Multiple sequence alignment - TraesCS7A01G260400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G260400 chr7A 100.000 5041 0 0 1 5041 252535074 252540114 0.000000e+00 9310
1 TraesCS7A01G260400 chr7A 91.195 159 14 0 3292 3450 421785008 421785166 3.060000e-52 217
2 TraesCS7A01G260400 chr7D 94.613 2413 77 19 849 3242 237388704 237391082 0.000000e+00 3687
3 TraesCS7A01G260400 chr7D 94.451 847 42 4 3431 4276 237391224 237392066 0.000000e+00 1299
4 TraesCS7A01G260400 chr7D 87.215 657 82 2 4386 5041 237396172 237396827 0.000000e+00 747
5 TraesCS7A01G260400 chr7D 77.737 539 102 15 4485 5010 586900314 586899781 1.050000e-81 315
6 TraesCS7A01G260400 chr7D 77.180 539 106 11 4485 5010 533754569 533755103 1.060000e-76 298
7 TraesCS7A01G260400 chr7D 91.379 116 8 2 642 755 237388461 237388576 1.880000e-34 158
8 TraesCS7A01G260400 chr7B 92.958 2258 103 20 995 3242 213900872 213903083 0.000000e+00 3238
9 TraesCS7A01G260400 chr7B 95.272 846 35 3 3431 4276 213903225 213904065 0.000000e+00 1336
10 TraesCS7A01G260400 chr7B 88.905 694 63 7 75 755 213899333 213900025 0.000000e+00 843
11 TraesCS7A01G260400 chr7B 87.956 274 9 5 751 1002 213900149 213900420 8.200000e-78 302
12 TraesCS7A01G260400 chr7B 90.506 158 13 2 3292 3449 78552578 78552423 1.840000e-49 207
13 TraesCS7A01G260400 chr6A 80.492 528 88 10 4497 5011 54372222 54372747 1.700000e-104 390
14 TraesCS7A01G260400 chr5B 77.881 538 100 17 4486 5010 706765696 706765165 2.930000e-82 316
15 TraesCS7A01G260400 chr3D 77.593 540 106 12 4485 5011 29810804 29810267 3.790000e-81 313
16 TraesCS7A01G260400 chr4A 77.087 515 105 6 4505 5010 646728486 646728996 8.260000e-73 285
17 TraesCS7A01G260400 chr6B 76.306 536 111 13 4488 5011 279006555 279006024 6.430000e-69 272
18 TraesCS7A01G260400 chr6B 91.558 154 13 0 3292 3445 537553843 537553996 3.950000e-51 213
19 TraesCS7A01G260400 chr1D 75.260 578 124 16 4438 5008 433129492 433128927 1.800000e-64 257
20 TraesCS7A01G260400 chr4B 93.377 151 10 0 3292 3442 438375183 438375333 1.830000e-54 224
21 TraesCS7A01G260400 chr4B 92.763 152 11 0 3292 3443 106227411 106227562 2.360000e-53 220
22 TraesCS7A01G260400 chr4B 92.105 152 11 1 3292 3443 146469218 146469368 3.950000e-51 213
23 TraesCS7A01G260400 chr4B 90.123 162 15 1 3284 3445 510827817 510827657 5.110000e-50 209
24 TraesCS7A01G260400 chr3B 92.157 153 10 1 3292 3442 328715446 328715598 1.100000e-51 215
25 TraesCS7A01G260400 chrUn 91.391 151 13 0 3292 3442 126680628 126680478 1.840000e-49 207
26 TraesCS7A01G260400 chr6D 73.731 335 69 10 4722 5040 156442954 156443285 4.120000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G260400 chr7A 252535074 252540114 5040 False 9310.000000 9310 100.00000 1 5041 1 chr7A.!!$F1 5040
1 TraesCS7A01G260400 chr7D 237388461 237392066 3605 False 1714.666667 3687 93.48100 642 4276 3 chr7D.!!$F3 3634
2 TraesCS7A01G260400 chr7D 237396172 237396827 655 False 747.000000 747 87.21500 4386 5041 1 chr7D.!!$F1 655
3 TraesCS7A01G260400 chr7D 586899781 586900314 533 True 315.000000 315 77.73700 4485 5010 1 chr7D.!!$R1 525
4 TraesCS7A01G260400 chr7D 533754569 533755103 534 False 298.000000 298 77.18000 4485 5010 1 chr7D.!!$F2 525
5 TraesCS7A01G260400 chr7B 213899333 213904065 4732 False 1429.750000 3238 91.27275 75 4276 4 chr7B.!!$F1 4201
6 TraesCS7A01G260400 chr6A 54372222 54372747 525 False 390.000000 390 80.49200 4497 5011 1 chr6A.!!$F1 514
7 TraesCS7A01G260400 chr5B 706765165 706765696 531 True 316.000000 316 77.88100 4486 5010 1 chr5B.!!$R1 524
8 TraesCS7A01G260400 chr3D 29810267 29810804 537 True 313.000000 313 77.59300 4485 5011 1 chr3D.!!$R1 526
9 TraesCS7A01G260400 chr4A 646728486 646728996 510 False 285.000000 285 77.08700 4505 5010 1 chr4A.!!$F1 505
10 TraesCS7A01G260400 chr6B 279006024 279006555 531 True 272.000000 272 76.30600 4488 5011 1 chr6B.!!$R1 523
11 TraesCS7A01G260400 chr1D 433128927 433129492 565 True 257.000000 257 75.26000 4438 5008 1 chr1D.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 425 0.093026 CGACTCCATTTTGACGCGTC 59.907 55.0 31.66 31.66 0.00 5.19 F
1229 1857 0.032952 TCGCACGTTTCCTACTTGCT 59.967 50.0 0.00 0.00 46.62 3.91 F
1419 2047 0.038067 CCAACCGACACCGTGTATGA 60.038 55.0 3.58 0.00 0.00 2.15 F
2141 2778 0.321671 TACTCTGGAGCAAGGCACAC 59.678 55.0 0.00 0.00 0.00 3.82 F
3139 3782 0.338467 TGCTCAGGCCTAGGGAACTA 59.662 55.0 3.98 0.00 38.84 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 2126 0.034186 TGCTCCCTAACCAATGGCAG 60.034 55.000 0.00 0.00 0.0 4.85 R
2932 3575 1.871039 GCCTTTGTGAAGTCGCTGTAA 59.129 47.619 0.00 0.00 0.0 2.41 R
3290 3953 0.539986 TATTTGTGGACGGAGGGAGC 59.460 55.000 0.00 0.00 0.0 4.70 R
3650 4313 0.817654 GGTTGCATACCTTTCCCTGC 59.182 55.000 9.89 0.00 44.1 4.85 R
4310 4978 0.107066 AATGAGTGATGATGGCGGCA 60.107 50.000 16.34 16.34 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.752833 ACTCGGACTCAACCAACCC 59.247 57.895 0.00 0.00 0.00 4.11
19 20 0.763223 ACTCGGACTCAACCAACCCT 60.763 55.000 0.00 0.00 0.00 4.34
20 21 1.263356 CTCGGACTCAACCAACCCTA 58.737 55.000 0.00 0.00 0.00 3.53
21 22 1.831736 CTCGGACTCAACCAACCCTAT 59.168 52.381 0.00 0.00 0.00 2.57
22 23 1.829222 TCGGACTCAACCAACCCTATC 59.171 52.381 0.00 0.00 0.00 2.08
23 24 1.831736 CGGACTCAACCAACCCTATCT 59.168 52.381 0.00 0.00 0.00 1.98
24 25 2.236395 CGGACTCAACCAACCCTATCTT 59.764 50.000 0.00 0.00 0.00 2.40
25 26 3.449737 CGGACTCAACCAACCCTATCTTA 59.550 47.826 0.00 0.00 0.00 2.10
26 27 4.101119 CGGACTCAACCAACCCTATCTTAT 59.899 45.833 0.00 0.00 0.00 1.73
27 28 5.303589 CGGACTCAACCAACCCTATCTTATA 59.696 44.000 0.00 0.00 0.00 0.98
28 29 6.516860 CGGACTCAACCAACCCTATCTTATAG 60.517 46.154 0.00 0.00 0.00 1.31
29 30 6.553852 GGACTCAACCAACCCTATCTTATAGA 59.446 42.308 0.00 0.00 0.00 1.98
30 31 7.256012 GGACTCAACCAACCCTATCTTATAGAG 60.256 44.444 0.00 0.00 0.00 2.43
31 32 7.133483 ACTCAACCAACCCTATCTTATAGAGT 58.867 38.462 0.00 0.00 0.00 3.24
32 33 7.624077 ACTCAACCAACCCTATCTTATAGAGTT 59.376 37.037 0.00 0.00 0.00 3.01
33 34 7.792032 TCAACCAACCCTATCTTATAGAGTTG 58.208 38.462 12.03 12.03 30.83 3.16
34 35 6.749036 ACCAACCCTATCTTATAGAGTTGG 57.251 41.667 26.26 26.26 45.15 3.77
35 36 6.210522 ACCAACCCTATCTTATAGAGTTGGT 58.789 40.000 27.20 27.20 46.40 3.67
36 37 6.760291 CCAACCCTATCTTATAGAGTTGGTC 58.240 44.000 22.55 0.00 39.77 4.02
37 38 6.448006 CAACCCTATCTTATAGAGTTGGTCG 58.552 44.000 11.43 0.00 28.76 4.79
38 39 5.950023 ACCCTATCTTATAGAGTTGGTCGA 58.050 41.667 0.00 0.00 0.00 4.20
39 40 6.553857 ACCCTATCTTATAGAGTTGGTCGAT 58.446 40.000 0.00 0.00 0.00 3.59
40 41 6.434652 ACCCTATCTTATAGAGTTGGTCGATG 59.565 42.308 0.00 0.00 0.00 3.84
41 42 6.659668 CCCTATCTTATAGAGTTGGTCGATGA 59.340 42.308 0.00 0.00 0.00 2.92
42 43 7.340743 CCCTATCTTATAGAGTTGGTCGATGAT 59.659 40.741 0.00 0.00 0.00 2.45
43 44 8.402472 CCTATCTTATAGAGTTGGTCGATGATC 58.598 40.741 0.00 0.00 0.00 2.92
44 45 6.576662 TCTTATAGAGTTGGTCGATGATCC 57.423 41.667 0.00 0.00 0.00 3.36
45 46 6.307776 TCTTATAGAGTTGGTCGATGATCCT 58.692 40.000 0.00 0.00 0.00 3.24
46 47 4.862902 ATAGAGTTGGTCGATGATCCTG 57.137 45.455 0.00 0.00 0.00 3.86
47 48 1.137872 AGAGTTGGTCGATGATCCTGC 59.862 52.381 0.00 0.00 0.00 4.85
48 49 0.179100 AGTTGGTCGATGATCCTGCG 60.179 55.000 0.00 0.00 0.00 5.18
49 50 1.521457 TTGGTCGATGATCCTGCGC 60.521 57.895 0.00 0.00 0.00 6.09
50 51 2.663188 GGTCGATGATCCTGCGCC 60.663 66.667 4.18 0.00 0.00 6.53
51 52 3.032609 GTCGATGATCCTGCGCCG 61.033 66.667 4.18 0.00 0.00 6.46
52 53 3.216292 TCGATGATCCTGCGCCGA 61.216 61.111 4.18 0.00 0.00 5.54
53 54 2.048784 CGATGATCCTGCGCCGAT 60.049 61.111 4.18 5.75 0.00 4.18
54 55 2.378084 CGATGATCCTGCGCCGATG 61.378 63.158 11.43 0.00 0.00 3.84
55 56 1.005748 GATGATCCTGCGCCGATGA 60.006 57.895 11.43 4.15 0.00 2.92
56 57 0.601046 GATGATCCTGCGCCGATGAA 60.601 55.000 11.43 1.33 0.00 2.57
57 58 0.602106 ATGATCCTGCGCCGATGAAG 60.602 55.000 11.43 0.00 0.00 3.02
58 59 1.958205 GATCCTGCGCCGATGAAGG 60.958 63.158 11.43 7.31 0.00 3.46
59 60 3.466791 ATCCTGCGCCGATGAAGGG 62.467 63.158 4.18 0.00 0.00 3.95
60 61 4.161295 CCTGCGCCGATGAAGGGA 62.161 66.667 4.18 0.00 0.00 4.20
61 62 2.125147 CTGCGCCGATGAAGGGAA 60.125 61.111 4.18 0.00 0.00 3.97
62 63 2.125147 TGCGCCGATGAAGGGAAG 60.125 61.111 4.18 0.00 0.00 3.46
63 64 2.897350 GCGCCGATGAAGGGAAGG 60.897 66.667 0.00 0.00 0.00 3.46
64 65 2.900273 CGCCGATGAAGGGAAGGA 59.100 61.111 0.00 0.00 0.00 3.36
65 66 1.447643 CGCCGATGAAGGGAAGGAT 59.552 57.895 0.00 0.00 0.00 3.24
66 67 0.882042 CGCCGATGAAGGGAAGGATG 60.882 60.000 0.00 0.00 0.00 3.51
67 68 0.181350 GCCGATGAAGGGAAGGATGT 59.819 55.000 0.00 0.00 0.00 3.06
68 69 1.811941 GCCGATGAAGGGAAGGATGTC 60.812 57.143 0.00 0.00 0.00 3.06
69 70 1.202698 CCGATGAAGGGAAGGATGTCC 60.203 57.143 0.00 0.00 36.90 4.02
70 71 1.539065 CGATGAAGGGAAGGATGTCCG 60.539 57.143 0.00 0.00 42.08 4.79
71 72 0.181350 ATGAAGGGAAGGATGTCCGC 59.819 55.000 0.00 0.00 42.08 5.54
72 73 0.909610 TGAAGGGAAGGATGTCCGCT 60.910 55.000 0.00 0.00 42.08 5.52
73 74 0.253327 GAAGGGAAGGATGTCCGCTT 59.747 55.000 0.00 0.00 42.08 4.68
100 101 1.363744 CTGAACTGATCCTTCGCACC 58.636 55.000 0.00 0.00 0.00 5.01
101 102 0.389817 TGAACTGATCCTTCGCACCG 60.390 55.000 0.00 0.00 0.00 4.94
108 109 3.411351 CCTTCGCACCGGTCAACG 61.411 66.667 2.59 9.80 43.80 4.10
110 111 4.595538 TTCGCACCGGTCAACGCT 62.596 61.111 2.59 0.00 42.52 5.07
112 113 3.179265 CGCACCGGTCAACGCTAG 61.179 66.667 2.59 0.00 42.52 3.42
114 115 2.654877 CACCGGTCAACGCTAGGT 59.345 61.111 2.59 0.00 42.52 3.08
116 117 0.601841 CACCGGTCAACGCTAGGTTT 60.602 55.000 2.59 0.00 42.52 3.27
124 125 1.467342 CAACGCTAGGTTTGGGTTAGC 59.533 52.381 0.00 0.00 38.27 3.09
126 127 2.095750 GCTAGGTTTGGGTTAGCGC 58.904 57.895 0.00 0.00 31.54 5.92
127 128 0.675522 GCTAGGTTTGGGTTAGCGCA 60.676 55.000 11.47 0.00 35.68 6.09
136 137 1.599797 GGTTAGCGCACACCCAGTT 60.600 57.895 11.47 0.00 0.00 3.16
140 141 4.645921 GCGCACACCCAGTTTGGC 62.646 66.667 0.30 0.00 35.79 4.52
141 142 4.326766 CGCACACCCAGTTTGGCG 62.327 66.667 0.00 0.00 35.79 5.69
146 147 4.514585 ACCCAGTTTGGCGCCACA 62.515 61.111 32.95 22.67 35.79 4.17
156 157 2.482374 GCGCCACATCTGACTTGC 59.518 61.111 0.00 0.00 0.00 4.01
160 161 0.874390 GCCACATCTGACTTGCGAAA 59.126 50.000 0.00 0.00 0.00 3.46
180 181 2.244382 CGAACAACACGCCACGTC 59.756 61.111 0.00 0.00 38.32 4.34
222 223 2.107041 TTGGCGGTCACCTTGTCGAT 62.107 55.000 0.00 0.00 0.00 3.59
232 233 2.932614 CACCTTGTCGATTGTCATCCTC 59.067 50.000 0.00 0.00 0.00 3.71
256 257 3.827898 GAGGAGGAGGTGTCGCCG 61.828 72.222 0.00 0.00 43.70 6.46
262 263 3.755628 GAGGTGTCGCCGCCACTA 61.756 66.667 0.00 0.00 44.14 2.74
276 277 3.059051 CCGCCACTATCGAGTTAGTAGAC 60.059 52.174 0.00 0.00 31.73 2.59
313 314 2.819284 GGCAATCCTCGGGGTAGGG 61.819 68.421 0.00 0.00 37.24 3.53
314 315 2.819284 GCAATCCTCGGGGTAGGGG 61.819 68.421 0.00 0.00 37.24 4.79
315 316 1.384082 CAATCCTCGGGGTAGGGGT 60.384 63.158 0.00 0.00 37.24 4.95
324 328 2.376165 GGGTAGGGGTTGCCTCCTC 61.376 68.421 0.00 0.00 34.75 3.71
338 342 0.807667 CTCCTCCTTCATGTTCGCCG 60.808 60.000 0.00 0.00 0.00 6.46
379 383 4.284550 GGTGCCACCTCCTTGCCA 62.285 66.667 6.63 0.00 34.73 4.92
387 391 2.345760 CCTCCTTGCCACATGCCAC 61.346 63.158 0.00 0.00 40.16 5.01
405 409 0.537188 ACCATGGTGGAGATGTCGAC 59.463 55.000 18.99 9.11 40.96 4.20
420 424 0.319211 TCGACTCCATTTTGACGCGT 60.319 50.000 13.85 13.85 0.00 6.01
421 425 0.093026 CGACTCCATTTTGACGCGTC 59.907 55.000 31.66 31.66 0.00 5.19
465 469 1.503542 CTTGAAGTGATGGTGCGGC 59.496 57.895 0.00 0.00 0.00 6.53
499 503 0.249489 ATCCTTGACGTGGCTATCGC 60.249 55.000 0.00 0.00 0.00 4.58
519 524 3.589881 GATGGCCACGGATGCTGC 61.590 66.667 8.16 0.00 0.00 5.25
556 561 4.548451 TGAGCATCAACTCAATCTGTCT 57.452 40.909 0.00 0.00 45.97 3.41
561 566 4.453478 GCATCAACTCAATCTGTCTTGTGA 59.547 41.667 0.00 0.00 0.00 3.58
562 567 5.616424 GCATCAACTCAATCTGTCTTGTGAC 60.616 44.000 0.00 0.00 43.20 3.67
563 568 5.282055 TCAACTCAATCTGTCTTGTGACT 57.718 39.130 0.00 0.00 43.29 3.41
564 569 5.292765 TCAACTCAATCTGTCTTGTGACTC 58.707 41.667 0.00 0.00 43.29 3.36
565 570 5.069648 TCAACTCAATCTGTCTTGTGACTCT 59.930 40.000 0.00 0.00 43.29 3.24
568 573 7.055667 ACTCAATCTGTCTTGTGACTCTTTA 57.944 36.000 0.00 0.00 43.29 1.85
577 583 3.079960 TGTGACTCTTTATCGATCCGC 57.920 47.619 0.00 0.00 0.00 5.54
579 585 1.674441 TGACTCTTTATCGATCCGCGT 59.326 47.619 0.00 0.00 41.80 6.01
609 615 2.404995 GGAGGTGTGCATGCTGCTC 61.405 63.158 20.33 12.03 45.31 4.26
620 626 1.260538 ATGCTGCTCCTCCTTGTCGA 61.261 55.000 0.00 0.00 0.00 4.20
663 676 0.892063 TTGATCGTGGGTGTCGATGA 59.108 50.000 5.58 0.00 45.90 2.92
752 766 0.679960 GCCTACCGAACTTGCCCATT 60.680 55.000 0.00 0.00 0.00 3.16
754 768 2.942306 GCCTACCGAACTTGCCCATTTA 60.942 50.000 0.00 0.00 0.00 1.40
755 769 3.551846 CCTACCGAACTTGCCCATTTAT 58.448 45.455 0.00 0.00 0.00 1.40
756 770 4.710324 CCTACCGAACTTGCCCATTTATA 58.290 43.478 0.00 0.00 0.00 0.98
757 771 5.313712 CCTACCGAACTTGCCCATTTATAT 58.686 41.667 0.00 0.00 0.00 0.86
765 907 9.191995 CGAACTTGCCCATTTATATTTTAATCC 57.808 33.333 0.00 0.00 0.00 3.01
864 1026 5.796424 ATCTGATGGTTGTGAAAAGCTTT 57.204 34.783 5.69 5.69 0.00 3.51
1090 1718 4.787280 CACTCCGCCTCCCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
1227 1855 1.986378 CTCTCGCACGTTTCCTACTTG 59.014 52.381 0.00 0.00 0.00 3.16
1229 1857 0.032952 TCGCACGTTTCCTACTTGCT 59.967 50.000 0.00 0.00 46.62 3.91
1272 1900 1.838073 ATCCTTTTCCGGCGACTGGT 61.838 55.000 9.30 0.00 0.00 4.00
1375 2003 1.820906 CCCCGTCGTCGACCTCATA 60.821 63.158 19.29 0.00 39.71 2.15
1419 2047 0.038067 CCAACCGACACCGTGTATGA 60.038 55.000 3.58 0.00 0.00 2.15
1586 2216 1.931709 GCGTGCAGAGTACCGTGTAAA 60.932 52.381 0.00 0.00 0.00 2.01
1628 2258 2.960819 ACTCGTGTAAACAGCCATCTC 58.039 47.619 0.00 0.00 0.00 2.75
1664 2294 7.912250 GCTCATATCATCTACAAAGTGTTTTGG 59.088 37.037 5.17 0.00 46.33 3.28
1716 2350 5.046014 AGCTGACTTTGGATTACTGATGAGT 60.046 40.000 0.00 0.00 36.07 3.41
1721 2355 6.893583 ACTTTGGATTACTGATGAGTAGCAT 58.106 36.000 0.00 0.00 40.77 3.79
1759 2393 5.453762 CCATCTCATTACCTATGTGTCTGCA 60.454 44.000 0.00 0.00 35.64 4.41
1804 2438 6.294176 GCAAGTCCTCAAGCTTTCTGATTTTA 60.294 38.462 0.00 0.00 0.00 1.52
1827 2463 1.134075 GACAATGCGCTGTGCTGAG 59.866 57.895 14.92 6.31 46.63 3.35
2141 2778 0.321671 TACTCTGGAGCAAGGCACAC 59.678 55.000 0.00 0.00 0.00 3.82
2378 3015 4.134563 ACCACCATCTTGTACTTCACAAC 58.865 43.478 0.00 0.00 42.29 3.32
2600 3239 6.963322 AGGCTCATATACCTTCAGTTTTCTT 58.037 36.000 0.00 0.00 29.74 2.52
2745 3387 7.278868 CACGAAGGAGATATTTTACTTGAGCTT 59.721 37.037 0.00 0.00 0.00 3.74
2747 3389 8.973378 CGAAGGAGATATTTTACTTGAGCTTAG 58.027 37.037 0.00 0.00 0.00 2.18
2748 3390 9.267084 GAAGGAGATATTTTACTTGAGCTTAGG 57.733 37.037 0.00 0.00 0.00 2.69
2750 3392 8.773216 AGGAGATATTTTACTTGAGCTTAGGTT 58.227 33.333 0.00 0.00 0.00 3.50
2787 3430 7.716799 TTACTATTCATTTTGTTGCCAGGAT 57.283 32.000 0.00 0.00 0.00 3.24
2810 3453 9.674068 GGATTTGTAGTTATTCTCCTCTTTTCT 57.326 33.333 0.00 0.00 0.00 2.52
2814 3457 8.437274 TGTAGTTATTCTCCTCTTTTCTCCTT 57.563 34.615 0.00 0.00 0.00 3.36
2860 3503 5.514484 GGCAGAGGATGAATGGATACTTGAT 60.514 44.000 0.00 0.00 37.61 2.57
2914 3557 7.881232 CCACTGGTATGTTCCTTCTTTTTACTA 59.119 37.037 0.00 0.00 0.00 1.82
2932 3575 2.304180 ACTAGTGCACCAGAAATCTGCT 59.696 45.455 19.53 0.00 42.47 4.24
2938 3581 2.159462 GCACCAGAAATCTGCTTACAGC 60.159 50.000 4.87 0.00 44.10 4.40
2951 3594 2.096218 GCTTACAGCGACTTCACAAAGG 60.096 50.000 0.00 0.00 36.78 3.11
2952 3595 1.508632 TACAGCGACTTCACAAAGGC 58.491 50.000 0.00 0.00 37.15 4.35
3012 3655 6.246163 TGGTCTGTATTGTTCTCTAGAGTGA 58.754 40.000 19.21 7.03 0.00 3.41
3016 3659 6.943146 TCTGTATTGTTCTCTAGAGTGACAGT 59.057 38.462 19.21 20.41 31.37 3.55
3024 3667 8.136165 TGTTCTCTAGAGTGACAGTTACTTTTC 58.864 37.037 19.21 0.00 0.00 2.29
3025 3668 7.818997 TCTCTAGAGTGACAGTTACTTTTCA 57.181 36.000 19.21 0.00 0.00 2.69
3026 3669 8.410673 TCTCTAGAGTGACAGTTACTTTTCAT 57.589 34.615 19.21 0.00 0.00 2.57
3027 3670 8.300286 TCTCTAGAGTGACAGTTACTTTTCATG 58.700 37.037 19.21 0.00 0.00 3.07
3028 3671 7.952671 TCTAGAGTGACAGTTACTTTTCATGT 58.047 34.615 0.00 0.00 0.00 3.21
3029 3672 8.421784 TCTAGAGTGACAGTTACTTTTCATGTT 58.578 33.333 0.00 0.00 0.00 2.71
3030 3673 7.251704 AGAGTGACAGTTACTTTTCATGTTG 57.748 36.000 0.00 0.00 0.00 3.33
3031 3674 7.047891 AGAGTGACAGTTACTTTTCATGTTGA 58.952 34.615 0.00 0.00 0.00 3.18
3032 3675 7.225538 AGAGTGACAGTTACTTTTCATGTTGAG 59.774 37.037 0.00 0.00 0.00 3.02
3033 3676 7.047891 AGTGACAGTTACTTTTCATGTTGAGA 58.952 34.615 0.00 0.00 0.00 3.27
3034 3677 7.552687 AGTGACAGTTACTTTTCATGTTGAGAA 59.447 33.333 0.00 0.00 0.00 2.87
3035 3678 8.345565 GTGACAGTTACTTTTCATGTTGAGAAT 58.654 33.333 0.00 0.00 0.00 2.40
3036 3679 8.559536 TGACAGTTACTTTTCATGTTGAGAATC 58.440 33.333 0.00 0.00 0.00 2.52
3037 3680 7.875971 ACAGTTACTTTTCATGTTGAGAATCC 58.124 34.615 0.00 0.00 0.00 3.01
3052 3695 6.078456 TGAGAATCCCAGGTCATATTTTGT 57.922 37.500 0.00 0.00 0.00 2.83
3061 3704 6.154363 CCCAGGTCATATTTTGTGTTACCATT 59.846 38.462 0.00 0.00 0.00 3.16
3135 3778 2.041508 CCTGCTCAGGCCTAGGGA 60.042 66.667 3.98 0.83 42.44 4.20
3136 3779 1.690633 CCTGCTCAGGCCTAGGGAA 60.691 63.158 3.98 0.00 42.44 3.97
3137 3780 1.524482 CTGCTCAGGCCTAGGGAAC 59.476 63.158 3.98 0.00 37.74 3.62
3138 3781 0.980231 CTGCTCAGGCCTAGGGAACT 60.980 60.000 3.98 0.00 40.57 3.01
3139 3782 0.338467 TGCTCAGGCCTAGGGAACTA 59.662 55.000 3.98 0.00 38.84 2.24
3140 3783 1.273609 TGCTCAGGCCTAGGGAACTAA 60.274 52.381 3.98 0.00 38.31 2.24
3175 3818 9.830975 AAAAGGCATAACTAAACAAAATTGTCT 57.169 25.926 0.00 0.00 41.31 3.41
3203 3846 7.121168 ACAGATGACTCTTTCAGTTTTTGACAA 59.879 33.333 0.00 0.00 37.77 3.18
3246 3909 9.472361 GTTTTTCTTCTGATATGCATGCAATAT 57.528 29.630 26.68 20.77 0.00 1.28
3257 3920 3.133183 TGCATGCAATATTGTGATGGCTT 59.867 39.130 20.30 4.54 0.00 4.35
3285 3948 9.325150 CATCAAGTGGTTAGTTAAACAATTACG 57.675 33.333 2.72 0.00 38.90 3.18
3290 3953 8.508875 AGTGGTTAGTTAAACAATTACGGAATG 58.491 33.333 0.00 0.00 40.08 2.67
3303 3966 2.367202 GGAATGCTCCCTCCGTCCA 61.367 63.158 0.00 0.00 35.42 4.02
3304 3967 1.153349 GAATGCTCCCTCCGTCCAC 60.153 63.158 0.00 0.00 0.00 4.02
3310 3973 1.141053 GCTCCCTCCGTCCACAAATAT 59.859 52.381 0.00 0.00 0.00 1.28
3311 3974 2.367567 GCTCCCTCCGTCCACAAATATA 59.632 50.000 0.00 0.00 0.00 0.86
3312 3975 3.181458 GCTCCCTCCGTCCACAAATATAA 60.181 47.826 0.00 0.00 0.00 0.98
3315 3978 4.905456 TCCCTCCGTCCACAAATATAAGAT 59.095 41.667 0.00 0.00 0.00 2.40
3316 3979 4.997395 CCCTCCGTCCACAAATATAAGATG 59.003 45.833 0.00 0.00 0.00 2.90
3317 3980 5.454755 CCCTCCGTCCACAAATATAAGATGT 60.455 44.000 0.00 0.00 0.00 3.06
3318 3981 6.055588 CCTCCGTCCACAAATATAAGATGTT 58.944 40.000 0.00 0.00 0.00 2.71
3319 3982 6.202954 CCTCCGTCCACAAATATAAGATGTTC 59.797 42.308 0.00 0.00 0.00 3.18
3320 3983 6.884832 TCCGTCCACAAATATAAGATGTTCT 58.115 36.000 0.00 0.00 0.00 3.01
3321 3984 8.014070 TCCGTCCACAAATATAAGATGTTCTA 57.986 34.615 0.00 0.00 0.00 2.10
3322 3985 8.479689 TCCGTCCACAAATATAAGATGTTCTAA 58.520 33.333 0.00 0.00 0.00 2.10
3323 3986 8.548721 CCGTCCACAAATATAAGATGTTCTAAC 58.451 37.037 0.00 0.00 0.00 2.34
3324 3987 9.314321 CGTCCACAAATATAAGATGTTCTAACT 57.686 33.333 0.00 0.00 0.00 2.24
3353 4016 7.592439 TCTTAGTCGGATGTATATAGACACG 57.408 40.000 1.52 3.35 34.56 4.49
3354 4017 7.157347 TCTTAGTCGGATGTATATAGACACGT 58.843 38.462 1.52 0.00 34.56 4.49
3355 4018 7.658982 TCTTAGTCGGATGTATATAGACACGTT 59.341 37.037 1.52 0.30 34.56 3.99
3356 4019 6.630444 AGTCGGATGTATATAGACACGTTT 57.370 37.500 1.52 0.00 34.56 3.60
3357 4020 7.734924 AGTCGGATGTATATAGACACGTTTA 57.265 36.000 1.52 0.00 34.56 2.01
3358 4021 8.158169 AGTCGGATGTATATAGACACGTTTAA 57.842 34.615 1.52 0.00 34.56 1.52
3359 4022 8.288208 AGTCGGATGTATATAGACACGTTTAAG 58.712 37.037 1.52 0.00 34.56 1.85
3360 4023 8.072567 GTCGGATGTATATAGACACGTTTAAGT 58.927 37.037 1.52 0.00 30.52 2.24
3361 4024 8.071967 TCGGATGTATATAGACACGTTTAAGTG 58.928 37.037 1.52 0.00 46.83 3.16
3379 4042 8.583765 GTTTAAGTGTGTTTGTTCACTCATTTC 58.416 33.333 0.00 0.00 42.95 2.17
3380 4043 5.895636 AGTGTGTTTGTTCACTCATTTCA 57.104 34.783 0.00 0.00 40.28 2.69
3382 4045 5.415701 AGTGTGTTTGTTCACTCATTTCAGT 59.584 36.000 0.00 0.00 40.28 3.41
3383 4046 5.739161 GTGTGTTTGTTCACTCATTTCAGTC 59.261 40.000 0.00 0.00 38.90 3.51
3384 4047 5.647658 TGTGTTTGTTCACTCATTTCAGTCT 59.352 36.000 0.00 0.00 38.90 3.24
3385 4048 5.967674 GTGTTTGTTCACTCATTTCAGTCTG 59.032 40.000 0.00 0.00 35.68 3.51
3386 4049 5.647658 TGTTTGTTCACTCATTTCAGTCTGT 59.352 36.000 0.00 0.00 0.00 3.41
3387 4050 6.821160 TGTTTGTTCACTCATTTCAGTCTGTA 59.179 34.615 0.00 0.00 0.00 2.74
3388 4051 7.498900 TGTTTGTTCACTCATTTCAGTCTGTAT 59.501 33.333 0.00 0.00 0.00 2.29
3389 4052 7.425577 TTGTTCACTCATTTCAGTCTGTATG 57.574 36.000 0.00 5.69 0.00 2.39
3390 4053 6.524734 TGTTCACTCATTTCAGTCTGTATGT 58.475 36.000 13.61 0.32 0.00 2.29
3391 4054 7.666623 TGTTCACTCATTTCAGTCTGTATGTA 58.333 34.615 13.61 4.80 0.00 2.29
3392 4055 7.814587 TGTTCACTCATTTCAGTCTGTATGTAG 59.185 37.037 13.61 12.22 0.00 2.74
3393 4056 7.468141 TCACTCATTTCAGTCTGTATGTAGT 57.532 36.000 13.61 12.61 0.00 2.73
3394 4057 8.575649 TCACTCATTTCAGTCTGTATGTAGTA 57.424 34.615 13.61 0.33 0.00 1.82
3395 4058 8.459635 TCACTCATTTCAGTCTGTATGTAGTAC 58.540 37.037 13.61 0.00 0.00 2.73
3396 4059 8.244113 CACTCATTTCAGTCTGTATGTAGTACA 58.756 37.037 5.24 5.24 40.93 2.90
3397 4060 8.972127 ACTCATTTCAGTCTGTATGTAGTACAT 58.028 33.333 19.36 19.36 42.21 2.29
3417 4080 9.988815 AGTACATACTGAAATATCCAGAACATC 57.011 33.333 10.86 0.00 34.72 3.06
3418 4081 9.988815 GTACATACTGAAATATCCAGAACATCT 57.011 33.333 10.86 0.00 35.69 2.90
3451 4114 3.029570 ACGGAGGGAGTAGTTAACATCC 58.970 50.000 8.61 11.53 0.00 3.51
3466 4129 6.598064 AGTTAACATCCGTTAGCTGCTTTTAT 59.402 34.615 7.79 0.00 44.58 1.40
3495 4158 4.498323 GCCGTGTTACTAGTCATTTCGTAG 59.502 45.833 0.00 0.00 0.00 3.51
3506 4169 5.162075 AGTCATTTCGTAGCACAAGAGTAC 58.838 41.667 0.00 0.00 0.00 2.73
3697 4360 4.665833 TCTAATGAACTACCATGACCCG 57.334 45.455 0.00 0.00 0.00 5.28
3698 4361 4.028131 TCTAATGAACTACCATGACCCGT 58.972 43.478 0.00 0.00 0.00 5.28
3699 4362 5.202765 TCTAATGAACTACCATGACCCGTA 58.797 41.667 0.00 0.00 0.00 4.02
3736 4399 8.742125 AACCTCCTGTCTATGAATATATTCCA 57.258 34.615 20.29 10.89 35.97 3.53
3741 4404 9.822727 TCCTGTCTATGAATATATTCCAGTGTA 57.177 33.333 20.29 3.59 35.97 2.90
3782 4447 6.348704 GGAAAACCATGAAATCCTGCATTTTG 60.349 38.462 0.00 0.00 34.60 2.44
3925 4593 2.760374 GTCCGGCCTATGAAGATTCTG 58.240 52.381 0.00 0.00 0.00 3.02
3947 4615 7.485810 TCTGCTACGATTTAACTATGCACTTA 58.514 34.615 0.00 0.00 0.00 2.24
4029 4697 1.920574 CGCAGTCAACCTATTCTCGTG 59.079 52.381 0.00 0.00 0.00 4.35
4063 4731 1.078708 TTGCCCTGCTAACCTACGC 60.079 57.895 0.00 0.00 0.00 4.42
4076 4744 5.686397 GCTAACCTACGCTATGAGTTGTAAG 59.314 44.000 0.00 0.00 0.00 2.34
4085 4753 5.593010 GCTATGAGTTGTAAGTAGGAGTGG 58.407 45.833 0.00 0.00 0.00 4.00
4101 4769 0.521735 GTGGTCATGCCGGTTTCTTC 59.478 55.000 1.90 0.00 41.21 2.87
4153 4821 8.779354 ACTTTGTATATCAGTTCAAGACCTTC 57.221 34.615 0.00 0.00 0.00 3.46
4181 4849 0.784778 GCGTTGCACTAGTCACTGTC 59.215 55.000 0.00 0.00 0.00 3.51
4199 4867 2.649312 TGTCTTCCCATGGTTTGAGGAT 59.351 45.455 11.73 0.00 0.00 3.24
4232 4900 5.797051 TGAACACTACCCCAAGTTGTATAC 58.203 41.667 1.45 0.00 32.33 1.47
4244 4912 7.227512 CCCCAAGTTGTATACAGATCTCAATTC 59.772 40.741 5.56 0.00 0.00 2.17
4271 4939 1.425428 CCGCATCGGCAAAGTCTTC 59.575 57.895 0.00 0.00 41.17 2.87
4276 4944 3.262420 GCATCGGCAAAGTCTTCTTCTA 58.738 45.455 0.00 0.00 40.72 2.10
4277 4945 3.062774 GCATCGGCAAAGTCTTCTTCTAC 59.937 47.826 0.00 0.00 40.72 2.59
4278 4946 3.314541 TCGGCAAAGTCTTCTTCTACC 57.685 47.619 0.00 0.00 32.90 3.18
4279 4947 2.631062 TCGGCAAAGTCTTCTTCTACCA 59.369 45.455 0.00 0.00 32.90 3.25
4280 4948 2.996621 CGGCAAAGTCTTCTTCTACCAG 59.003 50.000 0.00 0.00 32.90 4.00
4281 4949 2.744741 GGCAAAGTCTTCTTCTACCAGC 59.255 50.000 0.00 0.00 32.90 4.85
4282 4950 3.403038 GCAAAGTCTTCTTCTACCAGCA 58.597 45.455 0.00 0.00 32.90 4.41
4283 4951 3.187432 GCAAAGTCTTCTTCTACCAGCAC 59.813 47.826 0.00 0.00 32.90 4.40
4284 4952 4.636249 CAAAGTCTTCTTCTACCAGCACT 58.364 43.478 0.00 0.00 32.90 4.40
4285 4953 4.965200 AAGTCTTCTTCTACCAGCACTT 57.035 40.909 0.00 0.00 0.00 3.16
4286 4954 4.264460 AGTCTTCTTCTACCAGCACTTG 57.736 45.455 0.00 0.00 0.00 3.16
4287 4955 3.643792 AGTCTTCTTCTACCAGCACTTGT 59.356 43.478 0.00 0.00 0.00 3.16
4288 4956 3.743396 GTCTTCTTCTACCAGCACTTGTG 59.257 47.826 0.00 0.00 0.00 3.33
4289 4957 3.388024 TCTTCTTCTACCAGCACTTGTGT 59.612 43.478 2.61 0.00 0.00 3.72
4290 4958 3.111853 TCTTCTACCAGCACTTGTGTG 57.888 47.619 2.61 0.00 46.37 3.82
4291 4959 2.698274 TCTTCTACCAGCACTTGTGTGA 59.302 45.455 2.61 0.00 46.55 3.58
4292 4960 2.820059 TCTACCAGCACTTGTGTGAG 57.180 50.000 2.61 0.00 46.55 3.51
4293 4961 1.151668 CTACCAGCACTTGTGTGAGC 58.848 55.000 2.61 0.00 46.55 4.26
4294 4962 0.250295 TACCAGCACTTGTGTGAGCC 60.250 55.000 2.61 0.00 46.55 4.70
4295 4963 1.526686 CCAGCACTTGTGTGAGCCA 60.527 57.895 2.61 0.00 46.55 4.75
4296 4964 1.102809 CCAGCACTTGTGTGAGCCAA 61.103 55.000 2.61 0.00 46.55 4.52
4297 4965 0.740149 CAGCACTTGTGTGAGCCAAA 59.260 50.000 2.61 0.00 46.55 3.28
4298 4966 1.027357 AGCACTTGTGTGAGCCAAAG 58.973 50.000 2.61 0.00 46.55 2.77
4299 4967 1.024271 GCACTTGTGTGAGCCAAAGA 58.976 50.000 2.61 0.00 46.55 2.52
4300 4968 1.002033 GCACTTGTGTGAGCCAAAGAG 60.002 52.381 2.61 0.00 46.55 2.85
4301 4969 1.605710 CACTTGTGTGAGCCAAAGAGG 59.394 52.381 0.00 0.00 46.55 3.69
4325 4993 2.512286 CGTGCCGCCATCATCACT 60.512 61.111 0.00 0.00 0.00 3.41
4326 4994 2.528743 CGTGCCGCCATCATCACTC 61.529 63.158 0.00 0.00 0.00 3.51
4327 4995 1.450134 GTGCCGCCATCATCACTCA 60.450 57.895 0.00 0.00 0.00 3.41
4328 4996 0.816825 GTGCCGCCATCATCACTCAT 60.817 55.000 0.00 0.00 0.00 2.90
4329 4997 0.107066 TGCCGCCATCATCACTCATT 60.107 50.000 0.00 0.00 0.00 2.57
4330 4998 0.590195 GCCGCCATCATCACTCATTC 59.410 55.000 0.00 0.00 0.00 2.67
4331 4999 1.233019 CCGCCATCATCACTCATTCC 58.767 55.000 0.00 0.00 0.00 3.01
4332 5000 1.202734 CCGCCATCATCACTCATTCCT 60.203 52.381 0.00 0.00 0.00 3.36
4333 5001 2.569059 CGCCATCATCACTCATTCCTT 58.431 47.619 0.00 0.00 0.00 3.36
4334 5002 3.494924 CCGCCATCATCACTCATTCCTTA 60.495 47.826 0.00 0.00 0.00 2.69
4335 5003 3.496130 CGCCATCATCACTCATTCCTTAC 59.504 47.826 0.00 0.00 0.00 2.34
4336 5004 3.817647 GCCATCATCACTCATTCCTTACC 59.182 47.826 0.00 0.00 0.00 2.85
4337 5005 4.686944 GCCATCATCACTCATTCCTTACCA 60.687 45.833 0.00 0.00 0.00 3.25
4338 5006 5.061853 CCATCATCACTCATTCCTTACCAG 58.938 45.833 0.00 0.00 0.00 4.00
4339 5007 5.163269 CCATCATCACTCATTCCTTACCAGA 60.163 44.000 0.00 0.00 0.00 3.86
4340 5008 5.604758 TCATCACTCATTCCTTACCAGAG 57.395 43.478 0.00 0.00 0.00 3.35
4341 5009 3.895232 TCACTCATTCCTTACCAGAGC 57.105 47.619 0.00 0.00 0.00 4.09
4342 5010 3.445008 TCACTCATTCCTTACCAGAGCT 58.555 45.455 0.00 0.00 0.00 4.09
4343 5011 3.196469 TCACTCATTCCTTACCAGAGCTG 59.804 47.826 0.00 0.00 0.00 4.24
4353 5021 4.426112 CAGAGCTGGAGACGCGCA 62.426 66.667 5.73 0.00 35.50 6.09
4354 5022 4.427661 AGAGCTGGAGACGCGCAC 62.428 66.667 5.73 0.00 35.50 5.34
4367 5035 3.697444 CGCACGCACGCACACTAA 61.697 61.111 0.00 0.00 0.00 2.24
4368 5036 2.170985 GCACGCACGCACACTAAG 59.829 61.111 0.00 0.00 0.00 2.18
4369 5037 2.170985 CACGCACGCACACTAAGC 59.829 61.111 0.00 0.00 0.00 3.09
4370 5038 2.279851 ACGCACGCACACTAAGCA 60.280 55.556 0.00 0.00 0.00 3.91
4371 5039 1.885388 ACGCACGCACACTAAGCAA 60.885 52.632 0.00 0.00 0.00 3.91
4372 5040 1.227999 ACGCACGCACACTAAGCAAT 61.228 50.000 0.00 0.00 0.00 3.56
4373 5041 0.110238 CGCACGCACACTAAGCAATT 60.110 50.000 0.00 0.00 0.00 2.32
4374 5042 1.330306 GCACGCACACTAAGCAATTG 58.670 50.000 0.00 0.00 0.00 2.32
4375 5043 1.967762 CACGCACACTAAGCAATTGG 58.032 50.000 7.72 0.00 0.00 3.16
4376 5044 0.881118 ACGCACACTAAGCAATTGGG 59.119 50.000 7.72 0.00 0.00 4.12
4377 5045 0.456653 CGCACACTAAGCAATTGGGC 60.457 55.000 7.72 0.00 36.25 5.36
4378 5046 0.108662 GCACACTAAGCAATTGGGCC 60.109 55.000 7.72 0.00 33.27 5.80
4379 5047 1.549203 CACACTAAGCAATTGGGCCT 58.451 50.000 4.53 0.00 0.00 5.19
4380 5048 2.722094 CACACTAAGCAATTGGGCCTA 58.278 47.619 4.53 0.00 0.00 3.93
4381 5049 3.088532 CACACTAAGCAATTGGGCCTAA 58.911 45.455 3.11 3.11 0.00 2.69
4382 5050 3.129287 CACACTAAGCAATTGGGCCTAAG 59.871 47.826 7.87 0.00 0.00 2.18
4383 5051 3.010138 ACACTAAGCAATTGGGCCTAAGA 59.990 43.478 7.87 0.00 0.00 2.10
4384 5052 4.210331 CACTAAGCAATTGGGCCTAAGAT 58.790 43.478 7.87 0.00 0.00 2.40
4394 5062 7.011389 GCAATTGGGCCTAAGATAAAATTCAAC 59.989 37.037 7.87 0.00 0.00 3.18
4421 5089 9.926751 TTTTATCGAACGAAGTGTACTATCTAG 57.073 33.333 0.12 0.00 45.00 2.43
4433 5101 1.941294 ACTATCTAGACACCTCACGCG 59.059 52.381 3.53 3.53 0.00 6.01
4435 5103 0.680280 ATCTAGACACCTCACGCGGT 60.680 55.000 12.47 0.00 37.93 5.68
4448 5116 4.933064 GCGGTCGCCATCTCCTCG 62.933 72.222 3.73 0.00 34.56 4.63
4449 5117 4.933064 CGGTCGCCATCTCCTCGC 62.933 72.222 0.00 0.00 0.00 5.03
4479 5147 2.470057 TTTGGGTTCCTCTGCCTTTT 57.530 45.000 0.00 0.00 0.00 2.27
4482 5150 1.063266 TGGGTTCCTCTGCCTTTTGTT 60.063 47.619 0.00 0.00 0.00 2.83
4483 5151 2.175931 TGGGTTCCTCTGCCTTTTGTTA 59.824 45.455 0.00 0.00 0.00 2.41
4512 5180 2.196382 CTTGTCCGCCTCGTCTTCGA 62.196 60.000 0.00 0.00 44.12 3.71
4654 5332 7.769044 TCTTTAAAGATGGAATAAGGTTCTCCG 59.231 37.037 13.99 0.00 39.05 4.63
4663 5341 3.839432 GGTTCTCCGCGCCTAGCT 61.839 66.667 0.00 0.00 45.59 3.32
4685 5365 5.986135 GCTCTTATTTCGGTGATGTGTCTAT 59.014 40.000 0.00 0.00 0.00 1.98
4704 5384 2.108514 CATCATCAGCGGGCGTGTT 61.109 57.895 0.00 0.00 0.00 3.32
4739 5419 4.310769 CGATGGATCTATCTTTGGTGGAC 58.689 47.826 16.09 0.00 0.00 4.02
4747 5427 2.297698 TCTTTGGTGGACCTACTCGA 57.702 50.000 0.00 0.00 36.82 4.04
4835 5518 1.022451 TCAGCGGCGGTTGTTATTCC 61.022 55.000 9.73 0.00 0.00 3.01
4852 5535 8.795842 TGTTATTCCGGTACACTGATTTTATT 57.204 30.769 0.00 0.00 0.00 1.40
4853 5536 9.887629 TGTTATTCCGGTACACTGATTTTATTA 57.112 29.630 0.00 0.00 0.00 0.98
4857 5540 6.949715 TCCGGTACACTGATTTTATTAGGTT 58.050 36.000 0.00 0.00 0.00 3.50
4920 5603 2.646175 CGACTTCGGCAAGGGAGGA 61.646 63.158 0.00 0.00 33.37 3.71
5030 5714 5.557866 TCTGCCATGATTGAAGATGGATAG 58.442 41.667 9.55 7.08 41.63 2.08
5034 5718 7.692172 TGCCATGATTGAAGATGGATAGATTA 58.308 34.615 9.55 0.00 41.63 1.75
5035 5719 7.827729 TGCCATGATTGAAGATGGATAGATTAG 59.172 37.037 9.55 0.00 41.63 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.763223 AGGGTTGGTTGAGTCCGAGT 60.763 55.000 0.00 0.00 0.00 4.18
2 3 1.829222 GATAGGGTTGGTTGAGTCCGA 59.171 52.381 0.00 0.00 0.00 4.55
3 4 1.831736 AGATAGGGTTGGTTGAGTCCG 59.168 52.381 0.00 0.00 0.00 4.79
4 5 5.632034 ATAAGATAGGGTTGGTTGAGTCC 57.368 43.478 0.00 0.00 0.00 3.85
7 8 7.604657 ACTCTATAAGATAGGGTTGGTTGAG 57.395 40.000 0.00 0.00 0.00 3.02
8 9 7.792032 CAACTCTATAAGATAGGGTTGGTTGA 58.208 38.462 23.14 0.00 46.74 3.18
14 15 6.371278 TCGACCAACTCTATAAGATAGGGTT 58.629 40.000 6.01 6.01 38.68 4.11
15 16 5.950023 TCGACCAACTCTATAAGATAGGGT 58.050 41.667 0.00 0.00 0.00 4.34
16 17 6.659668 TCATCGACCAACTCTATAAGATAGGG 59.340 42.308 0.00 0.00 0.00 3.53
17 18 7.689446 TCATCGACCAACTCTATAAGATAGG 57.311 40.000 0.00 0.00 0.00 2.57
18 19 8.402472 GGATCATCGACCAACTCTATAAGATAG 58.598 40.741 0.00 0.00 0.00 2.08
19 20 8.110271 AGGATCATCGACCAACTCTATAAGATA 58.890 37.037 0.00 0.00 0.00 1.98
20 21 6.951198 AGGATCATCGACCAACTCTATAAGAT 59.049 38.462 0.00 0.00 0.00 2.40
21 22 6.207614 CAGGATCATCGACCAACTCTATAAGA 59.792 42.308 0.00 0.00 0.00 2.10
22 23 6.385843 CAGGATCATCGACCAACTCTATAAG 58.614 44.000 0.00 0.00 0.00 1.73
23 24 5.279006 GCAGGATCATCGACCAACTCTATAA 60.279 44.000 0.00 0.00 0.00 0.98
24 25 4.218635 GCAGGATCATCGACCAACTCTATA 59.781 45.833 0.00 0.00 0.00 1.31
25 26 3.006323 GCAGGATCATCGACCAACTCTAT 59.994 47.826 0.00 0.00 0.00 1.98
26 27 2.362397 GCAGGATCATCGACCAACTCTA 59.638 50.000 0.00 0.00 0.00 2.43
27 28 1.137872 GCAGGATCATCGACCAACTCT 59.862 52.381 0.00 0.00 0.00 3.24
28 29 1.576356 GCAGGATCATCGACCAACTC 58.424 55.000 0.00 0.00 0.00 3.01
29 30 0.179100 CGCAGGATCATCGACCAACT 60.179 55.000 0.00 0.00 0.00 3.16
30 31 1.766143 GCGCAGGATCATCGACCAAC 61.766 60.000 0.30 0.00 0.00 3.77
31 32 1.521457 GCGCAGGATCATCGACCAA 60.521 57.895 0.30 0.00 0.00 3.67
32 33 2.106938 GCGCAGGATCATCGACCA 59.893 61.111 0.30 0.00 0.00 4.02
33 34 2.663188 GGCGCAGGATCATCGACC 60.663 66.667 10.83 0.00 0.00 4.79
34 35 2.755542 ATCGGCGCAGGATCATCGAC 62.756 60.000 10.83 0.00 0.00 4.20
35 36 2.564721 ATCGGCGCAGGATCATCGA 61.565 57.895 10.83 6.66 0.00 3.59
36 37 2.048784 ATCGGCGCAGGATCATCG 60.049 61.111 10.83 0.00 0.00 3.84
37 38 0.601046 TTCATCGGCGCAGGATCATC 60.601 55.000 10.83 0.00 0.00 2.92
38 39 0.602106 CTTCATCGGCGCAGGATCAT 60.602 55.000 10.83 0.00 0.00 2.45
39 40 1.227350 CTTCATCGGCGCAGGATCA 60.227 57.895 10.83 0.00 0.00 2.92
40 41 1.958205 CCTTCATCGGCGCAGGATC 60.958 63.158 10.83 0.00 0.00 3.36
41 42 2.109799 CCTTCATCGGCGCAGGAT 59.890 61.111 10.83 8.74 0.00 3.24
42 43 4.161295 CCCTTCATCGGCGCAGGA 62.161 66.667 10.83 6.24 0.00 3.86
43 44 3.680620 TTCCCTTCATCGGCGCAGG 62.681 63.158 10.83 5.89 0.00 4.85
44 45 2.125147 TTCCCTTCATCGGCGCAG 60.125 61.111 10.83 5.07 0.00 5.18
45 46 2.125147 CTTCCCTTCATCGGCGCA 60.125 61.111 10.83 0.00 0.00 6.09
46 47 2.666596 ATCCTTCCCTTCATCGGCGC 62.667 60.000 0.00 0.00 0.00 6.53
47 48 0.882042 CATCCTTCCCTTCATCGGCG 60.882 60.000 0.00 0.00 0.00 6.46
48 49 0.181350 ACATCCTTCCCTTCATCGGC 59.819 55.000 0.00 0.00 0.00 5.54
49 50 1.202698 GGACATCCTTCCCTTCATCGG 60.203 57.143 0.00 0.00 0.00 4.18
50 51 1.539065 CGGACATCCTTCCCTTCATCG 60.539 57.143 0.00 0.00 31.03 3.84
51 52 1.811941 GCGGACATCCTTCCCTTCATC 60.812 57.143 0.00 0.00 31.03 2.92
52 53 0.181350 GCGGACATCCTTCCCTTCAT 59.819 55.000 0.00 0.00 31.03 2.57
53 54 0.909610 AGCGGACATCCTTCCCTTCA 60.910 55.000 0.00 0.00 31.03 3.02
54 55 0.253327 AAGCGGACATCCTTCCCTTC 59.747 55.000 0.00 0.00 31.03 3.46
55 56 1.486726 CTAAGCGGACATCCTTCCCTT 59.513 52.381 0.00 0.00 33.37 3.95
56 57 1.123928 CTAAGCGGACATCCTTCCCT 58.876 55.000 0.00 0.00 31.03 4.20
57 58 0.831307 ACTAAGCGGACATCCTTCCC 59.169 55.000 0.00 0.00 31.03 3.97
58 59 1.473434 CCACTAAGCGGACATCCTTCC 60.473 57.143 0.00 0.00 0.00 3.46
59 60 1.207329 ACCACTAAGCGGACATCCTTC 59.793 52.381 0.00 0.00 0.00 3.46
60 61 1.207329 GACCACTAAGCGGACATCCTT 59.793 52.381 0.00 0.00 0.00 3.36
61 62 0.824759 GACCACTAAGCGGACATCCT 59.175 55.000 0.00 0.00 0.00 3.24
62 63 0.179081 GGACCACTAAGCGGACATCC 60.179 60.000 0.00 0.00 0.00 3.51
63 64 0.824759 AGGACCACTAAGCGGACATC 59.175 55.000 0.00 0.00 0.00 3.06
64 65 0.537188 CAGGACCACTAAGCGGACAT 59.463 55.000 0.00 0.00 0.00 3.06
65 66 0.541063 TCAGGACCACTAAGCGGACA 60.541 55.000 0.00 0.00 0.00 4.02
66 67 0.606604 TTCAGGACCACTAAGCGGAC 59.393 55.000 0.00 0.00 0.00 4.79
67 68 0.606604 GTTCAGGACCACTAAGCGGA 59.393 55.000 0.00 0.00 0.00 5.54
68 69 0.608640 AGTTCAGGACCACTAAGCGG 59.391 55.000 0.00 0.00 0.00 5.52
69 70 1.272490 TCAGTTCAGGACCACTAAGCG 59.728 52.381 0.00 0.00 0.00 4.68
70 71 3.526534 GATCAGTTCAGGACCACTAAGC 58.473 50.000 0.00 0.00 0.00 3.09
71 72 3.772025 AGGATCAGTTCAGGACCACTAAG 59.228 47.826 0.00 0.00 0.00 2.18
72 73 3.791320 AGGATCAGTTCAGGACCACTAA 58.209 45.455 0.00 0.00 0.00 2.24
73 74 3.474798 AGGATCAGTTCAGGACCACTA 57.525 47.619 0.00 0.00 0.00 2.74
100 101 1.296056 CCCAAACCTAGCGTTGACCG 61.296 60.000 5.45 0.00 33.93 4.79
101 102 0.250597 ACCCAAACCTAGCGTTGACC 60.251 55.000 5.45 0.00 33.93 4.02
108 109 0.675522 TGCGCTAACCCAAACCTAGC 60.676 55.000 9.73 0.00 35.69 3.42
110 111 0.397187 TGTGCGCTAACCCAAACCTA 59.603 50.000 9.73 0.00 0.00 3.08
112 113 1.284715 GTGTGCGCTAACCCAAACC 59.715 57.895 9.73 0.00 0.00 3.27
114 115 3.752704 GGTGTGCGCTAACCCAAA 58.247 55.556 18.09 0.00 0.00 3.28
124 125 4.326766 CGCCAAACTGGGTGTGCG 62.327 66.667 0.00 0.00 38.19 5.34
126 127 3.977244 GGCGCCAAACTGGGTGTG 61.977 66.667 24.80 0.00 40.61 3.82
127 128 4.514585 TGGCGCCAAACTGGGTGT 62.515 61.111 30.74 0.00 40.61 4.16
136 137 1.073025 AAGTCAGATGTGGCGCCAA 59.927 52.632 34.66 21.87 31.53 4.52
140 141 1.291184 TTCGCAAGTCAGATGTGGCG 61.291 55.000 5.11 5.11 45.24 5.69
141 142 0.874390 TTTCGCAAGTCAGATGTGGC 59.126 50.000 0.00 0.00 39.48 5.01
146 147 0.037326 TCGGCTTTCGCAAGTCAGAT 60.037 50.000 0.00 0.00 33.83 2.90
156 157 1.721133 GCGTGTTGTTCGGCTTTCG 60.721 57.895 0.00 0.00 40.90 3.46
222 223 2.809174 CGCGCACGAGGATGACAA 60.809 61.111 8.75 0.00 43.93 3.18
251 252 1.096967 TAACTCGATAGTGGCGGCGA 61.097 55.000 12.98 0.00 35.62 5.54
256 257 3.806521 TCGTCTACTAACTCGATAGTGGC 59.193 47.826 8.63 2.77 36.78 5.01
262 263 2.915349 TGCCTCGTCTACTAACTCGAT 58.085 47.619 0.00 0.00 0.00 3.59
276 277 2.969806 AACGCATGCAGTTGCCTCG 61.970 57.895 19.57 0.00 39.52 4.63
286 287 1.226773 GAGGATTGCCAACGCATGC 60.227 57.895 7.91 7.91 46.67 4.06
313 314 0.329596 ACATGAAGGAGGAGGCAACC 59.670 55.000 0.00 0.00 37.17 3.77
314 315 2.087646 GAACATGAAGGAGGAGGCAAC 58.912 52.381 0.00 0.00 0.00 4.17
315 316 1.339055 CGAACATGAAGGAGGAGGCAA 60.339 52.381 0.00 0.00 0.00 4.52
324 328 1.063006 CATGCGGCGAACATGAAGG 59.937 57.895 18.72 0.00 46.33 3.46
387 391 0.826715 AGTCGACATCTCCACCATGG 59.173 55.000 19.50 11.19 39.43 3.66
400 404 0.093026 CGCGTCAAAATGGAGTCGAC 59.907 55.000 7.70 7.70 0.00 4.20
405 409 1.419922 CCGACGCGTCAAAATGGAG 59.580 57.895 35.71 18.19 0.00 3.86
426 430 4.166888 GAGCCAGCATCCTCGCCA 62.167 66.667 0.00 0.00 0.00 5.69
465 469 0.978146 AGGATGAGTCACCCTTCCCG 60.978 60.000 0.00 0.00 0.00 5.14
529 534 1.300971 TGAGTTGATGCTCAAGCGCC 61.301 55.000 2.29 0.00 45.83 6.53
535 540 4.548451 AGACAGATTGAGTTGATGCTCA 57.452 40.909 0.00 0.00 43.03 4.26
555 560 3.487574 GCGGATCGATAAAGAGTCACAAG 59.512 47.826 0.00 0.00 0.00 3.16
556 561 3.444916 GCGGATCGATAAAGAGTCACAA 58.555 45.455 0.00 0.00 0.00 3.33
561 566 1.269102 CCACGCGGATCGATAAAGAGT 60.269 52.381 12.47 0.00 41.67 3.24
562 567 1.409412 CCACGCGGATCGATAAAGAG 58.591 55.000 12.47 0.00 41.67 2.85
563 568 0.596600 GCCACGCGGATCGATAAAGA 60.597 55.000 12.47 0.00 41.67 2.52
564 569 1.557443 GGCCACGCGGATCGATAAAG 61.557 60.000 12.47 0.00 41.67 1.85
565 570 1.593209 GGCCACGCGGATCGATAAA 60.593 57.895 12.47 0.00 41.67 1.40
568 573 4.286320 GAGGCCACGCGGATCGAT 62.286 66.667 12.47 0.00 41.67 3.59
589 595 3.900855 CAGCATGCACACCTCCTC 58.099 61.111 21.98 0.00 0.00 3.71
601 607 1.220206 CGACAAGGAGGAGCAGCAT 59.780 57.895 0.00 0.00 0.00 3.79
620 626 1.159664 AGGTGGTGCTCTCCTCCTT 59.840 57.895 5.93 0.00 45.65 3.36
661 674 3.307108 TCGGCGTCCACCACATCA 61.307 61.111 6.85 0.00 0.00 3.07
663 676 4.735132 CGTCGGCGTCCACCACAT 62.735 66.667 6.85 0.00 0.00 3.21
715 729 2.519780 GGATCCTCTCGGTCGCCT 60.520 66.667 3.84 0.00 0.00 5.52
835 977 7.308830 GCTTTTCACAACCATCAGATTAGACTT 60.309 37.037 0.00 0.00 0.00 3.01
836 978 6.150140 GCTTTTCACAACCATCAGATTAGACT 59.850 38.462 0.00 0.00 0.00 3.24
837 979 6.150140 AGCTTTTCACAACCATCAGATTAGAC 59.850 38.462 0.00 0.00 0.00 2.59
838 980 6.240894 AGCTTTTCACAACCATCAGATTAGA 58.759 36.000 0.00 0.00 0.00 2.10
839 981 6.506500 AGCTTTTCACAACCATCAGATTAG 57.493 37.500 0.00 0.00 0.00 1.73
840 982 6.899393 AAGCTTTTCACAACCATCAGATTA 57.101 33.333 0.00 0.00 0.00 1.75
855 1017 7.295201 TGTTATATCACACGACAAAGCTTTTC 58.705 34.615 9.53 9.73 0.00 2.29
864 1026 6.073494 CCAACAGTTTGTTATATCACACGACA 60.073 38.462 0.00 0.00 38.77 4.35
1220 1848 2.768527 TCTCCAGGAATCAGCAAGTAGG 59.231 50.000 0.00 0.00 0.00 3.18
1227 1855 5.463724 CGTTACTTTATCTCCAGGAATCAGC 59.536 44.000 0.00 0.00 0.00 4.26
1229 1857 5.659525 TCCGTTACTTTATCTCCAGGAATCA 59.340 40.000 0.00 0.00 0.00 2.57
1419 2047 6.664816 TCAAGTGAAGGGAAAGCATTGAATAT 59.335 34.615 0.00 0.00 0.00 1.28
1497 2126 0.034186 TGCTCCCTAACCAATGGCAG 60.034 55.000 0.00 0.00 0.00 4.85
1505 2134 1.751351 GCATTTCCTTGCTCCCTAACC 59.249 52.381 0.00 0.00 39.57 2.85
1586 2216 0.179004 TCACCCAACCGTGCTTCAAT 60.179 50.000 0.00 0.00 33.57 2.57
1628 2258 8.822652 TGTAGATGATATGAGCACAAATACTG 57.177 34.615 0.00 0.00 0.00 2.74
1716 2350 7.392953 TGAGATGGACATACAAACAAAATGCTA 59.607 33.333 0.00 0.00 0.00 3.49
1721 2355 8.519526 GGTAATGAGATGGACATACAAACAAAA 58.480 33.333 0.00 0.00 0.00 2.44
1759 2393 5.929058 TGCTTAGATCTCTGAGAACATGT 57.071 39.130 12.00 0.00 31.92 3.21
1804 2438 0.388907 GCACAGCGCATTGTCCAAAT 60.389 50.000 11.47 0.00 41.79 2.32
2048 2685 6.591062 TGAATTTACAATGCCTTTGATTCTGC 59.409 34.615 3.71 0.00 38.76 4.26
2141 2778 5.529581 AAAATGAAAGTGTGGTTGGTAGG 57.470 39.130 0.00 0.00 0.00 3.18
2378 3015 8.131455 ACTGCACATGATTAAATAGACGTTAG 57.869 34.615 0.00 0.00 0.00 2.34
2697 3339 3.133141 AGGAAGACCAAAACAGAGAGC 57.867 47.619 0.00 0.00 38.94 4.09
2756 3398 9.638239 GGCAACAAAATGAATAGTAATTGAAGA 57.362 29.630 0.00 0.00 0.00 2.87
2787 3430 8.881262 AGGAGAAAAGAGGAGAATAACTACAAA 58.119 33.333 0.00 0.00 0.00 2.83
2814 3457 8.800370 TGCCAGATATTTGACACTGTAAATAA 57.200 30.769 0.00 0.00 33.81 1.40
2860 3503 4.431416 AATATCGGCAATGGTTACTGGA 57.569 40.909 0.00 0.00 0.00 3.86
2932 3575 1.871039 GCCTTTGTGAAGTCGCTGTAA 59.129 47.619 0.00 0.00 0.00 2.41
2980 3623 7.227156 AGAGAACAATACAGACCAGTGAAATT 58.773 34.615 0.00 0.00 0.00 1.82
2981 3624 6.773638 AGAGAACAATACAGACCAGTGAAAT 58.226 36.000 0.00 0.00 0.00 2.17
2984 3627 6.246163 TCTAGAGAACAATACAGACCAGTGA 58.754 40.000 0.00 0.00 0.00 3.41
2996 3639 7.768807 AGTAACTGTCACTCTAGAGAACAAT 57.231 36.000 26.57 15.77 31.28 2.71
2999 3642 8.136165 TGAAAAGTAACTGTCACTCTAGAGAAC 58.864 37.037 26.57 21.24 0.00 3.01
3012 3655 7.040409 GGGATTCTCAACATGAAAAGTAACTGT 60.040 37.037 0.00 0.00 0.00 3.55
3016 3659 6.434028 CCTGGGATTCTCAACATGAAAAGTAA 59.566 38.462 0.00 0.00 0.00 2.24
3024 3667 3.354948 TGACCTGGGATTCTCAACATG 57.645 47.619 0.00 0.00 0.00 3.21
3025 3668 5.919348 ATATGACCTGGGATTCTCAACAT 57.081 39.130 0.00 0.00 0.00 2.71
3026 3669 5.715439 AATATGACCTGGGATTCTCAACA 57.285 39.130 0.00 0.00 0.00 3.33
3027 3670 6.378280 ACAAAATATGACCTGGGATTCTCAAC 59.622 38.462 0.00 0.00 0.00 3.18
3028 3671 6.377996 CACAAAATATGACCTGGGATTCTCAA 59.622 38.462 0.00 0.00 0.00 3.02
3029 3672 5.887598 CACAAAATATGACCTGGGATTCTCA 59.112 40.000 0.00 0.00 0.00 3.27
3030 3673 5.888161 ACACAAAATATGACCTGGGATTCTC 59.112 40.000 0.00 0.00 0.00 2.87
3031 3674 5.831103 ACACAAAATATGACCTGGGATTCT 58.169 37.500 0.00 0.00 0.00 2.40
3032 3675 6.530019 AACACAAAATATGACCTGGGATTC 57.470 37.500 0.00 0.00 0.00 2.52
3033 3676 6.379988 GGTAACACAAAATATGACCTGGGATT 59.620 38.462 0.00 0.00 0.00 3.01
3034 3677 5.891551 GGTAACACAAAATATGACCTGGGAT 59.108 40.000 0.00 0.00 0.00 3.85
3035 3678 5.222151 TGGTAACACAAAATATGACCTGGGA 60.222 40.000 0.00 0.00 46.17 4.37
3036 3679 5.013547 TGGTAACACAAAATATGACCTGGG 58.986 41.667 0.00 0.00 46.17 4.45
3085 3728 4.393062 CCACTCACCATACAGTCATTTGAC 59.607 45.833 2.41 2.41 45.08 3.18
3094 3737 5.344743 ACTATTCACCACTCACCATACAG 57.655 43.478 0.00 0.00 0.00 2.74
3099 3742 3.513912 CAGGTACTATTCACCACTCACCA 59.486 47.826 0.00 0.00 38.62 4.17
3100 3743 3.679083 GCAGGTACTATTCACCACTCACC 60.679 52.174 0.00 0.00 38.62 4.02
3135 3778 5.535753 ATGCCTTTTTGCTTCACTTAGTT 57.464 34.783 0.00 0.00 0.00 2.24
3136 3779 6.265422 AGTTATGCCTTTTTGCTTCACTTAGT 59.735 34.615 0.00 0.00 0.00 2.24
3137 3780 6.681777 AGTTATGCCTTTTTGCTTCACTTAG 58.318 36.000 0.00 0.00 0.00 2.18
3138 3781 6.648879 AGTTATGCCTTTTTGCTTCACTTA 57.351 33.333 0.00 0.00 0.00 2.24
3139 3782 5.535753 AGTTATGCCTTTTTGCTTCACTT 57.464 34.783 0.00 0.00 0.00 3.16
3140 3783 6.648879 TTAGTTATGCCTTTTTGCTTCACT 57.351 33.333 0.00 0.00 30.74 3.41
3175 3818 6.823182 TCAAAAACTGAAAGAGTCATCTGTCA 59.177 34.615 8.31 0.00 45.79 3.58
3182 3825 6.350110 CCCTTTGTCAAAAACTGAAAGAGTCA 60.350 38.462 0.00 0.00 35.22 3.41
3203 3846 8.595362 AAGAAAAACTAGCTTAATATGCCCTT 57.405 30.769 0.00 0.00 0.00 3.95
3276 3939 3.279434 GAGGGAGCATTCCGTAATTGTT 58.721 45.455 0.00 0.00 40.64 2.83
3285 3948 2.367202 TGGACGGAGGGAGCATTCC 61.367 63.158 0.00 0.00 43.23 3.01
3290 3953 0.539986 TATTTGTGGACGGAGGGAGC 59.460 55.000 0.00 0.00 0.00 4.70
3327 3990 8.501580 CGTGTCTATATACATCCGACTAAGAAA 58.498 37.037 0.00 0.00 0.00 2.52
3329 3992 7.157347 ACGTGTCTATATACATCCGACTAAGA 58.843 38.462 7.85 0.00 0.00 2.10
3330 3993 7.361889 ACGTGTCTATATACATCCGACTAAG 57.638 40.000 7.85 0.00 0.00 2.18
3331 3994 7.734924 AACGTGTCTATATACATCCGACTAA 57.265 36.000 7.85 0.00 0.00 2.24
3332 3995 7.734924 AAACGTGTCTATATACATCCGACTA 57.265 36.000 7.85 0.00 0.00 2.59
3333 3996 6.630444 AAACGTGTCTATATACATCCGACT 57.370 37.500 7.85 0.00 0.00 4.18
3334 3997 8.072567 ACTTAAACGTGTCTATATACATCCGAC 58.927 37.037 7.85 0.00 0.00 4.79
3335 3998 8.071967 CACTTAAACGTGTCTATATACATCCGA 58.928 37.037 7.85 0.00 0.00 4.55
3336 3999 7.859377 ACACTTAAACGTGTCTATATACATCCG 59.141 37.037 0.00 0.00 44.32 4.18
3337 4000 8.965172 CACACTTAAACGTGTCTATATACATCC 58.035 37.037 0.00 0.00 45.74 3.51
3338 4001 9.512435 ACACACTTAAACGTGTCTATATACATC 57.488 33.333 4.19 0.00 45.74 3.06
3339 4002 9.865321 AACACACTTAAACGTGTCTATATACAT 57.135 29.630 9.36 0.00 45.74 2.29
3340 4003 9.695526 AAACACACTTAAACGTGTCTATATACA 57.304 29.630 9.36 0.00 45.74 2.29
3341 4004 9.947897 CAAACACACTTAAACGTGTCTATATAC 57.052 33.333 9.36 0.00 45.74 1.47
3342 4005 9.695526 ACAAACACACTTAAACGTGTCTATATA 57.304 29.630 9.36 0.00 45.74 0.86
3343 4006 8.597662 ACAAACACACTTAAACGTGTCTATAT 57.402 30.769 9.36 0.00 45.74 0.86
3345 4008 6.913873 ACAAACACACTTAAACGTGTCTAT 57.086 33.333 9.36 0.00 45.74 1.98
3346 4009 6.368243 TGAACAAACACACTTAAACGTGTCTA 59.632 34.615 9.36 0.00 45.74 2.59
3350 4013 5.387279 AGTGAACAAACACACTTAAACGTG 58.613 37.500 0.00 3.05 43.52 4.49
3351 4014 5.179742 TGAGTGAACAAACACACTTAAACGT 59.820 36.000 0.00 0.00 45.54 3.99
3352 4015 5.623335 TGAGTGAACAAACACACTTAAACG 58.377 37.500 0.00 0.00 45.54 3.60
3353 4016 8.460831 AAATGAGTGAACAAACACACTTAAAC 57.539 30.769 0.00 0.00 45.54 2.01
3354 4017 8.300286 TGAAATGAGTGAACAAACACACTTAAA 58.700 29.630 0.00 0.00 45.54 1.52
3355 4018 7.821652 TGAAATGAGTGAACAAACACACTTAA 58.178 30.769 0.00 0.00 45.54 1.85
3356 4019 7.120579 ACTGAAATGAGTGAACAAACACACTTA 59.879 33.333 0.00 0.00 45.54 2.24
3357 4020 6.071952 ACTGAAATGAGTGAACAAACACACTT 60.072 34.615 0.00 0.00 45.54 3.16
3359 4022 5.640732 ACTGAAATGAGTGAACAAACACAC 58.359 37.500 0.00 0.00 42.45 3.82
3360 4023 5.647658 AGACTGAAATGAGTGAACAAACACA 59.352 36.000 0.00 0.00 42.45 3.72
3361 4024 5.967674 CAGACTGAAATGAGTGAACAAACAC 59.032 40.000 0.00 0.00 40.60 3.32
3362 4025 5.647658 ACAGACTGAAATGAGTGAACAAACA 59.352 36.000 10.08 0.00 0.00 2.83
3363 4026 6.124088 ACAGACTGAAATGAGTGAACAAAC 57.876 37.500 10.08 0.00 0.00 2.93
3364 4027 7.498900 ACATACAGACTGAAATGAGTGAACAAA 59.501 33.333 21.47 0.00 0.00 2.83
3365 4028 6.992123 ACATACAGACTGAAATGAGTGAACAA 59.008 34.615 21.47 0.00 0.00 2.83
3366 4029 6.524734 ACATACAGACTGAAATGAGTGAACA 58.475 36.000 21.47 0.00 0.00 3.18
3367 4030 7.815068 ACTACATACAGACTGAAATGAGTGAAC 59.185 37.037 21.47 0.00 0.00 3.18
3368 4031 7.896811 ACTACATACAGACTGAAATGAGTGAA 58.103 34.615 21.47 7.35 0.00 3.18
3391 4054 9.988815 GATGTTCTGGATATTTCAGTATGTACT 57.011 33.333 0.00 0.00 37.40 2.73
3392 4055 9.988815 AGATGTTCTGGATATTTCAGTATGTAC 57.011 33.333 6.83 0.00 37.40 2.90
3407 4070 9.104965 CCGTTTACAAATATAAGATGTTCTGGA 57.895 33.333 0.00 0.00 0.00 3.86
3408 4071 9.104965 TCCGTTTACAAATATAAGATGTTCTGG 57.895 33.333 0.00 0.00 0.00 3.86
3410 4073 9.326413 CCTCCGTTTACAAATATAAGATGTTCT 57.674 33.333 0.00 0.00 0.00 3.01
3411 4074 8.557029 CCCTCCGTTTACAAATATAAGATGTTC 58.443 37.037 0.00 0.00 0.00 3.18
3412 4075 8.269317 TCCCTCCGTTTACAAATATAAGATGTT 58.731 33.333 0.00 0.00 0.00 2.71
3413 4076 7.798071 TCCCTCCGTTTACAAATATAAGATGT 58.202 34.615 0.00 0.00 0.00 3.06
3414 4077 7.931948 ACTCCCTCCGTTTACAAATATAAGATG 59.068 37.037 0.00 0.00 0.00 2.90
3415 4078 8.030913 ACTCCCTCCGTTTACAAATATAAGAT 57.969 34.615 0.00 0.00 0.00 2.40
3416 4079 7.427989 ACTCCCTCCGTTTACAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
3417 4080 8.419442 ACTACTCCCTCCGTTTACAAATATAAG 58.581 37.037 0.00 0.00 0.00 1.73
3418 4081 8.310122 ACTACTCCCTCCGTTTACAAATATAA 57.690 34.615 0.00 0.00 0.00 0.98
3419 4082 7.902920 ACTACTCCCTCCGTTTACAAATATA 57.097 36.000 0.00 0.00 0.00 0.86
3420 4083 6.803366 ACTACTCCCTCCGTTTACAAATAT 57.197 37.500 0.00 0.00 0.00 1.28
3421 4084 6.610075 AACTACTCCCTCCGTTTACAAATA 57.390 37.500 0.00 0.00 0.00 1.40
3422 4085 5.494390 AACTACTCCCTCCGTTTACAAAT 57.506 39.130 0.00 0.00 0.00 2.32
3423 4086 4.961438 AACTACTCCCTCCGTTTACAAA 57.039 40.909 0.00 0.00 0.00 2.83
3424 4087 5.304101 TGTTAACTACTCCCTCCGTTTACAA 59.696 40.000 7.22 0.00 29.47 2.41
3425 4088 4.832266 TGTTAACTACTCCCTCCGTTTACA 59.168 41.667 7.22 0.00 29.77 2.41
3426 4089 5.391312 TGTTAACTACTCCCTCCGTTTAC 57.609 43.478 7.22 0.00 0.00 2.01
3427 4090 5.127682 GGATGTTAACTACTCCCTCCGTTTA 59.872 44.000 7.22 0.00 0.00 2.01
3428 4091 4.081254 GGATGTTAACTACTCCCTCCGTTT 60.081 45.833 7.22 0.00 0.00 3.60
3429 4092 3.450096 GGATGTTAACTACTCCCTCCGTT 59.550 47.826 7.22 0.00 0.00 4.44
3451 4114 4.494199 GGCTACACATAAAAGCAGCTAACG 60.494 45.833 0.00 0.00 38.01 3.18
3466 4129 3.148412 TGACTAGTAACACGGCTACACA 58.852 45.455 0.00 0.00 0.00 3.72
3495 4158 4.921515 TCTATTTCACACGTACTCTTGTGC 59.078 41.667 12.08 0.00 41.54 4.57
3506 4169 4.631377 TCTTGAAGCCATCTATTTCACACG 59.369 41.667 0.00 0.00 31.11 4.49
3536 4199 7.295201 CCTGAAATTTGAAACATTTGAGCATG 58.705 34.615 0.00 0.00 0.00 4.06
3584 4247 1.869767 GGATCAGCAATTCTAGCACCG 59.130 52.381 0.00 0.00 0.00 4.94
3650 4313 0.817654 GGTTGCATACCTTTCCCTGC 59.182 55.000 9.89 0.00 44.10 4.85
3669 4332 7.148573 GGTCATGGTAGTTCATTAGAATATGCG 60.149 40.741 0.00 0.00 35.92 4.73
3697 4360 6.655425 AGACAGGAGGTTAAGCTTTGAATTAC 59.345 38.462 20.27 3.07 0.00 1.89
3698 4361 6.779860 AGACAGGAGGTTAAGCTTTGAATTA 58.220 36.000 20.27 0.00 0.00 1.40
3699 4362 5.635120 AGACAGGAGGTTAAGCTTTGAATT 58.365 37.500 20.27 4.95 0.00 2.17
3736 4399 3.821600 CCAGGACTACGCTATGATACACT 59.178 47.826 0.00 0.00 0.00 3.55
3741 4404 4.443034 GGTTTTCCAGGACTACGCTATGAT 60.443 45.833 0.00 0.00 40.31 2.45
3744 4407 2.835764 TGGTTTTCCAGGACTACGCTAT 59.164 45.455 0.00 0.00 46.22 2.97
3745 4408 2.250031 TGGTTTTCCAGGACTACGCTA 58.750 47.619 0.00 0.00 46.22 4.26
3875 4543 5.124297 TGCATGACATCAAAGATGTAACAGG 59.876 40.000 12.19 9.94 31.52 4.00
3876 4544 6.185852 TGCATGACATCAAAGATGTAACAG 57.814 37.500 12.19 4.09 31.52 3.16
3877 4545 6.404954 CCATGCATGACATCAAAGATGTAACA 60.405 38.462 28.31 8.02 36.64 2.41
3947 4615 7.003402 TGCACCCTAAAGCAAAAGAAATATT 57.997 32.000 0.00 0.00 37.90 1.28
4029 4697 1.123655 GCAACGTTTCAAGCTGCTTC 58.876 50.000 12.82 0.00 0.00 3.86
4063 4731 6.377429 TGACCACTCCTACTTACAACTCATAG 59.623 42.308 0.00 0.00 0.00 2.23
4076 4744 1.144057 CCGGCATGACCACTCCTAC 59.856 63.158 0.00 0.00 39.03 3.18
4085 4753 1.136057 GTTCGAAGAAACCGGCATGAC 60.136 52.381 0.00 0.00 45.90 3.06
4101 4769 4.977741 TTAACTACTTTTCAGCGGTTCG 57.022 40.909 0.00 0.00 0.00 3.95
4153 4821 2.158841 ACTAGTGCAACGCATTTAACGG 59.841 45.455 0.00 0.00 45.86 4.44
4181 4849 4.641989 CAGTTATCCTCAAACCATGGGAAG 59.358 45.833 18.09 7.29 33.73 3.46
4199 4867 5.942961 TGGGGTAGTGTTCAAAATCAGTTA 58.057 37.500 0.00 0.00 0.00 2.24
4232 4900 5.473931 CGGGGTACATAGAATTGAGATCTG 58.526 45.833 0.00 0.00 0.00 2.90
4244 4912 4.988065 CCGATGCGGGGTACATAG 57.012 61.111 0.00 0.00 44.15 2.23
4261 4929 3.187432 GTGCTGGTAGAAGAAGACTTTGC 59.813 47.826 0.00 0.00 36.39 3.68
4271 4939 3.062763 CTCACACAAGTGCTGGTAGAAG 58.937 50.000 0.00 0.00 45.49 2.85
4276 4944 1.526917 GGCTCACACAAGTGCTGGT 60.527 57.895 0.00 0.00 45.49 4.00
4277 4945 1.102809 TTGGCTCACACAAGTGCTGG 61.103 55.000 0.00 0.00 45.49 4.85
4278 4946 0.740149 TTTGGCTCACACAAGTGCTG 59.260 50.000 0.00 0.00 45.49 4.41
4279 4947 1.027357 CTTTGGCTCACACAAGTGCT 58.973 50.000 0.00 0.00 45.49 4.40
4280 4948 1.002033 CTCTTTGGCTCACACAAGTGC 60.002 52.381 0.00 0.00 45.49 4.40
4282 4950 1.972872 CCTCTTTGGCTCACACAAGT 58.027 50.000 0.00 0.00 0.00 3.16
4293 4961 2.358737 ACGCCTTCGCCTCTTTGG 60.359 61.111 0.00 0.00 39.84 3.28
4294 4962 2.863153 CACGCCTTCGCCTCTTTG 59.137 61.111 0.00 0.00 39.84 2.77
4295 4963 3.050275 GCACGCCTTCGCCTCTTT 61.050 61.111 0.00 0.00 39.84 2.52
4309 4977 0.816825 ATGAGTGATGATGGCGGCAC 60.817 55.000 16.34 9.31 0.00 5.01
4310 4978 0.107066 AATGAGTGATGATGGCGGCA 60.107 50.000 16.34 16.34 0.00 5.69
4311 4979 0.590195 GAATGAGTGATGATGGCGGC 59.410 55.000 0.00 0.00 0.00 6.53
4312 4980 1.202734 AGGAATGAGTGATGATGGCGG 60.203 52.381 0.00 0.00 0.00 6.13
4313 4981 2.251409 AGGAATGAGTGATGATGGCG 57.749 50.000 0.00 0.00 0.00 5.69
4314 4982 3.817647 GGTAAGGAATGAGTGATGATGGC 59.182 47.826 0.00 0.00 0.00 4.40
4315 4983 5.039920 TGGTAAGGAATGAGTGATGATGG 57.960 43.478 0.00 0.00 0.00 3.51
4316 4984 5.922053 TCTGGTAAGGAATGAGTGATGATG 58.078 41.667 0.00 0.00 0.00 3.07
4317 4985 5.454471 GCTCTGGTAAGGAATGAGTGATGAT 60.454 44.000 0.00 0.00 0.00 2.45
4318 4986 4.141846 GCTCTGGTAAGGAATGAGTGATGA 60.142 45.833 0.00 0.00 0.00 2.92
4319 4987 4.125703 GCTCTGGTAAGGAATGAGTGATG 58.874 47.826 0.00 0.00 0.00 3.07
4320 4988 4.036518 AGCTCTGGTAAGGAATGAGTGAT 58.963 43.478 0.00 0.00 0.00 3.06
4321 4989 3.196469 CAGCTCTGGTAAGGAATGAGTGA 59.804 47.826 0.00 0.00 0.00 3.41
4322 4990 3.529533 CAGCTCTGGTAAGGAATGAGTG 58.470 50.000 0.00 0.00 0.00 3.51
4323 4991 2.503356 CCAGCTCTGGTAAGGAATGAGT 59.497 50.000 7.75 0.00 45.53 3.41
4324 4992 3.191078 CCAGCTCTGGTAAGGAATGAG 57.809 52.381 7.75 0.00 45.53 2.90
4336 5004 4.426112 TGCGCGTCTCCAGCTCTG 62.426 66.667 8.43 0.00 0.00 3.35
4337 5005 4.427661 GTGCGCGTCTCCAGCTCT 62.428 66.667 8.43 0.00 0.00 4.09
4350 5018 3.614024 CTTAGTGTGCGTGCGTGCG 62.614 63.158 0.00 0.00 37.81 5.34
4351 5019 2.170985 CTTAGTGTGCGTGCGTGC 59.829 61.111 0.00 0.00 0.00 5.34
4352 5020 2.100024 TTGCTTAGTGTGCGTGCGTG 62.100 55.000 0.00 0.00 0.00 5.34
4353 5021 1.227999 ATTGCTTAGTGTGCGTGCGT 61.228 50.000 0.00 0.00 0.00 5.24
4354 5022 0.110238 AATTGCTTAGTGTGCGTGCG 60.110 50.000 0.00 0.00 0.00 5.34
4355 5023 1.330306 CAATTGCTTAGTGTGCGTGC 58.670 50.000 0.00 0.00 0.00 5.34
4356 5024 1.401409 CCCAATTGCTTAGTGTGCGTG 60.401 52.381 0.00 0.00 0.00 5.34
4357 5025 0.881118 CCCAATTGCTTAGTGTGCGT 59.119 50.000 0.00 0.00 0.00 5.24
4358 5026 0.456653 GCCCAATTGCTTAGTGTGCG 60.457 55.000 0.00 0.00 0.00 5.34
4359 5027 0.108662 GGCCCAATTGCTTAGTGTGC 60.109 55.000 0.00 0.00 0.00 4.57
4360 5028 1.549203 AGGCCCAATTGCTTAGTGTG 58.451 50.000 0.00 0.00 0.00 3.82
4361 5029 3.010138 TCTTAGGCCCAATTGCTTAGTGT 59.990 43.478 0.00 0.00 0.00 3.55
4362 5030 3.620488 TCTTAGGCCCAATTGCTTAGTG 58.380 45.455 0.00 0.00 0.00 2.74
4363 5031 4.526438 ATCTTAGGCCCAATTGCTTAGT 57.474 40.909 0.00 0.00 0.00 2.24
4364 5032 6.959639 TTTATCTTAGGCCCAATTGCTTAG 57.040 37.500 0.00 0.00 0.00 2.18
4365 5033 7.912778 ATTTTATCTTAGGCCCAATTGCTTA 57.087 32.000 0.00 0.00 0.00 3.09
4366 5034 6.813293 ATTTTATCTTAGGCCCAATTGCTT 57.187 33.333 0.00 0.00 0.00 3.91
4367 5035 6.383726 TGAATTTTATCTTAGGCCCAATTGCT 59.616 34.615 0.00 0.00 0.00 3.91
4368 5036 6.581712 TGAATTTTATCTTAGGCCCAATTGC 58.418 36.000 0.00 0.00 0.00 3.56
4369 5037 8.260114 AGTTGAATTTTATCTTAGGCCCAATTG 58.740 33.333 0.00 0.00 0.00 2.32
4370 5038 8.379428 AGTTGAATTTTATCTTAGGCCCAATT 57.621 30.769 0.00 0.00 0.00 2.32
4371 5039 7.978099 AGTTGAATTTTATCTTAGGCCCAAT 57.022 32.000 0.00 0.00 0.00 3.16
4372 5040 7.790782 AAGTTGAATTTTATCTTAGGCCCAA 57.209 32.000 0.00 0.00 0.00 4.12
4373 5041 7.790782 AAAGTTGAATTTTATCTTAGGCCCA 57.209 32.000 0.00 0.00 0.00 5.36
4394 5062 8.838452 AGATAGTACACTTCGTTCGATAAAAG 57.162 34.615 0.00 0.00 0.00 2.27
4401 5069 6.184015 GTGTCTAGATAGTACACTTCGTTCG 58.816 44.000 0.00 0.00 40.25 3.95
4433 5101 4.593864 GGCGAGGAGATGGCGACC 62.594 72.222 0.00 0.00 32.50 4.79
4494 5162 2.257371 CGAAGACGAGGCGGACAA 59.743 61.111 0.00 0.00 42.66 3.18
4495 5163 2.670592 TCGAAGACGAGGCGGACA 60.671 61.111 0.00 0.00 43.81 4.02
4512 5180 2.412591 CCCTCATGACCCTAAGACCAT 58.587 52.381 0.00 0.00 0.00 3.55
4586 5255 5.482526 AGGACACAAACCCTAACAAAACTTT 59.517 36.000 0.00 0.00 0.00 2.66
4621 5290 0.657840 CCATCTTTAAAGAGCCGCCG 59.342 55.000 21.75 7.15 38.66 6.46
4654 5332 1.140816 CCGAAATAAGAGCTAGGCGC 58.859 55.000 0.00 0.00 39.57 6.53
4663 5341 7.107639 TGATAGACACATCACCGAAATAAGA 57.892 36.000 0.00 0.00 29.93 2.10
4685 5365 2.202919 CACGCCCGCTGATGATGA 60.203 61.111 0.00 0.00 0.00 2.92
4704 5384 1.639722 TCCATCGGAGAAACACCTCA 58.360 50.000 0.00 0.00 43.58 3.86
4739 5419 1.334243 GGACGACCAGATTCGAGTAGG 59.666 57.143 0.00 0.00 41.78 3.18
4747 5427 4.651503 ACATAGATGAAGGACGACCAGATT 59.348 41.667 6.71 0.00 38.94 2.40
4811 5494 1.169661 AACAACCGCCGCTGATGAAA 61.170 50.000 0.00 0.00 0.00 2.69
4852 5535 6.209986 TCAGGAAGTCTTCGTGATAAAACCTA 59.790 38.462 26.50 8.18 46.16 3.08
4853 5536 5.011738 TCAGGAAGTCTTCGTGATAAAACCT 59.988 40.000 26.50 5.33 46.16 3.50
4920 5603 3.356639 ATGCGTCGCCGTCATCACT 62.357 57.895 15.88 0.00 36.15 3.41
4937 5620 1.140589 CACTGAAGCGAGCCGAGAT 59.859 57.895 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.