Multiple sequence alignment - TraesCS7A01G260100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G260100 chr7A 100.000 6754 0 0 1 6754 252174765 252181518 0.000000e+00 12473.0
1 TraesCS7A01G260100 chr7B 97.318 3841 92 8 3 3835 213453936 213457773 0.000000e+00 6512.0
2 TraesCS7A01G260100 chr7B 97.461 1418 20 5 4799 6204 213458926 213460339 0.000000e+00 2405.0
3 TraesCS7A01G260100 chr7B 95.091 876 25 5 3935 4808 213457782 213458641 0.000000e+00 1363.0
4 TraesCS7A01G260100 chr7B 99.408 338 1 1 6417 6754 213460323 213460659 4.480000e-171 612.0
5 TraesCS7A01G260100 chr7B 96.774 217 4 3 6204 6420 312816315 312816528 6.440000e-95 359.0
6 TraesCS7A01G260100 chr7B 97.973 148 2 1 6193 6340 273830989 273831135 8.690000e-64 255.0
7 TraesCS7A01G260100 chr7B 94.595 111 6 0 3634 3744 357651484 357651594 9.010000e-39 172.0
8 TraesCS7A01G260100 chr7B 98.551 69 1 0 3836 3904 105227069 105227137 9.200000e-24 122.0
9 TraesCS7A01G260100 chr7D 96.967 3858 83 13 1 3835 236817891 236821737 0.000000e+00 6445.0
10 TraesCS7A01G260100 chr7D 97.456 1415 24 4 4799 6204 236822889 236824300 0.000000e+00 2403.0
11 TraesCS7A01G260100 chr7D 95.213 773 21 4 4035 4802 236821807 236822568 0.000000e+00 1208.0
12 TraesCS7A01G260100 chr7D 99.401 334 2 0 6417 6750 236824284 236824617 2.080000e-169 606.0
13 TraesCS7A01G260100 chr7D 97.973 148 2 1 6194 6340 231420891 231421038 8.690000e-64 255.0
14 TraesCS7A01G260100 chr7D 94.340 53 3 0 3949 4001 236821753 236821805 1.560000e-11 82.4
15 TraesCS7A01G260100 chr2B 100.000 142 0 0 6199 6340 185381591 185381450 5.190000e-66 263.0
16 TraesCS7A01G260100 chr2D 98.630 146 2 0 6195 6340 106329386 106329531 6.720000e-65 259.0
17 TraesCS7A01G260100 chr6A 98.611 144 2 0 6197 6340 178522560 178522417 8.690000e-64 255.0
18 TraesCS7A01G260100 chr6A 92.784 97 3 4 6341 6434 60432979 60432884 3.280000e-28 137.0
19 TraesCS7A01G260100 chr1B 97.973 148 2 1 6194 6340 511473953 511474100 8.690000e-64 255.0
20 TraesCS7A01G260100 chr1B 96.739 92 0 3 6341 6430 480526099 480526009 4.220000e-32 150.0
21 TraesCS7A01G260100 chr5B 97.945 146 3 0 6195 6340 325064224 325064369 3.130000e-63 254.0
22 TraesCS7A01G260100 chr5B 92.000 100 3 4 6341 6435 659819058 659818959 1.180000e-27 135.0
23 TraesCS7A01G260100 chr2A 97.959 147 1 2 6194 6340 283760522 283760666 3.130000e-63 254.0
24 TraesCS7A01G260100 chr2A 96.078 102 4 0 3634 3735 205917600 205917701 4.190000e-37 167.0
25 TraesCS7A01G260100 chr2A 93.814 97 2 4 6341 6434 754457904 754457809 7.060000e-30 143.0
26 TraesCS7A01G260100 chr2A 92.857 98 4 3 6341 6436 101854940 101854844 9.130000e-29 139.0
27 TraesCS7A01G260100 chr4B 94.393 107 6 0 3631 3737 215918324 215918430 1.510000e-36 165.0
28 TraesCS7A01G260100 chr4B 100.000 80 0 0 6341 6420 87401130 87401051 1.520000e-31 148.0
29 TraesCS7A01G260100 chr4B 95.349 43 0 2 3896 3938 625352790 625352830 4.370000e-07 67.6
30 TraesCS7A01G260100 chr3B 93.636 110 7 0 3631 3740 157237741 157237632 1.510000e-36 165.0
31 TraesCS7A01G260100 chr3B 95.192 104 4 1 3634 3737 672778079 672778181 5.420000e-36 163.0
32 TraesCS7A01G260100 chr3B 93.617 94 3 3 6341 6433 341950157 341950066 3.280000e-28 137.0
33 TraesCS7A01G260100 chr4D 92.727 110 8 0 3631 3740 169123004 169122895 7.010000e-35 159.0
34 TraesCS7A01G260100 chr1A 91.743 109 9 0 3629 3737 282548739 282548847 1.170000e-32 152.0
35 TraesCS7A01G260100 chr1A 95.604 91 2 1 6341 6429 108777755 108777845 1.960000e-30 145.0
36 TraesCS7A01G260100 chrUn 100.000 69 0 0 3836 3904 365939766 365939698 1.980000e-25 128.0
37 TraesCS7A01G260100 chrUn 100.000 69 0 0 3836 3904 459459177 459459245 1.980000e-25 128.0
38 TraesCS7A01G260100 chrUn 97.297 37 0 1 3902 3938 365939686 365939651 2.030000e-05 62.1
39 TraesCS7A01G260100 chrUn 97.297 37 0 1 3902 3938 459459257 459459292 2.030000e-05 62.1
40 TraesCS7A01G260100 chr6D 100.000 69 0 0 3836 3904 82029131 82029199 1.980000e-25 128.0
41 TraesCS7A01G260100 chr6D 98.551 69 1 0 3836 3904 389245152 389245220 9.200000e-24 122.0
42 TraesCS7A01G260100 chr6D 97.101 69 2 0 3836 3904 172742904 172742972 4.280000e-22 117.0
43 TraesCS7A01G260100 chr6D 100.000 62 0 0 3843 3904 204104584 204104523 1.540000e-21 115.0
44 TraesCS7A01G260100 chr6D 95.000 40 1 1 3899 3938 429815934 429815972 2.030000e-05 62.1
45 TraesCS7A01G260100 chr5D 100.000 69 0 0 3836 3904 503245942 503245874 1.980000e-25 128.0
46 TraesCS7A01G260100 chr5D 100.000 69 0 0 3836 3904 503264106 503264174 1.980000e-25 128.0
47 TraesCS7A01G260100 chr5D 100.000 69 0 0 3836 3904 523002550 523002618 1.980000e-25 128.0
48 TraesCS7A01G260100 chr1D 100.000 69 0 0 3836 3904 51913454 51913522 1.980000e-25 128.0
49 TraesCS7A01G260100 chr1D 100.000 69 0 0 3836 3904 168740978 168740910 1.980000e-25 128.0
50 TraesCS7A01G260100 chr4A 88.496 113 2 3 3836 3938 204983567 204983678 7.110000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G260100 chr7A 252174765 252181518 6753 False 12473.00 12473 100.0000 1 6754 1 chr7A.!!$F1 6753
1 TraesCS7A01G260100 chr7B 213453936 213460659 6723 False 2723.00 6512 97.3195 3 6754 4 chr7B.!!$F5 6751
2 TraesCS7A01G260100 chr7D 236817891 236824617 6726 False 2148.88 6445 96.6754 1 6750 5 chr7D.!!$F2 6749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 186 0.238289 CCACAAATGCGAGGTGACAC 59.762 55.000 0.00 0.00 34.52 3.67 F
389 393 0.451783 GTGGCCGGAAATAGCAACTG 59.548 55.000 5.05 0.00 29.81 3.16 F
414 425 2.005560 GCCCAGGAAACTACTACACGC 61.006 57.143 0.00 0.00 40.21 5.34 F
2206 2230 1.974265 TCCAAGTTCAACGCCATCAA 58.026 45.000 0.00 0.00 0.00 2.57 F
3862 3886 0.104197 ATCCTCTTCCCCAGGGATCC 60.104 60.000 7.25 1.92 44.74 3.36 F
3931 3955 0.257039 ATCTGACCAACTGCCCATCC 59.743 55.000 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2135 2159 1.308998 CGAGGTGTTTTGGCACTTCT 58.691 50.000 6.73 0.0 41.46 2.85 R
2206 2230 2.568623 ATGTCTTGAGCCGGTTTTCT 57.431 45.000 1.90 0.0 0.00 2.52 R
2343 2367 5.488341 TCAGTAGGTAGTTCTGCAAATTCC 58.512 41.667 0.00 0.0 0.00 3.01 R
3961 3985 0.036952 CACAGTTCAGGATGGCGAGT 60.037 55.000 0.00 0.0 36.16 4.18 R
5671 6081 2.403252 ACAGCTTCTGTTATTCCCCG 57.597 50.000 0.00 0.0 42.59 5.73 R
5902 6312 2.556144 TCTTGAGCTTGCACACAGAT 57.444 45.000 0.00 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 87 6.196079 AGATTTTCCGAACAATCTTTAGCC 57.804 37.500 10.38 0.00 36.51 3.93
96 100 2.076863 CTTTAGCCCTGTGAACCGAAG 58.923 52.381 0.00 0.00 0.00 3.79
182 186 0.238289 CCACAAATGCGAGGTGACAC 59.762 55.000 0.00 0.00 34.52 3.67
389 393 0.451783 GTGGCCGGAAATAGCAACTG 59.548 55.000 5.05 0.00 29.81 3.16
414 425 2.005560 GCCCAGGAAACTACTACACGC 61.006 57.143 0.00 0.00 40.21 5.34
674 686 3.262135 TCTTTTCGTTTCAATGCGACC 57.738 42.857 0.00 0.00 36.82 4.79
1126 1144 3.249559 CAGTTTCTCTTGCACAAGGAGAC 59.750 47.826 10.35 10.94 38.88 3.36
1652 1670 8.506437 GTCACAGTAAATGAAGATGATTTGTCA 58.494 33.333 0.00 0.00 0.00 3.58
1757 1775 2.274437 CCGTCCTGTTCATCTCACATG 58.726 52.381 0.00 0.00 0.00 3.21
2020 2038 9.586732 TGGAAAAGGTAATATATTATGCTGCTT 57.413 29.630 8.40 0.00 0.00 3.91
2032 2050 6.704289 ATTATGCTGCTTCAAATGCTTCTA 57.296 33.333 0.00 0.00 0.00 2.10
2057 2075 3.558674 GGTTGACAGACCTGATGGG 57.441 57.895 3.76 0.00 41.89 4.00
2135 2159 6.071616 AGCAAAAGGTACAAAACAGAACTGAA 60.072 34.615 8.87 0.00 0.00 3.02
2206 2230 1.974265 TCCAAGTTCAACGCCATCAA 58.026 45.000 0.00 0.00 0.00 2.57
2213 2237 3.049912 GTTCAACGCCATCAAGAAAACC 58.950 45.455 0.00 0.00 0.00 3.27
2343 2367 4.462132 TCCAAACATATCCCACACAACATG 59.538 41.667 0.00 0.00 0.00 3.21
2410 2434 0.319405 CAGCCTTGGAAAAGCCTTGG 59.681 55.000 0.00 0.00 37.63 3.61
2457 2481 1.078143 GATGGAAGAACGCCAGCCT 60.078 57.895 0.00 0.00 39.11 4.58
2598 2622 5.581605 GCTGCATTAATTTTACTAGCTGCA 58.418 37.500 14.50 5.98 42.48 4.41
2843 2867 7.120138 GTCGTATTCCATTCCCTTCTGTTTAAA 59.880 37.037 0.00 0.00 0.00 1.52
3429 3453 2.419297 CCCTCCATACAGCACTCAGAAC 60.419 54.545 0.00 0.00 0.00 3.01
3484 3508 7.223584 TGGAAATGAACAAGTCAATCTACAGA 58.776 34.615 0.00 0.00 40.50 3.41
3573 3597 8.894409 TTGAATTGCAAGAAACATAATCGTAG 57.106 30.769 4.94 0.00 31.55 3.51
3737 3761 4.905456 ACAAGTAATATGGATCGGAGGGAA 59.095 41.667 0.00 0.00 0.00 3.97
3795 3819 7.316640 ACGGTTCATCTTATGTATATGCTCTC 58.683 38.462 0.00 0.00 0.00 3.20
3800 3824 6.956435 TCATCTTATGTATATGCTCTCTGGGT 59.044 38.462 0.00 0.00 0.00 4.51
3835 3859 4.125703 CAAGAGATCACAGCTTGGTATCC 58.874 47.826 0.00 0.00 36.31 2.59
3836 3860 2.703007 AGAGATCACAGCTTGGTATCCC 59.297 50.000 0.00 0.00 25.00 3.85
3840 3864 1.985159 TCACAGCTTGGTATCCCAACT 59.015 47.619 0.00 0.00 45.93 3.16
3841 3865 2.375174 TCACAGCTTGGTATCCCAACTT 59.625 45.455 0.00 0.00 45.93 2.66
3843 3867 2.375174 ACAGCTTGGTATCCCAACTTGA 59.625 45.455 3.82 0.00 45.93 3.02
3844 3868 3.010584 ACAGCTTGGTATCCCAACTTGAT 59.989 43.478 3.82 0.00 45.93 2.57
3845 3869 3.629398 CAGCTTGGTATCCCAACTTGATC 59.371 47.826 0.00 0.00 45.93 2.92
3846 3870 2.952310 GCTTGGTATCCCAACTTGATCC 59.048 50.000 0.00 0.00 45.93 3.36
3847 3871 3.372025 GCTTGGTATCCCAACTTGATCCT 60.372 47.826 0.00 0.00 45.93 3.24
3848 3872 4.455606 CTTGGTATCCCAACTTGATCCTC 58.544 47.826 0.00 0.00 45.93 3.71
3849 3873 3.736094 TGGTATCCCAACTTGATCCTCT 58.264 45.455 0.00 0.00 37.98 3.69
3850 3874 4.111577 TGGTATCCCAACTTGATCCTCTT 58.888 43.478 0.00 0.00 37.98 2.85
3851 3875 4.164221 TGGTATCCCAACTTGATCCTCTTC 59.836 45.833 0.00 0.00 37.98 2.87
3852 3876 3.941704 ATCCCAACTTGATCCTCTTCC 57.058 47.619 0.00 0.00 0.00 3.46
3853 3877 1.916181 TCCCAACTTGATCCTCTTCCC 59.084 52.381 0.00 0.00 0.00 3.97
3854 3878 1.064389 CCCAACTTGATCCTCTTCCCC 60.064 57.143 0.00 0.00 0.00 4.81
3855 3879 1.635487 CCAACTTGATCCTCTTCCCCA 59.365 52.381 0.00 0.00 0.00 4.96
3856 3880 2.356535 CCAACTTGATCCTCTTCCCCAG 60.357 54.545 0.00 0.00 0.00 4.45
3857 3881 1.589414 ACTTGATCCTCTTCCCCAGG 58.411 55.000 0.00 0.00 0.00 4.45
3858 3882 0.842635 CTTGATCCTCTTCCCCAGGG 59.157 60.000 0.00 0.00 0.00 4.45
3859 3883 0.421495 TTGATCCTCTTCCCCAGGGA 59.579 55.000 7.25 3.80 43.52 4.20
3860 3884 0.649992 TGATCCTCTTCCCCAGGGAT 59.350 55.000 7.25 0.00 44.74 3.85
3861 3885 1.357137 GATCCTCTTCCCCAGGGATC 58.643 60.000 7.25 0.00 44.74 3.36
3862 3886 0.104197 ATCCTCTTCCCCAGGGATCC 60.104 60.000 7.25 1.92 44.74 3.36
3863 3887 1.772156 CCTCTTCCCCAGGGATCCC 60.772 68.421 24.59 24.59 44.74 3.85
3864 3888 1.004758 CTCTTCCCCAGGGATCCCA 59.995 63.158 32.69 8.81 44.74 4.37
3865 3889 1.004758 TCTTCCCCAGGGATCCCAG 59.995 63.158 32.69 24.65 44.74 4.45
3866 3890 1.004758 CTTCCCCAGGGATCCCAGA 59.995 63.158 32.69 19.48 44.74 3.86
3867 3891 0.402566 CTTCCCCAGGGATCCCAGAT 60.403 60.000 32.69 9.66 44.74 2.90
3868 3892 0.698886 TTCCCCAGGGATCCCAGATG 60.699 60.000 32.69 21.24 44.74 2.90
3869 3893 1.073474 CCCCAGGGATCCCAGATGA 60.073 63.158 32.69 0.00 38.92 2.92
3870 3894 1.132554 CCCCAGGGATCCCAGATGAG 61.133 65.000 32.69 13.08 38.92 2.90
3871 3895 1.132554 CCCAGGGATCCCAGATGAGG 61.133 65.000 32.69 21.05 38.92 3.86
3881 3905 1.055040 CCAGATGAGGGAAGCCTAGG 58.945 60.000 3.67 3.67 0.00 3.02
3882 3906 1.413662 CCAGATGAGGGAAGCCTAGGA 60.414 57.143 14.75 0.00 0.00 2.94
3883 3907 1.969923 CAGATGAGGGAAGCCTAGGAG 59.030 57.143 14.75 0.00 0.00 3.69
3884 3908 1.862911 AGATGAGGGAAGCCTAGGAGA 59.137 52.381 14.75 0.00 0.00 3.71
3885 3909 2.158325 AGATGAGGGAAGCCTAGGAGAG 60.158 54.545 14.75 0.00 0.00 3.20
3886 3910 0.397816 TGAGGGAAGCCTAGGAGAGC 60.398 60.000 14.75 0.00 0.00 4.09
3887 3911 1.074850 AGGGAAGCCTAGGAGAGCC 60.075 63.158 14.75 7.40 0.00 4.70
3888 3912 2.503382 GGGAAGCCTAGGAGAGCCG 61.503 68.421 14.75 0.00 39.96 5.52
3889 3913 2.419620 GAAGCCTAGGAGAGCCGC 59.580 66.667 14.75 0.00 39.96 6.53
3890 3914 3.157949 AAGCCTAGGAGAGCCGCC 61.158 66.667 14.75 0.00 39.96 6.13
3893 3917 3.597728 CCTAGGAGAGCCGCCGAC 61.598 72.222 1.05 0.00 39.96 4.79
3894 3918 2.517402 CTAGGAGAGCCGCCGACT 60.517 66.667 0.00 0.00 39.96 4.18
3895 3919 2.516460 TAGGAGAGCCGCCGACTC 60.516 66.667 0.00 0.00 39.96 3.36
3898 3922 3.760035 GAGAGCCGCCGACTCCAA 61.760 66.667 0.00 0.00 34.56 3.53
3899 3923 3.991536 GAGAGCCGCCGACTCCAAC 62.992 68.421 0.00 0.00 34.56 3.77
3900 3924 4.070552 GAGCCGCCGACTCCAACT 62.071 66.667 0.00 0.00 0.00 3.16
3901 3925 2.678934 AGCCGCCGACTCCAACTA 60.679 61.111 0.00 0.00 0.00 2.24
3902 3926 2.017559 GAGCCGCCGACTCCAACTAT 62.018 60.000 0.00 0.00 0.00 2.12
3903 3927 1.591863 GCCGCCGACTCCAACTATC 60.592 63.158 0.00 0.00 0.00 2.08
3904 3928 1.067582 CCGCCGACTCCAACTATCC 59.932 63.158 0.00 0.00 0.00 2.59
3905 3929 1.672854 CCGCCGACTCCAACTATCCA 61.673 60.000 0.00 0.00 0.00 3.41
3906 3930 0.389391 CGCCGACTCCAACTATCCAT 59.611 55.000 0.00 0.00 0.00 3.41
3907 3931 1.611977 CGCCGACTCCAACTATCCATA 59.388 52.381 0.00 0.00 0.00 2.74
3908 3932 2.607282 CGCCGACTCCAACTATCCATAC 60.607 54.545 0.00 0.00 0.00 2.39
3909 3933 2.628657 GCCGACTCCAACTATCCATACT 59.371 50.000 0.00 0.00 0.00 2.12
3910 3934 3.825014 GCCGACTCCAACTATCCATACTA 59.175 47.826 0.00 0.00 0.00 1.82
3911 3935 4.082679 GCCGACTCCAACTATCCATACTAG 60.083 50.000 0.00 0.00 0.00 2.57
3912 3936 5.314529 CCGACTCCAACTATCCATACTAGA 58.685 45.833 0.00 0.00 0.00 2.43
3913 3937 5.946972 CCGACTCCAACTATCCATACTAGAT 59.053 44.000 0.00 0.00 0.00 1.98
3914 3938 6.094325 CCGACTCCAACTATCCATACTAGATC 59.906 46.154 0.00 0.00 0.00 2.75
3915 3939 6.882140 CGACTCCAACTATCCATACTAGATCT 59.118 42.308 0.00 0.00 0.00 2.75
3916 3940 7.148323 CGACTCCAACTATCCATACTAGATCTG 60.148 44.444 5.18 0.00 0.00 2.90
3917 3941 7.760607 ACTCCAACTATCCATACTAGATCTGA 58.239 38.462 5.18 0.00 0.00 3.27
3918 3942 7.668052 ACTCCAACTATCCATACTAGATCTGAC 59.332 40.741 5.18 0.00 0.00 3.51
3919 3943 6.948886 TCCAACTATCCATACTAGATCTGACC 59.051 42.308 5.18 0.00 0.00 4.02
3920 3944 6.721668 CCAACTATCCATACTAGATCTGACCA 59.278 42.308 5.18 0.00 0.00 4.02
3921 3945 7.233553 CCAACTATCCATACTAGATCTGACCAA 59.766 40.741 5.18 0.00 0.00 3.67
3922 3946 7.768807 ACTATCCATACTAGATCTGACCAAC 57.231 40.000 5.18 0.00 0.00 3.77
3923 3947 7.531317 ACTATCCATACTAGATCTGACCAACT 58.469 38.462 5.18 0.00 0.00 3.16
3924 3948 6.662865 ATCCATACTAGATCTGACCAACTG 57.337 41.667 5.18 0.00 0.00 3.16
3925 3949 4.342378 TCCATACTAGATCTGACCAACTGC 59.658 45.833 5.18 0.00 0.00 4.40
3926 3950 4.502259 CCATACTAGATCTGACCAACTGCC 60.502 50.000 5.18 0.00 0.00 4.85
3927 3951 1.834263 ACTAGATCTGACCAACTGCCC 59.166 52.381 5.18 0.00 0.00 5.36
3928 3952 1.833630 CTAGATCTGACCAACTGCCCA 59.166 52.381 5.18 0.00 0.00 5.36
3929 3953 1.293062 AGATCTGACCAACTGCCCAT 58.707 50.000 0.00 0.00 0.00 4.00
3930 3954 1.211457 AGATCTGACCAACTGCCCATC 59.789 52.381 0.00 0.00 0.00 3.51
3931 3955 0.257039 ATCTGACCAACTGCCCATCC 59.743 55.000 0.00 0.00 0.00 3.51
3932 3956 0.842030 TCTGACCAACTGCCCATCCT 60.842 55.000 0.00 0.00 0.00 3.24
3933 3957 0.911769 CTGACCAACTGCCCATCCTA 59.088 55.000 0.00 0.00 0.00 2.94
3961 3985 0.476338 TTTGGTCTTAGCCACTGCCA 59.524 50.000 0.00 0.00 38.42 4.92
3991 4015 1.053835 TGAACTGTGTGGCCTCCTGA 61.054 55.000 3.32 0.00 0.00 3.86
4055 4079 5.113383 CCGTAGCATTACCTGTCATTGTTA 58.887 41.667 0.00 0.00 0.00 2.41
4118 4142 2.205152 CCACCAGCTTGCTTTGGCT 61.205 57.895 6.99 0.00 38.03 4.75
4235 4259 5.645067 TCTTGAAGGACATTTAGTCATGCAG 59.355 40.000 0.00 0.00 46.53 4.41
4246 4270 9.013229 ACATTTAGTCATGCAGTCTCATTTAAA 57.987 29.630 0.00 0.00 0.00 1.52
4251 4275 8.565896 AGTCATGCAGTCTCATTTAAATTACA 57.434 30.769 0.00 0.00 0.00 2.41
4252 4276 9.013229 AGTCATGCAGTCTCATTTAAATTACAA 57.987 29.630 0.00 0.00 0.00 2.41
4253 4277 9.065871 GTCATGCAGTCTCATTTAAATTACAAC 57.934 33.333 0.00 0.00 0.00 3.32
4254 4278 9.013229 TCATGCAGTCTCATTTAAATTACAACT 57.987 29.630 0.00 0.00 0.00 3.16
4255 4279 9.630098 CATGCAGTCTCATTTAAATTACAACTT 57.370 29.630 0.00 0.00 0.00 2.66
4256 4280 9.846248 ATGCAGTCTCATTTAAATTACAACTTC 57.154 29.630 0.00 0.00 0.00 3.01
4417 4452 8.303876 ACATAGTAAACAATGAATCCAACAACC 58.696 33.333 0.00 0.00 0.00 3.77
4420 4455 4.503741 AACAATGAATCCAACAACCGAG 57.496 40.909 0.00 0.00 0.00 4.63
4441 4476 6.348132 CCGAGCAACATACTTGTAAAATGACA 60.348 38.462 0.00 0.00 34.06 3.58
4711 4751 3.149196 CCTTGTGTTACCTTGCATGACT 58.851 45.455 0.00 0.00 0.00 3.41
4713 4753 3.483808 TGTGTTACCTTGCATGACTGA 57.516 42.857 0.00 0.00 0.00 3.41
4776 4816 9.068008 CAACGTGTAACACTGAACTTAAATTTT 57.932 29.630 0.00 0.00 35.74 1.82
5024 5425 8.749499 CAACTTTTCATTAAACAGAGAAGCAAG 58.251 33.333 0.00 0.00 31.30 4.01
5178 5588 5.643379 TCAGCCTCCAATTTTATGTTGTC 57.357 39.130 0.00 0.00 0.00 3.18
5350 5760 2.831685 TGCTCAATCGGTGTTACAGT 57.168 45.000 0.00 0.00 0.00 3.55
5383 5793 9.507329 CCTAATATGGCTCATAACTGTGTTAAT 57.493 33.333 0.00 0.00 29.74 1.40
5468 5878 8.747538 ATAAAAAGGTACAGACTCAACTTGTT 57.252 30.769 0.00 0.00 0.00 2.83
5671 6081 4.116238 GACAGAAGTATGCAGAGTAAGGC 58.884 47.826 0.00 0.00 0.00 4.35
5902 6312 6.210784 TGAGTAAAGCTCTGCTCCTTTAACTA 59.789 38.462 2.45 0.00 44.41 2.24
5956 6366 8.730680 AGCACAAAATAGGTGACTTACAATTAG 58.269 33.333 0.00 0.00 43.67 1.73
6087 6497 4.381292 GCCAAATCAAGCAAGAGCAGTTAT 60.381 41.667 0.00 0.00 45.49 1.89
6088 6498 5.717119 CCAAATCAAGCAAGAGCAGTTATT 58.283 37.500 0.00 0.00 45.49 1.40
6089 6499 6.625740 GCCAAATCAAGCAAGAGCAGTTATTA 60.626 38.462 0.00 0.00 45.49 0.98
6156 6566 5.880901 ACAGGATGAAATACAGGAAGTTGT 58.119 37.500 0.00 0.00 39.69 3.32
6198 6609 2.121291 TTTCTGTGGTTGCAGACACA 57.879 45.000 20.02 20.02 44.23 3.72
6199 6610 1.378531 TTCTGTGGTTGCAGACACAC 58.621 50.000 18.12 11.79 44.23 3.82
6200 6611 0.541392 TCTGTGGTTGCAGACACACT 59.459 50.000 18.12 0.00 42.20 3.55
6201 6612 1.760029 TCTGTGGTTGCAGACACACTA 59.240 47.619 18.12 9.27 42.20 2.74
6202 6613 2.169561 TCTGTGGTTGCAGACACACTAA 59.830 45.455 18.12 7.32 42.20 2.24
6203 6614 2.942376 CTGTGGTTGCAGACACACTAAA 59.058 45.455 18.12 1.81 42.20 1.85
6204 6615 3.348119 TGTGGTTGCAGACACACTAAAA 58.652 40.909 18.12 0.00 42.20 1.52
6205 6616 3.127895 TGTGGTTGCAGACACACTAAAAC 59.872 43.478 18.12 0.00 42.20 2.43
6206 6617 3.377172 GTGGTTGCAGACACACTAAAACT 59.623 43.478 15.43 0.00 37.54 2.66
6207 6618 3.625764 TGGTTGCAGACACACTAAAACTC 59.374 43.478 0.00 0.00 0.00 3.01
6208 6619 3.003378 GGTTGCAGACACACTAAAACTCC 59.997 47.826 0.00 0.00 0.00 3.85
6209 6620 2.479837 TGCAGACACACTAAAACTCCG 58.520 47.619 0.00 0.00 0.00 4.63
6210 6621 1.194772 GCAGACACACTAAAACTCCGC 59.805 52.381 0.00 0.00 0.00 5.54
6211 6622 1.798813 CAGACACACTAAAACTCCGCC 59.201 52.381 0.00 0.00 0.00 6.13
6212 6623 1.692519 AGACACACTAAAACTCCGCCT 59.307 47.619 0.00 0.00 0.00 5.52
6213 6624 2.895404 AGACACACTAAAACTCCGCCTA 59.105 45.455 0.00 0.00 0.00 3.93
6214 6625 3.514309 AGACACACTAAAACTCCGCCTAT 59.486 43.478 0.00 0.00 0.00 2.57
6215 6626 3.596214 ACACACTAAAACTCCGCCTATG 58.404 45.455 0.00 0.00 0.00 2.23
6216 6627 3.007614 ACACACTAAAACTCCGCCTATGT 59.992 43.478 0.00 0.00 0.00 2.29
6217 6628 4.000988 CACACTAAAACTCCGCCTATGTT 58.999 43.478 0.00 0.00 0.00 2.71
6218 6629 4.000988 ACACTAAAACTCCGCCTATGTTG 58.999 43.478 0.00 0.00 0.00 3.33
6219 6630 4.000988 CACTAAAACTCCGCCTATGTTGT 58.999 43.478 0.00 0.00 0.00 3.32
6220 6631 4.092968 CACTAAAACTCCGCCTATGTTGTC 59.907 45.833 0.00 0.00 0.00 3.18
6221 6632 3.418684 AAAACTCCGCCTATGTTGTCT 57.581 42.857 0.00 0.00 0.00 3.41
6222 6633 2.674796 AACTCCGCCTATGTTGTCTC 57.325 50.000 0.00 0.00 0.00 3.36
6223 6634 1.557099 ACTCCGCCTATGTTGTCTCA 58.443 50.000 0.00 0.00 0.00 3.27
6224 6635 1.899814 ACTCCGCCTATGTTGTCTCAA 59.100 47.619 0.00 0.00 0.00 3.02
6225 6636 2.271800 CTCCGCCTATGTTGTCTCAAC 58.728 52.381 5.78 5.78 0.00 3.18
6226 6637 1.621317 TCCGCCTATGTTGTCTCAACA 59.379 47.619 15.83 15.83 34.31 3.33
6227 6638 2.236146 TCCGCCTATGTTGTCTCAACAT 59.764 45.455 24.50 24.50 42.82 2.71
6228 6639 3.449377 TCCGCCTATGTTGTCTCAACATA 59.551 43.478 24.21 24.21 40.87 2.29
6233 6644 2.093306 TGTTGTCTCAACATAGCCGG 57.907 50.000 10.63 0.00 34.73 6.13
6234 6645 1.346395 TGTTGTCTCAACATAGCCGGT 59.654 47.619 1.90 0.00 34.73 5.28
6235 6646 2.000447 GTTGTCTCAACATAGCCGGTC 59.000 52.381 1.90 0.00 34.73 4.79
6236 6647 0.535335 TGTCTCAACATAGCCGGTCC 59.465 55.000 1.90 0.00 0.00 4.46
6237 6648 0.179081 GTCTCAACATAGCCGGTCCC 60.179 60.000 1.90 0.00 0.00 4.46
6238 6649 0.616395 TCTCAACATAGCCGGTCCCA 60.616 55.000 1.90 0.00 0.00 4.37
6239 6650 0.251916 CTCAACATAGCCGGTCCCAA 59.748 55.000 1.90 0.00 0.00 4.12
6240 6651 0.251916 TCAACATAGCCGGTCCCAAG 59.748 55.000 1.90 0.00 0.00 3.61
6241 6652 1.077716 AACATAGCCGGTCCCAAGC 60.078 57.895 1.90 0.00 0.00 4.01
6242 6653 2.203209 CATAGCCGGTCCCAAGCC 60.203 66.667 1.90 0.00 0.00 4.35
6243 6654 3.489513 ATAGCCGGTCCCAAGCCC 61.490 66.667 1.90 0.00 0.00 5.19
6252 6663 2.044352 CCCAAGCCCGGGTAAAGG 60.044 66.667 24.63 18.41 41.83 3.11
6253 6664 2.608550 CCCAAGCCCGGGTAAAGGA 61.609 63.158 24.63 0.00 41.83 3.36
6254 6665 1.077716 CCAAGCCCGGGTAAAGGAG 60.078 63.158 24.63 5.31 0.00 3.69
6255 6666 1.077716 CAAGCCCGGGTAAAGGAGG 60.078 63.158 24.63 0.00 0.00 4.30
6256 6667 1.229723 AAGCCCGGGTAAAGGAGGA 60.230 57.895 24.63 0.00 0.00 3.71
6257 6668 1.272554 AAGCCCGGGTAAAGGAGGAG 61.273 60.000 24.63 0.00 0.00 3.69
6258 6669 2.743179 GCCCGGGTAAAGGAGGAGG 61.743 68.421 24.63 0.00 0.00 4.30
6259 6670 2.070650 CCCGGGTAAAGGAGGAGGG 61.071 68.421 14.18 0.00 0.00 4.30
6260 6671 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
6261 6672 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
6262 6673 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
6263 6674 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
6264 6675 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
6265 6676 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
6266 6677 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
6267 6678 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
6268 6679 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
6269 6680 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
6270 6681 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
6271 6682 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
6272 6683 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
6273 6684 1.561542 AGGAGGGTTGTGATAGGCTTG 59.438 52.381 0.00 0.00 0.00 4.01
6274 6685 1.408822 GGAGGGTTGTGATAGGCTTGG 60.409 57.143 0.00 0.00 0.00 3.61
6275 6686 0.034089 AGGGTTGTGATAGGCTTGGC 60.034 55.000 0.00 0.00 0.00 4.52
6276 6687 1.376609 GGGTTGTGATAGGCTTGGCG 61.377 60.000 0.00 0.00 0.00 5.69
6277 6688 0.392461 GGTTGTGATAGGCTTGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
6278 6689 1.009829 GTTGTGATAGGCTTGGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
6289 6700 4.458666 TGGCGAGCCAACGTAAAA 57.541 50.000 15.24 0.00 44.12 1.52
6290 6701 2.704108 TGGCGAGCCAACGTAAAAA 58.296 47.368 15.24 0.00 44.12 1.94
6291 6702 0.308376 TGGCGAGCCAACGTAAAAAC 59.692 50.000 15.24 0.00 44.12 2.43
6292 6703 0.589708 GGCGAGCCAACGTAAAAACT 59.410 50.000 9.58 0.00 35.81 2.66
6293 6704 1.399343 GGCGAGCCAACGTAAAAACTC 60.399 52.381 9.58 0.00 35.81 3.01
6294 6705 1.262151 GCGAGCCAACGTAAAAACTCA 59.738 47.619 0.00 0.00 35.59 3.41
6295 6706 2.661979 GCGAGCCAACGTAAAAACTCAG 60.662 50.000 0.00 0.00 35.59 3.35
6296 6707 2.661979 CGAGCCAACGTAAAAACTCAGC 60.662 50.000 0.00 0.00 0.00 4.26
6297 6708 1.607148 AGCCAACGTAAAAACTCAGCC 59.393 47.619 0.00 0.00 0.00 4.85
6298 6709 1.335496 GCCAACGTAAAAACTCAGCCA 59.665 47.619 0.00 0.00 0.00 4.75
6299 6710 2.857104 GCCAACGTAAAAACTCAGCCAC 60.857 50.000 0.00 0.00 0.00 5.01
6300 6711 2.616842 CCAACGTAAAAACTCAGCCACT 59.383 45.455 0.00 0.00 0.00 4.00
6301 6712 3.303791 CCAACGTAAAAACTCAGCCACTC 60.304 47.826 0.00 0.00 0.00 3.51
6302 6713 3.470645 ACGTAAAAACTCAGCCACTCT 57.529 42.857 0.00 0.00 0.00 3.24
6303 6714 3.805207 ACGTAAAAACTCAGCCACTCTT 58.195 40.909 0.00 0.00 0.00 2.85
6304 6715 4.952460 ACGTAAAAACTCAGCCACTCTTA 58.048 39.130 0.00 0.00 0.00 2.10
6305 6716 5.548406 ACGTAAAAACTCAGCCACTCTTAT 58.452 37.500 0.00 0.00 0.00 1.73
6306 6717 5.408604 ACGTAAAAACTCAGCCACTCTTATG 59.591 40.000 0.00 0.00 0.00 1.90
6307 6718 5.163854 CGTAAAAACTCAGCCACTCTTATGG 60.164 44.000 0.00 0.00 43.26 2.74
6308 6719 4.640771 AAAACTCAGCCACTCTTATGGA 57.359 40.909 0.00 0.00 43.02 3.41
6309 6720 3.902881 AACTCAGCCACTCTTATGGAG 57.097 47.619 0.00 0.00 43.02 3.86
6310 6721 3.107402 ACTCAGCCACTCTTATGGAGA 57.893 47.619 0.00 0.00 44.45 3.71
6311 6722 3.652055 ACTCAGCCACTCTTATGGAGAT 58.348 45.455 0.00 0.00 44.45 2.75
6312 6723 3.387374 ACTCAGCCACTCTTATGGAGATG 59.613 47.826 0.00 0.00 44.45 2.90
6313 6724 3.640498 CTCAGCCACTCTTATGGAGATGA 59.360 47.826 0.00 0.00 44.45 2.92
6314 6725 4.033009 TCAGCCACTCTTATGGAGATGAA 58.967 43.478 0.00 0.00 44.45 2.57
6315 6726 4.471025 TCAGCCACTCTTATGGAGATGAAA 59.529 41.667 0.00 0.00 44.45 2.69
6316 6727 4.574013 CAGCCACTCTTATGGAGATGAAAC 59.426 45.833 0.00 0.00 44.45 2.78
6317 6728 3.879892 GCCACTCTTATGGAGATGAAACC 59.120 47.826 0.00 0.00 44.45 3.27
6318 6729 4.455606 CCACTCTTATGGAGATGAAACCC 58.544 47.826 4.83 0.00 44.45 4.11
6319 6730 4.080356 CCACTCTTATGGAGATGAAACCCA 60.080 45.833 4.83 0.00 44.45 4.51
6320 6731 5.500234 CACTCTTATGGAGATGAAACCCAA 58.500 41.667 4.83 0.00 44.45 4.12
6321 6732 5.945784 CACTCTTATGGAGATGAAACCCAAA 59.054 40.000 4.83 0.00 44.45 3.28
6322 6733 6.434028 CACTCTTATGGAGATGAAACCCAAAA 59.566 38.462 4.83 0.00 44.45 2.44
6323 6734 6.660949 ACTCTTATGGAGATGAAACCCAAAAG 59.339 38.462 4.83 0.00 44.45 2.27
6324 6735 6.789268 TCTTATGGAGATGAAACCCAAAAGA 58.211 36.000 0.00 0.00 33.15 2.52
6325 6736 7.413446 TCTTATGGAGATGAAACCCAAAAGAT 58.587 34.615 0.00 0.00 33.15 2.40
6326 6737 7.895429 TCTTATGGAGATGAAACCCAAAAGATT 59.105 33.333 0.00 0.00 33.15 2.40
6327 6738 6.940430 ATGGAGATGAAACCCAAAAGATTT 57.060 33.333 0.00 0.00 33.15 2.17
6328 6739 6.745794 TGGAGATGAAACCCAAAAGATTTT 57.254 33.333 0.00 0.00 0.00 1.82
6329 6740 6.758254 TGGAGATGAAACCCAAAAGATTTTC 58.242 36.000 0.00 0.00 0.00 2.29
6330 6741 5.863935 GGAGATGAAACCCAAAAGATTTTCG 59.136 40.000 0.00 0.00 31.76 3.46
6331 6742 6.405278 AGATGAAACCCAAAAGATTTTCGT 57.595 33.333 0.00 0.00 31.76 3.85
6332 6743 6.816136 AGATGAAACCCAAAAGATTTTCGTT 58.184 32.000 0.00 0.00 31.76 3.85
6333 6744 6.701400 AGATGAAACCCAAAAGATTTTCGTTG 59.299 34.615 0.00 0.00 31.76 4.10
6334 6745 5.112686 TGAAACCCAAAAGATTTTCGTTGG 58.887 37.500 0.00 0.00 36.67 3.77
6336 6747 3.038788 CCCAAAAGATTTTCGTTGGGG 57.961 47.619 17.61 11.08 45.27 4.96
6337 6748 2.412870 CCAAAAGATTTTCGTTGGGGC 58.587 47.619 0.00 0.00 34.69 5.80
6338 6749 2.058057 CAAAAGATTTTCGTTGGGGCG 58.942 47.619 0.00 0.00 0.00 6.13
6339 6750 1.324383 AAAGATTTTCGTTGGGGCGT 58.676 45.000 0.00 0.00 0.00 5.68
6340 6751 0.596082 AAGATTTTCGTTGGGGCGTG 59.404 50.000 0.00 0.00 0.00 5.34
6341 6752 0.536460 AGATTTTCGTTGGGGCGTGT 60.536 50.000 0.00 0.00 0.00 4.49
6342 6753 0.312729 GATTTTCGTTGGGGCGTGTT 59.687 50.000 0.00 0.00 0.00 3.32
6343 6754 0.031449 ATTTTCGTTGGGGCGTGTTG 59.969 50.000 0.00 0.00 0.00 3.33
6344 6755 2.005960 TTTTCGTTGGGGCGTGTTGG 62.006 55.000 0.00 0.00 0.00 3.77
6345 6756 3.700831 TTCGTTGGGGCGTGTTGGT 62.701 57.895 0.00 0.00 0.00 3.67
6346 6757 3.213402 CGTTGGGGCGTGTTGGTT 61.213 61.111 0.00 0.00 0.00 3.67
6347 6758 2.415426 GTTGGGGCGTGTTGGTTG 59.585 61.111 0.00 0.00 0.00 3.77
6348 6759 3.532155 TTGGGGCGTGTTGGTTGC 61.532 61.111 0.00 0.00 0.00 4.17
6351 6762 4.025401 GGGCGTGTTGGTTGCGAG 62.025 66.667 0.00 0.00 0.00 5.03
6352 6763 2.970324 GGCGTGTTGGTTGCGAGA 60.970 61.111 0.00 0.00 0.00 4.04
6353 6764 2.325082 GGCGTGTTGGTTGCGAGAT 61.325 57.895 0.00 0.00 0.00 2.75
6354 6765 1.132640 GCGTGTTGGTTGCGAGATC 59.867 57.895 0.00 0.00 0.00 2.75
6355 6766 1.291877 GCGTGTTGGTTGCGAGATCT 61.292 55.000 0.00 0.00 0.00 2.75
6356 6767 1.148310 CGTGTTGGTTGCGAGATCTT 58.852 50.000 0.00 0.00 0.00 2.40
6357 6768 2.333926 CGTGTTGGTTGCGAGATCTTA 58.666 47.619 0.00 0.00 0.00 2.10
6358 6769 2.930040 CGTGTTGGTTGCGAGATCTTAT 59.070 45.455 0.00 0.00 0.00 1.73
6359 6770 3.242091 CGTGTTGGTTGCGAGATCTTATG 60.242 47.826 0.00 0.00 0.00 1.90
6360 6771 3.063997 GTGTTGGTTGCGAGATCTTATGG 59.936 47.826 0.00 0.00 0.00 2.74
6361 6772 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
6362 6773 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
6363 6774 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
6364 6775 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
6365 6776 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
6366 6777 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
6367 6778 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
6368 6779 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
6369 6780 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
6370 6781 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
6371 6782 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
6372 6783 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
6373 6784 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
6374 6785 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
6375 6786 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
6376 6787 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
6377 6788 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
6378 6789 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
6379 6790 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
6380 6791 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
6381 6792 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
6382 6793 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
6383 6794 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
6384 6795 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
6385 6796 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
6386 6797 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
6387 6798 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
6388 6799 0.909623 TCTAGCCTACCCCAACTTGC 59.090 55.000 0.00 0.00 0.00 4.01
6389 6800 0.912486 CTAGCCTACCCCAACTTGCT 59.088 55.000 0.00 0.00 0.00 3.91
6390 6801 1.282157 CTAGCCTACCCCAACTTGCTT 59.718 52.381 0.00 0.00 0.00 3.91
6391 6802 0.251341 AGCCTACCCCAACTTGCTTG 60.251 55.000 0.00 0.00 0.00 4.01
6400 6811 3.923017 CCAACTTGCTTGGGACTAAAG 57.077 47.619 0.00 0.00 45.46 1.85
6401 6812 2.558359 CCAACTTGCTTGGGACTAAAGG 59.442 50.000 0.00 0.00 45.46 3.11
6402 6813 1.911057 ACTTGCTTGGGACTAAAGGC 58.089 50.000 0.00 0.00 0.00 4.35
6403 6814 1.425448 ACTTGCTTGGGACTAAAGGCT 59.575 47.619 0.00 0.00 0.00 4.58
6404 6815 2.158460 ACTTGCTTGGGACTAAAGGCTT 60.158 45.455 0.00 0.00 0.00 4.35
6405 6816 2.675658 TGCTTGGGACTAAAGGCTTT 57.324 45.000 17.76 17.76 0.00 3.51
6406 6817 2.238521 TGCTTGGGACTAAAGGCTTTG 58.761 47.619 22.32 13.97 0.00 2.77
6407 6818 2.239400 GCTTGGGACTAAAGGCTTTGT 58.761 47.619 22.32 16.86 0.00 2.83
6408 6819 2.628178 GCTTGGGACTAAAGGCTTTGTT 59.372 45.455 22.32 8.73 0.00 2.83
6409 6820 3.552890 GCTTGGGACTAAAGGCTTTGTTG 60.553 47.826 22.32 13.85 0.00 3.33
6410 6821 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
6411 6822 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
6412 6823 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
6413 6824 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
6414 6825 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
6415 6826 5.416083 GGACTAAAGGCTTTGTTGTTGTTT 58.584 37.500 22.32 0.00 0.00 2.83
6416 6827 5.290885 GGACTAAAGGCTTTGTTGTTGTTTG 59.709 40.000 22.32 0.00 0.00 2.93
6417 6828 5.789521 ACTAAAGGCTTTGTTGTTGTTTGT 58.210 33.333 22.32 0.00 0.00 2.83
6418 6829 6.227522 ACTAAAGGCTTTGTTGTTGTTTGTT 58.772 32.000 22.32 0.00 0.00 2.83
6419 6830 5.355467 AAAGGCTTTGTTGTTGTTTGTTG 57.645 34.783 12.53 0.00 0.00 3.33
6420 6831 2.741517 AGGCTTTGTTGTTGTTTGTTGC 59.258 40.909 0.00 0.00 0.00 4.17
6421 6832 2.481952 GGCTTTGTTGTTGTTTGTTGCA 59.518 40.909 0.00 0.00 0.00 4.08
6422 6833 3.424697 GGCTTTGTTGTTGTTTGTTGCAG 60.425 43.478 0.00 0.00 0.00 4.41
6423 6834 3.431572 GCTTTGTTGTTGTTTGTTGCAGA 59.568 39.130 0.00 0.00 0.00 4.26
6424 6835 4.666402 GCTTTGTTGTTGTTTGTTGCAGAC 60.666 41.667 0.00 0.00 0.00 3.51
6425 6836 3.650070 TGTTGTTGTTTGTTGCAGACA 57.350 38.095 0.00 0.00 36.19 3.41
6426 6837 3.312828 TGTTGTTGTTTGTTGCAGACAC 58.687 40.909 1.85 0.00 38.18 3.67
6548 6959 2.380064 TGTATTCATCATTGGGGGCC 57.620 50.000 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 87 0.320374 TACCAGCTTCGGTTCACAGG 59.680 55.000 0.33 0.00 40.67 4.00
96 100 0.108329 TAGCTTTGTCGGCTACCAGC 60.108 55.000 0.00 3.11 40.74 4.85
189 193 2.385315 GTGCCTTTGTTTCTTTCTCGC 58.615 47.619 0.00 0.00 0.00 5.03
389 393 0.034089 AGTAGTTTCCTGGGCATGGC 60.034 55.000 11.56 11.56 0.00 4.40
414 425 5.637810 TCGAGTAACTTGATTTGCAGGTAAG 59.362 40.000 0.00 0.00 35.52 2.34
995 1013 3.723235 CTGAGTGACCCCATCGCCG 62.723 68.421 0.00 0.00 38.75 6.46
1148 1166 1.855295 TCTGGCACCGTATGGAGTTA 58.145 50.000 8.33 0.00 39.21 2.24
1652 1670 3.471680 GTGCTCCTCAAGTTTCTTGAGT 58.528 45.455 26.83 0.00 43.19 3.41
1757 1775 8.882736 CCTGAAAGAAAATAAAATATGGTTGGC 58.117 33.333 0.00 0.00 34.07 4.52
2017 2035 7.269477 ACCTCATTATAGAAGCATTTGAAGC 57.731 36.000 0.00 0.00 0.00 3.86
2020 2038 7.828717 TGTCAACCTCATTATAGAAGCATTTGA 59.171 33.333 0.00 0.00 0.00 2.69
2077 2095 2.034179 GGTTCCTGGTGCTGTTTGTTAC 59.966 50.000 0.00 0.00 0.00 2.50
2135 2159 1.308998 CGAGGTGTTTTGGCACTTCT 58.691 50.000 6.73 0.00 41.46 2.85
2206 2230 2.568623 ATGTCTTGAGCCGGTTTTCT 57.431 45.000 1.90 0.00 0.00 2.52
2213 2237 7.308782 AGTTTCTTATAAATGTCTTGAGCCG 57.691 36.000 0.00 0.00 0.00 5.52
2296 2320 7.201617 GGAACTAGGAAAATCACTAACATTCGG 60.202 40.741 0.00 0.00 0.00 4.30
2343 2367 5.488341 TCAGTAGGTAGTTCTGCAAATTCC 58.512 41.667 0.00 0.00 0.00 3.01
2598 2622 4.510167 AAATACATAGCTGCTGAAGGGT 57.490 40.909 13.43 5.66 0.00 4.34
2843 2867 9.289782 GATGCAATGGAAAGTATACTTATTCCT 57.710 33.333 26.10 15.10 35.12 3.36
3069 3093 2.237392 GGAGTGAAGTTATCAGGCAGGT 59.763 50.000 0.00 0.00 39.19 4.00
3235 3259 8.762481 ACTTTCCTTCCATTGTTTTACTTAGT 57.238 30.769 0.00 0.00 0.00 2.24
3287 3311 2.079925 CTCTACCAAGCCTGCAACTTC 58.920 52.381 0.00 0.00 0.00 3.01
3406 3430 0.618680 TGAGTGCTGTATGGAGGGCT 60.619 55.000 0.00 0.00 0.00 5.19
3429 3453 8.594881 TCTTTTTCTTCTGCTAGAACACTAAG 57.405 34.615 0.00 0.00 34.04 2.18
3484 3508 5.367945 TTCCAGTAAGAACAGTTTGGACT 57.632 39.130 3.48 0.00 34.66 3.85
3573 3597 6.042208 AGCAATTTATAGAGTACTGGACCCTC 59.958 42.308 0.00 0.00 0.00 4.30
3795 3819 5.069648 TCTCTTGTATATTGAGAGCACCCAG 59.930 44.000 0.00 0.00 37.44 4.45
3800 3824 7.352079 TGTGATCTCTTGTATATTGAGAGCA 57.648 36.000 12.99 12.99 46.51 4.26
3835 3859 1.635487 TGGGGAAGAGGATCAAGTTGG 59.365 52.381 2.34 0.00 37.82 3.77
3836 3860 2.356535 CCTGGGGAAGAGGATCAAGTTG 60.357 54.545 0.00 0.00 37.82 3.16
3838 3862 1.589414 CCTGGGGAAGAGGATCAAGT 58.411 55.000 0.00 0.00 37.82 3.16
3840 3864 0.421495 TCCCTGGGGAAGAGGATCAA 59.579 55.000 14.00 0.00 42.05 2.57
3841 3865 2.114388 TCCCTGGGGAAGAGGATCA 58.886 57.895 14.00 0.00 42.05 2.92
3851 3875 1.073474 TCATCTGGGATCCCTGGGG 60.073 63.158 31.20 23.89 35.98 4.96
3852 3876 1.132554 CCTCATCTGGGATCCCTGGG 61.133 65.000 31.20 21.62 35.98 4.45
3853 3877 2.461163 CCTCATCTGGGATCCCTGG 58.539 63.158 31.20 23.17 35.98 4.45
3862 3886 1.055040 CCTAGGCTTCCCTCATCTGG 58.945 60.000 0.00 0.00 41.75 3.86
3863 3887 1.969923 CTCCTAGGCTTCCCTCATCTG 59.030 57.143 2.96 0.00 41.75 2.90
3864 3888 1.862911 TCTCCTAGGCTTCCCTCATCT 59.137 52.381 2.96 0.00 41.75 2.90
3865 3889 2.247358 CTCTCCTAGGCTTCCCTCATC 58.753 57.143 2.96 0.00 41.75 2.92
3866 3890 1.761009 GCTCTCCTAGGCTTCCCTCAT 60.761 57.143 2.96 0.00 41.75 2.90
3867 3891 0.397816 GCTCTCCTAGGCTTCCCTCA 60.398 60.000 2.96 0.00 41.75 3.86
3868 3892 2.436521 GCTCTCCTAGGCTTCCCTC 58.563 63.158 2.96 0.00 41.75 4.30
3869 3893 4.718143 GCTCTCCTAGGCTTCCCT 57.282 61.111 2.96 0.00 45.61 4.20
3876 3900 3.597728 GTCGGCGGCTCTCCTAGG 61.598 72.222 3.23 0.82 0.00 3.02
3877 3901 2.517402 AGTCGGCGGCTCTCCTAG 60.517 66.667 8.88 0.00 0.00 3.02
3878 3902 2.516460 GAGTCGGCGGCTCTCCTA 60.516 66.667 32.30 0.00 0.00 2.94
3881 3905 3.760035 TTGGAGTCGGCGGCTCTC 61.760 66.667 36.44 26.98 33.73 3.20
3882 3906 4.070552 GTTGGAGTCGGCGGCTCT 62.071 66.667 36.44 18.88 33.73 4.09
3883 3907 2.017559 ATAGTTGGAGTCGGCGGCTC 62.018 60.000 31.91 31.91 0.00 4.70
3884 3908 2.017559 GATAGTTGGAGTCGGCGGCT 62.018 60.000 16.62 16.62 0.00 5.52
3885 3909 1.591863 GATAGTTGGAGTCGGCGGC 60.592 63.158 1.71 1.71 0.00 6.53
3886 3910 1.067582 GGATAGTTGGAGTCGGCGG 59.932 63.158 7.21 0.00 0.00 6.13
3887 3911 0.389391 ATGGATAGTTGGAGTCGGCG 59.611 55.000 0.00 0.00 0.00 6.46
3888 3912 2.628657 AGTATGGATAGTTGGAGTCGGC 59.371 50.000 0.00 0.00 0.00 5.54
3889 3913 5.314529 TCTAGTATGGATAGTTGGAGTCGG 58.685 45.833 0.00 0.00 0.00 4.79
3890 3914 6.882140 AGATCTAGTATGGATAGTTGGAGTCG 59.118 42.308 0.00 0.00 35.97 4.18
3891 3915 7.885922 TCAGATCTAGTATGGATAGTTGGAGTC 59.114 40.741 0.00 0.00 35.97 3.36
3892 3916 7.668052 GTCAGATCTAGTATGGATAGTTGGAGT 59.332 40.741 0.00 0.00 35.97 3.85
3893 3917 7.122055 GGTCAGATCTAGTATGGATAGTTGGAG 59.878 44.444 0.00 0.00 35.97 3.86
3894 3918 6.948886 GGTCAGATCTAGTATGGATAGTTGGA 59.051 42.308 0.00 0.00 35.97 3.53
3895 3919 6.721668 TGGTCAGATCTAGTATGGATAGTTGG 59.278 42.308 0.00 0.00 35.97 3.77
3896 3920 7.767250 TGGTCAGATCTAGTATGGATAGTTG 57.233 40.000 0.00 0.00 35.97 3.16
3897 3921 8.007742 AGTTGGTCAGATCTAGTATGGATAGTT 58.992 37.037 0.00 0.00 35.97 2.24
3898 3922 7.450014 CAGTTGGTCAGATCTAGTATGGATAGT 59.550 40.741 0.00 0.00 35.97 2.12
3899 3923 7.576666 GCAGTTGGTCAGATCTAGTATGGATAG 60.577 44.444 0.00 0.00 35.97 2.08
3900 3924 6.209589 GCAGTTGGTCAGATCTAGTATGGATA 59.790 42.308 0.00 0.00 35.97 2.59
3901 3925 5.011533 GCAGTTGGTCAGATCTAGTATGGAT 59.988 44.000 0.00 0.00 39.88 3.41
3902 3926 4.342378 GCAGTTGGTCAGATCTAGTATGGA 59.658 45.833 0.00 0.00 0.00 3.41
3903 3927 4.502259 GGCAGTTGGTCAGATCTAGTATGG 60.502 50.000 0.00 0.00 0.00 2.74
3904 3928 4.502259 GGGCAGTTGGTCAGATCTAGTATG 60.502 50.000 0.00 0.00 0.00 2.39
3905 3929 3.643792 GGGCAGTTGGTCAGATCTAGTAT 59.356 47.826 0.00 0.00 0.00 2.12
3906 3930 3.031736 GGGCAGTTGGTCAGATCTAGTA 58.968 50.000 0.00 0.00 0.00 1.82
3907 3931 1.834263 GGGCAGTTGGTCAGATCTAGT 59.166 52.381 0.00 0.00 0.00 2.57
3908 3932 1.833630 TGGGCAGTTGGTCAGATCTAG 59.166 52.381 0.00 0.00 0.00 2.43
3909 3933 1.951209 TGGGCAGTTGGTCAGATCTA 58.049 50.000 0.00 0.00 0.00 1.98
3910 3934 1.211457 GATGGGCAGTTGGTCAGATCT 59.789 52.381 0.00 0.00 0.00 2.75
3911 3935 1.673168 GATGGGCAGTTGGTCAGATC 58.327 55.000 0.00 0.00 0.00 2.75
3912 3936 0.257039 GGATGGGCAGTTGGTCAGAT 59.743 55.000 0.00 0.00 0.00 2.90
3913 3937 0.842030 AGGATGGGCAGTTGGTCAGA 60.842 55.000 0.00 0.00 0.00 3.27
3914 3938 0.911769 TAGGATGGGCAGTTGGTCAG 59.088 55.000 0.00 0.00 0.00 3.51
3915 3939 1.004277 GTTAGGATGGGCAGTTGGTCA 59.996 52.381 0.00 0.00 0.00 4.02
3916 3940 1.682087 GGTTAGGATGGGCAGTTGGTC 60.682 57.143 0.00 0.00 0.00 4.02
3917 3941 0.331616 GGTTAGGATGGGCAGTTGGT 59.668 55.000 0.00 0.00 0.00 3.67
3918 3942 0.625849 AGGTTAGGATGGGCAGTTGG 59.374 55.000 0.00 0.00 0.00 3.77
3919 3943 3.199880 CTAGGTTAGGATGGGCAGTTG 57.800 52.381 0.00 0.00 0.00 3.16
3922 3946 3.559727 AAGCCTAGGTTAGGATGGGCAG 61.560 54.545 11.31 0.00 45.43 4.85
3923 3947 1.628043 AAGCCTAGGTTAGGATGGGCA 60.628 52.381 11.31 0.00 45.43 5.36
3924 3948 1.141185 AAGCCTAGGTTAGGATGGGC 58.859 55.000 11.31 0.00 45.43 5.36
3925 3949 2.158608 CCAAAGCCTAGGTTAGGATGGG 60.159 54.545 11.31 2.31 45.43 4.00
3926 3950 2.509964 ACCAAAGCCTAGGTTAGGATGG 59.490 50.000 19.73 16.82 45.43 3.51
3927 3951 3.456277 AGACCAAAGCCTAGGTTAGGATG 59.544 47.826 19.73 8.31 45.43 3.51
3931 3955 4.443621 GCTAAGACCAAAGCCTAGGTTAG 58.556 47.826 11.31 8.67 38.50 2.34
3932 3956 4.482952 GCTAAGACCAAAGCCTAGGTTA 57.517 45.455 11.31 0.00 38.50 2.85
3933 3957 3.351794 GCTAAGACCAAAGCCTAGGTT 57.648 47.619 11.31 0.00 38.50 3.50
3961 3985 0.036952 CACAGTTCAGGATGGCGAGT 60.037 55.000 0.00 0.00 36.16 4.18
4055 4079 4.140805 AGGATGAAGGAGCTACTACCTGAT 60.141 45.833 0.00 0.00 36.56 2.90
4064 4088 1.871418 AGCACAGGATGAAGGAGCTA 58.129 50.000 0.00 0.00 39.69 3.32
4246 4270 8.907222 ATGAAAGCCAAAAATGAAGTTGTAAT 57.093 26.923 0.00 0.00 0.00 1.89
4247 4271 8.729805 AATGAAAGCCAAAAATGAAGTTGTAA 57.270 26.923 0.00 0.00 0.00 2.41
4248 4272 9.823647 TTAATGAAAGCCAAAAATGAAGTTGTA 57.176 25.926 0.00 0.00 0.00 2.41
4249 4273 8.729805 TTAATGAAAGCCAAAAATGAAGTTGT 57.270 26.923 0.00 0.00 0.00 3.32
4250 4274 9.654417 CTTTAATGAAAGCCAAAAATGAAGTTG 57.346 29.630 0.00 0.00 35.92 3.16
4251 4275 9.612066 TCTTTAATGAAAGCCAAAAATGAAGTT 57.388 25.926 0.00 0.00 41.68 2.66
4252 4276 9.264719 CTCTTTAATGAAAGCCAAAAATGAAGT 57.735 29.630 0.00 0.00 41.68 3.01
4253 4277 8.715088 CCTCTTTAATGAAAGCCAAAAATGAAG 58.285 33.333 0.00 0.00 41.68 3.02
4254 4278 8.428063 TCCTCTTTAATGAAAGCCAAAAATGAA 58.572 29.630 0.00 0.00 41.68 2.57
4255 4279 7.872483 GTCCTCTTTAATGAAAGCCAAAAATGA 59.128 33.333 0.00 0.00 41.68 2.57
4256 4280 7.874528 AGTCCTCTTTAATGAAAGCCAAAAATG 59.125 33.333 0.00 0.00 41.68 2.32
4327 4362 7.571080 AATTTCATGCTTGTCATTTGGTTTT 57.429 28.000 0.00 0.00 31.79 2.43
4417 4452 6.598525 TGTCATTTTACAAGTATGTTGCTCG 58.401 36.000 0.00 0.00 41.05 5.03
4420 4455 8.574196 AGTTTGTCATTTTACAAGTATGTTGC 57.426 30.769 0.00 0.00 40.29 4.17
4441 4476 9.978044 CTATCCGTAAGCTATACCTTTTAGTTT 57.022 33.333 0.00 0.00 0.00 2.66
4461 4496 5.237815 TGCCATTTTGACTATAGCTATCCG 58.762 41.667 10.16 5.48 0.00 4.18
4776 4816 9.871238 GATGGTTACTGAAGTCTGTAATTTAGA 57.129 33.333 12.21 0.00 40.59 2.10
4813 5204 8.950208 AATATCACTTTCAGGTTCTTACTAGC 57.050 34.615 0.00 0.00 0.00 3.42
5153 5563 3.700538 ACATAAAATTGGAGGCTGAGCA 58.299 40.909 6.82 0.00 0.00 4.26
5178 5588 7.624360 TTCTACTTTTTGTATATGGTGGCAG 57.376 36.000 0.00 0.00 0.00 4.85
5393 5803 6.763610 CCTGACTGGTGATAGTTTTCTAATCC 59.236 42.308 0.00 0.00 35.90 3.01
5671 6081 2.403252 ACAGCTTCTGTTATTCCCCG 57.597 50.000 0.00 0.00 42.59 5.73
5885 6295 4.808364 CACAGATAGTTAAAGGAGCAGAGC 59.192 45.833 0.00 0.00 0.00 4.09
5902 6312 2.556144 TCTTGAGCTTGCACACAGAT 57.444 45.000 0.00 0.00 0.00 2.90
6087 6497 7.028926 TGTTTGCCTCGTTTCTTATGTTTAA 57.971 32.000 0.00 0.00 0.00 1.52
6088 6498 6.261381 ACTGTTTGCCTCGTTTCTTATGTTTA 59.739 34.615 0.00 0.00 0.00 2.01
6089 6499 5.067283 ACTGTTTGCCTCGTTTCTTATGTTT 59.933 36.000 0.00 0.00 0.00 2.83
6198 6609 4.020485 AGACAACATAGGCGGAGTTTTAGT 60.020 41.667 0.00 0.00 0.00 2.24
6199 6610 4.504858 AGACAACATAGGCGGAGTTTTAG 58.495 43.478 0.00 0.00 0.00 1.85
6200 6611 4.020928 TGAGACAACATAGGCGGAGTTTTA 60.021 41.667 0.00 0.00 0.00 1.52
6201 6612 3.244422 TGAGACAACATAGGCGGAGTTTT 60.244 43.478 0.00 0.00 0.00 2.43
6202 6613 2.301870 TGAGACAACATAGGCGGAGTTT 59.698 45.455 0.00 0.00 0.00 2.66
6203 6614 1.899814 TGAGACAACATAGGCGGAGTT 59.100 47.619 0.00 0.00 0.00 3.01
6204 6615 1.557099 TGAGACAACATAGGCGGAGT 58.443 50.000 0.00 0.00 0.00 3.85
6205 6616 2.271800 GTTGAGACAACATAGGCGGAG 58.728 52.381 9.32 0.00 0.00 4.63
6206 6617 1.621317 TGTTGAGACAACATAGGCGGA 59.379 47.619 12.32 0.00 31.49 5.54
6207 6618 2.093306 TGTTGAGACAACATAGGCGG 57.907 50.000 12.32 0.00 31.49 6.13
6212 6623 3.196901 ACCGGCTATGTTGAGACAACATA 59.803 43.478 25.32 25.32 40.87 2.29
6213 6624 2.027192 ACCGGCTATGTTGAGACAACAT 60.027 45.455 25.70 25.70 42.82 2.71
6214 6625 1.346395 ACCGGCTATGTTGAGACAACA 59.654 47.619 17.39 17.39 39.66 3.33
6215 6626 2.000447 GACCGGCTATGTTGAGACAAC 59.000 52.381 0.00 7.55 39.66 3.32
6216 6627 1.066430 GGACCGGCTATGTTGAGACAA 60.066 52.381 0.00 0.00 39.66 3.18
6217 6628 0.535335 GGACCGGCTATGTTGAGACA 59.465 55.000 0.00 0.00 40.71 3.41
6218 6629 0.179081 GGGACCGGCTATGTTGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
6219 6630 0.616395 TGGGACCGGCTATGTTGAGA 60.616 55.000 0.00 0.00 0.00 3.27
6220 6631 0.251916 TTGGGACCGGCTATGTTGAG 59.748 55.000 0.00 0.00 0.00 3.02
6221 6632 0.251916 CTTGGGACCGGCTATGTTGA 59.748 55.000 0.00 0.00 0.00 3.18
6222 6633 1.376609 GCTTGGGACCGGCTATGTTG 61.377 60.000 0.00 0.00 0.00 3.33
6223 6634 1.077716 GCTTGGGACCGGCTATGTT 60.078 57.895 0.00 0.00 0.00 2.71
6224 6635 2.590092 GCTTGGGACCGGCTATGT 59.410 61.111 0.00 0.00 0.00 2.29
6225 6636 2.203209 GGCTTGGGACCGGCTATG 60.203 66.667 0.00 0.00 0.00 2.23
6226 6637 3.489513 GGGCTTGGGACCGGCTAT 61.490 66.667 0.00 0.00 0.00 2.97
6236 6647 1.077716 CTCCTTTACCCGGGCTTGG 60.078 63.158 24.08 17.99 0.00 3.61
6237 6648 1.077716 CCTCCTTTACCCGGGCTTG 60.078 63.158 24.08 8.51 0.00 4.01
6238 6649 1.229723 TCCTCCTTTACCCGGGCTT 60.230 57.895 24.08 4.08 0.00 4.35
6239 6650 1.689582 CTCCTCCTTTACCCGGGCT 60.690 63.158 24.08 10.93 0.00 5.19
6240 6651 2.743179 CCTCCTCCTTTACCCGGGC 61.743 68.421 24.08 0.00 0.00 6.13
6241 6652 2.070650 CCCTCCTCCTTTACCCGGG 61.071 68.421 22.25 22.25 0.00 5.73
6242 6653 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
6243 6654 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
6244 6655 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
6245 6656 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
6246 6657 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
6247 6658 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
6248 6659 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
6249 6660 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
6250 6661 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
6251 6662 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
6252 6663 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
6253 6664 1.561542 CAAGCCTATCACAACCCTCCT 59.438 52.381 0.00 0.00 0.00 3.69
6254 6665 1.408822 CCAAGCCTATCACAACCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
6255 6666 2.019156 GCCAAGCCTATCACAACCCTC 61.019 57.143 0.00 0.00 0.00 4.30
6256 6667 0.034089 GCCAAGCCTATCACAACCCT 60.034 55.000 0.00 0.00 0.00 4.34
6257 6668 1.376609 CGCCAAGCCTATCACAACCC 61.377 60.000 0.00 0.00 0.00 4.11
6258 6669 0.392461 TCGCCAAGCCTATCACAACC 60.392 55.000 0.00 0.00 0.00 3.77
6259 6670 1.009829 CTCGCCAAGCCTATCACAAC 58.990 55.000 0.00 0.00 0.00 3.32
6260 6671 0.744414 GCTCGCCAAGCCTATCACAA 60.744 55.000 0.00 0.00 45.92 3.33
6261 6672 1.153369 GCTCGCCAAGCCTATCACA 60.153 57.895 0.00 0.00 45.92 3.58
6262 6673 3.724494 GCTCGCCAAGCCTATCAC 58.276 61.111 0.00 0.00 45.92 3.06
6272 6683 0.308376 GTTTTTACGTTGGCTCGCCA 59.692 50.000 6.52 6.52 45.63 5.69
6273 6684 0.589708 AGTTTTTACGTTGGCTCGCC 59.410 50.000 0.00 0.00 0.00 5.54
6274 6685 1.262151 TGAGTTTTTACGTTGGCTCGC 59.738 47.619 0.00 0.00 0.00 5.03
6275 6686 2.661979 GCTGAGTTTTTACGTTGGCTCG 60.662 50.000 0.00 1.70 0.00 5.03
6276 6687 2.350484 GGCTGAGTTTTTACGTTGGCTC 60.350 50.000 0.00 0.00 0.00 4.70
6277 6688 1.607148 GGCTGAGTTTTTACGTTGGCT 59.393 47.619 0.00 0.00 0.00 4.75
6278 6689 1.335496 TGGCTGAGTTTTTACGTTGGC 59.665 47.619 0.00 0.00 0.00 4.52
6279 6690 2.616842 AGTGGCTGAGTTTTTACGTTGG 59.383 45.455 0.00 0.00 0.00 3.77
6280 6691 3.560068 AGAGTGGCTGAGTTTTTACGTTG 59.440 43.478 0.00 0.00 0.00 4.10
6281 6692 3.805207 AGAGTGGCTGAGTTTTTACGTT 58.195 40.909 0.00 0.00 0.00 3.99
6282 6693 3.470645 AGAGTGGCTGAGTTTTTACGT 57.529 42.857 0.00 0.00 0.00 3.57
6283 6694 5.163854 CCATAAGAGTGGCTGAGTTTTTACG 60.164 44.000 0.00 0.00 31.43 3.18
6284 6695 5.938125 TCCATAAGAGTGGCTGAGTTTTTAC 59.062 40.000 0.00 0.00 39.19 2.01
6285 6696 6.013725 TCTCCATAAGAGTGGCTGAGTTTTTA 60.014 38.462 0.00 0.00 43.71 1.52
6286 6697 4.985538 TCCATAAGAGTGGCTGAGTTTTT 58.014 39.130 0.00 0.00 39.19 1.94
6287 6698 4.287067 TCTCCATAAGAGTGGCTGAGTTTT 59.713 41.667 0.00 0.00 43.71 2.43
6288 6699 3.840666 TCTCCATAAGAGTGGCTGAGTTT 59.159 43.478 0.00 0.00 43.71 2.66
6289 6700 3.445008 TCTCCATAAGAGTGGCTGAGTT 58.555 45.455 0.00 0.00 43.71 3.01
6290 6701 3.107402 TCTCCATAAGAGTGGCTGAGT 57.893 47.619 0.00 0.00 43.71 3.41
6291 6702 3.640498 TCATCTCCATAAGAGTGGCTGAG 59.360 47.826 0.00 0.00 43.71 3.35
6292 6703 3.646534 TCATCTCCATAAGAGTGGCTGA 58.353 45.455 0.00 0.00 43.71 4.26
6293 6704 4.412796 TTCATCTCCATAAGAGTGGCTG 57.587 45.455 0.00 0.00 43.71 4.85
6294 6705 4.384647 GGTTTCATCTCCATAAGAGTGGCT 60.385 45.833 0.00 0.00 43.71 4.75
6295 6706 3.879892 GGTTTCATCTCCATAAGAGTGGC 59.120 47.826 0.00 0.00 43.71 5.01
6296 6707 4.080356 TGGGTTTCATCTCCATAAGAGTGG 60.080 45.833 0.00 0.00 43.71 4.00
6297 6708 5.102953 TGGGTTTCATCTCCATAAGAGTG 57.897 43.478 0.00 0.00 43.71 3.51
6298 6709 5.779241 TTGGGTTTCATCTCCATAAGAGT 57.221 39.130 0.00 0.00 43.71 3.24
6299 6710 6.886459 TCTTTTGGGTTTCATCTCCATAAGAG 59.114 38.462 9.33 0.00 40.80 2.85
6300 6711 6.789268 TCTTTTGGGTTTCATCTCCATAAGA 58.211 36.000 9.33 9.33 42.22 2.10
6301 6712 7.651027 ATCTTTTGGGTTTCATCTCCATAAG 57.349 36.000 0.00 0.00 39.39 1.73
6302 6713 8.434589 AAATCTTTTGGGTTTCATCTCCATAA 57.565 30.769 0.00 0.00 0.00 1.90
6303 6714 8.434589 AAAATCTTTTGGGTTTCATCTCCATA 57.565 30.769 0.00 0.00 0.00 2.74
6304 6715 6.940430 AAATCTTTTGGGTTTCATCTCCAT 57.060 33.333 0.00 0.00 0.00 3.41
6305 6716 6.516527 CGAAAATCTTTTGGGTTTCATCTCCA 60.517 38.462 0.00 0.00 31.66 3.86
6306 6717 5.863935 CGAAAATCTTTTGGGTTTCATCTCC 59.136 40.000 0.00 0.00 31.66 3.71
6307 6718 6.447162 ACGAAAATCTTTTGGGTTTCATCTC 58.553 36.000 0.00 0.00 31.27 2.75
6308 6719 6.405278 ACGAAAATCTTTTGGGTTTCATCT 57.595 33.333 0.00 0.00 31.27 2.90
6309 6720 6.073819 CCAACGAAAATCTTTTGGGTTTCATC 60.074 38.462 0.00 0.00 35.76 2.92
6310 6721 5.757808 CCAACGAAAATCTTTTGGGTTTCAT 59.242 36.000 0.00 0.00 35.76 2.57
6311 6722 5.112686 CCAACGAAAATCTTTTGGGTTTCA 58.887 37.500 0.00 0.00 35.76 2.69
6312 6723 5.651172 CCAACGAAAATCTTTTGGGTTTC 57.349 39.130 0.00 0.00 35.76 2.78
6317 6728 2.412870 GCCCCAACGAAAATCTTTTGG 58.587 47.619 0.00 0.00 38.62 3.28
6318 6729 2.058057 CGCCCCAACGAAAATCTTTTG 58.942 47.619 0.00 0.00 34.06 2.44
6319 6730 1.684450 ACGCCCCAACGAAAATCTTTT 59.316 42.857 0.00 0.00 36.70 2.27
6320 6731 1.000717 CACGCCCCAACGAAAATCTTT 60.001 47.619 0.00 0.00 36.70 2.52
6321 6732 0.596082 CACGCCCCAACGAAAATCTT 59.404 50.000 0.00 0.00 36.70 2.40
6322 6733 0.536460 ACACGCCCCAACGAAAATCT 60.536 50.000 0.00 0.00 36.70 2.40
6323 6734 0.312729 AACACGCCCCAACGAAAATC 59.687 50.000 0.00 0.00 36.70 2.17
6324 6735 0.031449 CAACACGCCCCAACGAAAAT 59.969 50.000 0.00 0.00 36.70 1.82
6325 6736 1.433879 CAACACGCCCCAACGAAAA 59.566 52.632 0.00 0.00 36.70 2.29
6326 6737 2.482333 CCAACACGCCCCAACGAAA 61.482 57.895 0.00 0.00 36.70 3.46
6327 6738 2.902846 CCAACACGCCCCAACGAA 60.903 61.111 0.00 0.00 36.70 3.85
6328 6739 3.700831 AACCAACACGCCCCAACGA 62.701 57.895 0.00 0.00 36.70 3.85
6329 6740 3.213402 AACCAACACGCCCCAACG 61.213 61.111 0.00 0.00 39.50 4.10
6330 6741 2.415426 CAACCAACACGCCCCAAC 59.585 61.111 0.00 0.00 0.00 3.77
6331 6742 3.532155 GCAACCAACACGCCCCAA 61.532 61.111 0.00 0.00 0.00 4.12
6334 6745 4.025401 CTCGCAACCAACACGCCC 62.025 66.667 0.00 0.00 0.00 6.13
6335 6746 2.240612 GATCTCGCAACCAACACGCC 62.241 60.000 0.00 0.00 0.00 5.68
6336 6747 1.132640 GATCTCGCAACCAACACGC 59.867 57.895 0.00 0.00 0.00 5.34
6337 6748 1.148310 AAGATCTCGCAACCAACACG 58.852 50.000 0.00 0.00 0.00 4.49
6338 6749 3.063997 CCATAAGATCTCGCAACCAACAC 59.936 47.826 0.00 0.00 0.00 3.32
6339 6750 3.270027 CCATAAGATCTCGCAACCAACA 58.730 45.455 0.00 0.00 0.00 3.33
6340 6751 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
6341 6752 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
6342 6753 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
6343 6754 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
6344 6755 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
6345 6756 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
6346 6757 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
6361 6772 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
6362 6773 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
6363 6774 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
6364 6775 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
6365 6776 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
6366 6777 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
6367 6778 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
6368 6779 1.134371 GCAAGTTGGGGTAGGCTAGAG 60.134 57.143 4.75 0.00 0.00 2.43
6369 6780 0.909623 GCAAGTTGGGGTAGGCTAGA 59.090 55.000 4.75 0.00 0.00 2.43
6370 6781 0.912486 AGCAAGTTGGGGTAGGCTAG 59.088 55.000 4.75 0.00 0.00 3.42
6371 6782 1.004277 CAAGCAAGTTGGGGTAGGCTA 59.996 52.381 4.75 0.00 31.82 3.93
6372 6783 0.251341 CAAGCAAGTTGGGGTAGGCT 60.251 55.000 4.75 0.00 31.82 4.58
6373 6784 2.267045 CAAGCAAGTTGGGGTAGGC 58.733 57.895 4.75 0.00 31.82 3.93
6381 6792 2.029918 GCCTTTAGTCCCAAGCAAGTTG 60.030 50.000 0.00 0.00 35.71 3.16
6382 6793 2.158460 AGCCTTTAGTCCCAAGCAAGTT 60.158 45.455 0.00 0.00 0.00 2.66
6383 6794 1.425448 AGCCTTTAGTCCCAAGCAAGT 59.575 47.619 0.00 0.00 0.00 3.16
6384 6795 2.206576 AGCCTTTAGTCCCAAGCAAG 57.793 50.000 0.00 0.00 0.00 4.01
6385 6796 2.627699 CAAAGCCTTTAGTCCCAAGCAA 59.372 45.455 0.00 0.00 0.00 3.91
6386 6797 2.238521 CAAAGCCTTTAGTCCCAAGCA 58.761 47.619 0.00 0.00 0.00 3.91
6387 6798 2.239400 ACAAAGCCTTTAGTCCCAAGC 58.761 47.619 0.00 0.00 0.00 4.01
6388 6799 3.636764 ACAACAAAGCCTTTAGTCCCAAG 59.363 43.478 0.00 0.00 0.00 3.61
6389 6800 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
6390 6801 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
6391 6802 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
6392 6803 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
6393 6804 5.867174 ACAAACAACAACAAAGCCTTTAGTC 59.133 36.000 0.00 0.00 0.00 2.59
6394 6805 5.789521 ACAAACAACAACAAAGCCTTTAGT 58.210 33.333 0.00 0.00 0.00 2.24
6395 6806 6.533185 CAACAAACAACAACAAAGCCTTTAG 58.467 36.000 0.00 0.00 0.00 1.85
6396 6807 5.106908 GCAACAAACAACAACAAAGCCTTTA 60.107 36.000 0.00 0.00 0.00 1.85
6397 6808 4.320129 GCAACAAACAACAACAAAGCCTTT 60.320 37.500 0.00 0.00 0.00 3.11
6398 6809 3.188254 GCAACAAACAACAACAAAGCCTT 59.812 39.130 0.00 0.00 0.00 4.35
6399 6810 2.741517 GCAACAAACAACAACAAAGCCT 59.258 40.909 0.00 0.00 0.00 4.58
6400 6811 2.481952 TGCAACAAACAACAACAAAGCC 59.518 40.909 0.00 0.00 0.00 4.35
6401 6812 3.431572 TCTGCAACAAACAACAACAAAGC 59.568 39.130 0.00 0.00 0.00 3.51
6402 6813 4.447054 TGTCTGCAACAAACAACAACAAAG 59.553 37.500 0.00 0.00 34.03 2.77
6403 6814 4.210120 GTGTCTGCAACAAACAACAACAAA 59.790 37.500 3.74 0.00 40.31 2.83
6404 6815 3.738282 GTGTCTGCAACAAACAACAACAA 59.262 39.130 3.74 0.00 40.31 2.83
6405 6816 3.243535 TGTGTCTGCAACAAACAACAACA 60.244 39.130 3.74 0.00 40.31 3.33
6406 6817 3.121113 GTGTGTCTGCAACAAACAACAAC 59.879 43.478 13.96 2.73 44.38 3.32
6407 6818 3.005261 AGTGTGTCTGCAACAAACAACAA 59.995 39.130 18.46 0.00 46.97 2.83
6408 6819 2.556189 AGTGTGTCTGCAACAAACAACA 59.444 40.909 18.46 5.60 46.97 3.33
6409 6820 3.216147 AGTGTGTCTGCAACAAACAAC 57.784 42.857 18.46 9.44 46.97 3.32
6410 6821 5.157781 GTTTAGTGTGTCTGCAACAAACAA 58.842 37.500 18.46 11.10 46.97 2.83
6411 6822 4.380023 GGTTTAGTGTGTCTGCAACAAACA 60.380 41.667 18.46 5.05 46.97 2.83
6412 6823 4.102649 GGTTTAGTGTGTCTGCAACAAAC 58.897 43.478 11.97 11.97 45.20 2.93
6413 6824 3.759086 TGGTTTAGTGTGTCTGCAACAAA 59.241 39.130 3.74 0.00 40.31 2.83
6414 6825 3.127895 GTGGTTTAGTGTGTCTGCAACAA 59.872 43.478 3.74 0.00 40.31 2.83
6415 6826 2.680841 GTGGTTTAGTGTGTCTGCAACA 59.319 45.455 0.00 0.00 34.78 3.33
6416 6827 2.032924 GGTGGTTTAGTGTGTCTGCAAC 59.967 50.000 0.00 0.00 0.00 4.17
6417 6828 2.294074 GGTGGTTTAGTGTGTCTGCAA 58.706 47.619 0.00 0.00 0.00 4.08
6418 6829 1.476110 GGGTGGTTTAGTGTGTCTGCA 60.476 52.381 0.00 0.00 0.00 4.41
6419 6830 1.235724 GGGTGGTTTAGTGTGTCTGC 58.764 55.000 0.00 0.00 0.00 4.26
6420 6831 1.544759 GGGGGTGGTTTAGTGTGTCTG 60.545 57.143 0.00 0.00 0.00 3.51
6421 6832 0.769247 GGGGGTGGTTTAGTGTGTCT 59.231 55.000 0.00 0.00 0.00 3.41
6422 6833 0.475044 TGGGGGTGGTTTAGTGTGTC 59.525 55.000 0.00 0.00 0.00 3.67
6423 6834 1.074889 GATGGGGGTGGTTTAGTGTGT 59.925 52.381 0.00 0.00 0.00 3.72
6424 6835 1.615919 GGATGGGGGTGGTTTAGTGTG 60.616 57.143 0.00 0.00 0.00 3.82
6425 6836 0.702316 GGATGGGGGTGGTTTAGTGT 59.298 55.000 0.00 0.00 0.00 3.55
6426 6837 0.701731 TGGATGGGGGTGGTTTAGTG 59.298 55.000 0.00 0.00 0.00 2.74
6548 6959 3.457610 AACAAATTCCAGGTTGCTGTG 57.542 42.857 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.