Multiple sequence alignment - TraesCS7A01G259300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G259300 chr7A 100.000 2660 0 0 1 2660 251255130 251252471 0.000000e+00 4913.0
1 TraesCS7A01G259300 chr7A 77.426 474 77 14 1 452 128883863 128884328 3.400000e-64 255.0
2 TraesCS7A01G259300 chr7A 93.701 127 8 0 1811 1937 625610943 625611069 9.720000e-45 191.0
3 TraesCS7A01G259300 chr7A 85.185 81 7 4 1805 1883 85735868 85735791 7.890000e-11 78.7
4 TraesCS7A01G259300 chr7D 93.894 1392 71 7 375 1761 236011380 236009998 0.000000e+00 2087.0
5 TraesCS7A01G259300 chr7D 86.559 372 36 6 1 369 236014147 236013787 5.340000e-107 398.0
6 TraesCS7A01G259300 chr7D 78.540 452 84 9 6 452 43881939 43882382 4.330000e-73 285.0
7 TraesCS7A01G259300 chr7D 82.353 323 57 0 1 323 594990248 594989926 5.610000e-72 281.0
8 TraesCS7A01G259300 chr7B 91.653 1222 55 17 587 1761 212419646 212418425 0.000000e+00 1648.0
9 TraesCS7A01G259300 chr7B 81.292 449 74 7 7 451 705196783 705196341 3.260000e-94 355.0
10 TraesCS7A01G259300 chr2A 96.974 727 22 0 1934 2660 692033860 692034586 0.000000e+00 1221.0
11 TraesCS7A01G259300 chr2A 78.022 455 84 11 1 451 11034656 11034214 3.370000e-69 272.0
12 TraesCS7A01G259300 chr2A 95.726 117 5 0 1821 1937 589749772 589749888 3.500000e-44 189.0
13 TraesCS7A01G259300 chr5A 96.424 727 26 0 1934 2660 471714180 471714906 0.000000e+00 1199.0
14 TraesCS7A01G259300 chr5A 94.223 727 41 1 1934 2660 323914818 323915543 0.000000e+00 1109.0
15 TraesCS7A01G259300 chr5A 77.973 513 90 17 1172 1662 321328886 321328375 1.550000e-77 300.0
16 TraesCS7A01G259300 chr3A 95.736 727 31 0 1934 2660 472426090 472425364 0.000000e+00 1171.0
17 TraesCS7A01G259300 chr1A 95.323 727 33 1 1934 2660 284907186 284907911 0.000000e+00 1153.0
18 TraesCS7A01G259300 chr1A 95.082 122 6 0 1816 1937 574644804 574644925 2.700000e-45 193.0
19 TraesCS7A01G259300 chr1A 95.960 99 4 0 1839 1937 447163544 447163446 7.620000e-36 161.0
20 TraesCS7A01G259300 chr4A 95.048 727 35 1 1934 2660 70743358 70744083 0.000000e+00 1142.0
21 TraesCS7A01G259300 chr4A 93.948 727 44 0 1934 2660 83567555 83568281 0.000000e+00 1099.0
22 TraesCS7A01G259300 chr6A 94.498 727 37 2 1934 2660 524859043 524859766 0.000000e+00 1118.0
23 TraesCS7A01G259300 chr6A 87.308 717 76 9 978 1687 129340858 129341566 0.000000e+00 806.0
24 TraesCS7A01G259300 chrUn 94.223 727 42 0 1934 2660 81553976 81553250 0.000000e+00 1110.0
25 TraesCS7A01G259300 chr6D 87.029 717 78 9 978 1687 106079885 106080593 0.000000e+00 795.0
26 TraesCS7A01G259300 chr6D 82.637 455 74 5 1 451 344914838 344914385 5.340000e-107 398.0
27 TraesCS7A01G259300 chr6D 79.869 457 75 13 1 448 89736028 89736476 4.270000e-83 318.0
28 TraesCS7A01G259300 chr6B 83.391 873 96 25 851 1687 192926024 192926883 0.000000e+00 763.0
29 TraesCS7A01G259300 chr4B 81.015 453 80 6 3 452 4541611 4541162 3.260000e-94 355.0
30 TraesCS7A01G259300 chr5D 80.921 456 77 9 1 450 336043676 336044127 4.210000e-93 351.0
31 TraesCS7A01G259300 chr5D 78.599 514 87 17 1171 1662 233413624 233413112 4.270000e-83 318.0
32 TraesCS7A01G259300 chr5B 79.231 520 85 15 1165 1662 271665039 271665557 9.120000e-90 340.0
33 TraesCS7A01G259300 chr5B 89.344 122 13 0 1814 1935 81197736 81197857 1.280000e-33 154.0
34 TraesCS7A01G259300 chr5B 90.141 71 5 2 1804 1872 473864830 473864900 1.010000e-14 91.6
35 TraesCS7A01G259300 chr5B 92.063 63 5 0 1806 1868 9581970 9581908 3.650000e-14 89.8
36 TraesCS7A01G259300 chr2B 80.624 449 75 11 9 450 499554339 499553896 1.180000e-88 337.0
37 TraesCS7A01G259300 chr2B 76.978 278 52 9 177 448 638518973 638519244 5.930000e-32 148.0
38 TraesCS7A01G259300 chr2B 76.836 177 29 11 280 448 237976719 237976891 3.650000e-14 89.8
39 TraesCS7A01G259300 chr1D 79.515 454 78 7 1 451 457087731 457087290 2.570000e-80 309.0
40 TraesCS7A01G259300 chr1B 90.323 62 6 0 1807 1868 45744569 45744630 6.100000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G259300 chr7A 251252471 251255130 2659 True 4913.0 4913 100.0000 1 2660 1 chr7A.!!$R2 2659
1 TraesCS7A01G259300 chr7D 236009998 236014147 4149 True 1242.5 2087 90.2265 1 1761 2 chr7D.!!$R2 1760
2 TraesCS7A01G259300 chr7B 212418425 212419646 1221 True 1648.0 1648 91.6530 587 1761 1 chr7B.!!$R1 1174
3 TraesCS7A01G259300 chr2A 692033860 692034586 726 False 1221.0 1221 96.9740 1934 2660 1 chr2A.!!$F2 726
4 TraesCS7A01G259300 chr5A 471714180 471714906 726 False 1199.0 1199 96.4240 1934 2660 1 chr5A.!!$F2 726
5 TraesCS7A01G259300 chr5A 323914818 323915543 725 False 1109.0 1109 94.2230 1934 2660 1 chr5A.!!$F1 726
6 TraesCS7A01G259300 chr5A 321328375 321328886 511 True 300.0 300 77.9730 1172 1662 1 chr5A.!!$R1 490
7 TraesCS7A01G259300 chr3A 472425364 472426090 726 True 1171.0 1171 95.7360 1934 2660 1 chr3A.!!$R1 726
8 TraesCS7A01G259300 chr1A 284907186 284907911 725 False 1153.0 1153 95.3230 1934 2660 1 chr1A.!!$F1 726
9 TraesCS7A01G259300 chr4A 70743358 70744083 725 False 1142.0 1142 95.0480 1934 2660 1 chr4A.!!$F1 726
10 TraesCS7A01G259300 chr4A 83567555 83568281 726 False 1099.0 1099 93.9480 1934 2660 1 chr4A.!!$F2 726
11 TraesCS7A01G259300 chr6A 524859043 524859766 723 False 1118.0 1118 94.4980 1934 2660 1 chr6A.!!$F2 726
12 TraesCS7A01G259300 chr6A 129340858 129341566 708 False 806.0 806 87.3080 978 1687 1 chr6A.!!$F1 709
13 TraesCS7A01G259300 chrUn 81553250 81553976 726 True 1110.0 1110 94.2230 1934 2660 1 chrUn.!!$R1 726
14 TraesCS7A01G259300 chr6D 106079885 106080593 708 False 795.0 795 87.0290 978 1687 1 chr6D.!!$F2 709
15 TraesCS7A01G259300 chr6B 192926024 192926883 859 False 763.0 763 83.3910 851 1687 1 chr6B.!!$F1 836
16 TraesCS7A01G259300 chr5D 233413112 233413624 512 True 318.0 318 78.5990 1171 1662 1 chr5D.!!$R1 491
17 TraesCS7A01G259300 chr5B 271665039 271665557 518 False 340.0 340 79.2310 1165 1662 1 chr5B.!!$F2 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
618 3022 0.24746 CAGGGACATCGAGCAGAACA 59.753 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 4365 0.03759 TGGATGGGTTTGACGAAGGG 59.962 55.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.222038 TCAGTAGGAATAATGTCTCACACC 57.778 41.667 0.00 0.00 0.00 4.16
30 31 7.038302 TCAGTAGGAATAATGTCTCACACCTTT 60.038 37.037 0.00 0.00 0.00 3.11
39 40 2.027469 GTCTCACACCTTTTATCCCCGT 60.027 50.000 0.00 0.00 0.00 5.28
50 51 1.541310 TATCCCCGTCCCGATGATGC 61.541 60.000 0.00 0.00 0.00 3.91
78 79 2.737376 GTCGGAGGGCGTGTGAAC 60.737 66.667 0.00 0.00 0.00 3.18
113 114 1.672854 ATCTCGCGGGATTTGGTCGA 61.673 55.000 17.66 0.00 0.00 4.20
139 140 4.960938 TGGTCTTCGATGGATCTATTTGG 58.039 43.478 0.00 0.00 0.00 3.28
154 155 8.622948 GATCTATTTGGATCCGGTCTTTATTT 57.377 34.615 7.39 0.00 36.91 1.40
155 156 8.996651 ATCTATTTGGATCCGGTCTTTATTTT 57.003 30.769 7.39 0.00 0.00 1.82
165 166 7.114866 TCCGGTCTTTATTTTTCTTGGTTTT 57.885 32.000 0.00 0.00 0.00 2.43
173 174 9.553418 CTTTATTTTTCTTGGTTTTGGTGTTTG 57.447 29.630 0.00 0.00 0.00 2.93
184 185 2.886862 TGGTGTTTGCAGGTTTGATG 57.113 45.000 0.00 0.00 0.00 3.07
188 189 2.796593 GTGTTTGCAGGTTTGATGCTTC 59.203 45.455 0.00 0.00 44.17 3.86
196 197 4.191544 CAGGTTTGATGCTTCCGATCTAA 58.808 43.478 0.00 0.00 0.00 2.10
203 204 5.352284 TGATGCTTCCGATCTAAGACTTTC 58.648 41.667 8.44 0.00 0.00 2.62
212 213 5.683743 CCGATCTAAGACTTTCTTCATCGAC 59.316 44.000 21.07 2.12 44.18 4.20
213 214 5.394032 CGATCTAAGACTTTCTTCATCGACG 59.606 44.000 17.47 0.00 44.18 5.12
214 215 5.874895 TCTAAGACTTTCTTCATCGACGA 57.125 39.130 0.00 0.00 37.89 4.20
215 216 6.438259 TCTAAGACTTTCTTCATCGACGAT 57.562 37.500 4.05 4.05 37.89 3.73
216 217 6.258899 TCTAAGACTTTCTTCATCGACGATG 58.741 40.000 28.03 28.03 41.00 3.84
217 218 3.775202 AGACTTTCTTCATCGACGATGG 58.225 45.455 31.58 19.61 40.15 3.51
218 219 3.193691 AGACTTTCTTCATCGACGATGGT 59.806 43.478 31.58 21.99 40.15 3.55
219 220 3.926616 ACTTTCTTCATCGACGATGGTT 58.073 40.909 31.58 10.33 40.15 3.67
243 244 0.249238 CTCTGGTGCGCTGATCCTAC 60.249 60.000 9.73 0.00 0.00 3.18
245 246 2.279517 GGTGCGCTGATCCTACGG 60.280 66.667 9.73 0.00 0.00 4.02
249 250 2.728817 CGCTGATCCTACGGGGTC 59.271 66.667 0.00 0.00 42.91 4.46
254 255 1.614413 CTGATCCTACGGGGTCTTAGC 59.386 57.143 0.00 0.00 43.02 3.09
268 269 3.614616 GGTCTTAGCACGATGACTTTCAG 59.385 47.826 0.00 0.00 0.00 3.02
277 278 4.854291 CACGATGACTTTCAGACTGTCTAC 59.146 45.833 10.47 0.00 0.00 2.59
287 288 9.298250 ACTTTCAGACTGTCTACTACAATAAGA 57.702 33.333 10.47 0.00 37.74 2.10
294 295 7.773149 ACTGTCTACTACAATAAGATGTGTCC 58.227 38.462 0.00 0.00 37.74 4.02
300 301 2.501723 ACAATAAGATGTGTCCGGCTCT 59.498 45.455 0.00 0.00 30.82 4.09
310 311 2.598985 CCGGCTCTAGCGAGGGAT 60.599 66.667 0.00 0.00 43.26 3.85
311 312 2.647875 CGGCTCTAGCGAGGGATG 59.352 66.667 0.00 0.00 43.26 3.51
312 313 2.196925 CGGCTCTAGCGAGGGATGT 61.197 63.158 0.00 0.00 43.26 3.06
313 314 1.365633 GGCTCTAGCGAGGGATGTG 59.634 63.158 0.00 0.00 43.26 3.21
317 318 1.299468 CTAGCGAGGGATGTGCGAC 60.299 63.158 0.00 0.00 0.00 5.19
323 324 2.186903 GGGATGTGCGACGATGGT 59.813 61.111 0.00 0.00 0.00 3.55
332 335 1.671054 CGACGATGGTGGCACCTTT 60.671 57.895 34.69 23.14 39.58 3.11
341 344 2.910319 TGGTGGCACCTTTCAGTATAGT 59.090 45.455 34.69 0.00 39.58 2.12
344 347 4.081309 GGTGGCACCTTTCAGTATAGTGTA 60.081 45.833 29.22 0.00 34.73 2.90
353 356 8.537016 ACCTTTCAGTATAGTGTATGCTTGTAA 58.463 33.333 7.44 0.00 0.00 2.41
364 367 5.119279 GTGTATGCTTGTAATCATCGCTAGG 59.881 44.000 0.00 0.00 0.00 3.02
369 372 5.010617 TGCTTGTAATCATCGCTAGGTGATA 59.989 40.000 0.00 0.00 34.14 2.15
371 374 6.399639 TTGTAATCATCGCTAGGTGATACA 57.600 37.500 0.00 0.00 34.14 2.29
372 375 6.590234 TGTAATCATCGCTAGGTGATACAT 57.410 37.500 0.00 0.00 34.14 2.29
373 376 7.696992 TGTAATCATCGCTAGGTGATACATA 57.303 36.000 0.00 0.00 34.14 2.29
407 2811 9.936759 TTGTAATTTTTATTTTCCCTGATGTCC 57.063 29.630 0.00 0.00 0.00 4.02
414 2818 7.696992 TTATTTTCCCTGATGTCCTTTGTAC 57.303 36.000 0.00 0.00 0.00 2.90
428 2832 7.227873 TGTCCTTTGTACTACCATGATTGAAA 58.772 34.615 0.00 0.00 0.00 2.69
525 2929 2.455674 TTTGTCTCACATGTCGGAGG 57.544 50.000 12.00 0.00 0.00 4.30
537 2941 3.697747 CGGAGGCAACACGGGGTA 61.698 66.667 0.00 0.00 41.41 3.69
618 3022 0.247460 CAGGGACATCGAGCAGAACA 59.753 55.000 0.00 0.00 0.00 3.18
830 3248 3.561310 TGAACAATATGCAGCCGAGAATC 59.439 43.478 0.00 0.00 0.00 2.52
844 3262 4.926238 GCCGAGAATCCATCACAATACTAG 59.074 45.833 0.00 0.00 0.00 2.57
917 3344 7.156673 ACAAGTCCAATTCATTTCCAATTCTG 58.843 34.615 0.00 0.00 0.00 3.02
969 3397 2.159366 ACTTTCCACTACAGCTCGATCG 60.159 50.000 9.36 9.36 0.00 3.69
1324 3798 4.778143 CCAACCCGGCCTCCTTCG 62.778 72.222 0.00 0.00 0.00 3.79
1669 4146 0.179073 TAAGCTCTGATCGGCTTGGC 60.179 55.000 22.15 12.82 46.45 4.52
1673 4155 0.809241 CTCTGATCGGCTTGGCTGTC 60.809 60.000 0.00 0.00 36.18 3.51
1690 4172 3.669557 GCTGTCGTTCGTTTTATGGCATT 60.670 43.478 4.78 0.00 0.00 3.56
1706 4195 0.178767 CATTGCCAGGGAGATCGTGA 59.821 55.000 0.00 0.00 33.39 4.35
1761 4250 6.183810 TCAGCATGATGATACTTGATCCTT 57.816 37.500 10.16 0.00 42.56 3.36
1762 4251 6.598503 TCAGCATGATGATACTTGATCCTTT 58.401 36.000 10.16 0.00 42.56 3.11
1763 4252 6.485648 TCAGCATGATGATACTTGATCCTTTG 59.514 38.462 10.16 0.00 42.56 2.77
1764 4253 5.241064 AGCATGATGATACTTGATCCTTTGC 59.759 40.000 0.00 0.00 33.07 3.68
1765 4254 5.241064 GCATGATGATACTTGATCCTTTGCT 59.759 40.000 0.00 0.00 33.07 3.91
1766 4255 6.669278 CATGATGATACTTGATCCTTTGCTG 58.331 40.000 0.00 0.00 33.07 4.41
1767 4256 5.748402 TGATGATACTTGATCCTTTGCTGT 58.252 37.500 0.00 0.00 33.07 4.40
1768 4257 6.182627 TGATGATACTTGATCCTTTGCTGTT 58.817 36.000 0.00 0.00 33.07 3.16
1769 4258 7.337938 TGATGATACTTGATCCTTTGCTGTTA 58.662 34.615 0.00 0.00 33.07 2.41
1770 4259 7.994911 TGATGATACTTGATCCTTTGCTGTTAT 59.005 33.333 0.00 0.00 33.07 1.89
1771 4260 7.558161 TGATACTTGATCCTTTGCTGTTATG 57.442 36.000 0.00 0.00 33.07 1.90
1772 4261 7.112122 TGATACTTGATCCTTTGCTGTTATGT 58.888 34.615 0.00 0.00 33.07 2.29
1773 4262 7.611467 TGATACTTGATCCTTTGCTGTTATGTT 59.389 33.333 0.00 0.00 33.07 2.71
1774 4263 6.655078 ACTTGATCCTTTGCTGTTATGTTT 57.345 33.333 0.00 0.00 0.00 2.83
1775 4264 7.054491 ACTTGATCCTTTGCTGTTATGTTTT 57.946 32.000 0.00 0.00 0.00 2.43
1776 4265 6.925165 ACTTGATCCTTTGCTGTTATGTTTTG 59.075 34.615 0.00 0.00 0.00 2.44
1777 4266 6.403866 TGATCCTTTGCTGTTATGTTTTGT 57.596 33.333 0.00 0.00 0.00 2.83
1778 4267 6.446318 TGATCCTTTGCTGTTATGTTTTGTC 58.554 36.000 0.00 0.00 0.00 3.18
1779 4268 6.265196 TGATCCTTTGCTGTTATGTTTTGTCT 59.735 34.615 0.00 0.00 0.00 3.41
1780 4269 6.072112 TCCTTTGCTGTTATGTTTTGTCTC 57.928 37.500 0.00 0.00 0.00 3.36
1781 4270 5.827797 TCCTTTGCTGTTATGTTTTGTCTCT 59.172 36.000 0.00 0.00 0.00 3.10
1782 4271 6.321181 TCCTTTGCTGTTATGTTTTGTCTCTT 59.679 34.615 0.00 0.00 0.00 2.85
1783 4272 6.638468 CCTTTGCTGTTATGTTTTGTCTCTTC 59.362 38.462 0.00 0.00 0.00 2.87
1784 4273 5.342806 TGCTGTTATGTTTTGTCTCTTCG 57.657 39.130 0.00 0.00 0.00 3.79
1785 4274 4.814234 TGCTGTTATGTTTTGTCTCTTCGT 59.186 37.500 0.00 0.00 0.00 3.85
1786 4275 5.140177 GCTGTTATGTTTTGTCTCTTCGTG 58.860 41.667 0.00 0.00 0.00 4.35
1787 4276 5.277345 GCTGTTATGTTTTGTCTCTTCGTGT 60.277 40.000 0.00 0.00 0.00 4.49
1788 4277 6.073980 GCTGTTATGTTTTGTCTCTTCGTGTA 60.074 38.462 0.00 0.00 0.00 2.90
1789 4278 7.402811 TGTTATGTTTTGTCTCTTCGTGTAG 57.597 36.000 0.00 0.00 0.00 2.74
1790 4279 7.204604 TGTTATGTTTTGTCTCTTCGTGTAGA 58.795 34.615 0.00 0.00 0.00 2.59
1791 4280 7.381408 TGTTATGTTTTGTCTCTTCGTGTAGAG 59.619 37.037 0.00 0.00 42.46 2.43
1792 4281 5.509716 TGTTTTGTCTCTTCGTGTAGAGA 57.490 39.130 9.51 9.51 46.35 3.10
1802 4291 4.872664 CTTCGTGTAGAGAAGAAACAGGT 58.127 43.478 0.05 0.00 45.78 4.00
1803 4292 4.931661 TCGTGTAGAGAAGAAACAGGTT 57.068 40.909 0.00 0.00 32.39 3.50
1804 4293 5.272283 TCGTGTAGAGAAGAAACAGGTTT 57.728 39.130 0.00 0.00 35.14 3.27
1805 4294 5.667466 TCGTGTAGAGAAGAAACAGGTTTT 58.333 37.500 0.00 0.00 32.11 2.43
1806 4295 6.808829 TCGTGTAGAGAAGAAACAGGTTTTA 58.191 36.000 0.00 0.00 32.11 1.52
1807 4296 7.439381 TCGTGTAGAGAAGAAACAGGTTTTAT 58.561 34.615 0.00 0.00 32.11 1.40
1808 4297 7.929785 TCGTGTAGAGAAGAAACAGGTTTTATT 59.070 33.333 0.00 0.00 32.11 1.40
1809 4298 9.199982 CGTGTAGAGAAGAAACAGGTTTTATTA 57.800 33.333 0.00 0.00 32.11 0.98
1831 4320 8.792830 ATTATAGGACATATGTATGTGGCAAC 57.207 34.615 8.71 0.00 46.20 4.17
1832 4321 3.820557 AGGACATATGTATGTGGCAACC 58.179 45.455 8.71 2.30 46.20 3.77
1833 4322 2.548057 GGACATATGTATGTGGCAACCG 59.452 50.000 8.71 0.00 46.20 4.44
1834 4323 3.202906 GACATATGTATGTGGCAACCGT 58.797 45.455 8.71 0.00 46.20 4.83
1835 4324 2.942376 ACATATGTATGTGGCAACCGTG 59.058 45.455 6.56 0.00 44.66 4.94
1836 4325 2.772077 TATGTATGTGGCAACCGTGT 57.228 45.000 0.00 0.00 0.00 4.49
1837 4326 1.164411 ATGTATGTGGCAACCGTGTG 58.836 50.000 0.00 0.00 0.00 3.82
1838 4327 0.886938 TGTATGTGGCAACCGTGTGG 60.887 55.000 0.00 0.00 42.84 4.17
1839 4328 1.969064 TATGTGGCAACCGTGTGGC 60.969 57.895 0.00 2.55 44.09 5.01
1843 4332 2.672996 GGCAACCGTGTGGCAGAT 60.673 61.111 5.87 0.00 43.33 2.90
1844 4333 2.268076 GGCAACCGTGTGGCAGATT 61.268 57.895 5.87 0.00 43.33 2.40
1845 4334 0.958382 GGCAACCGTGTGGCAGATTA 60.958 55.000 5.87 0.00 43.33 1.75
1846 4335 0.168128 GCAACCGTGTGGCAGATTAC 59.832 55.000 0.00 0.00 39.70 1.89
1847 4336 1.518325 CAACCGTGTGGCAGATTACA 58.482 50.000 0.00 0.00 39.70 2.41
1848 4337 1.876799 CAACCGTGTGGCAGATTACAA 59.123 47.619 0.00 0.00 39.70 2.41
1849 4338 2.264005 ACCGTGTGGCAGATTACAAA 57.736 45.000 0.00 0.00 39.70 2.83
1850 4339 2.577700 ACCGTGTGGCAGATTACAAAA 58.422 42.857 0.00 0.00 39.70 2.44
1851 4340 2.292292 ACCGTGTGGCAGATTACAAAAC 59.708 45.455 0.00 0.00 39.70 2.43
1852 4341 2.552315 CCGTGTGGCAGATTACAAAACT 59.448 45.455 0.00 0.00 0.00 2.66
1853 4342 3.554524 CGTGTGGCAGATTACAAAACTG 58.445 45.455 0.00 0.00 35.14 3.16
1860 4349 3.554524 CAGATTACAAAACTGCCACACG 58.445 45.455 0.00 0.00 0.00 4.49
1861 4350 3.249799 CAGATTACAAAACTGCCACACGA 59.750 43.478 0.00 0.00 0.00 4.35
1862 4351 4.072131 AGATTACAAAACTGCCACACGAT 58.928 39.130 0.00 0.00 0.00 3.73
1863 4352 3.889196 TTACAAAACTGCCACACGATC 57.111 42.857 0.00 0.00 0.00 3.69
1864 4353 1.967319 ACAAAACTGCCACACGATCT 58.033 45.000 0.00 0.00 0.00 2.75
1865 4354 1.873591 ACAAAACTGCCACACGATCTC 59.126 47.619 0.00 0.00 0.00 2.75
1866 4355 1.872952 CAAAACTGCCACACGATCTCA 59.127 47.619 0.00 0.00 0.00 3.27
1867 4356 2.479566 AAACTGCCACACGATCTCAT 57.520 45.000 0.00 0.00 0.00 2.90
1868 4357 3.610040 AAACTGCCACACGATCTCATA 57.390 42.857 0.00 0.00 0.00 2.15
1869 4358 3.610040 AACTGCCACACGATCTCATAA 57.390 42.857 0.00 0.00 0.00 1.90
1870 4359 3.610040 ACTGCCACACGATCTCATAAA 57.390 42.857 0.00 0.00 0.00 1.40
1871 4360 3.525537 ACTGCCACACGATCTCATAAAG 58.474 45.455 0.00 0.00 0.00 1.85
1872 4361 2.279741 TGCCACACGATCTCATAAAGC 58.720 47.619 0.00 0.00 0.00 3.51
1873 4362 1.258982 GCCACACGATCTCATAAAGCG 59.741 52.381 0.00 0.00 0.00 4.68
1874 4363 2.809446 CCACACGATCTCATAAAGCGA 58.191 47.619 0.00 0.00 0.00 4.93
1875 4364 3.384668 CCACACGATCTCATAAAGCGAT 58.615 45.455 0.00 0.00 0.00 4.58
1876 4365 3.426859 CCACACGATCTCATAAAGCGATC 59.573 47.826 0.00 0.00 35.57 3.69
1877 4366 3.426859 CACACGATCTCATAAAGCGATCC 59.573 47.826 0.00 0.00 35.51 3.36
1878 4367 2.989840 CACGATCTCATAAAGCGATCCC 59.010 50.000 0.00 0.00 35.51 3.85
1879 4368 2.894126 ACGATCTCATAAAGCGATCCCT 59.106 45.455 0.00 0.00 35.51 4.20
1880 4369 3.322254 ACGATCTCATAAAGCGATCCCTT 59.678 43.478 0.00 0.00 35.51 3.95
1881 4370 3.923461 CGATCTCATAAAGCGATCCCTTC 59.077 47.826 0.00 0.00 35.51 3.46
1890 4379 2.763651 CGATCCCTTCGTCAAACCC 58.236 57.895 0.00 0.00 43.01 4.11
1891 4380 0.036765 CGATCCCTTCGTCAAACCCA 60.037 55.000 0.00 0.00 43.01 4.51
1892 4381 1.406887 CGATCCCTTCGTCAAACCCAT 60.407 52.381 0.00 0.00 43.01 4.00
1893 4382 2.289565 GATCCCTTCGTCAAACCCATC 58.710 52.381 0.00 0.00 0.00 3.51
1894 4383 0.326927 TCCCTTCGTCAAACCCATCC 59.673 55.000 0.00 0.00 0.00 3.51
1895 4384 0.037590 CCCTTCGTCAAACCCATCCA 59.962 55.000 0.00 0.00 0.00 3.41
1896 4385 1.165270 CCTTCGTCAAACCCATCCAC 58.835 55.000 0.00 0.00 0.00 4.02
1897 4386 1.165270 CTTCGTCAAACCCATCCACC 58.835 55.000 0.00 0.00 0.00 4.61
1898 4387 0.250989 TTCGTCAAACCCATCCACCC 60.251 55.000 0.00 0.00 0.00 4.61
1899 4388 1.074072 CGTCAAACCCATCCACCCA 59.926 57.895 0.00 0.00 0.00 4.51
1900 4389 0.960364 CGTCAAACCCATCCACCCAG 60.960 60.000 0.00 0.00 0.00 4.45
1901 4390 0.611896 GTCAAACCCATCCACCCAGG 60.612 60.000 0.00 0.00 39.47 4.45
1902 4391 1.984026 CAAACCCATCCACCCAGGC 60.984 63.158 0.00 0.00 37.29 4.85
1903 4392 2.477893 AAACCCATCCACCCAGGCA 61.478 57.895 0.00 0.00 37.29 4.75
1904 4393 2.730129 AAACCCATCCACCCAGGCAC 62.730 60.000 0.00 0.00 37.29 5.01
1905 4394 4.447342 CCCATCCACCCAGGCACC 62.447 72.222 0.00 0.00 37.29 5.01
1906 4395 4.447342 CCATCCACCCAGGCACCC 62.447 72.222 0.00 0.00 37.29 4.61
1907 4396 3.660571 CATCCACCCAGGCACCCA 61.661 66.667 0.00 0.00 37.29 4.51
1908 4397 3.661648 ATCCACCCAGGCACCCAC 61.662 66.667 0.00 0.00 37.29 4.61
1911 4400 4.033776 CACCCAGGCACCCACGAT 62.034 66.667 0.00 0.00 0.00 3.73
1912 4401 3.717294 ACCCAGGCACCCACGATC 61.717 66.667 0.00 0.00 0.00 3.69
1913 4402 4.489771 CCCAGGCACCCACGATCC 62.490 72.222 0.00 0.00 0.00 3.36
1914 4403 4.489771 CCAGGCACCCACGATCCC 62.490 72.222 0.00 0.00 0.00 3.85
1915 4404 4.489771 CAGGCACCCACGATCCCC 62.490 72.222 0.00 0.00 0.00 4.81
1917 4406 4.796495 GGCACCCACGATCCCCAC 62.796 72.222 0.00 0.00 0.00 4.61
1918 4407 4.796495 GCACCCACGATCCCCACC 62.796 72.222 0.00 0.00 0.00 4.61
1919 4408 3.009115 CACCCACGATCCCCACCT 61.009 66.667 0.00 0.00 0.00 4.00
1920 4409 1.687840 CACCCACGATCCCCACCTA 60.688 63.158 0.00 0.00 0.00 3.08
1921 4410 1.688187 ACCCACGATCCCCACCTAC 60.688 63.158 0.00 0.00 0.00 3.18
1922 4411 2.440817 CCCACGATCCCCACCTACC 61.441 68.421 0.00 0.00 0.00 3.18
1923 4412 1.382695 CCACGATCCCCACCTACCT 60.383 63.158 0.00 0.00 0.00 3.08
1924 4413 0.105862 CCACGATCCCCACCTACCTA 60.106 60.000 0.00 0.00 0.00 3.08
1925 4414 1.482553 CCACGATCCCCACCTACCTAT 60.483 57.143 0.00 0.00 0.00 2.57
1926 4415 1.893801 CACGATCCCCACCTACCTATC 59.106 57.143 0.00 0.00 0.00 2.08
1927 4416 1.174783 CGATCCCCACCTACCTATCG 58.825 60.000 0.00 0.00 0.00 2.92
1928 4417 0.896226 GATCCCCACCTACCTATCGC 59.104 60.000 0.00 0.00 0.00 4.58
1929 4418 0.898789 ATCCCCACCTACCTATCGCG 60.899 60.000 0.00 0.00 0.00 5.87
1930 4419 1.831286 CCCCACCTACCTATCGCGT 60.831 63.158 5.77 0.00 0.00 6.01
1931 4420 1.397390 CCCCACCTACCTATCGCGTT 61.397 60.000 5.77 0.00 0.00 4.84
1932 4421 0.249322 CCCACCTACCTATCGCGTTG 60.249 60.000 5.77 0.00 0.00 4.10
2022 4511 1.061711 GCGTAGACTAAGCGAAGACGA 59.938 52.381 4.61 0.00 42.66 4.20
2111 4600 4.725280 CACGATGCATTTGAAGATAACGTG 59.275 41.667 13.43 13.43 40.42 4.49
2178 4667 5.104360 ACGAATATGCCAGATAGCCCATAAT 60.104 40.000 0.00 0.00 0.00 1.28
2250 4739 2.223947 TGACAAAGAAGACACTAGCGCA 60.224 45.455 11.47 0.00 0.00 6.09
2535 5026 4.440525 CCGCGGGTAAGTTCTCTGTATAAA 60.441 45.833 20.10 0.00 0.00 1.40
2556 5047 5.397142 AAGAATTGACAGAGAATTTGCCC 57.603 39.130 0.00 0.00 0.00 5.36
2621 5112 1.260561 GCGTACATCCGCGATCAAATT 59.739 47.619 8.23 0.00 44.69 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.600062 GGGGATAAAAGGTGTGAGACATT 58.400 43.478 0.00 0.00 0.00 2.71
16 17 3.370527 CGGGGATAAAAGGTGTGAGACAT 60.371 47.826 0.00 0.00 0.00 3.06
17 18 2.027561 CGGGGATAAAAGGTGTGAGACA 60.028 50.000 0.00 0.00 0.00 3.41
39 40 1.660355 GCTAGACGCATCATCGGGA 59.340 57.895 0.00 0.00 38.92 5.14
71 72 0.526954 ACGGAGACACACGTTCACAC 60.527 55.000 0.00 0.00 40.99 3.82
76 77 0.877071 ATACGACGGAGACACACGTT 59.123 50.000 0.00 0.00 44.24 3.99
78 79 0.725686 AGATACGACGGAGACACACG 59.274 55.000 0.00 0.00 0.00 4.49
113 114 2.045524 AGATCCATCGAAGACCAGCAT 58.954 47.619 0.00 0.00 42.51 3.79
139 140 6.510879 ACCAAGAAAAATAAAGACCGGATC 57.489 37.500 9.46 1.42 0.00 3.36
154 155 3.999663 CTGCAAACACCAAAACCAAGAAA 59.000 39.130 0.00 0.00 0.00 2.52
155 156 3.594134 CTGCAAACACCAAAACCAAGAA 58.406 40.909 0.00 0.00 0.00 2.52
165 166 1.202510 GCATCAAACCTGCAAACACCA 60.203 47.619 0.00 0.00 39.46 4.17
173 174 1.064654 GATCGGAAGCATCAAACCTGC 59.935 52.381 0.00 0.00 39.97 4.85
184 185 5.411781 TGAAGAAAGTCTTAGATCGGAAGC 58.588 41.667 5.74 2.62 36.73 3.86
188 189 5.683743 GTCGATGAAGAAAGTCTTAGATCGG 59.316 44.000 20.68 10.42 42.82 4.18
196 197 3.193691 ACCATCGTCGATGAAGAAAGTCT 59.806 43.478 31.82 1.35 42.09 3.24
203 204 1.325640 CAGCAACCATCGTCGATGAAG 59.674 52.381 31.82 21.67 42.09 3.02
212 213 1.376424 ACCAGAGCAGCAACCATCG 60.376 57.895 0.00 0.00 0.00 3.84
213 214 1.930908 GCACCAGAGCAGCAACCATC 61.931 60.000 0.00 0.00 0.00 3.51
214 215 1.975407 GCACCAGAGCAGCAACCAT 60.975 57.895 0.00 0.00 0.00 3.55
215 216 2.595463 GCACCAGAGCAGCAACCA 60.595 61.111 0.00 0.00 0.00 3.67
216 217 3.730761 CGCACCAGAGCAGCAACC 61.731 66.667 0.00 0.00 0.00 3.77
217 218 4.395583 GCGCACCAGAGCAGCAAC 62.396 66.667 0.30 0.00 40.58 4.17
218 219 4.631247 AGCGCACCAGAGCAGCAA 62.631 61.111 11.47 0.00 43.61 3.91
243 244 0.527817 GTCATCGTGCTAAGACCCCG 60.528 60.000 0.00 0.00 0.00 5.73
245 246 2.674796 AAGTCATCGTGCTAAGACCC 57.325 50.000 0.00 0.00 0.00 4.46
249 250 4.325741 CAGTCTGAAAGTCATCGTGCTAAG 59.674 45.833 0.00 0.00 33.76 2.18
254 255 3.906998 AGACAGTCTGAAAGTCATCGTG 58.093 45.455 6.91 0.00 34.80 4.35
268 269 7.916450 GGACACATCTTATTGTAGTAGACAGTC 59.084 40.741 0.00 0.00 39.88 3.51
277 278 4.051922 GAGCCGGACACATCTTATTGTAG 58.948 47.826 5.05 0.00 0.00 2.74
287 288 1.729470 CTCGCTAGAGCCGGACACAT 61.729 60.000 5.05 0.00 37.73 3.21
289 290 2.409651 CTCGCTAGAGCCGGACAC 59.590 66.667 5.05 0.00 37.73 3.67
294 295 2.196925 ACATCCCTCGCTAGAGCCG 61.197 63.158 0.00 0.00 43.05 5.52
300 301 2.805546 GTCGCACATCCCTCGCTA 59.194 61.111 0.00 0.00 0.00 4.26
310 311 4.306967 TGCCACCATCGTCGCACA 62.307 61.111 0.00 0.00 30.54 4.57
313 314 4.760047 AGGTGCCACCATCGTCGC 62.760 66.667 17.80 0.00 41.95 5.19
317 318 0.606401 ACTGAAAGGTGCCACCATCG 60.606 55.000 17.80 11.95 41.95 3.84
323 324 5.670485 CATACACTATACTGAAAGGTGCCA 58.330 41.667 0.00 0.00 39.30 4.92
332 335 9.914131 GATGATTACAAGCATACACTATACTGA 57.086 33.333 0.00 0.00 34.76 3.41
341 344 5.221441 ACCTAGCGATGATTACAAGCATACA 60.221 40.000 0.00 0.00 34.76 2.29
344 347 4.060900 CACCTAGCGATGATTACAAGCAT 58.939 43.478 0.00 0.00 37.81 3.79
353 356 5.358442 GGTCTATGTATCACCTAGCGATGAT 59.642 44.000 7.33 7.33 38.99 2.45
364 367 8.732746 AAATTACAACCAGGTCTATGTATCAC 57.267 34.615 3.82 0.00 0.00 3.06
373 376 8.372459 GGGAAAATAAAAATTACAACCAGGTCT 58.628 33.333 0.00 0.00 0.00 3.85
395 2799 4.224370 GGTAGTACAAAGGACATCAGGGAA 59.776 45.833 2.06 0.00 0.00 3.97
396 2800 3.773119 GGTAGTACAAAGGACATCAGGGA 59.227 47.826 2.06 0.00 0.00 4.20
397 2801 3.517901 TGGTAGTACAAAGGACATCAGGG 59.482 47.826 2.06 0.00 0.00 4.45
398 2802 4.819105 TGGTAGTACAAAGGACATCAGG 57.181 45.455 2.06 0.00 0.00 3.86
428 2832 9.512588 ACATGAGAAACTTTCAGTCTATTCATT 57.487 29.630 0.00 0.00 0.00 2.57
464 2868 9.930158 AGGGAACTATATAAGGCATGTTTTTAA 57.070 29.630 0.00 0.00 40.61 1.52
484 2888 9.674068 ACAAATCTATCTTCTTTCTTAGGGAAC 57.326 33.333 0.00 0.00 33.13 3.62
485 2889 9.892130 GACAAATCTATCTTCTTTCTTAGGGAA 57.108 33.333 0.00 0.00 0.00 3.97
486 2890 9.273137 AGACAAATCTATCTTCTTTCTTAGGGA 57.727 33.333 0.00 0.00 31.46 4.20
525 2929 2.600475 CGTGTGTACCCCGTGTTGC 61.600 63.158 0.00 0.00 0.00 4.17
537 2941 2.125472 TTGTGACGTGCCGTGTGT 60.125 55.556 4.94 0.00 41.37 3.72
618 3022 2.390225 ATAGGCTCCTTCGTCCTCAT 57.610 50.000 0.00 0.00 0.00 2.90
775 3193 1.434555 TCATAAACTGGGCAACGACG 58.565 50.000 0.00 0.00 37.60 5.12
778 3196 4.637483 ATCATTCATAAACTGGGCAACG 57.363 40.909 0.00 0.00 37.60 4.10
817 3235 0.462581 GTGATGGATTCTCGGCTGCA 60.463 55.000 0.50 0.00 0.00 4.41
830 3248 5.791336 TCCAGCTACTAGTATTGTGATGG 57.209 43.478 14.81 14.81 0.00 3.51
844 3262 2.019249 TGAAGCAATGCATCCAGCTAC 58.981 47.619 18.01 1.74 45.94 3.58
917 3344 4.361420 GACGGAGAAGCTATAACTTGGAC 58.639 47.826 0.00 0.00 0.00 4.02
1266 3740 1.283793 CAGCAGCGTGAAGTTTGGG 59.716 57.895 0.00 0.00 0.00 4.12
1544 4021 0.878523 CTTGAACACGCCCAAGACGA 60.879 55.000 0.00 0.00 41.56 4.20
1669 4146 3.740044 ATGCCATAAAACGAACGACAG 57.260 42.857 0.14 0.00 0.00 3.51
1690 4172 0.687427 TGATCACGATCTCCCTGGCA 60.687 55.000 8.43 0.00 38.60 4.92
1701 4190 2.492088 ACTCGAGAACCATTGATCACGA 59.508 45.455 21.68 0.00 36.55 4.35
1706 4195 9.265901 CATATAAGAAACTCGAGAACCATTGAT 57.734 33.333 21.68 5.22 0.00 2.57
1761 4250 5.295787 ACGAAGAGACAAAACATAACAGCAA 59.704 36.000 0.00 0.00 0.00 3.91
1762 4251 4.814234 ACGAAGAGACAAAACATAACAGCA 59.186 37.500 0.00 0.00 0.00 4.41
1763 4252 5.140177 CACGAAGAGACAAAACATAACAGC 58.860 41.667 0.00 0.00 0.00 4.40
1764 4253 6.287107 ACACGAAGAGACAAAACATAACAG 57.713 37.500 0.00 0.00 0.00 3.16
1765 4254 7.204604 TCTACACGAAGAGACAAAACATAACA 58.795 34.615 0.00 0.00 0.00 2.41
1766 4255 7.594015 TCTCTACACGAAGAGACAAAACATAAC 59.406 37.037 11.18 0.00 45.54 1.89
1767 4256 7.654568 TCTCTACACGAAGAGACAAAACATAA 58.345 34.615 11.18 0.00 45.54 1.90
1768 4257 7.210718 TCTCTACACGAAGAGACAAAACATA 57.789 36.000 11.18 0.00 45.54 2.29
1769 4258 6.085555 TCTCTACACGAAGAGACAAAACAT 57.914 37.500 11.18 0.00 45.54 2.71
1770 4259 5.509716 TCTCTACACGAAGAGACAAAACA 57.490 39.130 11.18 0.00 45.54 2.83
1778 4267 5.157781 CCTGTTTCTTCTCTACACGAAGAG 58.842 45.833 0.00 0.00 45.26 2.85
1779 4268 4.583489 ACCTGTTTCTTCTCTACACGAAGA 59.417 41.667 0.00 0.00 43.61 2.87
1780 4269 4.872664 ACCTGTTTCTTCTCTACACGAAG 58.127 43.478 0.00 0.00 39.32 3.79
1781 4270 4.931661 ACCTGTTTCTTCTCTACACGAA 57.068 40.909 0.00 0.00 0.00 3.85
1782 4271 4.931661 AACCTGTTTCTTCTCTACACGA 57.068 40.909 0.00 0.00 0.00 4.35
1783 4272 5.986004 AAAACCTGTTTCTTCTCTACACG 57.014 39.130 0.00 0.00 31.45 4.49
1805 4294 9.884636 GTTGCCACATACATATGTCCTATAATA 57.115 33.333 12.68 0.00 44.57 0.98
1806 4295 7.829211 GGTTGCCACATACATATGTCCTATAAT 59.171 37.037 12.68 0.00 44.57 1.28
1807 4296 7.165485 GGTTGCCACATACATATGTCCTATAA 58.835 38.462 12.68 0.00 44.57 0.98
1808 4297 6.573485 CGGTTGCCACATACATATGTCCTATA 60.573 42.308 12.68 0.00 44.57 1.31
1809 4298 5.560724 GGTTGCCACATACATATGTCCTAT 58.439 41.667 12.68 0.00 44.57 2.57
1810 4299 4.502431 CGGTTGCCACATACATATGTCCTA 60.502 45.833 12.68 0.00 44.57 2.94
1811 4300 3.744214 CGGTTGCCACATACATATGTCCT 60.744 47.826 12.68 0.00 44.57 3.85
1812 4301 2.548057 CGGTTGCCACATACATATGTCC 59.452 50.000 12.68 3.00 44.57 4.02
1813 4302 3.002246 CACGGTTGCCACATACATATGTC 59.998 47.826 12.68 0.00 44.57 3.06
1815 4304 2.942376 ACACGGTTGCCACATACATATG 59.058 45.455 0.00 0.00 39.55 1.78
1816 4305 2.942376 CACACGGTTGCCACATACATAT 59.058 45.455 0.00 0.00 0.00 1.78
1817 4306 2.351455 CACACGGTTGCCACATACATA 58.649 47.619 0.00 0.00 0.00 2.29
1818 4307 1.164411 CACACGGTTGCCACATACAT 58.836 50.000 0.00 0.00 0.00 2.29
1819 4308 0.886938 CCACACGGTTGCCACATACA 60.887 55.000 0.00 0.00 0.00 2.29
1820 4309 1.873165 CCACACGGTTGCCACATAC 59.127 57.895 0.00 0.00 0.00 2.39
1821 4310 1.969064 GCCACACGGTTGCCACATA 60.969 57.895 0.00 0.00 33.28 2.29
1822 4311 3.294493 GCCACACGGTTGCCACAT 61.294 61.111 0.00 0.00 33.28 3.21
1823 4312 4.803908 TGCCACACGGTTGCCACA 62.804 61.111 0.00 0.00 33.28 4.17
1824 4313 3.964875 CTGCCACACGGTTGCCAC 61.965 66.667 0.00 0.00 33.28 5.01
1825 4314 2.974692 AATCTGCCACACGGTTGCCA 62.975 55.000 0.00 0.00 33.28 4.92
1826 4315 0.958382 TAATCTGCCACACGGTTGCC 60.958 55.000 0.00 0.00 33.28 4.52
1827 4316 0.168128 GTAATCTGCCACACGGTTGC 59.832 55.000 0.00 0.00 33.28 4.17
1828 4317 1.518325 TGTAATCTGCCACACGGTTG 58.482 50.000 0.00 0.00 33.28 3.77
1829 4318 2.264005 TTGTAATCTGCCACACGGTT 57.736 45.000 0.00 0.00 33.28 4.44
1830 4319 2.264005 TTTGTAATCTGCCACACGGT 57.736 45.000 0.00 0.00 33.28 4.83
1831 4320 2.552315 AGTTTTGTAATCTGCCACACGG 59.448 45.455 0.00 0.00 0.00 4.94
1832 4321 3.554524 CAGTTTTGTAATCTGCCACACG 58.445 45.455 0.00 0.00 0.00 4.49
1833 4322 3.308530 GCAGTTTTGTAATCTGCCACAC 58.691 45.455 10.06 0.00 45.76 3.82
1834 4323 3.641437 GCAGTTTTGTAATCTGCCACA 57.359 42.857 10.06 0.00 45.76 4.17
1839 4328 3.249799 TCGTGTGGCAGTTTTGTAATCTG 59.750 43.478 0.00 0.00 0.00 2.90
1840 4329 3.472652 TCGTGTGGCAGTTTTGTAATCT 58.527 40.909 0.00 0.00 0.00 2.40
1841 4330 3.889196 TCGTGTGGCAGTTTTGTAATC 57.111 42.857 0.00 0.00 0.00 1.75
1842 4331 4.072131 AGATCGTGTGGCAGTTTTGTAAT 58.928 39.130 0.00 0.00 0.00 1.89
1843 4332 3.472652 AGATCGTGTGGCAGTTTTGTAA 58.527 40.909 0.00 0.00 0.00 2.41
1844 4333 3.064207 GAGATCGTGTGGCAGTTTTGTA 58.936 45.455 0.00 0.00 0.00 2.41
1845 4334 1.873591 GAGATCGTGTGGCAGTTTTGT 59.126 47.619 0.00 0.00 0.00 2.83
1846 4335 1.872952 TGAGATCGTGTGGCAGTTTTG 59.127 47.619 0.00 0.00 0.00 2.44
1847 4336 2.254546 TGAGATCGTGTGGCAGTTTT 57.745 45.000 0.00 0.00 0.00 2.43
1848 4337 2.479566 ATGAGATCGTGTGGCAGTTT 57.520 45.000 0.00 0.00 0.00 2.66
1849 4338 3.610040 TTATGAGATCGTGTGGCAGTT 57.390 42.857 0.00 0.00 0.00 3.16
1850 4339 3.525537 CTTTATGAGATCGTGTGGCAGT 58.474 45.455 0.00 0.00 0.00 4.40
1851 4340 2.286294 GCTTTATGAGATCGTGTGGCAG 59.714 50.000 0.00 0.00 0.00 4.85
1852 4341 2.279741 GCTTTATGAGATCGTGTGGCA 58.720 47.619 0.00 0.00 0.00 4.92
1853 4342 1.258982 CGCTTTATGAGATCGTGTGGC 59.741 52.381 0.00 0.00 0.00 5.01
1854 4343 2.809446 TCGCTTTATGAGATCGTGTGG 58.191 47.619 0.00 0.00 0.00 4.17
1855 4344 4.621526 GATCGCTTTATGAGATCGTGTG 57.378 45.455 0.00 0.00 40.94 3.82
1860 4349 3.923461 CGAAGGGATCGCTTTATGAGATC 59.077 47.826 24.17 9.62 45.89 2.75
1861 4350 3.919216 CGAAGGGATCGCTTTATGAGAT 58.081 45.455 24.17 1.25 45.89 2.75
1862 4351 3.371102 CGAAGGGATCGCTTTATGAGA 57.629 47.619 24.17 0.00 45.89 3.27
1873 4362 2.289565 GATGGGTTTGACGAAGGGATC 58.710 52.381 0.00 0.00 0.00 3.36
1874 4363 1.064685 GGATGGGTTTGACGAAGGGAT 60.065 52.381 0.00 0.00 0.00 3.85
1875 4364 0.326927 GGATGGGTTTGACGAAGGGA 59.673 55.000 0.00 0.00 0.00 4.20
1876 4365 0.037590 TGGATGGGTTTGACGAAGGG 59.962 55.000 0.00 0.00 0.00 3.95
1877 4366 1.165270 GTGGATGGGTTTGACGAAGG 58.835 55.000 0.00 0.00 0.00 3.46
1878 4367 1.165270 GGTGGATGGGTTTGACGAAG 58.835 55.000 0.00 0.00 0.00 3.79
1879 4368 0.250989 GGGTGGATGGGTTTGACGAA 60.251 55.000 0.00 0.00 0.00 3.85
1880 4369 1.377229 GGGTGGATGGGTTTGACGA 59.623 57.895 0.00 0.00 0.00 4.20
1881 4370 0.960364 CTGGGTGGATGGGTTTGACG 60.960 60.000 0.00 0.00 0.00 4.35
1882 4371 0.611896 CCTGGGTGGATGGGTTTGAC 60.612 60.000 0.00 0.00 38.35 3.18
1883 4372 1.773635 CCTGGGTGGATGGGTTTGA 59.226 57.895 0.00 0.00 38.35 2.69
1884 4373 1.984026 GCCTGGGTGGATGGGTTTG 60.984 63.158 0.00 0.00 38.35 2.93
1885 4374 2.445155 GCCTGGGTGGATGGGTTT 59.555 61.111 0.00 0.00 38.35 3.27
1886 4375 2.863484 TGCCTGGGTGGATGGGTT 60.863 61.111 0.00 0.00 38.35 4.11
1887 4376 3.661648 GTGCCTGGGTGGATGGGT 61.662 66.667 0.00 0.00 38.35 4.51
1888 4377 4.447342 GGTGCCTGGGTGGATGGG 62.447 72.222 0.00 0.00 38.35 4.00
1889 4378 4.447342 GGGTGCCTGGGTGGATGG 62.447 72.222 0.00 0.00 38.35 3.51
1890 4379 3.660571 TGGGTGCCTGGGTGGATG 61.661 66.667 0.00 0.00 38.35 3.51
1891 4380 3.661648 GTGGGTGCCTGGGTGGAT 61.662 66.667 0.00 0.00 38.35 3.41
1894 4383 3.976701 GATCGTGGGTGCCTGGGTG 62.977 68.421 0.00 0.00 0.00 4.61
1895 4384 3.717294 GATCGTGGGTGCCTGGGT 61.717 66.667 0.00 0.00 0.00 4.51
1896 4385 4.489771 GGATCGTGGGTGCCTGGG 62.490 72.222 0.00 0.00 0.00 4.45
1897 4386 4.489771 GGGATCGTGGGTGCCTGG 62.490 72.222 0.00 0.00 0.00 4.45
1898 4387 4.489771 GGGGATCGTGGGTGCCTG 62.490 72.222 0.00 0.00 0.00 4.85
1900 4389 4.796495 GTGGGGATCGTGGGTGCC 62.796 72.222 0.00 0.00 0.00 5.01
1901 4390 4.796495 GGTGGGGATCGTGGGTGC 62.796 72.222 0.00 0.00 0.00 5.01
1902 4391 1.687840 TAGGTGGGGATCGTGGGTG 60.688 63.158 0.00 0.00 0.00 4.61
1903 4392 1.688187 GTAGGTGGGGATCGTGGGT 60.688 63.158 0.00 0.00 0.00 4.51
1904 4393 2.440817 GGTAGGTGGGGATCGTGGG 61.441 68.421 0.00 0.00 0.00 4.61
1905 4394 0.105862 TAGGTAGGTGGGGATCGTGG 60.106 60.000 0.00 0.00 0.00 4.94
1906 4395 1.893801 GATAGGTAGGTGGGGATCGTG 59.106 57.143 0.00 0.00 0.00 4.35
1907 4396 1.547223 CGATAGGTAGGTGGGGATCGT 60.547 57.143 0.00 0.00 33.33 3.73
1908 4397 1.174783 CGATAGGTAGGTGGGGATCG 58.825 60.000 0.00 0.00 0.00 3.69
1909 4398 0.896226 GCGATAGGTAGGTGGGGATC 59.104 60.000 0.00 0.00 0.00 3.36
1910 4399 0.898789 CGCGATAGGTAGGTGGGGAT 60.899 60.000 0.00 0.00 0.00 3.85
1911 4400 1.529948 CGCGATAGGTAGGTGGGGA 60.530 63.158 0.00 0.00 0.00 4.81
1912 4401 1.397390 AACGCGATAGGTAGGTGGGG 61.397 60.000 15.93 0.00 0.00 4.96
1913 4402 0.249322 CAACGCGATAGGTAGGTGGG 60.249 60.000 15.93 0.00 0.00 4.61
1914 4403 0.874607 GCAACGCGATAGGTAGGTGG 60.875 60.000 15.93 0.00 0.00 4.61
1915 4404 0.102481 AGCAACGCGATAGGTAGGTG 59.898 55.000 15.93 0.00 0.00 4.00
1916 4405 1.336125 GTAGCAACGCGATAGGTAGGT 59.664 52.381 15.93 0.00 0.00 3.08
1917 4406 1.335810 TGTAGCAACGCGATAGGTAGG 59.664 52.381 15.93 0.00 0.00 3.18
1918 4407 2.768833 TGTAGCAACGCGATAGGTAG 57.231 50.000 15.93 0.00 0.00 3.18
1919 4408 2.480073 GGTTGTAGCAACGCGATAGGTA 60.480 50.000 15.93 9.11 0.00 3.08
1920 4409 1.636988 GTTGTAGCAACGCGATAGGT 58.363 50.000 15.93 10.21 0.00 3.08
1921 4410 0.928229 GGTTGTAGCAACGCGATAGG 59.072 55.000 15.93 0.00 0.00 2.57
1922 4411 1.635844 TGGTTGTAGCAACGCGATAG 58.364 50.000 15.93 2.43 0.00 2.08
1923 4412 2.081725 TTGGTTGTAGCAACGCGATA 57.918 45.000 15.93 0.00 29.68 2.92
1924 4413 1.231221 TTTGGTTGTAGCAACGCGAT 58.769 45.000 15.93 0.00 35.07 4.58
1925 4414 1.003331 CTTTTGGTTGTAGCAACGCGA 60.003 47.619 15.93 0.00 35.07 5.87
1926 4415 1.394697 CTTTTGGTTGTAGCAACGCG 58.605 50.000 3.53 3.53 35.07 6.01
1927 4416 1.601914 CCCTTTTGGTTGTAGCAACGC 60.602 52.381 6.00 1.12 35.07 4.84
1928 4417 1.000717 CCCCTTTTGGTTGTAGCAACG 60.001 52.381 6.00 0.00 35.07 4.10
1929 4418 1.270094 GCCCCTTTTGGTTGTAGCAAC 60.270 52.381 3.62 3.62 35.07 4.17
1930 4419 1.044611 GCCCCTTTTGGTTGTAGCAA 58.955 50.000 0.00 0.00 38.10 3.91
1931 4420 0.187361 AGCCCCTTTTGGTTGTAGCA 59.813 50.000 0.00 0.00 38.10 3.49
1932 4421 0.603065 CAGCCCCTTTTGGTTGTAGC 59.397 55.000 0.00 0.00 38.10 3.58
2022 4511 1.808945 CTTCATCGCCAAGCTCTTTGT 59.191 47.619 0.00 0.00 34.87 2.83
2111 4600 3.385749 TTTCCCTCGCATCCCGCTC 62.386 63.158 0.00 0.00 39.08 5.03
2178 4667 4.481617 ATGTGTGCGGCGGCCATA 62.482 61.111 20.71 9.77 38.85 2.74
2326 4815 1.578206 GCTGACCACGCTTTCTTCCC 61.578 60.000 0.00 0.00 0.00 3.97
2535 5026 3.441572 CGGGCAAATTCTCTGTCAATTCT 59.558 43.478 0.00 0.00 0.00 2.40
2629 5120 2.478335 GAAATGGCGGAGTGGGACCA 62.478 60.000 0.00 0.00 36.43 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.