Multiple sequence alignment - TraesCS7A01G259700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G259700 chr7A 100.000 6082 0 0 1266 7347 251742566 251748647 0.000000e+00 11232.0
1 TraesCS7A01G259700 chr7A 100.000 1151 0 0 1 1151 251741301 251742451 0.000000e+00 2126.0
2 TraesCS7A01G259700 chr7D 94.605 6135 250 24 1269 7347 236639651 236645760 0.000000e+00 9420.0
3 TraesCS7A01G259700 chr7D 92.633 733 36 12 425 1151 236638807 236639527 0.000000e+00 1038.0
4 TraesCS7A01G259700 chr7D 88.152 422 42 6 4 422 236638358 236638774 5.120000e-136 496.0
5 TraesCS7A01G259700 chr7D 88.636 220 21 3 2006 2222 13688480 13688698 1.570000e-66 265.0
6 TraesCS7A01G259700 chr7B 96.399 2777 77 8 3378 6142 213249203 213251968 0.000000e+00 4553.0
7 TraesCS7A01G259700 chr7B 95.262 2005 73 8 1269 3261 213247142 213249136 0.000000e+00 3157.0
8 TraesCS7A01G259700 chr7B 92.653 735 35 14 424 1151 213246296 213247018 0.000000e+00 1040.0
9 TraesCS7A01G259700 chr7B 85.132 760 97 10 6596 7347 213252662 213253413 0.000000e+00 763.0
10 TraesCS7A01G259700 chr7B 90.466 472 17 10 6140 6594 213252049 213252509 1.360000e-166 597.0
11 TraesCS7A01G259700 chr7B 93.312 314 18 3 1643 1955 137677504 137677815 1.870000e-125 460.0
12 TraesCS7A01G259700 chr7B 86.111 252 31 3 1972 2220 313691549 313691299 1.220000e-67 268.0
13 TraesCS7A01G259700 chr7B 96.226 53 2 0 3263 3315 213249158 213249210 3.650000e-13 87.9
14 TraesCS7A01G259700 chr1D 93.631 314 17 3 1643 1955 51859393 51859082 4.010000e-127 466.0
15 TraesCS7A01G259700 chr1D 92.222 90 7 0 3558 3647 101285148 101285237 2.150000e-25 128.0
16 TraesCS7A01G259700 chr5D 93.291 313 19 2 1643 1955 503304510 503304820 1.870000e-125 460.0
17 TraesCS7A01G259700 chr5D 92.971 313 21 1 1643 1955 6262265 6261954 8.690000e-124 455.0
18 TraesCS7A01G259700 chr5D 83.212 274 36 9 1956 2225 509436780 509437047 7.360000e-60 243.0
19 TraesCS7A01G259700 chr2D 92.949 312 20 2 1643 1953 135988167 135988477 3.130000e-123 453.0
20 TraesCS7A01G259700 chrUn 92.675 314 21 2 1643 1955 414538402 414538090 1.120000e-122 451.0
21 TraesCS7A01G259700 chr6D 92.675 314 21 2 1643 1955 429815801 429815489 1.120000e-122 451.0
22 TraesCS7A01G259700 chr6D 94.318 88 5 0 3558 3645 389976960 389976873 1.290000e-27 135.0
23 TraesCS7A01G259700 chr4B 87.786 262 25 6 165 421 540717604 540717863 4.310000e-77 300.0
24 TraesCS7A01G259700 chr4B 78.886 431 52 19 5172 5571 642086625 642087047 9.460000e-64 255.0
25 TraesCS7A01G259700 chr4B 94.118 85 5 0 3558 3642 41531417 41531501 5.980000e-26 130.0
26 TraesCS7A01G259700 chr3D 85.338 266 37 1 1955 2218 170240244 170240509 2.610000e-69 274.0
27 TraesCS7A01G259700 chr3D 87.821 156 17 2 6444 6599 104391406 104391253 1.630000e-41 182.0
28 TraesCS7A01G259700 chr3D 93.333 90 5 1 3558 3647 477907443 477907355 1.660000e-26 132.0
29 TraesCS7A01G259700 chr5A 79.108 426 55 17 5172 5571 680075672 680076089 5.650000e-66 263.0
30 TraesCS7A01G259700 chr3B 84.586 266 39 1 1955 2218 245514213 245514478 5.650000e-66 263.0
31 TraesCS7A01G259700 chr3B 93.333 90 5 1 3558 3647 637089781 637089693 1.660000e-26 132.0
32 TraesCS7A01G259700 chr2A 83.835 266 37 3 1957 2218 46113311 46113048 1.580000e-61 248.0
33 TraesCS7A01G259700 chr3A 83.271 269 36 6 1955 2218 207847011 207847275 9.530000e-59 239.0
34 TraesCS7A01G259700 chr4D 77.805 401 50 19 5202 5571 499290840 499291232 2.080000e-50 211.0
35 TraesCS7A01G259700 chr1A 93.333 90 6 0 3558 3647 104216547 104216458 4.620000e-27 134.0
36 TraesCS7A01G259700 chr4A 92.222 90 7 0 3557 3646 27643525 27643614 2.150000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G259700 chr7A 251741301 251748647 7346 False 6679.000000 11232 100.000000 1 7347 2 chr7A.!!$F1 7346
1 TraesCS7A01G259700 chr7D 236638358 236645760 7402 False 3651.333333 9420 91.796667 4 7347 3 chr7D.!!$F2 7343
2 TraesCS7A01G259700 chr7B 213246296 213253413 7117 False 1699.650000 4553 92.689667 424 7347 6 chr7B.!!$F2 6923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1028 0.387929 AGTGACCAAGCGAAGACGAA 59.612 50.000 0.00 0.00 42.66 3.85 F
1323 1367 0.175760 ATAGTGATGAGGTGCGCGTT 59.824 50.000 8.43 0.00 0.00 4.84 F
1983 2028 0.539986 ACGTCCGGAAATACATGCCT 59.460 50.000 5.23 0.00 0.00 4.75 F
3139 3186 1.561542 GTGAGAGGTGTTGGATGGGAT 59.438 52.381 0.00 0.00 0.00 3.85 F
3995 4075 1.945394 GAGAGGTGATTGCGCATTGAT 59.055 47.619 12.75 0.32 0.00 2.57 F
4558 4638 1.375551 ATGTTCCGTATTTCACCCGC 58.624 50.000 0.00 0.00 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2236 2.509548 CCCTCTGTCCCCAAATACATGA 59.490 50.000 0.00 0.00 0.00 3.07 R
2912 2959 4.147321 AGCATCCTGAGTGTGAAATTTGT 58.853 39.130 0.00 0.00 0.00 2.83 R
3597 3677 2.034179 AGACGTTTTTGCAGGCTAAACC 59.966 45.455 13.14 2.61 39.61 3.27 R
4389 4469 0.100503 AGTGCGACACAAAAGCCAAC 59.899 50.000 11.58 0.00 36.74 3.77 R
5135 5224 1.876156 GGCAGATAATCGCAAGGAAGG 59.124 52.381 0.00 0.00 38.47 3.46 R
6475 6668 0.392336 TTGCATGTTTGAAGTGCCCC 59.608 50.000 0.00 0.00 38.06 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.223900 TGTTTGCCATTTCGTGATGCAA 60.224 40.909 0.00 0.00 0.00 4.08
71 72 4.662145 ACTGAAGAAACTCAAAACAAGCG 58.338 39.130 0.00 0.00 0.00 4.68
113 114 1.586154 AAAAAGAGGCGGCCGACATG 61.586 55.000 36.60 0.75 0.00 3.21
134 135 3.069016 TGAAGAAGTTTACTCGTGAGGCA 59.931 43.478 1.43 0.00 0.00 4.75
135 136 3.027974 AGAAGTTTACTCGTGAGGCAC 57.972 47.619 1.43 0.00 0.00 5.01
137 138 2.150397 AGTTTACTCGTGAGGCACAC 57.850 50.000 4.88 4.88 45.11 3.82
147 148 3.165058 GTGAGGCACACGATAATGAGA 57.835 47.619 0.00 0.00 39.78 3.27
159 160 4.268644 ACGATAATGAGACATTGCTCAACG 59.731 41.667 12.60 15.25 46.94 4.10
180 181 1.854227 CTAAGGCCTCGTTCGGAATC 58.146 55.000 5.23 0.00 0.00 2.52
199 200 6.523201 CGGAATCGATGTTTAGAAAACAAAGG 59.477 38.462 9.08 2.88 39.00 3.11
211 213 9.990360 TTTAGAAAACAAAGGAAAGAAAACTGT 57.010 25.926 0.00 0.00 0.00 3.55
233 235 9.672673 ACTGTATATGAATATAATTGAGGTGCC 57.327 33.333 0.00 0.00 0.00 5.01
235 237 9.448438 TGTATATGAATATAATTGAGGTGCCAC 57.552 33.333 0.00 0.00 0.00 5.01
237 239 6.889301 ATGAATATAATTGAGGTGCCACTG 57.111 37.500 0.00 0.00 0.00 3.66
238 240 6.000246 TGAATATAATTGAGGTGCCACTGA 58.000 37.500 0.00 0.00 0.00 3.41
245 247 0.954452 GAGGTGCCACTGAAAACCTG 59.046 55.000 0.00 0.00 43.12 4.00
307 310 6.071391 GCTCTATTCATGGGAAAGGAAACAAA 60.071 38.462 0.00 0.00 36.43 2.83
309 312 4.953940 TTCATGGGAAAGGAAACAAAGG 57.046 40.909 0.00 0.00 0.00 3.11
315 318 2.416747 GAAAGGAAACAAAGGCCATGC 58.583 47.619 5.01 0.00 0.00 4.06
325 328 2.745281 CAAAGGCCATGCAGAAAAATGG 59.255 45.455 5.01 0.00 45.25 3.16
332 335 1.631405 TGCAGAAAAATGGGACCCAG 58.369 50.000 20.37 4.22 36.75 4.45
336 339 1.970640 AGAAAAATGGGACCCAGCAAC 59.029 47.619 20.37 9.12 36.75 4.17
337 340 1.970640 GAAAAATGGGACCCAGCAACT 59.029 47.619 20.37 0.00 36.75 3.16
352 355 5.418840 CCCAGCAACTAGGATACAATGTTTT 59.581 40.000 0.00 0.00 41.41 2.43
383 386 3.755378 ACTGTCATGCATGAACTTTCTCC 59.245 43.478 30.24 15.69 38.75 3.71
387 390 2.099141 TGCATGAACTTTCTCCCTCG 57.901 50.000 0.00 0.00 0.00 4.63
394 397 3.385433 TGAACTTTCTCCCTCGTGTTGTA 59.615 43.478 0.00 0.00 0.00 2.41
405 408 1.000506 TCGTGTTGTAGGCCTCAACTC 59.999 52.381 30.84 27.74 43.54 3.01
422 425 3.446442 ACTCTCATTTCCCATGCTTGT 57.554 42.857 0.00 0.00 0.00 3.16
434 467 3.700539 CCCATGCTTGTGATGGATGTTTA 59.299 43.478 1.63 0.00 42.81 2.01
435 468 4.202080 CCCATGCTTGTGATGGATGTTTAG 60.202 45.833 1.63 0.00 42.81 1.85
441 474 5.183904 GCTTGTGATGGATGTTTAGTTTCCT 59.816 40.000 0.00 0.00 0.00 3.36
453 486 7.925043 TGTTTAGTTTCCTGTGAAAGTACAA 57.075 32.000 0.00 0.48 43.00 2.41
458 491 3.838244 TCCTGTGAAAGTACAAGCTGT 57.162 42.857 0.00 0.00 0.00 4.40
474 507 5.940470 ACAAGCTGTAGAAACTTTCCTATGG 59.060 40.000 0.00 0.00 0.00 2.74
505 538 7.839680 ATCACTTCTTTCCTACAAACCAAAT 57.160 32.000 0.00 0.00 0.00 2.32
507 540 6.040391 TCACTTCTTTCCTACAAACCAAATGG 59.960 38.462 0.00 0.00 42.17 3.16
529 562 5.105310 TGGCACTTCAGTATAACTTCCTCTC 60.105 44.000 0.00 0.00 0.00 3.20
534 567 9.495572 CACTTCAGTATAACTTCCTCTCTTTTT 57.504 33.333 0.00 0.00 0.00 1.94
546 579 5.253330 TCCTCTCTTTTTATTTCCGTGCAT 58.747 37.500 0.00 0.00 0.00 3.96
619 653 1.464376 TAGCAGCGGAGACCATAGGC 61.464 60.000 0.00 0.00 0.00 3.93
760 795 2.596263 GCTAAACGCTCTGTGGTTTC 57.404 50.000 0.00 0.00 37.52 2.78
921 958 1.523758 GTCACCCAAATTCTGCGACT 58.476 50.000 0.00 0.00 0.00 4.18
928 965 4.522789 ACCCAAATTCTGCGACTACAAAAT 59.477 37.500 0.00 0.00 0.00 1.82
929 966 5.708230 ACCCAAATTCTGCGACTACAAAATA 59.292 36.000 0.00 0.00 0.00 1.40
930 967 6.377146 ACCCAAATTCTGCGACTACAAAATAT 59.623 34.615 0.00 0.00 0.00 1.28
931 968 7.554835 ACCCAAATTCTGCGACTACAAAATATA 59.445 33.333 0.00 0.00 0.00 0.86
932 969 7.855904 CCCAAATTCTGCGACTACAAAATATAC 59.144 37.037 0.00 0.00 0.00 1.47
933 970 8.612619 CCAAATTCTGCGACTACAAAATATACT 58.387 33.333 0.00 0.00 0.00 2.12
934 971 9.638300 CAAATTCTGCGACTACAAAATATACTC 57.362 33.333 0.00 0.00 0.00 2.59
990 1028 0.387929 AGTGACCAAGCGAAGACGAA 59.612 50.000 0.00 0.00 42.66 3.85
1295 1339 1.447314 GTCCGTGTTTAGGCTCGGG 60.447 63.158 11.14 0.00 43.30 5.14
1304 1348 5.422145 GTGTTTAGGCTCGGGATTTTAGTA 58.578 41.667 0.00 0.00 0.00 1.82
1323 1367 0.175760 ATAGTGATGAGGTGCGCGTT 59.824 50.000 8.43 0.00 0.00 4.84
1360 1404 2.123428 CGTACGATCGGGGTTCCCT 61.123 63.158 20.98 0.00 42.67 4.20
1379 1423 2.103941 CCTCTCCAGTTCTGATTAGGGC 59.896 54.545 1.00 0.00 0.00 5.19
1410 1454 2.296471 CTCGTTCCAGTACACTCCAACT 59.704 50.000 0.00 0.00 0.00 3.16
1449 1493 5.957798 TGCTACGTGTAGTTAGCATTTAGT 58.042 37.500 4.37 0.00 40.21 2.24
1453 1497 7.485913 GCTACGTGTAGTTAGCATTTAGTAACA 59.514 37.037 0.00 0.00 35.65 2.41
1454 1498 9.345517 CTACGTGTAGTTAGCATTTAGTAACAA 57.654 33.333 0.00 0.00 32.49 2.83
1467 1511 7.679638 GCATTTAGTAACAACAGCTATTCCTGG 60.680 40.741 0.00 0.00 37.16 4.45
1484 1528 4.389374 TCCTGGATTTCTCACAAGTTGTC 58.611 43.478 5.27 0.00 0.00 3.18
1488 1532 3.813166 GGATTTCTCACAAGTTGTCGGAA 59.187 43.478 5.27 10.34 0.00 4.30
1490 1534 4.811555 TTTCTCACAAGTTGTCGGAATG 57.188 40.909 5.27 0.00 0.00 2.67
1491 1535 3.744238 TCTCACAAGTTGTCGGAATGA 57.256 42.857 5.27 0.00 0.00 2.57
1495 1539 3.559655 TCACAAGTTGTCGGAATGAAGTG 59.440 43.478 5.27 0.00 0.00 3.16
1497 1541 3.809832 ACAAGTTGTCGGAATGAAGTGAG 59.190 43.478 1.64 0.00 0.00 3.51
1512 1556 5.019470 TGAAGTGAGCTGATTTCTCTAGGA 58.981 41.667 9.64 0.00 0.00 2.94
1518 1562 6.479660 GTGAGCTGATTTCTCTAGGAGATTTG 59.520 42.308 0.00 0.00 38.56 2.32
1521 1565 7.401246 AGCTGATTTCTCTAGGAGATTTGTTT 58.599 34.615 0.00 0.00 38.56 2.83
1524 1568 8.783833 TGATTTCTCTAGGAGATTTGTTTGAG 57.216 34.615 0.00 0.00 38.56 3.02
1542 1586 2.223971 TGAGGAACTTGACCGTTGACTC 60.224 50.000 0.00 0.00 41.55 3.36
1640 1684 0.621082 AAGAAGTTGGAGGGCCTAGC 59.379 55.000 5.73 0.00 34.31 3.42
1661 1705 7.597743 CCTAGCATACGATTACGAGGTTTATTT 59.402 37.037 0.00 0.00 42.66 1.40
1662 1706 7.173863 AGCATACGATTACGAGGTTTATTTG 57.826 36.000 0.00 0.00 42.66 2.32
1672 1716 5.866207 ACGAGGTTTATTTGAAGAGGAAGT 58.134 37.500 0.00 0.00 0.00 3.01
1732 1776 1.070445 CCCAGGCTTTGCAACATTTCA 59.930 47.619 0.00 0.00 0.00 2.69
1759 1803 2.064014 GAAAATTGCAACAGGAGCAGC 58.936 47.619 0.00 0.00 43.75 5.25
1875 1919 5.907662 AGTGGAGATGAATGGGAAGATAGAA 59.092 40.000 0.00 0.00 0.00 2.10
1983 2028 0.539986 ACGTCCGGAAATACATGCCT 59.460 50.000 5.23 0.00 0.00 4.75
2170 2215 5.136828 TGGTCAAACCTAGAAAGCATTGAA 58.863 37.500 0.00 0.00 39.58 2.69
2227 2272 4.610333 ACAGAGGGAGTATGTGACATGTA 58.390 43.478 8.61 0.00 0.00 2.29
2685 2731 9.258629 TGATGATATCTCAAGGTTTCCATTTTT 57.741 29.630 3.98 0.00 34.37 1.94
2985 3032 2.158726 AGGTTTGCGACAAGTCCCTTTA 60.159 45.455 0.00 0.00 0.00 1.85
3139 3186 1.561542 GTGAGAGGTGTTGGATGGGAT 59.438 52.381 0.00 0.00 0.00 3.85
3261 3318 2.106338 TCTGAATGCTGACACCCAGAAA 59.894 45.455 0.00 0.00 45.78 2.52
3351 3428 4.490706 AGTACAAGTGGAGGGAGTTTACT 58.509 43.478 0.00 0.00 0.00 2.24
3426 3503 8.625651 GTCTCAGTGCTTTCATAGACTATTCTA 58.374 37.037 0.00 0.00 38.76 2.10
3563 3643 9.220767 GATACAATTTTGTTCTCTTGTACTCCT 57.779 33.333 0.63 0.00 42.35 3.69
3597 3677 9.061610 CAAAATATAAGACGTTTTTGTAGGCTG 57.938 33.333 11.08 0.13 35.41 4.85
3858 3938 3.742640 GCAATCCTTGTAGCCTACCTCAG 60.743 52.174 0.00 0.00 0.00 3.35
3995 4075 1.945394 GAGAGGTGATTGCGCATTGAT 59.055 47.619 12.75 0.32 0.00 2.57
4035 4115 6.575162 AGTTGAAAGCTGAACCGATTTAAT 57.425 33.333 0.00 0.00 0.00 1.40
4050 4130 4.335594 CGATTTAATGTTCCTCTGGGGTTC 59.664 45.833 0.00 0.00 36.25 3.62
4070 4150 7.814587 GGGGTTCAGACTATTTTTCAAAATCAG 59.185 37.037 0.69 1.82 39.24 2.90
4104 4184 6.959671 TGTTTTTGTCCTAGTTTTTGCTTG 57.040 33.333 0.00 0.00 0.00 4.01
4146 4226 5.771153 TCATGCATGTGTTTCTTTGAAGA 57.229 34.783 25.43 0.00 0.00 2.87
4221 4301 8.571461 AGCTGATTTTGATGAAATAGAGTCAA 57.429 30.769 0.00 0.00 38.06 3.18
4354 4434 3.209410 ACAACACCTGAAGCTTCTCTTG 58.791 45.455 26.09 20.18 34.56 3.02
4374 4454 6.711277 TCTTGCTGAACATATATATCCACCC 58.289 40.000 0.00 0.00 0.00 4.61
4389 4469 1.670811 CCACCCTAAGCTTATTGTGCG 59.329 52.381 21.48 14.55 35.28 5.34
4414 4494 3.234386 GCTTTTGTGTCGCACTTTATCC 58.766 45.455 10.54 0.00 35.11 2.59
4528 4608 6.015940 GGCTAAATATTCTGCTGTTATGGCTT 60.016 38.462 10.94 0.00 0.00 4.35
4558 4638 1.375551 ATGTTCCGTATTTCACCCGC 58.624 50.000 0.00 0.00 0.00 6.13
4756 4836 5.304101 TGGGAATAAACACTGATTGCTGTTT 59.696 36.000 5.07 5.07 42.09 2.83
4890 4970 6.998673 AGGTATAATGTACTGGCAATTCTTCC 59.001 38.462 0.00 0.00 0.00 3.46
5135 5224 1.334869 CCGGAGGCTGTTTGCATATTC 59.665 52.381 0.00 0.00 46.14 1.75
5281 5370 4.833380 GTGGAGCTGGTATTCTGGTAGATA 59.167 45.833 0.00 0.00 0.00 1.98
5520 5614 4.723309 ACTTCCATGATAGAAAGGGATGC 58.277 43.478 0.00 0.00 0.00 3.91
5631 5725 1.877258 GCTGGATATGCAGTCTCAGGC 60.877 57.143 23.28 6.37 0.00 4.85
5834 5928 1.487558 GGCGGTAAGTAGAATTCCCCA 59.512 52.381 0.65 0.00 0.00 4.96
5837 5931 3.385755 GCGGTAAGTAGAATTCCCCACTA 59.614 47.826 0.65 0.00 0.00 2.74
5939 6033 2.217620 CGCAAACATTCAACCCGAAAAC 59.782 45.455 0.00 0.00 37.12 2.43
6011 6105 8.992073 CATCGGATCAAAATACAGAATACATCA 58.008 33.333 0.00 0.00 0.00 3.07
6185 6362 2.582446 GGTTTGTTACCAGCGTTACG 57.418 50.000 0.00 0.00 46.92 3.18
6197 6374 3.124636 CCAGCGTTACGAATAACTGCTTT 59.875 43.478 9.62 0.00 42.85 3.51
6215 6392 6.548622 ACTGCTTTTGTTGGCTGATATGATAT 59.451 34.615 0.00 0.00 0.00 1.63
6391 6568 6.194235 TCAATAGGGTTATTTTCCAGCATGT 58.806 36.000 0.00 0.00 0.00 3.21
6475 6668 0.173255 CCAACGGCTGCCCTAAAATG 59.827 55.000 14.12 0.00 0.00 2.32
6499 6692 4.937015 GGGCACTTCAAACATGCAAATATT 59.063 37.500 0.00 0.00 41.27 1.28
6672 7018 0.386858 ATGTTGTCGGACTCGTCACG 60.387 55.000 9.88 0.00 34.54 4.35
6696 7042 1.961277 CGCCGAGCTCAACCTTGTT 60.961 57.895 15.40 0.00 0.00 2.83
6698 7044 1.576421 CCGAGCTCAACCTTGTTGC 59.424 57.895 15.40 0.00 0.00 4.17
6713 7059 1.069090 TTGCCGAACTCGAGCTTGT 59.931 52.632 13.61 0.00 43.02 3.16
6714 7060 0.531974 TTGCCGAACTCGAGCTTGTT 60.532 50.000 13.61 0.00 43.02 2.83
6715 7061 1.221466 TGCCGAACTCGAGCTTGTTG 61.221 55.000 13.61 0.00 43.02 3.33
6716 7062 1.222115 GCCGAACTCGAGCTTGTTGT 61.222 55.000 13.61 0.00 43.02 3.32
6729 7095 1.876156 CTTGTTGTCCCTCTGTCTTGC 59.124 52.381 0.00 0.00 0.00 4.01
6735 7101 2.507992 CCTCTGTCTTGCGCTCCG 60.508 66.667 9.73 0.00 0.00 4.63
6746 7112 2.357517 CGCTCCGCCTTCTTGTGT 60.358 61.111 0.00 0.00 0.00 3.72
6788 7154 0.392193 ACTCCTTCGCTTGCATGAGG 60.392 55.000 3.33 1.77 0.00 3.86
6798 7164 2.568090 GCATGAGGTGCGGGTTTG 59.432 61.111 0.00 0.00 45.23 2.93
6829 7195 1.001020 TTGCCATCACCGCCTCATT 60.001 52.632 0.00 0.00 0.00 2.57
6831 7197 2.484062 GCCATCACCGCCTCATTGG 61.484 63.158 0.00 0.00 39.35 3.16
6841 7207 1.607801 GCCTCATTGGTTTCCCTGGC 61.608 60.000 0.00 0.00 38.35 4.85
6885 7251 0.673956 GGTCTTCCTCTTTGTCGGGC 60.674 60.000 0.00 0.00 0.00 6.13
6955 7321 3.099905 TCTCGATCACCAGGAAGTTGAT 58.900 45.455 0.00 0.00 0.00 2.57
6966 7332 1.608025 GGAAGTTGATCTCGTGCCACA 60.608 52.381 0.00 0.00 0.00 4.17
6971 7337 3.356639 GATCTCGTGCCACAGCCGA 62.357 63.158 0.00 0.00 38.70 5.54
6986 7352 2.574018 CCGACTGAGCCTCCACACA 61.574 63.158 0.00 0.00 0.00 3.72
6995 7361 1.626654 GCCTCCACACAACGATGTCG 61.627 60.000 0.00 0.11 46.33 4.35
7044 7410 0.392461 GAAGGTGCCGAGCCAATACA 60.392 55.000 0.00 0.00 0.00 2.29
7057 7423 1.153901 AATACAGTCGGCCGTCACG 60.154 57.895 27.15 17.01 0.00 4.35
7077 7443 2.723010 CGCTGAAACTCGATGCTGAAAC 60.723 50.000 0.00 0.00 0.00 2.78
7089 7456 1.301401 CTGAAACGGCCGAACTCCA 60.301 57.895 35.90 19.45 0.00 3.86
7096 7463 2.656069 GGCCGAACTCCAGTGGCTA 61.656 63.158 3.51 0.00 46.72 3.93
7111 7478 1.447314 GCTAAACGCCACGGTAGCT 60.447 57.895 14.10 0.00 39.63 3.32
7138 7505 1.750351 CTCTTCACACGTTTCGACGA 58.250 50.000 5.91 0.00 36.85 4.20
7160 7527 3.787676 CGACAGATGCGGCGCAAA 61.788 61.111 39.46 17.80 43.62 3.68
7161 7528 2.202349 GACAGATGCGGCGCAAAC 60.202 61.111 39.46 31.73 43.62 2.93
7163 7530 2.202388 CAGATGCGGCGCAAACAG 60.202 61.111 39.46 25.96 43.62 3.16
7171 7538 2.728383 GCGCAAACAGCAGTGCAG 60.728 61.111 19.20 12.56 46.13 4.41
7175 7542 1.601162 CGCAAACAGCAGTGCAGATTT 60.601 47.619 19.20 11.33 46.13 2.17
7251 7618 3.878667 GCCGATTGGAGGAGGGGG 61.879 72.222 1.98 0.00 37.49 5.40
7255 7622 1.382695 GATTGGAGGAGGGGGACGA 60.383 63.158 0.00 0.00 0.00 4.20
7262 7629 1.381327 GGAGGGGGACGACAGATCA 60.381 63.158 0.00 0.00 0.00 2.92
7265 7632 1.381327 GGGGGACGACAGATCAGGA 60.381 63.158 0.00 0.00 0.00 3.86
7268 7635 1.115467 GGGACGACAGATCAGGACAT 58.885 55.000 0.00 0.00 0.00 3.06
7284 7651 1.938577 GACATCATGGTAGTGCAGCTG 59.061 52.381 10.11 10.11 0.00 4.24
7286 7653 1.669265 CATCATGGTAGTGCAGCTGTG 59.331 52.381 16.64 2.78 0.00 3.66
7306 7673 2.501610 GGGAGTGTCTGGATCCGC 59.498 66.667 7.39 0.31 33.68 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.029200 TGCATCACGAAATGGCAAACAT 60.029 40.909 0.00 0.00 43.07 2.71
2 3 2.063156 TGCATCACGAAATGGCAAAC 57.937 45.000 0.00 0.00 0.00 2.93
3 4 2.808523 TTGCATCACGAAATGGCAAA 57.191 40.000 0.00 0.00 0.00 3.68
4 5 2.808523 TTTGCATCACGAAATGGCAA 57.191 40.000 0.00 0.00 0.00 4.52
5 6 2.808523 TTTTGCATCACGAAATGGCA 57.191 40.000 0.00 0.00 0.00 4.92
22 23 7.653767 ATTATCGTTCTCTTGTCGAGTTTTT 57.346 32.000 0.00 0.00 40.75 1.94
31 32 9.706691 TTCTTCAGTAAATTATCGTTCTCTTGT 57.293 29.630 0.00 0.00 0.00 3.16
45 46 7.432252 CGCTTGTTTTGAGTTTCTTCAGTAAAT 59.568 33.333 0.00 0.00 0.00 1.40
65 66 2.012673 GCAAGATCATCCTTCGCTTGT 58.987 47.619 0.00 0.00 38.48 3.16
71 72 2.035576 GGCATTGGCAAGATCATCCTTC 59.964 50.000 5.96 0.00 43.71 3.46
103 104 1.156736 AAACTTCTTCATGTCGGCCG 58.843 50.000 22.12 22.12 0.00 6.13
113 114 3.429207 GTGCCTCACGAGTAAACTTCTTC 59.571 47.826 0.00 0.00 0.00 2.87
134 135 4.758688 TGAGCAATGTCTCATTATCGTGT 58.241 39.130 3.84 0.00 38.11 4.49
135 136 5.496387 GTTGAGCAATGTCTCATTATCGTG 58.504 41.667 7.88 0.00 42.12 4.35
137 138 4.318333 CCGTTGAGCAATGTCTCATTATCG 60.318 45.833 7.88 9.73 42.12 2.92
138 139 4.553547 GCCGTTGAGCAATGTCTCATTATC 60.554 45.833 7.88 0.00 42.12 1.75
139 140 3.313526 GCCGTTGAGCAATGTCTCATTAT 59.686 43.478 7.88 0.00 42.12 1.28
140 141 2.677836 GCCGTTGAGCAATGTCTCATTA 59.322 45.455 7.88 0.00 42.12 1.90
141 142 1.470098 GCCGTTGAGCAATGTCTCATT 59.530 47.619 7.88 0.00 42.12 2.57
142 143 1.089920 GCCGTTGAGCAATGTCTCAT 58.910 50.000 7.88 0.00 42.12 2.90
144 145 2.010145 TAGCCGTTGAGCAATGTCTC 57.990 50.000 2.16 0.00 34.23 3.36
145 146 2.350522 CTTAGCCGTTGAGCAATGTCT 58.649 47.619 2.16 0.00 34.23 3.41
146 147 1.398390 CCTTAGCCGTTGAGCAATGTC 59.602 52.381 2.16 0.00 34.23 3.06
147 148 1.453155 CCTTAGCCGTTGAGCAATGT 58.547 50.000 2.16 0.00 34.23 2.71
176 177 9.458374 TTTCCTTTGTTTTCTAAACATCGATTC 57.542 29.630 0.00 0.00 0.00 2.52
180 181 8.850454 TTCTTTCCTTTGTTTTCTAAACATCG 57.150 30.769 5.88 1.48 0.00 3.84
211 213 9.671279 CAGTGGCACCTCAATTATATTCATATA 57.329 33.333 15.27 0.00 0.00 0.86
215 217 6.000246 TCAGTGGCACCTCAATTATATTCA 58.000 37.500 15.27 0.00 0.00 2.57
233 235 6.618287 TTCTACATTCACAGGTTTTCAGTG 57.382 37.500 0.00 0.00 34.67 3.66
235 237 7.026631 TGTTTCTACATTCACAGGTTTTCAG 57.973 36.000 0.00 0.00 0.00 3.02
237 239 7.379529 CACATGTTTCTACATTCACAGGTTTTC 59.620 37.037 0.00 0.00 42.29 2.29
238 240 7.068103 TCACATGTTTCTACATTCACAGGTTTT 59.932 33.333 0.00 0.00 42.29 2.43
245 247 6.801539 TCCTTCACATGTTTCTACATTCAC 57.198 37.500 0.00 0.00 42.29 3.18
282 285 4.949856 TGTTTCCTTTCCCATGAATAGAGC 59.050 41.667 0.00 0.00 0.00 4.09
283 286 7.363268 CCTTTGTTTCCTTTCCCATGAATAGAG 60.363 40.741 0.00 0.00 0.00 2.43
287 290 4.263025 GCCTTTGTTTCCTTTCCCATGAAT 60.263 41.667 0.00 0.00 0.00 2.57
291 294 1.977854 GGCCTTTGTTTCCTTTCCCAT 59.022 47.619 0.00 0.00 0.00 4.00
307 310 0.906775 CCCATTTTTCTGCATGGCCT 59.093 50.000 3.32 0.00 39.02 5.19
309 312 1.405933 GGTCCCATTTTTCTGCATGGC 60.406 52.381 0.00 0.00 39.02 4.40
315 318 1.631405 TGCTGGGTCCCATTTTTCTG 58.369 50.000 12.23 0.00 30.82 3.02
325 328 2.116238 TGTATCCTAGTTGCTGGGTCC 58.884 52.381 0.00 0.00 33.63 4.46
362 365 3.128242 GGGAGAAAGTTCATGCATGACAG 59.872 47.826 28.72 1.64 36.36 3.51
369 372 1.734465 CACGAGGGAGAAAGTTCATGC 59.266 52.381 0.00 0.00 0.00 4.06
370 373 3.045601 ACACGAGGGAGAAAGTTCATG 57.954 47.619 0.00 0.00 0.00 3.07
383 386 0.320374 TTGAGGCCTACAACACGAGG 59.680 55.000 4.42 0.00 35.78 4.63
387 390 2.037251 TGAGAGTTGAGGCCTACAACAC 59.963 50.000 31.80 28.07 46.58 3.32
394 397 1.283321 GGGAAATGAGAGTTGAGGCCT 59.717 52.381 3.86 3.86 0.00 5.19
405 408 3.181479 CCATCACAAGCATGGGAAATGAG 60.181 47.826 0.00 0.00 43.63 2.90
422 425 5.875224 TCACAGGAAACTAAACATCCATCA 58.125 37.500 0.00 0.00 40.21 3.07
434 467 4.576463 CAGCTTGTACTTTCACAGGAAACT 59.424 41.667 0.00 0.00 46.44 2.66
435 468 4.335594 ACAGCTTGTACTTTCACAGGAAAC 59.664 41.667 0.00 0.00 38.07 2.78
441 474 6.346096 AGTTTCTACAGCTTGTACTTTCACA 58.654 36.000 0.00 0.00 0.00 3.58
453 486 6.374417 TTCCATAGGAAAGTTTCTACAGCT 57.626 37.500 15.05 6.13 38.93 4.24
495 528 2.765699 ACTGAAGTGCCATTTGGTTTGT 59.234 40.909 0.00 0.00 37.57 2.83
505 538 4.777896 AGAGGAAGTTATACTGAAGTGCCA 59.222 41.667 0.00 0.00 30.40 4.92
507 540 6.215495 AGAGAGGAAGTTATACTGAAGTGC 57.785 41.667 0.00 0.00 0.00 4.40
529 562 8.702163 AAGGAAATATGCACGGAAATAAAAAG 57.298 30.769 0.00 0.00 0.00 2.27
534 567 6.770303 TGATGAAGGAAATATGCACGGAAATA 59.230 34.615 0.00 0.00 0.00 1.40
535 568 5.593909 TGATGAAGGAAATATGCACGGAAAT 59.406 36.000 0.00 0.00 0.00 2.17
541 574 6.294397 GGAGGAATGATGAAGGAAATATGCAC 60.294 42.308 0.00 0.00 0.00 4.57
546 579 6.607198 GGTTTGGAGGAATGATGAAGGAAATA 59.393 38.462 0.00 0.00 0.00 1.40
619 653 8.945481 ATTTAGACAGATCATTCTCAAGTCTG 57.055 34.615 0.00 0.00 41.47 3.51
709 744 1.005662 GTTTTATACGAGGCGAACGGC 60.006 52.381 12.58 12.58 42.51 5.68
921 958 3.132646 ACGCACGGGGAGTATATTTTGTA 59.867 43.478 0.00 0.00 0.00 2.41
928 965 2.788640 GGCACGCACGGGGAGTATA 61.789 63.158 0.00 0.00 0.00 1.47
929 966 4.157120 GGCACGCACGGGGAGTAT 62.157 66.667 0.00 0.00 0.00 2.12
990 1028 1.764054 CCCCGGCATCTCTCTTCCT 60.764 63.158 0.00 0.00 0.00 3.36
1097 1135 2.092882 GCGACCGAACAGCAGGTAC 61.093 63.158 0.00 0.00 41.51 3.34
1295 1339 6.128795 GCGCACCTCATCACTATACTAAAATC 60.129 42.308 0.30 0.00 0.00 2.17
1304 1348 0.175760 AACGCGCACCTCATCACTAT 59.824 50.000 5.73 0.00 0.00 2.12
1323 1367 2.642254 CCTTGGTACCGGCAGTCGA 61.642 63.158 7.57 0.00 42.43 4.20
1360 1404 1.757118 CGCCCTAATCAGAACTGGAGA 59.243 52.381 1.93 0.00 0.00 3.71
1410 1454 2.679092 CAGCAGGCTGGAATCCCA 59.321 61.111 17.64 0.00 40.17 4.37
1425 1469 6.034591 ACTAAATGCTAACTACACGTAGCAG 58.965 40.000 13.34 3.54 46.84 4.24
1431 1475 8.009984 TGTTGTTACTAAATGCTAACTACACG 57.990 34.615 5.06 0.00 35.25 4.49
1449 1493 6.721318 AGAAATCCAGGAATAGCTGTTGTTA 58.279 36.000 0.00 0.00 0.00 2.41
1453 1497 5.189180 GTGAGAAATCCAGGAATAGCTGTT 58.811 41.667 0.00 0.00 0.00 3.16
1454 1498 4.225942 TGTGAGAAATCCAGGAATAGCTGT 59.774 41.667 0.00 0.00 0.00 4.40
1467 1511 5.179368 TCATTCCGACAACTTGTGAGAAATC 59.821 40.000 0.00 0.00 0.00 2.17
1484 1528 3.937706 AGAAATCAGCTCACTTCATTCCG 59.062 43.478 0.00 0.00 0.00 4.30
1488 1532 5.660417 TCCTAGAGAAATCAGCTCACTTCAT 59.340 40.000 0.00 0.00 34.85 2.57
1490 1534 5.359576 TCTCCTAGAGAAATCAGCTCACTTC 59.640 44.000 0.00 0.00 35.59 3.01
1491 1535 5.268387 TCTCCTAGAGAAATCAGCTCACTT 58.732 41.667 0.00 0.00 35.59 3.16
1495 1539 6.581712 ACAAATCTCCTAGAGAAATCAGCTC 58.418 40.000 0.00 0.00 42.27 4.09
1497 1541 7.335422 TCAAACAAATCTCCTAGAGAAATCAGC 59.665 37.037 0.00 0.00 42.27 4.26
1512 1556 4.275936 CGGTCAAGTTCCTCAAACAAATCT 59.724 41.667 0.00 0.00 40.56 2.40
1518 1562 2.940410 TCAACGGTCAAGTTCCTCAAAC 59.060 45.455 0.00 0.00 38.21 2.93
1521 1565 1.760613 AGTCAACGGTCAAGTTCCTCA 59.239 47.619 0.00 0.00 30.96 3.86
1524 1568 1.137513 CGAGTCAACGGTCAAGTTCC 58.862 55.000 0.00 0.00 30.96 3.62
1542 1586 1.005347 AGTTCGAGTTTGCGTGTTTCG 60.005 47.619 0.00 0.00 43.12 3.46
1616 1660 2.986728 AGGCCCTCCAACTTCTTAAGAA 59.013 45.455 16.85 16.85 33.74 2.52
1640 1684 9.027129 TCTTCAAATAAACCTCGTAATCGTATG 57.973 33.333 0.00 0.00 38.33 2.39
1661 1705 2.373169 ACAGGATGCAACTTCCTCTTCA 59.627 45.455 4.28 0.00 41.78 3.02
1662 1706 3.064900 ACAGGATGCAACTTCCTCTTC 57.935 47.619 4.28 0.00 41.78 2.87
1672 1716 2.937519 TGTTGTGGTTACAGGATGCAA 58.062 42.857 0.00 0.00 42.53 4.08
1680 1724 4.447138 AGGGAGAAATGTTGTGGTTACA 57.553 40.909 0.00 0.00 34.31 2.41
1684 1728 4.546674 AGAAAAGGGAGAAATGTTGTGGT 58.453 39.130 0.00 0.00 0.00 4.16
1732 1776 5.467735 GCTCCTGTTGCAATTTTCTGATTTT 59.532 36.000 0.59 0.00 0.00 1.82
1759 1803 6.551385 CTGCTAATTGTTCCCTAATAGCAG 57.449 41.667 15.57 15.57 46.39 4.24
1813 1857 5.873164 TCTAATTCCTTCCGTTTGACTAAGC 59.127 40.000 0.00 0.00 0.00 3.09
1821 1865 5.143376 TCGTCTTCTAATTCCTTCCGTTT 57.857 39.130 0.00 0.00 0.00 3.60
1983 2028 9.677567 GCATTGACTTTTTGACTCAGTTTATAA 57.322 29.630 0.00 0.00 0.00 0.98
2170 2215 9.638239 ACATGACGCATAAATTTAGTCAAAAAT 57.362 25.926 17.63 4.41 43.72 1.82
2191 2236 2.509548 CCCTCTGTCCCCAAATACATGA 59.490 50.000 0.00 0.00 0.00 3.07
2242 2287 9.838339 CAAGAAATGGTACTCCTATAGAATGTT 57.162 33.333 0.00 0.00 34.23 2.71
2307 2352 6.599437 ACAAGTCACAAATGCGTACTTATTC 58.401 36.000 0.00 0.00 0.00 1.75
2308 2353 6.426937 AGACAAGTCACAAATGCGTACTTATT 59.573 34.615 2.72 0.00 0.00 1.40
2912 2959 4.147321 AGCATCCTGAGTGTGAAATTTGT 58.853 39.130 0.00 0.00 0.00 2.83
3139 3186 4.574674 ACCATTTCCAAGAGCAGATACA 57.425 40.909 0.00 0.00 0.00 2.29
3351 3428 5.334569 GCAAGTAAAAAGGCTCACGATACAA 60.335 40.000 0.00 0.00 0.00 2.41
3447 3524 7.118723 TCAAGCAGGGTATTGTTCTTCATTAT 58.881 34.615 0.00 0.00 0.00 1.28
3493 3573 2.201927 GGCGATTCAGGCCCATTTT 58.798 52.632 0.00 0.00 44.97 1.82
3597 3677 2.034179 AGACGTTTTTGCAGGCTAAACC 59.966 45.455 13.14 2.61 39.61 3.27
4005 4085 7.499321 TCGGTTCAGCTTTCAACTATTAAAA 57.501 32.000 0.00 0.00 0.00 1.52
4035 4115 3.569827 TCTGAACCCCAGAGGAACA 57.430 52.632 0.00 0.00 46.38 3.18
4070 4150 7.813645 ACTAGGACAAAAACATTCGGAATAAC 58.186 34.615 2.35 0.00 0.00 1.89
4354 4434 6.763610 GCTTAGGGTGGATATATATGTTCAGC 59.236 42.308 10.62 10.62 0.00 4.26
4374 4454 2.420022 AGCCAACGCACAATAAGCTTAG 59.580 45.455 12.54 1.71 37.52 2.18
4389 4469 0.100503 AGTGCGACACAAAAGCCAAC 59.899 50.000 11.58 0.00 36.74 3.77
4414 4494 2.428530 TCTGGTGTAGCAGTGCTAGATG 59.571 50.000 25.09 16.66 42.11 2.90
4528 4608 2.831685 ACGGAACATAGCAACACAGA 57.168 45.000 0.00 0.00 0.00 3.41
4890 4970 5.760253 ACTGTGATTACTTCAACAGACAAGG 59.240 40.000 8.54 0.00 37.15 3.61
5135 5224 1.876156 GGCAGATAATCGCAAGGAAGG 59.124 52.381 0.00 0.00 38.47 3.46
5281 5370 9.520515 AACAGAACAAACTCATGGTAGATTAAT 57.479 29.630 0.00 0.00 0.00 1.40
5338 5427 8.621532 TTTATGAGAACTAAGTGCTTCAATGT 57.378 30.769 0.00 0.00 0.00 2.71
5791 5885 2.760374 AGCTACTATCTCGGCATTTGC 58.240 47.619 0.00 0.00 41.14 3.68
5834 5928 6.998802 AGAGTGAAACAGTAATGCTTCTAGT 58.001 36.000 7.71 0.00 41.43 2.57
5837 5931 7.067494 ACAAAAGAGTGAAACAGTAATGCTTCT 59.933 33.333 7.71 0.00 41.43 2.85
5939 6033 3.321968 TCAGATTCCATATGTCCTCCACG 59.678 47.826 1.24 0.00 0.00 4.94
6011 6105 6.524734 TCACATTTTGGATCTAGATACGCAT 58.475 36.000 10.45 0.00 0.00 4.73
6073 6167 0.545071 TCATGGACTCAGCTGGACCA 60.545 55.000 21.45 21.45 35.09 4.02
6185 6362 4.870363 TCAGCCAACAAAAGCAGTTATTC 58.130 39.130 0.00 0.00 0.00 1.75
6197 6374 6.438186 TCCTCATATCATATCAGCCAACAA 57.562 37.500 0.00 0.00 0.00 2.83
6215 6392 4.183865 CACAAGTCATAGCGATTTCCTCA 58.816 43.478 0.00 0.00 0.00 3.86
6475 6668 0.392336 TTGCATGTTTGAAGTGCCCC 59.608 50.000 0.00 0.00 38.06 5.80
6696 7042 1.069090 AACAAGCTCGAGTTCGGCA 59.931 52.632 15.13 0.00 40.29 5.69
6698 7044 0.784778 GACAACAAGCTCGAGTTCGG 59.215 55.000 15.13 6.82 40.29 4.30
6713 7059 1.301716 GCGCAAGACAGAGGGACAA 60.302 57.895 0.30 0.00 43.02 3.18
6714 7060 2.159819 GAGCGCAAGACAGAGGGACA 62.160 60.000 11.47 0.00 43.02 4.02
6715 7061 1.446966 GAGCGCAAGACAGAGGGAC 60.447 63.158 11.47 0.00 43.02 4.46
6716 7062 2.650116 GGAGCGCAAGACAGAGGGA 61.650 63.158 11.47 0.00 43.02 4.20
6735 7101 1.002792 GGACAACGAACACAAGAAGGC 60.003 52.381 0.00 0.00 0.00 4.35
6744 7110 2.432874 TCTGAAAGAGGGACAACGAACA 59.567 45.455 0.00 0.00 38.67 3.18
6745 7111 3.107642 TCTGAAAGAGGGACAACGAAC 57.892 47.619 0.00 0.00 38.67 3.95
6798 7164 3.056328 GGCAAGGTTCACGAGGGC 61.056 66.667 0.00 0.00 0.00 5.19
6831 7197 1.262640 TAGAGGGACGCCAGGGAAAC 61.263 60.000 0.00 0.00 0.00 2.78
6885 7251 1.290324 CAGTGACCAGTGAGTCCCG 59.710 63.158 8.66 0.00 35.83 5.14
6933 7299 2.231478 TCAACTTCCTGGTGATCGAGAC 59.769 50.000 0.00 0.00 37.49 3.36
6955 7321 4.357947 GTCGGCTGTGGCACGAGA 62.358 66.667 13.77 6.60 40.02 4.04
6966 7332 3.386237 GTGGAGGCTCAGTCGGCT 61.386 66.667 17.69 0.00 43.13 5.52
6971 7337 1.069765 CGTTGTGTGGAGGCTCAGT 59.930 57.895 17.69 0.00 0.00 3.41
7057 7423 2.723010 CGTTTCAGCATCGAGTTTCAGC 60.723 50.000 0.00 0.00 0.00 4.26
7096 7463 1.070105 TTCAGCTACCGTGGCGTTT 59.930 52.632 0.69 0.00 34.52 3.60
7102 7469 1.071605 GAGCAAGTTCAGCTACCGTG 58.928 55.000 0.00 0.00 43.58 4.94
7103 7470 0.969894 AGAGCAAGTTCAGCTACCGT 59.030 50.000 0.00 0.00 43.58 4.83
7111 7478 2.309528 ACGTGTGAAGAGCAAGTTCA 57.690 45.000 0.00 0.00 0.00 3.18
7160 7527 0.870393 CGACAAATCTGCACTGCTGT 59.130 50.000 1.98 0.00 0.00 4.40
7161 7528 0.167470 CCGACAAATCTGCACTGCTG 59.833 55.000 1.98 1.75 0.00 4.41
7163 7530 0.110056 CACCGACAAATCTGCACTGC 60.110 55.000 0.00 0.00 0.00 4.40
7171 7538 1.451387 ATCGCCCCACCGACAAATC 60.451 57.895 0.00 0.00 40.40 2.17
7203 7570 1.703411 CACAACACCCATTTCCACCT 58.297 50.000 0.00 0.00 0.00 4.00
7233 7600 2.770048 CCCCTCCTCCAATCGGCT 60.770 66.667 0.00 0.00 0.00 5.52
7251 7618 3.379240 CATGATGTCCTGATCTGTCGTC 58.621 50.000 0.00 1.48 0.00 4.20
7255 7622 4.100653 CACTACCATGATGTCCTGATCTGT 59.899 45.833 0.00 0.00 0.00 3.41
7262 7629 1.134280 GCTGCACTACCATGATGTCCT 60.134 52.381 0.00 0.00 0.00 3.85
7265 7632 1.280133 ACAGCTGCACTACCATGATGT 59.720 47.619 15.27 0.00 0.00 3.06
7268 7635 0.036105 CCACAGCTGCACTACCATGA 60.036 55.000 15.27 0.00 0.00 3.07
7284 7651 2.579684 GATCCAGACACTCCCGCCAC 62.580 65.000 0.00 0.00 0.00 5.01
7286 7653 2.501610 GATCCAGACACTCCCGCC 59.498 66.667 0.00 0.00 0.00 6.13
7320 7687 2.438434 CAATTTCCCTCCCGCGCT 60.438 61.111 5.56 0.00 0.00 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.