGCTCAAT 60.078 57.895 15.95 0.55 0.00 2.57
6817 7427 2.217038 AGGCAAGACCGAGGCTCAA 61.217 57.895 15.95 0.00 46.52 3.02
7002 7612 5.923733 ACGGATATTTCTGTTCTCTCTGT 57.076 39.130 0.00 0.00 38.33 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.