Multiple sequence alignment - TraesCS7A01G259200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G259200 chr7A 100.000 6896 0 0 1 6896 251144659 251151554 0.000000e+00 12735.0
1 TraesCS7A01G259200 chr7A 87.859 313 26 5 3789 4089 62528807 62528495 2.370000e-94 357.0
2 TraesCS7A01G259200 chr7A 97.297 74 2 0 6550 6623 251151134 251151207 7.260000e-25 126.0
3 TraesCS7A01G259200 chr7A 97.297 74 2 0 6476 6549 251151208 251151281 7.260000e-25 126.0
4 TraesCS7A01G259200 chr7B 89.336 3132 160 84 9 3046 212406802 212409853 0.000000e+00 3773.0
5 TraesCS7A01G259200 chr7B 93.253 1245 66 9 5169 6401 212411899 212413137 0.000000e+00 1818.0
6 TraesCS7A01G259200 chr7B 89.214 1094 54 21 4088 5151 212410734 212411793 0.000000e+00 1308.0
7 TraesCS7A01G259200 chr7B 96.143 726 27 1 3075 3799 212410011 212410736 0.000000e+00 1184.0
8 TraesCS7A01G259200 chr7B 87.338 308 24 6 3797 4089 374490509 374490202 8.570000e-89 339.0
9 TraesCS7A01G259200 chr7B 74.317 183 32 10 6252 6422 662308463 662308642 5.770000e-06 63.9
10 TraesCS7A01G259200 chr7D 95.186 2264 66 17 4088 6322 235983500 235985749 0.000000e+00 3537.0
11 TraesCS7A01G259200 chr7D 93.949 1636 65 15 1414 3046 235980985 235982589 0.000000e+00 2442.0
12 TraesCS7A01G259200 chr7D 95.629 755 30 3 3046 3798 235982748 235983501 0.000000e+00 1208.0
13 TraesCS7A01G259200 chr7D 90.358 726 35 19 704 1414 235980223 235980928 0.000000e+00 920.0
14 TraesCS7A01G259200 chr7D 91.026 312 11 9 11 310 235973231 235973537 8.330000e-109 405.0
15 TraesCS7A01G259200 chr7D 83.863 409 40 15 312 706 235979800 235980196 3.930000e-97 366.0
16 TraesCS7A01G259200 chr7D 92.975 242 17 0 6554 6795 235986569 235986810 3.060000e-93 353.0
17 TraesCS7A01G259200 chr7D 85.957 235 27 3 6315 6549 235986410 235986638 5.340000e-61 246.0
18 TraesCS7A01G259200 chr7D 80.214 187 33 4 6697 6881 274192093 274192277 3.350000e-28 137.0
19 TraesCS7A01G259200 chr7D 94.444 72 3 1 6779 6850 235986825 235986895 7.310000e-20 110.0
20 TraesCS7A01G259200 chr4D 90.164 305 19 4 3797 4092 319248907 319249209 3.020000e-103 387.0
21 TraesCS7A01G259200 chr4D 85.862 290 29 8 3796 4075 46489134 46488847 1.450000e-76 298.0
22 TraesCS7A01G259200 chr4D 76.667 180 25 10 6253 6416 62727926 62727748 4.430000e-12 84.2
23 TraesCS7A01G259200 chr4D 75.132 189 32 11 6254 6432 400168880 400168697 2.670000e-09 75.0
24 TraesCS7A01G259200 chr5A 88.179 313 26 9 3785 4088 670419084 670419394 5.080000e-96 363.0
25 TraesCS7A01G259200 chr5A 86.039 308 31 7 3796 4092 9297804 9297498 3.100000e-83 320.0
26 TraesCS7A01G259200 chr5A 91.429 105 9 0 1275 1379 493469627 493469523 2.000000e-30 145.0
27 TraesCS7A01G259200 chr5A 78.646 192 37 4 6690 6879 362270157 362270346 2.610000e-24 124.0
28 TraesCS7A01G259200 chr5A 80.606 165 27 5 6719 6881 362244106 362244267 9.390000e-24 122.0
29 TraesCS7A01G259200 chr5A 91.765 85 7 0 2797 2881 493467976 493467892 1.220000e-22 119.0
30 TraesCS7A01G259200 chr5A 78.986 138 25 3 1002 1138 493469932 493469798 2.650000e-14 91.6
31 TraesCS7A01G259200 chr5A 90.909 44 2 2 4131 4173 580557763 580557805 2.690000e-04 58.4
32 TraesCS7A01G259200 chr2D 87.869 305 27 5 3795 4089 95777822 95777518 3.960000e-92 350.0
33 TraesCS7A01G259200 chr2D 78.866 194 37 4 6690 6881 60864323 60864514 2.020000e-25 128.0
34 TraesCS7A01G259200 chr2D 84.270 89 14 0 6253 6341 608444052 608444140 3.430000e-13 87.9
35 TraesCS7A01G259200 chr2D 89.286 56 5 1 6381 6436 79274684 79274738 1.240000e-07 69.4
36 TraesCS7A01G259200 chr2D 100.000 30 0 0 4144 4173 580385721 580385692 1.000000e-03 56.5
37 TraesCS7A01G259200 chr6A 88.841 233 14 5 3850 4073 256321833 256322062 6.810000e-70 276.0
38 TraesCS7A01G259200 chr6A 90.476 42 3 1 4131 4171 43276628 43276669 3.000000e-03 54.7
39 TraesCS7A01G259200 chr6A 90.476 42 3 1 4131 4171 44094418 44094459 3.000000e-03 54.7
40 TraesCS7A01G259200 chr6A 90.476 42 3 1 4131 4171 44185715 44185756 3.000000e-03 54.7
41 TraesCS7A01G259200 chr5D 83.333 306 38 4 3797 4090 41709049 41709353 3.170000e-68 270.0
42 TraesCS7A01G259200 chr5D 92.079 101 8 0 1276 1376 390269235 390269135 7.210000e-30 143.0
43 TraesCS7A01G259200 chr5D 91.765 85 7 0 2797 2881 390267577 390267493 1.220000e-22 119.0
44 TraesCS7A01G259200 chr5D 79.866 149 25 4 1002 1149 390269536 390269392 3.400000e-18 104.0
45 TraesCS7A01G259200 chr4A 83.459 266 39 4 3797 4057 451752085 451752350 6.910000e-60 243.0
46 TraesCS7A01G259200 chr5B 80.100 201 36 4 6686 6884 535363690 535363888 5.570000e-31 147.0
47 TraesCS7A01G259200 chr5B 92.079 101 8 0 1276 1376 470210469 470210369 7.210000e-30 143.0
48 TraesCS7A01G259200 chr5B 91.667 84 7 0 2797 2880 470208785 470208702 4.370000e-22 117.0
49 TraesCS7A01G259200 chr5B 77.551 196 32 9 6252 6438 678169328 678169136 2.630000e-19 108.0
50 TraesCS7A01G259200 chr5B 79.195 149 26 4 1002 1149 470210769 470210625 1.580000e-16 99.0
51 TraesCS7A01G259200 chr5B 100.000 30 0 0 4144 4173 633222152 633222181 1.000000e-03 56.5
52 TraesCS7A01G259200 chr3B 77.202 193 29 10 6254 6434 96817201 96817390 1.580000e-16 99.0
53 TraesCS7A01G259200 chr3B 77.976 168 29 7 6254 6416 606277804 606277968 1.580000e-16 99.0
54 TraesCS7A01G259200 chr3B 90.769 65 6 0 6254 6318 794597172 794597108 3.430000e-13 87.9
55 TraesCS7A01G259200 chr1A 76.963 191 31 10 6252 6431 456339542 456339354 5.690000e-16 97.1
56 TraesCS7A01G259200 chr1A 89.552 67 6 1 6252 6318 563276084 563276149 4.430000e-12 84.2
57 TraesCS7A01G259200 chrUn 76.364 165 30 8 6256 6411 87057092 87057256 5.730000e-11 80.5
58 TraesCS7A01G259200 chr2A 97.778 45 1 0 6256 6300 603782390 603782434 2.060000e-10 78.7
59 TraesCS7A01G259200 chr1D 96.970 33 1 0 6384 6416 213549618 213549586 1.000000e-03 56.5
60 TraesCS7A01G259200 chr6D 100.000 29 0 0 4144 4172 62211822 62211794 3.000000e-03 54.7
61 TraesCS7A01G259200 chr6D 100.000 29 0 0 6392 6420 113465155 113465183 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G259200 chr7A 251144659 251151554 6895 False 4329.00 12735 98.198000 1 6896 3 chr7A.!!$F1 6895
1 TraesCS7A01G259200 chr7B 212406802 212413137 6335 False 2020.75 3773 91.986500 9 6401 4 chr7B.!!$F2 6392
2 TraesCS7A01G259200 chr7D 235979800 235986895 7095 False 1147.75 3537 91.545125 312 6850 8 chr7D.!!$F3 6538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 550 0.099968 TACGCACTGCATACGAGTCC 59.900 55.0 9.75 0.0 0.00 3.85 F
505 553 0.389817 GCACTGCATACGAGTCCACA 60.390 55.0 0.00 0.0 0.00 4.17 F
727 797 0.393537 AGAAATGCTCCTCCCTTGCG 60.394 55.0 0.00 0.0 0.00 4.85 F
1470 1653 0.537143 TGCGATGCCCATATGTTCCC 60.537 55.0 1.24 0.0 0.00 3.97 F
2362 2555 1.050988 TCACCATGGCCCTAGCTCTC 61.051 60.0 13.04 0.0 39.73 3.20 F
3809 4165 0.674534 ATTCCATACTCGCTCCGTCC 59.325 55.0 0.00 0.0 0.00 4.79 F
3995 4351 0.030603 GGGGTTGGGAGGAGAGAGAT 60.031 60.0 0.00 0.0 0.00 2.75 F
4006 4362 0.251354 GAGAGAGATGGTGCCTTGCA 59.749 55.0 0.00 0.0 35.60 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 1652 1.070843 CAAACGTCACAAGCACTACGG 60.071 52.381 0.00 0.00 39.57 4.02 R
1470 1653 1.591158 ACAAACGTCACAAGCACTACG 59.409 47.619 0.00 0.00 40.99 3.51 R
1898 2090 2.031683 CGCGGTAAAAAGAAGGCATAGG 59.968 50.000 0.00 0.00 0.00 2.57 R
2955 3149 0.675633 ATGCCTTGTGTGTTGAAGCC 59.324 50.000 0.00 0.00 0.00 4.35 R
3976 4332 0.030603 ATCTCTCTCCTCCCAACCCC 60.031 60.000 0.00 0.00 0.00 4.95 R
4699 5083 2.228059 ACATGGAAGCTGCATATGCTC 58.772 47.619 27.13 18.44 40.22 4.26 R
5832 6316 0.108992 GCACGACACGGTATTCCTCA 60.109 55.000 0.00 0.00 0.00 3.86 R
5902 6386 0.247185 CAAATGGAAGCGGCATTGGT 59.753 50.000 1.45 0.00 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 3.085533 ACTCTAGCATTGACTCAGACGT 58.914 45.455 0.00 0.00 0.00 4.34
101 102 2.341543 CACGACAGAGCCAGCAGT 59.658 61.111 0.00 0.00 0.00 4.40
120 121 4.033014 GCAGTCTAAACTTATTCGTCTGGC 59.967 45.833 0.00 0.00 31.71 4.85
144 145 0.179129 CGTATACGCACTTTCCCGGT 60.179 55.000 13.08 0.00 0.00 5.28
175 186 4.131088 GCGACCCCTCTCGTCCAC 62.131 72.222 0.00 0.00 35.99 4.02
177 188 2.971452 GACCCCTCTCGTCCACAC 59.029 66.667 0.00 0.00 0.00 3.82
190 201 3.095738 CGTCCACACAGTTTTCGTTTTC 58.904 45.455 0.00 0.00 0.00 2.29
194 205 3.350912 CACACAGTTTTCGTTTTCTCGG 58.649 45.455 0.00 0.00 0.00 4.63
231 242 1.269012 TAAACGGGGTCGGTCAGATT 58.731 50.000 0.00 0.00 41.39 2.40
270 281 4.228567 TGACGCCGCACCTTCACA 62.229 61.111 0.00 0.00 0.00 3.58
281 298 3.679917 CGCACCTTCACATCATACTCCTT 60.680 47.826 0.00 0.00 0.00 3.36
290 307 7.672983 TCACATCATACTCCTTGTTTCTTTC 57.327 36.000 0.00 0.00 0.00 2.62
310 327 1.492176 CTTGCCATGGTCCTATCCACT 59.508 52.381 14.67 0.00 40.51 4.00
319 336 1.227380 CCTATCCACTCCACAGCGC 60.227 63.158 0.00 0.00 0.00 5.92
354 372 3.603158 AAAAAGGGCAAGTCGTTGTTT 57.397 38.095 0.00 0.00 35.92 2.83
355 373 4.722361 AAAAAGGGCAAGTCGTTGTTTA 57.278 36.364 0.00 0.00 35.92 2.01
383 401 0.322816 TGGAACAGGAGAGCATTGCC 60.323 55.000 4.70 0.00 0.00 4.52
448 467 2.202440 AGACAACCGCGTCGATCG 60.202 61.111 9.36 9.36 40.98 3.69
460 479 1.447838 TCGATCGAACCAAGGCAGC 60.448 57.895 16.99 0.00 0.00 5.25
476 524 2.126346 GCAGCGGTCAAACATGGC 60.126 61.111 0.00 0.00 0.00 4.40
477 525 2.176546 CAGCGGTCAAACATGGCG 59.823 61.111 0.00 0.00 0.00 5.69
478 526 2.281484 AGCGGTCAAACATGGCGT 60.281 55.556 0.00 0.00 0.00 5.68
479 527 1.896660 AGCGGTCAAACATGGCGTT 60.897 52.632 0.00 0.00 40.50 4.84
481 529 0.238817 GCGGTCAAACATGGCGTTTA 59.761 50.000 0.00 0.00 46.27 2.01
482 530 1.135517 GCGGTCAAACATGGCGTTTAT 60.136 47.619 0.00 0.00 46.27 1.40
483 531 2.669950 GCGGTCAAACATGGCGTTTATT 60.670 45.455 0.00 0.00 46.27 1.40
485 533 4.092816 CGGTCAAACATGGCGTTTATTAC 58.907 43.478 0.00 0.00 46.27 1.89
497 545 3.518544 CGTTTATTACGCACTGCATACG 58.481 45.455 1.11 0.00 44.26 3.06
498 546 3.241091 CGTTTATTACGCACTGCATACGA 59.759 43.478 9.75 0.00 44.26 3.43
499 547 4.603173 CGTTTATTACGCACTGCATACGAG 60.603 45.833 9.75 0.00 44.26 4.18
500 548 2.579207 ATTACGCACTGCATACGAGT 57.421 45.000 9.75 1.64 0.00 4.18
501 549 1.904144 TTACGCACTGCATACGAGTC 58.096 50.000 9.75 0.00 0.00 3.36
502 550 0.099968 TACGCACTGCATACGAGTCC 59.900 55.000 9.75 0.00 0.00 3.85
503 551 1.153842 CGCACTGCATACGAGTCCA 60.154 57.895 1.11 0.00 0.00 4.02
504 552 1.413767 CGCACTGCATACGAGTCCAC 61.414 60.000 1.11 0.00 0.00 4.02
505 553 0.389817 GCACTGCATACGAGTCCACA 60.390 55.000 0.00 0.00 0.00 4.17
506 554 1.350193 CACTGCATACGAGTCCACAC 58.650 55.000 0.00 0.00 0.00 3.82
507 555 0.966179 ACTGCATACGAGTCCACACA 59.034 50.000 0.00 0.00 0.00 3.72
508 556 1.067565 ACTGCATACGAGTCCACACAG 60.068 52.381 0.00 0.00 0.00 3.66
510 558 2.163613 CTGCATACGAGTCCACACAGTA 59.836 50.000 0.00 0.00 0.00 2.74
511 559 2.758423 TGCATACGAGTCCACACAGTAT 59.242 45.455 0.00 0.00 32.23 2.12
514 562 4.499865 GCATACGAGTCCACACAGTATCAT 60.500 45.833 0.00 0.00 30.66 2.45
517 565 2.196749 GAGTCCACACAGTATCATGCG 58.803 52.381 0.00 0.00 0.00 4.73
518 566 1.824852 AGTCCACACAGTATCATGCGA 59.175 47.619 0.00 0.00 0.00 5.10
519 567 2.159184 AGTCCACACAGTATCATGCGAG 60.159 50.000 0.00 0.00 0.00 5.03
524 572 2.868583 ACACAGTATCATGCGAGCATTC 59.131 45.455 7.97 0.35 33.90 2.67
533 581 3.566742 TCATGCGAGCATTCAAAGCATAT 59.433 39.130 7.97 0.00 45.43 1.78
535 583 2.684374 TGCGAGCATTCAAAGCATATGT 59.316 40.909 4.29 0.00 32.43 2.29
536 584 3.040795 GCGAGCATTCAAAGCATATGTG 58.959 45.455 4.29 0.00 0.00 3.21
560 614 4.766404 AGCTTTGGTAGAAATGGAAACG 57.234 40.909 0.00 0.00 0.00 3.60
562 616 5.010282 AGCTTTGGTAGAAATGGAAACGAT 58.990 37.500 0.00 0.00 0.00 3.73
584 652 7.756722 ACGATGGAAATAAAAGAGAGCAAATTG 59.243 33.333 0.00 0.00 0.00 2.32
607 675 0.466189 ACACCAAACAGGACCAGCAG 60.466 55.000 0.00 0.00 41.22 4.24
623 692 3.119495 CCAGCAGTCCCTTTTATTTTCCG 60.119 47.826 0.00 0.00 0.00 4.30
624 693 2.492088 AGCAGTCCCTTTTATTTTCCGC 59.508 45.455 0.00 0.00 0.00 5.54
632 702 3.428862 CCTTTTATTTTCCGCCTGCGAAT 60.429 43.478 13.94 7.57 42.83 3.34
714 784 2.395690 GCGCGTCACGGAGAAATG 59.604 61.111 8.43 0.00 43.93 2.32
715 785 2.395690 CGCGTCACGGAGAAATGC 59.604 61.111 0.00 0.00 38.44 3.56
717 787 1.710339 GCGTCACGGAGAAATGCTC 59.290 57.895 0.00 0.00 43.17 4.26
726 796 1.387539 GAGAAATGCTCCTCCCTTGC 58.612 55.000 0.00 0.00 37.69 4.01
727 797 0.393537 AGAAATGCTCCTCCCTTGCG 60.394 55.000 0.00 0.00 0.00 4.85
728 798 1.997928 GAAATGCTCCTCCCTTGCGC 61.998 60.000 0.00 0.00 0.00 6.09
729 799 2.769652 AAATGCTCCTCCCTTGCGCA 62.770 55.000 5.66 5.66 34.83 6.09
730 800 3.984193 ATGCTCCTCCCTTGCGCAC 62.984 63.158 11.12 0.00 32.94 5.34
750 854 2.265904 GCCAAACCTCCGTGAACCC 61.266 63.158 0.00 0.00 0.00 4.11
751 855 1.964373 CCAAACCTCCGTGAACCCG 60.964 63.158 0.00 0.00 0.00 5.28
1221 1346 0.739112 CTCTCCTGCAGTTTCTCCGC 60.739 60.000 13.81 0.00 0.00 5.54
1233 1358 2.341846 TTCTCCGCTTTGGTTCTGTT 57.658 45.000 0.00 0.00 39.52 3.16
1267 1392 4.729227 TTTTCCTTCCTTTTTGCTTCGT 57.271 36.364 0.00 0.00 0.00 3.85
1469 1652 0.877071 CTGCGATGCCCATATGTTCC 59.123 55.000 1.24 0.00 0.00 3.62
1470 1653 0.537143 TGCGATGCCCATATGTTCCC 60.537 55.000 1.24 0.00 0.00 3.97
1632 1817 2.375509 GGGGAATTGGATCCTCCGTTAT 59.624 50.000 14.23 0.00 40.17 1.89
1650 1835 4.575236 CGTTATCTAGCTGTCAGTGTCCTA 59.425 45.833 0.00 0.00 0.00 2.94
1725 1915 6.371809 TCTGATCCAACTGTTAAAACACAC 57.628 37.500 0.00 0.00 34.70 3.82
1790 1982 4.381411 CCAGGAGCAAGTATAACTAAGCC 58.619 47.826 0.00 0.00 32.02 4.35
1888 2080 4.927267 TTGATCACCCTGGTACTTGATT 57.073 40.909 0.00 0.00 0.00 2.57
1894 2086 2.290071 ACCCTGGTACTTGATTTGACGG 60.290 50.000 0.00 0.00 0.00 4.79
1896 2088 3.370527 CCCTGGTACTTGATTTGACGGAT 60.371 47.826 0.00 0.00 0.00 4.18
1898 2090 4.809426 CCTGGTACTTGATTTGACGGATAC 59.191 45.833 0.00 0.00 0.00 2.24
2030 2222 2.879103 TGGGAAAGCTAAAGAGTGGG 57.121 50.000 0.00 0.00 0.00 4.61
2169 2361 6.494893 TTGTGAATGTAGTTATTGGTGAGC 57.505 37.500 0.00 0.00 0.00 4.26
2182 2374 8.181573 AGTTATTGGTGAGCAAATTTGTATACG 58.818 33.333 19.03 0.00 0.00 3.06
2362 2555 1.050988 TCACCATGGCCCTAGCTCTC 61.051 60.000 13.04 0.00 39.73 3.20
2397 2590 1.789506 AGAAGAACACGAGAGCTTGC 58.210 50.000 0.00 0.00 0.00 4.01
2436 2629 2.423538 AGTGTTGTTGGTGCTCTGTTTC 59.576 45.455 0.00 0.00 0.00 2.78
2442 2635 1.236616 TGGTGCTCTGTTTCATGCCG 61.237 55.000 0.00 0.00 0.00 5.69
2463 2656 6.096695 GCCGTTTCTTAATTCAAGCCAAATA 58.903 36.000 0.00 0.00 33.94 1.40
2565 2758 3.390311 CAGATGTCATCATTCTGGAGGGA 59.610 47.826 15.20 0.00 34.06 4.20
2932 3125 7.554118 CACTTTTGGATCTCTTAGCCTTATTCA 59.446 37.037 0.00 0.00 33.51 2.57
2964 3158 6.824958 ATATTAACTCCCTAGGCTTCAACA 57.175 37.500 2.05 0.00 0.00 3.33
2967 3161 1.348036 ACTCCCTAGGCTTCAACACAC 59.652 52.381 2.05 0.00 0.00 3.82
3208 3562 4.814147 AGTATGCTGATGTGATCATACCG 58.186 43.478 0.00 0.00 41.09 4.02
3268 3622 5.120363 TGCGCAACATATTCGTACAAAACTA 59.880 36.000 8.16 0.00 0.00 2.24
3307 3661 7.972527 TGTGCAAATTATATCCAAATGTTTGC 58.027 30.769 11.65 11.65 45.93 3.68
3341 3695 7.441458 AGACAACTTTCCAGGTATATTTATCGC 59.559 37.037 0.00 0.00 0.00 4.58
3342 3696 6.485648 ACAACTTTCCAGGTATATTTATCGCC 59.514 38.462 0.00 0.00 0.00 5.54
3367 3721 7.185453 CACTGTTGCTCTTTCAGATTTATAGC 58.815 38.462 0.00 0.00 33.93 2.97
3522 3878 3.823281 TGGTCTTGTTTCTCGTAACCA 57.177 42.857 0.00 0.00 33.13 3.67
3547 3903 8.097662 CACTACCTCTTTGTCCTTTCTTAGATT 58.902 37.037 0.00 0.00 0.00 2.40
3584 3940 2.030007 GTGGCAAAGTTGAGCTGCATAA 60.030 45.455 1.02 0.00 37.83 1.90
3729 4085 3.831323 TCACTGGTTCCATTGTGTCATT 58.169 40.909 8.60 0.00 0.00 2.57
3802 4158 8.827677 AGTCAAATAACTTAATTCCATACTCGC 58.172 33.333 0.00 0.00 0.00 5.03
3803 4159 8.827677 GTCAAATAACTTAATTCCATACTCGCT 58.172 33.333 0.00 0.00 0.00 4.93
3804 4160 9.042008 TCAAATAACTTAATTCCATACTCGCTC 57.958 33.333 0.00 0.00 0.00 5.03
3805 4161 7.964604 AATAACTTAATTCCATACTCGCTCC 57.035 36.000 0.00 0.00 0.00 4.70
3806 4162 3.978687 ACTTAATTCCATACTCGCTCCG 58.021 45.455 0.00 0.00 0.00 4.63
3807 4163 3.383825 ACTTAATTCCATACTCGCTCCGT 59.616 43.478 0.00 0.00 0.00 4.69
3808 4164 2.510768 AATTCCATACTCGCTCCGTC 57.489 50.000 0.00 0.00 0.00 4.79
3809 4165 0.674534 ATTCCATACTCGCTCCGTCC 59.325 55.000 0.00 0.00 0.00 4.79
3810 4166 1.721664 TTCCATACTCGCTCCGTCCG 61.722 60.000 0.00 0.00 0.00 4.79
3811 4167 2.331805 CATACTCGCTCCGTCCGG 59.668 66.667 0.00 0.00 0.00 5.14
3812 4168 2.905880 ATACTCGCTCCGTCCGGG 60.906 66.667 0.00 0.00 35.59 5.73
3813 4169 3.411114 ATACTCGCTCCGTCCGGGA 62.411 63.158 0.00 0.00 44.68 5.14
3814 4170 2.898920 ATACTCGCTCCGTCCGGGAA 62.899 60.000 0.00 0.00 46.61 3.97
3815 4171 4.194720 CTCGCTCCGTCCGGGAAG 62.195 72.222 0.00 0.00 46.61 3.46
3816 4172 4.728110 TCGCTCCGTCCGGGAAGA 62.728 66.667 11.78 4.76 46.61 2.87
3817 4173 4.194720 CGCTCCGTCCGGGAAGAG 62.195 72.222 17.15 17.15 46.61 2.85
3818 4174 3.069318 GCTCCGTCCGGGAAGAGT 61.069 66.667 20.58 0.00 46.61 3.24
3819 4175 2.885861 CTCCGTCCGGGAAGAGTG 59.114 66.667 11.78 0.00 46.61 3.51
3820 4176 1.977544 CTCCGTCCGGGAAGAGTGT 60.978 63.158 11.78 0.00 46.61 3.55
3821 4177 0.679002 CTCCGTCCGGGAAGAGTGTA 60.679 60.000 11.78 0.00 46.61 2.90
3822 4178 0.962356 TCCGTCCGGGAAGAGTGTAC 60.962 60.000 11.78 0.00 43.62 2.90
3823 4179 1.246056 CCGTCCGGGAAGAGTGTACA 61.246 60.000 11.78 0.00 38.47 2.90
3824 4180 0.815734 CGTCCGGGAAGAGTGTACAT 59.184 55.000 3.68 0.00 0.00 2.29
3825 4181 1.203994 CGTCCGGGAAGAGTGTACATT 59.796 52.381 3.68 0.00 0.00 2.71
3826 4182 2.353406 CGTCCGGGAAGAGTGTACATTT 60.353 50.000 3.68 0.00 0.00 2.32
3827 4183 3.119388 CGTCCGGGAAGAGTGTACATTTA 60.119 47.826 3.68 0.00 0.00 1.40
3828 4184 4.430908 GTCCGGGAAGAGTGTACATTTAG 58.569 47.826 0.00 0.00 0.00 1.85
3829 4185 3.118884 TCCGGGAAGAGTGTACATTTAGC 60.119 47.826 0.00 0.00 0.00 3.09
3830 4186 3.118738 CCGGGAAGAGTGTACATTTAGCT 60.119 47.826 0.00 0.00 0.00 3.32
3831 4187 4.504858 CGGGAAGAGTGTACATTTAGCTT 58.495 43.478 0.00 0.00 0.00 3.74
3832 4188 4.935808 CGGGAAGAGTGTACATTTAGCTTT 59.064 41.667 0.00 0.00 0.00 3.51
3833 4189 6.103997 CGGGAAGAGTGTACATTTAGCTTTA 58.896 40.000 0.00 0.00 0.00 1.85
3834 4190 6.592607 CGGGAAGAGTGTACATTTAGCTTTAA 59.407 38.462 0.00 0.00 0.00 1.52
3835 4191 7.118680 CGGGAAGAGTGTACATTTAGCTTTAAA 59.881 37.037 0.00 0.00 0.00 1.52
3836 4192 8.789762 GGGAAGAGTGTACATTTAGCTTTAAAA 58.210 33.333 0.00 0.00 0.00 1.52
3846 4202 8.293114 ACATTTAGCTTTAAAATTTGTCCACG 57.707 30.769 0.00 0.00 0.00 4.94
3847 4203 8.138712 ACATTTAGCTTTAAAATTTGTCCACGA 58.861 29.630 0.00 0.00 0.00 4.35
3848 4204 8.973378 CATTTAGCTTTAAAATTTGTCCACGAA 58.027 29.630 0.00 0.00 0.00 3.85
3849 4205 8.928270 TTTAGCTTTAAAATTTGTCCACGAAA 57.072 26.923 0.00 0.00 0.00 3.46
3850 4206 8.568732 TTAGCTTTAAAATTTGTCCACGAAAG 57.431 30.769 0.00 0.00 0.00 2.62
3851 4207 6.801575 AGCTTTAAAATTTGTCCACGAAAGA 58.198 32.000 0.00 0.00 0.00 2.52
3852 4208 6.918022 AGCTTTAAAATTTGTCCACGAAAGAG 59.082 34.615 0.00 0.00 0.00 2.85
3853 4209 6.695713 GCTTTAAAATTTGTCCACGAAAGAGT 59.304 34.615 0.00 0.00 0.00 3.24
3854 4210 7.858879 GCTTTAAAATTTGTCCACGAAAGAGTA 59.141 33.333 0.00 0.00 0.00 2.59
3855 4211 9.166126 CTTTAAAATTTGTCCACGAAAGAGTAC 57.834 33.333 0.00 0.00 0.00 2.73
3856 4212 6.937436 AAAATTTGTCCACGAAAGAGTACT 57.063 33.333 0.00 0.00 0.00 2.73
3857 4213 6.937436 AAATTTGTCCACGAAAGAGTACTT 57.063 33.333 0.00 0.00 38.05 2.24
3858 4214 6.541111 AATTTGTCCACGAAAGAGTACTTC 57.459 37.500 0.00 0.00 35.05 3.01
3859 4215 4.931661 TTGTCCACGAAAGAGTACTTCT 57.068 40.909 0.00 0.00 37.93 2.85
3860 4216 6.395426 TTTGTCCACGAAAGAGTACTTCTA 57.605 37.500 0.00 0.00 34.14 2.10
3861 4217 6.585695 TTGTCCACGAAAGAGTACTTCTAT 57.414 37.500 0.00 0.00 34.14 1.98
3862 4218 6.585695 TGTCCACGAAAGAGTACTTCTATT 57.414 37.500 0.00 0.00 34.14 1.73
3863 4219 6.989659 TGTCCACGAAAGAGTACTTCTATTT 58.010 36.000 0.00 0.00 39.82 1.40
3864 4220 7.439381 TGTCCACGAAAGAGTACTTCTATTTT 58.561 34.615 0.00 0.00 37.65 1.82
3865 4221 7.597743 TGTCCACGAAAGAGTACTTCTATTTTC 59.402 37.037 0.00 2.86 37.65 2.29
3866 4222 7.063191 GTCCACGAAAGAGTACTTCTATTTTCC 59.937 40.741 0.00 0.00 37.65 3.13
3867 4223 6.313164 CCACGAAAGAGTACTTCTATTTTCCC 59.687 42.308 0.00 0.00 37.65 3.97
3868 4224 6.872020 CACGAAAGAGTACTTCTATTTTCCCA 59.128 38.462 0.00 0.00 37.65 4.37
3869 4225 7.386848 CACGAAAGAGTACTTCTATTTTCCCAA 59.613 37.037 0.00 0.00 37.65 4.12
3870 4226 8.101419 ACGAAAGAGTACTTCTATTTTCCCAAT 58.899 33.333 0.00 0.00 37.65 3.16
3871 4227 8.391106 CGAAAGAGTACTTCTATTTTCCCAATG 58.609 37.037 0.00 0.00 37.65 2.82
3872 4228 7.631717 AAGAGTACTTCTATTTTCCCAATGC 57.368 36.000 0.00 0.00 34.14 3.56
3873 4229 6.721318 AGAGTACTTCTATTTTCCCAATGCA 58.279 36.000 0.00 0.00 33.23 3.96
3874 4230 6.599638 AGAGTACTTCTATTTTCCCAATGCAC 59.400 38.462 0.00 0.00 33.23 4.57
3875 4231 6.485171 AGTACTTCTATTTTCCCAATGCACT 58.515 36.000 0.00 0.00 0.00 4.40
3876 4232 6.948309 AGTACTTCTATTTTCCCAATGCACTT 59.052 34.615 0.00 0.00 0.00 3.16
3877 4233 6.670695 ACTTCTATTTTCCCAATGCACTTT 57.329 33.333 0.00 0.00 0.00 2.66
3878 4234 7.775053 ACTTCTATTTTCCCAATGCACTTTA 57.225 32.000 0.00 0.00 0.00 1.85
3879 4235 8.189119 ACTTCTATTTTCCCAATGCACTTTAA 57.811 30.769 0.00 0.00 0.00 1.52
3880 4236 8.646900 ACTTCTATTTTCCCAATGCACTTTAAA 58.353 29.630 0.00 0.00 0.00 1.52
3881 4237 9.143631 CTTCTATTTTCCCAATGCACTTTAAAG 57.856 33.333 13.76 13.76 0.00 1.85
3882 4238 8.189119 TCTATTTTCCCAATGCACTTTAAAGT 57.811 30.769 15.22 15.22 40.60 2.66
3912 4268 6.754702 AAATGTTTCTCTCTCATCACATGG 57.245 37.500 0.00 0.00 0.00 3.66
3913 4269 4.897509 TGTTTCTCTCTCATCACATGGT 57.102 40.909 0.00 0.00 0.00 3.55
3914 4270 6.550938 ATGTTTCTCTCTCATCACATGGTA 57.449 37.500 0.00 0.00 0.00 3.25
3915 4271 6.358974 TGTTTCTCTCTCATCACATGGTAA 57.641 37.500 0.00 0.00 0.00 2.85
3916 4272 6.950842 TGTTTCTCTCTCATCACATGGTAAT 58.049 36.000 0.00 0.00 0.00 1.89
3917 4273 7.044181 TGTTTCTCTCTCATCACATGGTAATC 58.956 38.462 0.00 0.00 0.00 1.75
3918 4274 6.796785 TTCTCTCTCATCACATGGTAATCA 57.203 37.500 0.00 0.00 0.00 2.57
3919 4275 6.796785 TCTCTCTCATCACATGGTAATCAA 57.203 37.500 0.00 0.00 0.00 2.57
3920 4276 6.814043 TCTCTCTCATCACATGGTAATCAAG 58.186 40.000 0.00 0.00 0.00 3.02
3921 4277 6.608808 TCTCTCTCATCACATGGTAATCAAGA 59.391 38.462 0.00 0.00 0.00 3.02
3922 4278 6.577103 TCTCTCATCACATGGTAATCAAGAC 58.423 40.000 0.00 0.00 0.00 3.01
3923 4279 5.674525 TCTCATCACATGGTAATCAAGACC 58.325 41.667 0.00 0.00 37.49 3.85
3936 4292 9.391006 TGGTAATCAAGACCAATAACATTCTAC 57.609 33.333 0.00 0.00 44.08 2.59
3937 4293 9.391006 GGTAATCAAGACCAATAACATTCTACA 57.609 33.333 0.00 0.00 36.91 2.74
3939 4295 8.862325 AATCAAGACCAATAACATTCTACACA 57.138 30.769 0.00 0.00 0.00 3.72
3940 4296 9.466497 AATCAAGACCAATAACATTCTACACAT 57.534 29.630 0.00 0.00 0.00 3.21
3941 4297 8.267620 TCAAGACCAATAACATTCTACACATG 57.732 34.615 0.00 0.00 0.00 3.21
3942 4298 7.336679 TCAAGACCAATAACATTCTACACATGG 59.663 37.037 0.00 0.00 0.00 3.66
3943 4299 6.721318 AGACCAATAACATTCTACACATGGT 58.279 36.000 0.00 0.00 41.10 3.55
3944 4300 7.016361 GACCAATAACATTCTACACATGGTC 57.984 40.000 5.47 5.47 45.04 4.02
3945 4301 6.721318 ACCAATAACATTCTACACATGGTCT 58.279 36.000 0.00 0.00 33.59 3.85
3946 4302 6.823689 ACCAATAACATTCTACACATGGTCTC 59.176 38.462 0.00 0.00 33.59 3.36
3947 4303 6.260936 CCAATAACATTCTACACATGGTCTCC 59.739 42.308 0.00 0.00 0.00 3.71
3948 4304 6.814954 ATAACATTCTACACATGGTCTCCT 57.185 37.500 0.00 0.00 0.00 3.69
3949 4305 5.505181 AACATTCTACACATGGTCTCCTT 57.495 39.130 0.00 0.00 0.00 3.36
3950 4306 6.620877 AACATTCTACACATGGTCTCCTTA 57.379 37.500 0.00 0.00 0.00 2.69
3951 4307 6.620877 ACATTCTACACATGGTCTCCTTAA 57.379 37.500 0.00 0.00 0.00 1.85
3952 4308 7.200434 ACATTCTACACATGGTCTCCTTAAT 57.800 36.000 0.00 0.00 0.00 1.40
3953 4309 7.633789 ACATTCTACACATGGTCTCCTTAATT 58.366 34.615 0.00 0.00 0.00 1.40
3954 4310 8.109634 ACATTCTACACATGGTCTCCTTAATTT 58.890 33.333 0.00 0.00 0.00 1.82
3955 4311 8.960591 CATTCTACACATGGTCTCCTTAATTTT 58.039 33.333 0.00 0.00 0.00 1.82
3956 4312 8.934023 TTCTACACATGGTCTCCTTAATTTTT 57.066 30.769 0.00 0.00 0.00 1.94
3958 4314 9.444600 TCTACACATGGTCTCCTTAATTTTTAC 57.555 33.333 0.00 0.00 0.00 2.01
3959 4315 9.226606 CTACACATGGTCTCCTTAATTTTTACA 57.773 33.333 0.00 0.00 0.00 2.41
3960 4316 8.650143 ACACATGGTCTCCTTAATTTTTACAT 57.350 30.769 0.00 0.00 0.00 2.29
3961 4317 8.522830 ACACATGGTCTCCTTAATTTTTACATG 58.477 33.333 0.00 0.00 38.27 3.21
3962 4318 7.489113 CACATGGTCTCCTTAATTTTTACATGC 59.511 37.037 0.00 0.00 36.40 4.06
3963 4319 7.178274 ACATGGTCTCCTTAATTTTTACATGCA 59.822 33.333 0.00 0.00 36.40 3.96
3964 4320 6.919721 TGGTCTCCTTAATTTTTACATGCAC 58.080 36.000 0.00 0.00 0.00 4.57
3965 4321 6.719370 TGGTCTCCTTAATTTTTACATGCACT 59.281 34.615 0.00 0.00 0.00 4.40
3966 4322 7.232534 TGGTCTCCTTAATTTTTACATGCACTT 59.767 33.333 0.00 0.00 0.00 3.16
3967 4323 8.736244 GGTCTCCTTAATTTTTACATGCACTTA 58.264 33.333 0.00 0.00 0.00 2.24
3968 4324 9.774742 GTCTCCTTAATTTTTACATGCACTTAG 57.225 33.333 0.00 0.00 0.00 2.18
3969 4325 8.458843 TCTCCTTAATTTTTACATGCACTTAGC 58.541 33.333 0.00 0.00 45.96 3.09
3970 4326 8.348285 TCCTTAATTTTTACATGCACTTAGCT 57.652 30.769 0.00 0.00 45.94 3.32
3971 4327 8.458843 TCCTTAATTTTTACATGCACTTAGCTC 58.541 33.333 0.00 0.00 45.94 4.09
3972 4328 8.243426 CCTTAATTTTTACATGCACTTAGCTCA 58.757 33.333 0.00 0.00 45.94 4.26
3973 4329 9.793252 CTTAATTTTTACATGCACTTAGCTCAT 57.207 29.630 0.00 0.00 45.94 2.90
3975 4331 8.470040 AATTTTTACATGCACTTAGCTCATTG 57.530 30.769 0.00 0.00 45.94 2.82
3976 4332 5.565592 TTTACATGCACTTAGCTCATTGG 57.434 39.130 0.00 0.00 45.94 3.16
3977 4333 2.372264 ACATGCACTTAGCTCATTGGG 58.628 47.619 0.00 0.00 45.94 4.12
3978 4334 1.679680 CATGCACTTAGCTCATTGGGG 59.320 52.381 0.00 0.00 45.94 4.96
3979 4335 0.034186 TGCACTTAGCTCATTGGGGG 60.034 55.000 0.00 0.00 45.94 5.40
3980 4336 0.034089 GCACTTAGCTCATTGGGGGT 60.034 55.000 0.00 0.00 41.15 4.95
3981 4337 1.616994 GCACTTAGCTCATTGGGGGTT 60.617 52.381 0.00 0.00 41.15 4.11
3982 4338 2.094675 CACTTAGCTCATTGGGGGTTG 58.905 52.381 0.00 0.00 0.00 3.77
3983 4339 1.005924 ACTTAGCTCATTGGGGGTTGG 59.994 52.381 0.00 0.00 0.00 3.77
3984 4340 0.334676 TTAGCTCATTGGGGGTTGGG 59.665 55.000 0.00 0.00 0.00 4.12
3985 4341 0.551377 TAGCTCATTGGGGGTTGGGA 60.551 55.000 0.00 0.00 0.00 4.37
3986 4342 1.380380 GCTCATTGGGGGTTGGGAG 60.380 63.158 0.00 0.00 0.00 4.30
3987 4343 1.307647 CTCATTGGGGGTTGGGAGG 59.692 63.158 0.00 0.00 0.00 4.30
3988 4344 1.151474 TCATTGGGGGTTGGGAGGA 60.151 57.895 0.00 0.00 0.00 3.71
3989 4345 1.214305 TCATTGGGGGTTGGGAGGAG 61.214 60.000 0.00 0.00 0.00 3.69
3990 4346 1.165782 ATTGGGGGTTGGGAGGAGA 59.834 57.895 0.00 0.00 0.00 3.71
3991 4347 0.921256 ATTGGGGGTTGGGAGGAGAG 60.921 60.000 0.00 0.00 0.00 3.20
3992 4348 2.056099 TTGGGGGTTGGGAGGAGAGA 62.056 60.000 0.00 0.00 0.00 3.10
3993 4349 1.690985 GGGGGTTGGGAGGAGAGAG 60.691 68.421 0.00 0.00 0.00 3.20
3994 4350 1.392534 GGGGTTGGGAGGAGAGAGA 59.607 63.158 0.00 0.00 0.00 3.10
3995 4351 0.030603 GGGGTTGGGAGGAGAGAGAT 60.031 60.000 0.00 0.00 0.00 2.75
3996 4352 1.127343 GGGTTGGGAGGAGAGAGATG 58.873 60.000 0.00 0.00 0.00 2.90
3997 4353 1.127343 GGTTGGGAGGAGAGAGATGG 58.873 60.000 0.00 0.00 0.00 3.51
3998 4354 1.623834 GGTTGGGAGGAGAGAGATGGT 60.624 57.143 0.00 0.00 0.00 3.55
3999 4355 1.484240 GTTGGGAGGAGAGAGATGGTG 59.516 57.143 0.00 0.00 0.00 4.17
4000 4356 0.689080 TGGGAGGAGAGAGATGGTGC 60.689 60.000 0.00 0.00 0.00 5.01
4001 4357 1.406860 GGGAGGAGAGAGATGGTGCC 61.407 65.000 0.00 0.00 0.00 5.01
4002 4358 0.398381 GGAGGAGAGAGATGGTGCCT 60.398 60.000 0.00 0.00 0.00 4.75
4003 4359 1.494960 GAGGAGAGAGATGGTGCCTT 58.505 55.000 0.00 0.00 0.00 4.35
4004 4360 1.138661 GAGGAGAGAGATGGTGCCTTG 59.861 57.143 0.00 0.00 0.00 3.61
4005 4361 0.463474 GGAGAGAGATGGTGCCTTGC 60.463 60.000 0.00 0.00 0.00 4.01
4006 4362 0.251354 GAGAGAGATGGTGCCTTGCA 59.749 55.000 0.00 0.00 35.60 4.08
4017 4373 2.529780 TGCCTTGCACCTTTTCAATG 57.470 45.000 0.00 0.00 31.71 2.82
4018 4374 1.150827 GCCTTGCACCTTTTCAATGC 58.849 50.000 0.00 0.00 39.88 3.56
4047 4403 8.934023 TTTTACTCCACTTCATAATTTGTCCT 57.066 30.769 0.00 0.00 0.00 3.85
4051 4407 8.934023 ACTCCACTTCATAATTTGTCCTAAAA 57.066 30.769 0.00 0.00 0.00 1.52
4052 4408 9.533831 ACTCCACTTCATAATTTGTCCTAAAAT 57.466 29.630 0.00 0.00 0.00 1.82
4076 4432 9.747898 AATTTCTATATGTACACTTTTCACCCA 57.252 29.630 0.00 0.00 0.00 4.51
4077 4433 9.747898 ATTTCTATATGTACACTTTTCACCCAA 57.252 29.630 0.00 0.00 0.00 4.12
4078 4434 8.556213 TTCTATATGTACACTTTTCACCCAAC 57.444 34.615 0.00 0.00 0.00 3.77
4079 4435 7.681679 TCTATATGTACACTTTTCACCCAACA 58.318 34.615 0.00 0.00 0.00 3.33
4080 4436 6.817765 ATATGTACACTTTTCACCCAACAG 57.182 37.500 0.00 0.00 0.00 3.16
4081 4437 4.223556 TGTACACTTTTCACCCAACAGA 57.776 40.909 0.00 0.00 0.00 3.41
4082 4438 4.196193 TGTACACTTTTCACCCAACAGAG 58.804 43.478 0.00 0.00 0.00 3.35
4083 4439 2.654863 ACACTTTTCACCCAACAGAGG 58.345 47.619 0.00 0.00 0.00 3.69
4279 4641 3.498397 CGTCATTGGTTAACAGAGCTTGT 59.502 43.478 8.10 0.00 43.45 3.16
4283 4645 3.552132 TGGTTAACAGAGCTTGTGTGA 57.448 42.857 8.10 0.00 40.74 3.58
4481 4863 9.520204 AACAAAGAATGAAATTTCTGTACACTG 57.480 29.630 18.64 10.28 36.07 3.66
4511 4895 7.560991 TCATGATTATTTATGCTTTGTCCAGGT 59.439 33.333 0.00 0.00 0.00 4.00
4515 4899 5.649782 ATTTATGCTTTGTCCAGGTTCTG 57.350 39.130 0.00 0.00 0.00 3.02
4663 5047 3.512219 AGGGGTTATGTCCGTTTCAAA 57.488 42.857 0.00 0.00 0.00 2.69
4699 5083 6.768861 TGGAATTTTAGGTACCACCATATTCG 59.231 38.462 15.94 0.00 41.95 3.34
4721 5105 3.144506 AGCATATGCAGCTTCCATGTAC 58.855 45.455 28.62 0.00 45.16 2.90
4744 5128 7.454260 ACTAGCTCCTTTTGATTTAAACTGG 57.546 36.000 0.00 0.00 0.00 4.00
4788 5172 7.550551 TCGCTATACCTGTACGTAAGCTATTAT 59.449 37.037 10.48 1.44 45.62 1.28
4789 5173 8.180267 CGCTATACCTGTACGTAAGCTATTATT 58.820 37.037 10.48 0.00 45.62 1.40
4790 5174 9.286946 GCTATACCTGTACGTAAGCTATTATTG 57.713 37.037 0.00 0.00 45.62 1.90
4811 5195 4.763073 TGTATGGATCTTTCTGCACTCTG 58.237 43.478 0.00 0.00 0.00 3.35
4843 5227 6.683090 TGTTAAAAATGCGCAATAGTTCAC 57.317 33.333 17.11 8.83 0.00 3.18
5047 5434 5.321102 ACTCATGCTATACTGCTAGCTAGT 58.679 41.667 21.62 18.45 43.68 2.57
5050 5437 5.883115 TCATGCTATACTGCTAGCTAGTAGG 59.117 44.000 33.47 20.86 43.68 3.18
5278 5753 4.042398 CCTAATACATCGTGTTGGAGACG 58.958 47.826 0.00 0.00 38.20 4.18
5367 5842 7.971168 CACTACTGTGGTTTTTGTGAATAAACA 59.029 33.333 0.00 0.00 40.33 2.83
5392 5867 9.486497 CATTACTTCTGTGAACAGCTCATATAT 57.514 33.333 5.55 0.00 43.46 0.86
5686 6170 3.885976 TGTCTAGCCCATCTACTAGCT 57.114 47.619 0.00 0.00 36.60 3.32
5723 6207 6.156519 CAGTACCTGTTTCCTTATTTTTGGC 58.843 40.000 0.00 0.00 0.00 4.52
5832 6316 1.520787 GATCGACGCCGGGTTGAAT 60.521 57.895 14.63 6.20 42.31 2.57
5889 6373 1.226575 CGATCGCTACTTCGGCACA 60.227 57.895 0.26 0.00 0.00 4.57
5898 6382 3.428999 GCTACTTCGGCACAGACTAATCA 60.429 47.826 0.00 0.00 0.00 2.57
5902 6386 2.375146 TCGGCACAGACTAATCAGCTA 58.625 47.619 0.00 0.00 0.00 3.32
5903 6387 2.099263 TCGGCACAGACTAATCAGCTAC 59.901 50.000 0.00 0.00 0.00 3.58
5905 6389 2.168521 GGCACAGACTAATCAGCTACCA 59.831 50.000 0.00 0.00 0.00 3.25
6003 6487 3.071206 GGCAGAGTGGAGCGGAGA 61.071 66.667 0.00 0.00 0.00 3.71
6091 6578 3.695830 TGGGTAAGCTAGACACTTTGG 57.304 47.619 0.00 0.00 0.00 3.28
6167 6655 5.278660 CCTTGCATGATAATAACTTGCTCCC 60.279 44.000 0.00 0.00 38.58 4.30
6169 6657 3.189287 GCATGATAATAACTTGCTCCCCG 59.811 47.826 0.00 0.00 36.15 5.73
6178 6666 1.077787 TTGCTCCCCGGCAGTTATG 60.078 57.895 0.00 0.00 43.39 1.90
6220 6709 1.304381 GCCTTGGATTGTGGGCTCA 60.304 57.895 0.00 0.00 41.20 4.26
6312 6801 5.688823 TGAAGCATCAAGAATACACAAACG 58.311 37.500 0.00 0.00 30.99 3.60
6324 7481 2.235016 ACACAAACGCAATGGGTACAT 58.765 42.857 2.68 0.00 39.54 2.29
6350 7507 2.891580 GGTCTCCGCATAGTTAGGATGA 59.108 50.000 0.00 0.00 33.04 2.92
6357 7514 4.816385 CCGCATAGTTAGGATGAACACAAT 59.184 41.667 0.00 0.00 0.00 2.71
6377 7534 9.177608 ACACAATACACATACATAAGAAAGCAT 57.822 29.630 0.00 0.00 0.00 3.79
6382 7539 5.294306 ACACATACATAAGAAAGCATGTCGG 59.706 40.000 0.00 0.00 36.74 4.79
6439 7596 8.974060 TGTGTAGGTCAGTAAAAAGAGAATTT 57.026 30.769 0.00 0.00 0.00 1.82
6473 7630 6.183360 ACCAAAACAATCAAGTACACAATCGT 60.183 34.615 0.00 0.00 0.00 3.73
6474 7631 6.695278 CCAAAACAATCAAGTACACAATCGTT 59.305 34.615 0.00 0.00 0.00 3.85
6478 7635 7.667043 ACAATCAAGTACACAATCGTTGTAT 57.333 32.000 0.00 0.00 43.23 2.29
6494 7651 5.076765 CGTTGTATTGTAACAATGACCGTG 58.923 41.667 0.00 0.00 45.29 4.94
6524 7681 1.889545 TCATTTCATGACACCACGCA 58.110 45.000 0.00 0.00 33.59 5.24
6544 7701 2.961526 GACGAGGGTCTTCAATAGCA 57.038 50.000 0.00 0.00 40.15 3.49
6545 7702 3.247006 GACGAGGGTCTTCAATAGCAA 57.753 47.619 0.00 0.00 40.15 3.91
6546 7703 2.930682 GACGAGGGTCTTCAATAGCAAC 59.069 50.000 0.00 0.00 40.15 4.17
6547 7704 2.301870 ACGAGGGTCTTCAATAGCAACA 59.698 45.455 0.00 0.00 0.00 3.33
6548 7705 2.673368 CGAGGGTCTTCAATAGCAACAC 59.327 50.000 0.00 0.00 0.00 3.32
6549 7706 2.673368 GAGGGTCTTCAATAGCAACACG 59.327 50.000 0.00 0.00 0.00 4.49
6550 7707 2.038557 AGGGTCTTCAATAGCAACACGT 59.961 45.455 0.00 0.00 0.00 4.49
6551 7708 2.159627 GGGTCTTCAATAGCAACACGTG 59.840 50.000 15.48 15.48 0.00 4.49
6552 7709 2.806244 GGTCTTCAATAGCAACACGTGT 59.194 45.455 17.22 17.22 0.00 4.49
6553 7710 3.250040 GGTCTTCAATAGCAACACGTGTT 59.750 43.478 27.70 27.70 39.12 3.32
6565 7722 3.955771 ACACGTGTTGTAACAATGACC 57.044 42.857 17.22 0.00 41.21 4.02
6566 7723 2.285756 ACACGTGTTGTAACAATGACCG 59.714 45.455 17.22 9.21 41.21 4.79
6567 7724 2.285756 CACGTGTTGTAACAATGACCGT 59.714 45.455 7.58 2.21 41.21 4.83
6568 7725 2.285756 ACGTGTTGTAACAATGACCGTG 59.714 45.455 8.79 0.00 41.21 4.94
6569 7726 2.285756 CGTGTTGTAACAATGACCGTGT 59.714 45.455 0.00 0.00 41.21 4.49
6570 7727 3.602946 CGTGTTGTAACAATGACCGTGTC 60.603 47.826 0.00 0.00 41.21 3.67
6571 7728 3.558418 GTGTTGTAACAATGACCGTGTCT 59.442 43.478 0.00 0.00 41.21 3.41
6572 7729 4.746115 GTGTTGTAACAATGACCGTGTCTA 59.254 41.667 0.00 0.00 41.21 2.59
6573 7730 4.746115 TGTTGTAACAATGACCGTGTCTAC 59.254 41.667 0.00 1.39 35.67 2.59
6574 7731 4.587584 TGTAACAATGACCGTGTCTACA 57.412 40.909 5.77 3.46 33.15 2.74
6575 7732 4.300803 TGTAACAATGACCGTGTCTACAC 58.699 43.478 3.08 3.08 43.15 2.90
6576 7733 3.746045 AACAATGACCGTGTCTACACT 57.254 42.857 11.22 0.00 44.34 3.55
6577 7734 4.859304 AACAATGACCGTGTCTACACTA 57.141 40.909 11.22 0.00 44.34 2.74
6578 7735 4.859304 ACAATGACCGTGTCTACACTAA 57.141 40.909 11.22 0.00 44.34 2.24
6579 7736 5.401531 ACAATGACCGTGTCTACACTAAT 57.598 39.130 11.22 0.00 44.34 1.73
6580 7737 5.408356 ACAATGACCGTGTCTACACTAATC 58.592 41.667 11.22 6.52 44.34 1.75
6581 7738 5.047590 ACAATGACCGTGTCTACACTAATCA 60.048 40.000 11.22 11.15 44.34 2.57
6582 7739 5.854010 ATGACCGTGTCTACACTAATCAT 57.146 39.130 11.22 12.62 44.34 2.45
6583 7740 5.654603 TGACCGTGTCTACACTAATCATT 57.345 39.130 11.22 0.00 44.34 2.57
6584 7741 6.032956 TGACCGTGTCTACACTAATCATTT 57.967 37.500 11.22 0.00 44.34 2.32
6585 7742 6.097356 TGACCGTGTCTACACTAATCATTTC 58.903 40.000 11.22 0.00 44.34 2.17
6586 7743 6.032956 ACCGTGTCTACACTAATCATTTCA 57.967 37.500 11.22 0.00 44.34 2.69
6587 7744 6.640518 ACCGTGTCTACACTAATCATTTCAT 58.359 36.000 11.22 0.00 44.34 2.57
6588 7745 6.535150 ACCGTGTCTACACTAATCATTTCATG 59.465 38.462 11.22 0.00 44.34 3.07
6589 7746 6.756542 CCGTGTCTACACTAATCATTTCATGA 59.243 38.462 11.22 0.00 44.34 3.07
6590 7747 7.254117 CCGTGTCTACACTAATCATTTCATGAC 60.254 40.741 11.22 0.00 44.34 3.06
6591 7748 7.275560 CGTGTCTACACTAATCATTTCATGACA 59.724 37.037 11.22 0.00 44.34 3.58
6592 7749 8.383619 GTGTCTACACTAATCATTTCATGACAC 58.616 37.037 5.99 0.00 41.80 3.67
6593 7750 7.549134 TGTCTACACTAATCATTTCATGACACC 59.451 37.037 0.00 0.00 43.01 4.16
6594 7751 7.549134 GTCTACACTAATCATTTCATGACACCA 59.451 37.037 0.00 0.00 43.01 4.17
6595 7752 6.500684 ACACTAATCATTTCATGACACCAC 57.499 37.500 0.00 0.00 43.01 4.16
6596 7753 5.122239 ACACTAATCATTTCATGACACCACG 59.878 40.000 0.00 0.00 43.01 4.94
6597 7754 3.492421 AATCATTTCATGACACCACGC 57.508 42.857 0.00 0.00 43.01 5.34
6598 7755 1.889545 TCATTTCATGACACCACGCA 58.110 45.000 0.00 0.00 33.59 5.24
6599 7756 1.805943 TCATTTCATGACACCACGCAG 59.194 47.619 0.00 0.00 33.59 5.18
6600 7757 1.805943 CATTTCATGACACCACGCAGA 59.194 47.619 0.00 0.00 0.00 4.26
6601 7758 1.225855 TTTCATGACACCACGCAGAC 58.774 50.000 0.00 0.00 0.00 3.51
6603 7760 1.372872 CATGACACCACGCAGACGA 60.373 57.895 0.00 0.00 43.93 4.20
6604 7761 1.080501 ATGACACCACGCAGACGAG 60.081 57.895 0.00 0.00 43.93 4.18
6651 7808 2.669781 GGGATGGAATCTCAATTGCCA 58.330 47.619 0.00 2.17 45.51 4.92
6655 7812 0.101219 GGAATCTCAATTGCCACCGC 59.899 55.000 0.00 0.00 0.00 5.68
6671 7828 4.084013 GCCACCGCTATATATGTGAACAAC 60.084 45.833 0.00 0.00 0.00 3.32
6684 7841 3.926527 TGTGAACAACGAGATATGAGCAC 59.073 43.478 0.00 0.00 0.00 4.40
6728 7885 4.711399 CTCATGAGTTATGCCATGAAGGA 58.289 43.478 14.95 0.00 45.68 3.36
6748 7905 4.892345 AGGATCGATGTCTTGAGAGAATGA 59.108 41.667 0.54 0.00 32.66 2.57
6759 7916 9.650539 TGTCTTGAGAGAATGATTAAAGAGAAG 57.349 33.333 0.00 0.00 32.66 2.85
6868 8055 4.771590 GAAGAATTCATTGTGCCACTCA 57.228 40.909 8.44 0.00 46.62 3.41
6869 8056 5.125100 GAAGAATTCATTGTGCCACTCAA 57.875 39.130 8.44 0.00 46.62 3.02
6870 8057 5.717119 GAAGAATTCATTGTGCCACTCAAT 58.283 37.500 8.44 0.00 46.62 2.57
6871 8058 6.839124 AAGAATTCATTGTGCCACTCAATA 57.161 33.333 8.44 0.00 34.34 1.90
6872 8059 6.839124 AGAATTCATTGTGCCACTCAATAA 57.161 33.333 8.44 0.00 34.34 1.40
6873 8060 7.230849 AGAATTCATTGTGCCACTCAATAAA 57.769 32.000 8.44 0.00 34.34 1.40
6874 8061 7.844009 AGAATTCATTGTGCCACTCAATAAAT 58.156 30.769 8.44 0.00 34.34 1.40
6875 8062 8.316214 AGAATTCATTGTGCCACTCAATAAATT 58.684 29.630 8.44 4.11 36.45 1.82
6876 8063 7.837202 ATTCATTGTGCCACTCAATAAATTG 57.163 32.000 0.00 0.00 39.10 2.32
6877 8064 6.343716 TCATTGTGCCACTCAATAAATTGT 57.656 33.333 0.00 0.00 38.84 2.71
6878 8065 6.157904 TCATTGTGCCACTCAATAAATTGTG 58.842 36.000 0.00 3.33 38.84 3.33
6879 8066 5.781210 TTGTGCCACTCAATAAATTGTGA 57.219 34.783 10.76 0.00 38.84 3.58
6880 8067 5.981088 TGTGCCACTCAATAAATTGTGAT 57.019 34.783 10.76 0.00 38.84 3.06
6881 8068 7.459795 TTGTGCCACTCAATAAATTGTGATA 57.540 32.000 10.76 0.00 38.84 2.15
6882 8069 7.087409 TGTGCCACTCAATAAATTGTGATAG 57.913 36.000 10.76 0.96 38.84 2.08
6883 8070 6.883756 TGTGCCACTCAATAAATTGTGATAGA 59.116 34.615 10.76 0.00 38.84 1.98
6884 8071 7.392953 TGTGCCACTCAATAAATTGTGATAGAA 59.607 33.333 10.76 0.00 38.84 2.10
6885 8072 8.408601 GTGCCACTCAATAAATTGTGATAGAAT 58.591 33.333 10.76 0.00 38.84 2.40
6886 8073 9.625747 TGCCACTCAATAAATTGTGATAGAATA 57.374 29.630 10.76 0.00 38.84 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.289010 GGGCAGCACTACAAAAGCATTT 60.289 45.455 0.00 0.00 42.41 2.32
3 4 1.273327 GGGCAGCACTACAAAAGCATT 59.727 47.619 0.00 0.00 0.00 3.56
4 5 0.890683 GGGCAGCACTACAAAAGCAT 59.109 50.000 0.00 0.00 0.00 3.79
5 6 1.178534 GGGGCAGCACTACAAAAGCA 61.179 55.000 0.00 0.00 0.00 3.91
6 7 0.895559 AGGGGCAGCACTACAAAAGC 60.896 55.000 0.00 0.00 0.00 3.51
7 8 1.270550 CAAGGGGCAGCACTACAAAAG 59.729 52.381 0.00 0.00 0.00 2.27
66 67 0.033920 TGCACGTCTGAGTCAATGCT 59.966 50.000 15.39 0.00 34.18 3.79
82 83 3.871248 CTGCTGGCTCTGTCGTGCA 62.871 63.158 0.00 0.00 0.00 4.57
101 102 5.575957 CGTAGCCAGACGAATAAGTTTAGA 58.424 41.667 0.00 0.00 45.82 2.10
144 145 4.913784 AGGGGTCGCTTTAACTTATCAAA 58.086 39.130 0.00 0.00 0.00 2.69
175 186 3.554324 TCTCCGAGAAAACGAAAACTGTG 59.446 43.478 0.00 0.00 35.09 3.66
177 188 3.802685 ACTCTCCGAGAAAACGAAAACTG 59.197 43.478 0.00 0.00 33.32 3.16
190 201 9.004146 GTTTAAAAAGTACGTATACTCTCCGAG 57.996 37.037 0.00 0.00 41.00 4.63
194 205 7.220875 CCCCGTTTAAAAAGTACGTATACTCTC 59.779 40.741 0.00 0.00 41.00 3.20
268 279 7.308830 GCAAGAAAGAAACAAGGAGTATGATGT 60.309 37.037 0.00 0.00 0.00 3.06
270 281 6.151817 GGCAAGAAAGAAACAAGGAGTATGAT 59.848 38.462 0.00 0.00 0.00 2.45
281 298 2.627699 GGACCATGGCAAGAAAGAAACA 59.372 45.455 13.04 0.00 0.00 2.83
290 307 1.492176 AGTGGATAGGACCATGGCAAG 59.508 52.381 13.04 0.00 42.17 4.01
310 327 4.687215 GACTGCTGGCGCTGTGGA 62.687 66.667 7.64 0.00 46.51 4.02
319 336 3.437642 TTTTTCTGGGGACTGCTGG 57.562 52.632 0.00 0.00 0.00 4.85
338 356 4.454504 CAGTAATAAACAACGACTTGCCCT 59.545 41.667 0.00 0.00 0.00 5.19
340 358 4.719040 CCAGTAATAAACAACGACTTGCC 58.281 43.478 0.00 0.00 0.00 4.52
342 360 5.382303 CAGCCAGTAATAAACAACGACTTG 58.618 41.667 0.00 0.00 0.00 3.16
343 361 4.454504 CCAGCCAGTAATAAACAACGACTT 59.545 41.667 0.00 0.00 0.00 3.01
344 362 4.000988 CCAGCCAGTAATAAACAACGACT 58.999 43.478 0.00 0.00 0.00 4.18
345 363 3.998341 TCCAGCCAGTAATAAACAACGAC 59.002 43.478 0.00 0.00 0.00 4.34
346 364 4.274602 TCCAGCCAGTAATAAACAACGA 57.725 40.909 0.00 0.00 0.00 3.85
347 365 4.214545 TGTTCCAGCCAGTAATAAACAACG 59.785 41.667 0.00 0.00 0.00 4.10
350 368 4.042311 TCCTGTTCCAGCCAGTAATAAACA 59.958 41.667 0.00 0.00 0.00 2.83
354 372 3.706594 CTCTCCTGTTCCAGCCAGTAATA 59.293 47.826 0.00 0.00 0.00 0.98
355 373 2.503356 CTCTCCTGTTCCAGCCAGTAAT 59.497 50.000 0.00 0.00 0.00 1.89
383 401 3.124921 GGCATCGTGGTTCGTGGG 61.125 66.667 0.00 0.00 40.80 4.61
448 467 3.741476 CCGCTGCTGCCTTGGTTC 61.741 66.667 10.24 0.00 35.36 3.62
460 479 2.128853 AACGCCATGTTTGACCGCTG 62.129 55.000 0.00 0.00 37.59 5.18
477 525 4.266976 ACTCGTATGCAGTGCGTAATAAAC 59.733 41.667 18.49 7.79 37.22 2.01
478 526 4.426416 ACTCGTATGCAGTGCGTAATAAA 58.574 39.130 18.49 4.23 37.22 1.40
479 527 4.036567 ACTCGTATGCAGTGCGTAATAA 57.963 40.909 18.49 6.52 37.22 1.40
480 528 3.549423 GGACTCGTATGCAGTGCGTAATA 60.549 47.826 18.49 8.84 37.22 0.98
481 529 2.460918 GACTCGTATGCAGTGCGTAAT 58.539 47.619 18.49 5.14 37.22 1.89
482 530 1.468565 GGACTCGTATGCAGTGCGTAA 60.469 52.381 18.49 3.68 37.22 3.18
483 531 0.099968 GGACTCGTATGCAGTGCGTA 59.900 55.000 13.12 13.12 37.22 4.42
485 533 1.153842 TGGACTCGTATGCAGTGCG 60.154 57.895 11.20 0.00 35.06 5.34
486 534 0.389817 TGTGGACTCGTATGCAGTGC 60.390 55.000 8.58 8.58 33.03 4.40
487 535 1.336795 TGTGTGGACTCGTATGCAGTG 60.337 52.381 0.00 0.00 0.00 3.66
489 537 1.067565 ACTGTGTGGACTCGTATGCAG 60.068 52.381 0.00 0.00 0.00 4.41
490 538 0.966179 ACTGTGTGGACTCGTATGCA 59.034 50.000 0.00 0.00 0.00 3.96
491 539 2.933495 TACTGTGTGGACTCGTATGC 57.067 50.000 0.00 0.00 0.00 3.14
492 540 4.632538 TGATACTGTGTGGACTCGTATG 57.367 45.455 0.00 0.00 0.00 2.39
494 542 3.181490 GCATGATACTGTGTGGACTCGTA 60.181 47.826 0.00 0.00 0.00 3.43
495 543 2.417379 GCATGATACTGTGTGGACTCGT 60.417 50.000 0.00 0.00 0.00 4.18
496 544 2.196749 GCATGATACTGTGTGGACTCG 58.803 52.381 0.00 0.00 0.00 4.18
497 545 2.159240 TCGCATGATACTGTGTGGACTC 60.159 50.000 0.00 0.00 0.00 3.36
498 546 1.824852 TCGCATGATACTGTGTGGACT 59.175 47.619 0.00 0.00 0.00 3.85
499 547 2.196749 CTCGCATGATACTGTGTGGAC 58.803 52.381 0.00 0.00 0.00 4.02
500 548 1.471501 GCTCGCATGATACTGTGTGGA 60.472 52.381 0.00 0.00 0.00 4.02
501 549 0.933097 GCTCGCATGATACTGTGTGG 59.067 55.000 0.00 0.00 0.00 4.17
502 550 1.643880 TGCTCGCATGATACTGTGTG 58.356 50.000 0.00 0.00 0.00 3.82
503 551 2.609427 ATGCTCGCATGATACTGTGT 57.391 45.000 3.18 0.00 35.03 3.72
504 552 2.867975 TGAATGCTCGCATGATACTGTG 59.132 45.455 4.99 0.00 36.68 3.66
505 553 3.183793 TGAATGCTCGCATGATACTGT 57.816 42.857 4.99 0.00 36.68 3.55
506 554 4.524749 CTTTGAATGCTCGCATGATACTG 58.475 43.478 4.99 0.00 36.68 2.74
507 555 3.003068 GCTTTGAATGCTCGCATGATACT 59.997 43.478 4.99 0.00 36.68 2.12
508 556 3.242837 TGCTTTGAATGCTCGCATGATAC 60.243 43.478 4.99 0.00 36.68 2.24
510 558 1.746787 TGCTTTGAATGCTCGCATGAT 59.253 42.857 4.99 0.00 36.68 2.45
511 559 1.166989 TGCTTTGAATGCTCGCATGA 58.833 45.000 4.99 0.00 36.68 3.07
514 562 2.684374 ACATATGCTTTGAATGCTCGCA 59.316 40.909 1.58 0.00 34.83 5.10
531 579 5.105797 CCATTTCTACCAAAGCTTGCACATA 60.106 40.000 0.00 0.00 0.00 2.29
533 581 3.005684 CCATTTCTACCAAAGCTTGCACA 59.994 43.478 0.00 0.00 0.00 4.57
535 583 3.495331 TCCATTTCTACCAAAGCTTGCA 58.505 40.909 0.00 0.00 0.00 4.08
536 584 4.519540 TTCCATTTCTACCAAAGCTTGC 57.480 40.909 0.00 0.00 0.00 4.01
540 588 4.759516 TCGTTTCCATTTCTACCAAAGC 57.240 40.909 0.00 0.00 0.00 3.51
560 614 7.493645 CCCAATTTGCTCTCTTTTATTTCCATC 59.506 37.037 0.00 0.00 0.00 3.51
562 616 6.496565 TCCCAATTTGCTCTCTTTTATTTCCA 59.503 34.615 0.00 0.00 0.00 3.53
584 652 0.106419 TGGTCCTGTTTGGTGTTCCC 60.106 55.000 0.00 0.00 37.07 3.97
607 675 2.416836 GCAGGCGGAAAATAAAAGGGAC 60.417 50.000 0.00 0.00 0.00 4.46
615 684 2.031258 TGATTCGCAGGCGGAAAATA 57.969 45.000 14.24 0.00 40.25 1.40
616 685 1.135402 GTTGATTCGCAGGCGGAAAAT 60.135 47.619 14.24 6.32 40.25 1.82
620 689 1.741401 CTGTTGATTCGCAGGCGGA 60.741 57.895 14.24 5.25 40.25 5.54
632 702 0.471780 TGCTGGTCCTCTCCTGTTGA 60.472 55.000 0.00 0.00 0.00 3.18
721 791 4.999939 GTTTGGCCGTGCGCAAGG 63.000 66.667 34.25 34.25 40.31 3.61
722 792 4.999939 GGTTTGGCCGTGCGCAAG 63.000 66.667 14.00 15.67 40.31 4.01
731 801 2.265904 GGTTCACGGAGGTTTGGCC 61.266 63.158 0.00 0.00 37.58 5.36
732 802 2.265904 GGGTTCACGGAGGTTTGGC 61.266 63.158 0.00 0.00 0.00 4.52
735 839 0.533531 GAACGGGTTCACGGAGGTTT 60.534 55.000 6.68 0.00 39.31 3.27
746 850 1.301953 GGCGTACCAAGAACGGGTT 60.302 57.895 0.00 0.00 40.64 4.11
750 854 2.090524 GGACGGCGTACCAAGAACG 61.091 63.158 14.74 0.00 43.12 3.95
751 855 1.005867 TGGACGGCGTACCAAGAAC 60.006 57.895 21.30 0.53 34.57 3.01
858 974 4.016706 GGACAGGGACGTGGTGGG 62.017 72.222 0.00 0.00 0.00 4.61
871 987 4.348495 GGTGGGGGAGGGAGGACA 62.348 72.222 0.00 0.00 0.00 4.02
995 1111 2.052690 AGGACGTCCTCCATCGGTG 61.053 63.158 31.69 0.00 44.77 4.94
1170 1295 1.268234 GGTACCGTACCGATCACGAAG 60.268 57.143 12.01 0.00 41.91 3.79
1250 1375 4.867608 TGAAAAACGAAGCAAAAAGGAAGG 59.132 37.500 0.00 0.00 0.00 3.46
1255 1380 5.447144 CCCCTTTGAAAAACGAAGCAAAAAG 60.447 40.000 0.00 0.00 38.36 2.27
1257 1382 3.935828 CCCCTTTGAAAAACGAAGCAAAA 59.064 39.130 0.00 0.00 38.36 2.44
1258 1383 3.055747 ACCCCTTTGAAAAACGAAGCAAA 60.056 39.130 0.00 0.00 38.36 3.68
1261 1386 2.159156 ACACCCCTTTGAAAAACGAAGC 60.159 45.455 0.00 0.00 38.36 3.86
1262 1387 3.443976 CACACCCCTTTGAAAAACGAAG 58.556 45.455 0.00 0.00 39.14 3.79
1263 1388 2.417515 GCACACCCCTTTGAAAAACGAA 60.418 45.455 0.00 0.00 0.00 3.85
1264 1389 1.135333 GCACACCCCTTTGAAAAACGA 59.865 47.619 0.00 0.00 0.00 3.85
1265 1390 1.566404 GCACACCCCTTTGAAAAACG 58.434 50.000 0.00 0.00 0.00 3.60
1266 1391 1.566404 CGCACACCCCTTTGAAAAAC 58.434 50.000 0.00 0.00 0.00 2.43
1267 1392 0.461961 CCGCACACCCCTTTGAAAAA 59.538 50.000 0.00 0.00 0.00 1.94
1469 1652 1.070843 CAAACGTCACAAGCACTACGG 60.071 52.381 0.00 0.00 39.57 4.02
1470 1653 1.591158 ACAAACGTCACAAGCACTACG 59.409 47.619 0.00 0.00 40.99 3.51
1632 1817 3.611970 GACTAGGACACTGACAGCTAGA 58.388 50.000 16.98 0.00 0.00 2.43
1650 1835 2.157738 GCTATACGGGGTATGACGACT 58.842 52.381 0.00 0.00 30.79 4.18
1888 2080 3.305720 AGAAGGCATAGGTATCCGTCAA 58.694 45.455 0.00 0.00 32.05 3.18
1894 2086 5.049612 GCGGTAAAAAGAAGGCATAGGTATC 60.050 44.000 0.00 0.00 0.00 2.24
1896 2088 4.193865 GCGGTAAAAAGAAGGCATAGGTA 58.806 43.478 0.00 0.00 0.00 3.08
1898 2090 2.031683 CGCGGTAAAAAGAAGGCATAGG 59.968 50.000 0.00 0.00 0.00 2.57
2003 2195 3.009473 TCTTTAGCTTTCCCATGCACTCT 59.991 43.478 0.00 0.00 0.00 3.24
2239 2431 4.159135 GCCTTTCATGTCACCATTTCATCT 59.841 41.667 0.00 0.00 0.00 2.90
2240 2432 4.082081 TGCCTTTCATGTCACCATTTCATC 60.082 41.667 0.00 0.00 0.00 2.92
2241 2433 3.833650 TGCCTTTCATGTCACCATTTCAT 59.166 39.130 0.00 0.00 0.00 2.57
2242 2434 3.229293 TGCCTTTCATGTCACCATTTCA 58.771 40.909 0.00 0.00 0.00 2.69
2243 2435 3.940209 TGCCTTTCATGTCACCATTTC 57.060 42.857 0.00 0.00 0.00 2.17
2320 2513 3.960571 ACAGCAGATCATTAGCACCTTT 58.039 40.909 0.00 0.00 0.00 3.11
2362 2555 8.808529 CGTGTTCTTCTACAGATTAACAATAGG 58.191 37.037 7.91 0.00 33.66 2.57
2397 2590 6.690957 ACAACACTAAACATCATTGTTCAACG 59.309 34.615 0.00 0.00 45.30 4.10
2413 2606 3.275617 ACAGAGCACCAACAACACTAA 57.724 42.857 0.00 0.00 0.00 2.24
2436 2629 3.859386 GGCTTGAATTAAGAAACGGCATG 59.141 43.478 0.00 0.00 38.76 4.06
2565 2758 7.779326 ACCCTTTGATCATGAAAAACCAAAATT 59.221 29.630 0.00 0.00 0.00 1.82
2885 3078 1.373497 GCAGACGAGACTGGTGGTG 60.373 63.158 0.00 0.00 38.22 4.17
2932 3125 9.172060 AGCCTAGGGAGTTAATATACTTGAATT 57.828 33.333 11.72 0.00 0.00 2.17
2955 3149 0.675633 ATGCCTTGTGTGTTGAAGCC 59.324 50.000 0.00 0.00 0.00 4.35
3038 3232 1.299541 ATACTTCATTTCTGGCCGCG 58.700 50.000 0.00 0.00 0.00 6.46
3208 3562 1.689273 ACATGGTTATCTCCTCCTCGC 59.311 52.381 0.00 0.00 0.00 5.03
3268 3622 4.758692 CACAAGTCGTGCTGTCCT 57.241 55.556 0.00 0.00 39.19 3.85
3307 3661 3.741344 CCTGGAAAGTTGTCTGAACTACG 59.259 47.826 0.00 0.00 36.42 3.51
3367 3721 6.369065 AGCTCAAGTTTGAAATCTAAGTACCG 59.631 38.462 0.00 0.00 36.64 4.02
3419 3775 2.439507 ACGAATGAGGGTATGCATTCCT 59.560 45.455 20.34 19.00 44.59 3.36
3522 3878 7.800300 ATCTAAGAAAGGACAAAGAGGTAGT 57.200 36.000 0.00 0.00 0.00 2.73
3547 3903 2.642311 TGCCACTGGACTGAAGGAATTA 59.358 45.455 0.00 0.00 0.00 1.40
3584 3940 9.871238 AGTAAACAGTCGACTACATTTATGAAT 57.129 29.630 19.57 8.39 0.00 2.57
3613 3969 8.594550 AGCAAGATATTTCCGTACCAGTAATAT 58.405 33.333 0.00 3.50 0.00 1.28
3615 3971 6.827727 AGCAAGATATTTCCGTACCAGTAAT 58.172 36.000 0.00 0.00 0.00 1.89
3729 4085 5.717654 AGAAAACAGTTAACAAAAGGGGTGA 59.282 36.000 8.61 0.00 0.00 4.02
3799 4155 4.728110 TCTTCCCGGACGGAGCGA 62.728 66.667 13.13 2.20 43.39 4.93
3800 4156 4.194720 CTCTTCCCGGACGGAGCG 62.195 72.222 13.13 0.00 43.39 5.03
3801 4157 3.069318 ACTCTTCCCGGACGGAGC 61.069 66.667 13.13 0.00 43.39 4.70
3802 4158 0.679002 TACACTCTTCCCGGACGGAG 60.679 60.000 13.13 9.50 43.39 4.63
3803 4159 0.962356 GTACACTCTTCCCGGACGGA 60.962 60.000 13.13 0.00 39.68 4.69
3804 4160 1.246056 TGTACACTCTTCCCGGACGG 61.246 60.000 0.73 3.25 0.00 4.79
3805 4161 0.815734 ATGTACACTCTTCCCGGACG 59.184 55.000 0.73 0.00 0.00 4.79
3806 4162 3.329929 AAATGTACACTCTTCCCGGAC 57.670 47.619 0.73 0.00 0.00 4.79
3807 4163 3.118884 GCTAAATGTACACTCTTCCCGGA 60.119 47.826 0.73 0.00 0.00 5.14
3808 4164 3.118738 AGCTAAATGTACACTCTTCCCGG 60.119 47.826 0.00 0.00 0.00 5.73
3809 4165 4.124851 AGCTAAATGTACACTCTTCCCG 57.875 45.455 0.00 0.00 0.00 5.14
3810 4166 7.916914 TTAAAGCTAAATGTACACTCTTCCC 57.083 36.000 0.00 0.00 0.00 3.97
3820 4176 9.400638 CGTGGACAAATTTTAAAGCTAAATGTA 57.599 29.630 0.00 0.00 0.00 2.29
3821 4177 8.138712 TCGTGGACAAATTTTAAAGCTAAATGT 58.861 29.630 0.00 0.00 0.00 2.71
3822 4178 8.514136 TCGTGGACAAATTTTAAAGCTAAATG 57.486 30.769 0.00 0.00 0.00 2.32
3823 4179 9.535878 TTTCGTGGACAAATTTTAAAGCTAAAT 57.464 25.926 0.00 0.00 0.00 1.40
3824 4180 8.928270 TTTCGTGGACAAATTTTAAAGCTAAA 57.072 26.923 0.00 0.00 0.00 1.85
3825 4181 8.407064 TCTTTCGTGGACAAATTTTAAAGCTAA 58.593 29.630 0.00 0.00 0.00 3.09
3826 4182 7.932335 TCTTTCGTGGACAAATTTTAAAGCTA 58.068 30.769 0.00 0.00 0.00 3.32
3827 4183 6.801575 TCTTTCGTGGACAAATTTTAAAGCT 58.198 32.000 0.00 0.00 0.00 3.74
3828 4184 6.695713 ACTCTTTCGTGGACAAATTTTAAAGC 59.304 34.615 0.00 0.00 0.00 3.51
3829 4185 9.166126 GTACTCTTTCGTGGACAAATTTTAAAG 57.834 33.333 0.00 0.00 0.00 1.85
3830 4186 8.895737 AGTACTCTTTCGTGGACAAATTTTAAA 58.104 29.630 0.00 0.00 0.00 1.52
3831 4187 8.441312 AGTACTCTTTCGTGGACAAATTTTAA 57.559 30.769 0.00 0.00 0.00 1.52
3832 4188 8.441312 AAGTACTCTTTCGTGGACAAATTTTA 57.559 30.769 0.00 0.00 0.00 1.52
3833 4189 6.937436 AGTACTCTTTCGTGGACAAATTTT 57.063 33.333 0.00 0.00 0.00 1.82
3834 4190 6.766467 AGAAGTACTCTTTCGTGGACAAATTT 59.234 34.615 0.00 0.00 33.64 1.82
3835 4191 6.289064 AGAAGTACTCTTTCGTGGACAAATT 58.711 36.000 0.00 0.00 33.64 1.82
3836 4192 5.855045 AGAAGTACTCTTTCGTGGACAAAT 58.145 37.500 0.00 0.00 33.64 2.32
3837 4193 5.272283 AGAAGTACTCTTTCGTGGACAAA 57.728 39.130 0.00 0.00 33.64 2.83
3838 4194 4.931661 AGAAGTACTCTTTCGTGGACAA 57.068 40.909 0.00 0.00 33.64 3.18
3839 4195 6.585695 AATAGAAGTACTCTTTCGTGGACA 57.414 37.500 0.00 0.00 35.41 4.02
3840 4196 7.063191 GGAAAATAGAAGTACTCTTTCGTGGAC 59.937 40.741 0.00 0.00 35.41 4.02
3841 4197 7.095270 GGAAAATAGAAGTACTCTTTCGTGGA 58.905 38.462 0.00 0.00 35.41 4.02
3842 4198 6.313164 GGGAAAATAGAAGTACTCTTTCGTGG 59.687 42.308 0.00 0.00 35.41 4.94
3843 4199 6.872020 TGGGAAAATAGAAGTACTCTTTCGTG 59.128 38.462 0.00 0.00 35.41 4.35
3844 4200 7.001099 TGGGAAAATAGAAGTACTCTTTCGT 57.999 36.000 0.00 0.00 35.41 3.85
3845 4201 7.900782 TTGGGAAAATAGAAGTACTCTTTCG 57.099 36.000 0.00 0.00 35.41 3.46
3846 4202 8.184848 GCATTGGGAAAATAGAAGTACTCTTTC 58.815 37.037 0.00 1.41 35.41 2.62
3847 4203 7.669722 TGCATTGGGAAAATAGAAGTACTCTTT 59.330 33.333 0.00 0.00 35.41 2.52
3848 4204 7.121315 GTGCATTGGGAAAATAGAAGTACTCTT 59.879 37.037 0.00 0.00 35.41 2.85
3849 4205 6.599638 GTGCATTGGGAAAATAGAAGTACTCT 59.400 38.462 0.00 0.00 38.28 3.24
3850 4206 6.599638 AGTGCATTGGGAAAATAGAAGTACTC 59.400 38.462 0.00 0.00 0.00 2.59
3851 4207 6.485171 AGTGCATTGGGAAAATAGAAGTACT 58.515 36.000 0.00 0.00 0.00 2.73
3852 4208 6.759497 AGTGCATTGGGAAAATAGAAGTAC 57.241 37.500 0.00 0.00 0.00 2.73
3853 4209 7.775053 AAAGTGCATTGGGAAAATAGAAGTA 57.225 32.000 0.00 0.00 0.00 2.24
3854 4210 6.670695 AAAGTGCATTGGGAAAATAGAAGT 57.329 33.333 0.00 0.00 0.00 3.01
3855 4211 9.143631 CTTTAAAGTGCATTGGGAAAATAGAAG 57.856 33.333 7.07 0.00 0.00 2.85
3856 4212 8.646900 ACTTTAAAGTGCATTGGGAAAATAGAA 58.353 29.630 19.94 0.00 37.98 2.10
3857 4213 8.189119 ACTTTAAAGTGCATTGGGAAAATAGA 57.811 30.769 19.94 0.00 37.98 1.98
3887 4243 7.232127 ACCATGTGATGAGAGAGAAACATTTTT 59.768 33.333 0.00 0.00 0.00 1.94
3888 4244 6.718454 ACCATGTGATGAGAGAGAAACATTTT 59.282 34.615 0.00 0.00 0.00 1.82
3889 4245 6.243900 ACCATGTGATGAGAGAGAAACATTT 58.756 36.000 0.00 0.00 0.00 2.32
3890 4246 5.813383 ACCATGTGATGAGAGAGAAACATT 58.187 37.500 0.00 0.00 0.00 2.71
3891 4247 5.432680 ACCATGTGATGAGAGAGAAACAT 57.567 39.130 0.00 0.00 0.00 2.71
3892 4248 4.897509 ACCATGTGATGAGAGAGAAACA 57.102 40.909 0.00 0.00 0.00 2.83
3893 4249 7.044181 TGATTACCATGTGATGAGAGAGAAAC 58.956 38.462 0.00 0.00 0.00 2.78
3894 4250 7.186570 TGATTACCATGTGATGAGAGAGAAA 57.813 36.000 0.00 0.00 0.00 2.52
3895 4251 6.796785 TGATTACCATGTGATGAGAGAGAA 57.203 37.500 0.00 0.00 0.00 2.87
3896 4252 6.608808 TCTTGATTACCATGTGATGAGAGAGA 59.391 38.462 0.00 0.00 0.00 3.10
3897 4253 6.700960 GTCTTGATTACCATGTGATGAGAGAG 59.299 42.308 0.00 0.00 0.00 3.20
3898 4254 6.407412 GGTCTTGATTACCATGTGATGAGAGA 60.407 42.308 0.00 0.00 36.96 3.10
3899 4255 5.757320 GGTCTTGATTACCATGTGATGAGAG 59.243 44.000 0.00 0.00 36.96 3.20
3900 4256 5.189539 TGGTCTTGATTACCATGTGATGAGA 59.810 40.000 0.00 0.00 42.10 3.27
3901 4257 5.430886 TGGTCTTGATTACCATGTGATGAG 58.569 41.667 0.00 0.00 42.10 2.90
3902 4258 5.434182 TGGTCTTGATTACCATGTGATGA 57.566 39.130 0.00 0.00 42.10 2.92
3903 4259 6.704289 ATTGGTCTTGATTACCATGTGATG 57.296 37.500 0.00 0.00 46.16 3.07
3904 4260 7.833682 TGTTATTGGTCTTGATTACCATGTGAT 59.166 33.333 0.00 0.00 46.16 3.06
3905 4261 7.171653 TGTTATTGGTCTTGATTACCATGTGA 58.828 34.615 0.00 0.00 46.16 3.58
3906 4262 7.389803 TGTTATTGGTCTTGATTACCATGTG 57.610 36.000 0.00 0.00 46.16 3.21
3907 4263 8.593945 AATGTTATTGGTCTTGATTACCATGT 57.406 30.769 0.00 0.00 46.16 3.21
3908 4264 8.906867 AGAATGTTATTGGTCTTGATTACCATG 58.093 33.333 0.00 0.00 46.16 3.66
3910 4266 9.391006 GTAGAATGTTATTGGTCTTGATTACCA 57.609 33.333 0.00 0.00 45.26 3.25
3911 4267 9.391006 TGTAGAATGTTATTGGTCTTGATTACC 57.609 33.333 0.00 0.00 37.53 2.85
3913 4269 9.952030 TGTGTAGAATGTTATTGGTCTTGATTA 57.048 29.630 0.00 0.00 0.00 1.75
3914 4270 8.862325 TGTGTAGAATGTTATTGGTCTTGATT 57.138 30.769 0.00 0.00 0.00 2.57
3915 4271 8.896744 CATGTGTAGAATGTTATTGGTCTTGAT 58.103 33.333 0.00 0.00 0.00 2.57
3916 4272 7.336679 CCATGTGTAGAATGTTATTGGTCTTGA 59.663 37.037 0.00 0.00 0.00 3.02
3917 4273 7.121168 ACCATGTGTAGAATGTTATTGGTCTTG 59.879 37.037 0.00 0.00 0.00 3.02
3918 4274 7.175104 ACCATGTGTAGAATGTTATTGGTCTT 58.825 34.615 0.00 0.00 0.00 3.01
3919 4275 6.721318 ACCATGTGTAGAATGTTATTGGTCT 58.279 36.000 0.00 0.00 0.00 3.85
3920 4276 6.823689 AGACCATGTGTAGAATGTTATTGGTC 59.176 38.462 9.64 9.64 40.63 4.02
3921 4277 6.721318 AGACCATGTGTAGAATGTTATTGGT 58.279 36.000 0.00 0.00 0.00 3.67
3922 4278 6.260936 GGAGACCATGTGTAGAATGTTATTGG 59.739 42.308 0.00 0.00 0.00 3.16
3923 4279 7.050377 AGGAGACCATGTGTAGAATGTTATTG 58.950 38.462 0.00 0.00 0.00 1.90
3924 4280 7.200434 AGGAGACCATGTGTAGAATGTTATT 57.800 36.000 0.00 0.00 0.00 1.40
3925 4281 6.814954 AGGAGACCATGTGTAGAATGTTAT 57.185 37.500 0.00 0.00 0.00 1.89
3926 4282 6.620877 AAGGAGACCATGTGTAGAATGTTA 57.379 37.500 0.00 0.00 0.00 2.41
3927 4283 5.505181 AAGGAGACCATGTGTAGAATGTT 57.495 39.130 0.00 0.00 0.00 2.71
3928 4284 6.620877 TTAAGGAGACCATGTGTAGAATGT 57.379 37.500 0.00 0.00 0.00 2.71
3929 4285 8.511604 AAATTAAGGAGACCATGTGTAGAATG 57.488 34.615 0.00 0.00 0.00 2.67
3930 4286 9.533831 AAAAATTAAGGAGACCATGTGTAGAAT 57.466 29.630 0.00 0.00 0.00 2.40
3931 4287 8.934023 AAAAATTAAGGAGACCATGTGTAGAA 57.066 30.769 0.00 0.00 0.00 2.10
3932 4288 9.444600 GTAAAAATTAAGGAGACCATGTGTAGA 57.555 33.333 0.00 0.00 0.00 2.59
3933 4289 9.226606 TGTAAAAATTAAGGAGACCATGTGTAG 57.773 33.333 0.00 0.00 0.00 2.74
3934 4290 9.747898 ATGTAAAAATTAAGGAGACCATGTGTA 57.252 29.630 0.00 0.00 0.00 2.90
3935 4291 8.522830 CATGTAAAAATTAAGGAGACCATGTGT 58.477 33.333 0.00 0.00 0.00 3.72
3936 4292 7.489113 GCATGTAAAAATTAAGGAGACCATGTG 59.511 37.037 0.00 0.00 0.00 3.21
3937 4293 7.178274 TGCATGTAAAAATTAAGGAGACCATGT 59.822 33.333 0.00 0.00 0.00 3.21
3938 4294 7.489113 GTGCATGTAAAAATTAAGGAGACCATG 59.511 37.037 0.00 0.00 0.00 3.66
3939 4295 7.397192 AGTGCATGTAAAAATTAAGGAGACCAT 59.603 33.333 0.00 0.00 0.00 3.55
3940 4296 6.719370 AGTGCATGTAAAAATTAAGGAGACCA 59.281 34.615 0.00 0.00 0.00 4.02
3941 4297 7.158099 AGTGCATGTAAAAATTAAGGAGACC 57.842 36.000 0.00 0.00 0.00 3.85
3942 4298 9.774742 CTAAGTGCATGTAAAAATTAAGGAGAC 57.225 33.333 0.00 0.00 0.00 3.36
3943 4299 8.458843 GCTAAGTGCATGTAAAAATTAAGGAGA 58.541 33.333 0.00 0.00 42.31 3.71
3944 4300 8.462016 AGCTAAGTGCATGTAAAAATTAAGGAG 58.538 33.333 0.00 0.00 45.94 3.69
3945 4301 8.348285 AGCTAAGTGCATGTAAAAATTAAGGA 57.652 30.769 0.00 0.00 45.94 3.36
3946 4302 8.243426 TGAGCTAAGTGCATGTAAAAATTAAGG 58.757 33.333 0.00 0.00 45.94 2.69
3947 4303 9.793252 ATGAGCTAAGTGCATGTAAAAATTAAG 57.207 29.630 0.00 0.00 45.94 1.85
3949 4305 9.571810 CAATGAGCTAAGTGCATGTAAAAATTA 57.428 29.630 0.00 0.00 45.94 1.40
3950 4306 7.546667 CCAATGAGCTAAGTGCATGTAAAAATT 59.453 33.333 0.00 0.00 45.94 1.82
3951 4307 7.037438 CCAATGAGCTAAGTGCATGTAAAAAT 58.963 34.615 0.00 0.00 45.94 1.82
3952 4308 6.389091 CCAATGAGCTAAGTGCATGTAAAAA 58.611 36.000 0.00 0.00 45.94 1.94
3953 4309 5.105797 CCCAATGAGCTAAGTGCATGTAAAA 60.106 40.000 0.00 0.00 45.94 1.52
3954 4310 4.398988 CCCAATGAGCTAAGTGCATGTAAA 59.601 41.667 0.00 0.00 45.94 2.01
3955 4311 3.947196 CCCAATGAGCTAAGTGCATGTAA 59.053 43.478 0.00 0.00 45.94 2.41
3956 4312 3.544684 CCCAATGAGCTAAGTGCATGTA 58.455 45.455 0.00 0.00 45.94 2.29
3957 4313 2.372264 CCCAATGAGCTAAGTGCATGT 58.628 47.619 0.00 0.00 45.94 3.21
3958 4314 1.679680 CCCCAATGAGCTAAGTGCATG 59.320 52.381 0.00 0.00 45.94 4.06
3959 4315 1.410648 CCCCCAATGAGCTAAGTGCAT 60.411 52.381 0.00 0.00 45.94 3.96
3960 4316 0.034186 CCCCCAATGAGCTAAGTGCA 60.034 55.000 0.00 0.00 45.94 4.57
3961 4317 0.034089 ACCCCCAATGAGCTAAGTGC 60.034 55.000 0.00 0.00 43.29 4.40
3962 4318 2.094675 CAACCCCCAATGAGCTAAGTG 58.905 52.381 0.00 0.00 0.00 3.16
3963 4319 1.005924 CCAACCCCCAATGAGCTAAGT 59.994 52.381 0.00 0.00 0.00 2.24
3964 4320 1.686115 CCCAACCCCCAATGAGCTAAG 60.686 57.143 0.00 0.00 0.00 2.18
3965 4321 0.334676 CCCAACCCCCAATGAGCTAA 59.665 55.000 0.00 0.00 0.00 3.09
3966 4322 0.551377 TCCCAACCCCCAATGAGCTA 60.551 55.000 0.00 0.00 0.00 3.32
3967 4323 1.856873 TCCCAACCCCCAATGAGCT 60.857 57.895 0.00 0.00 0.00 4.09
3968 4324 1.380380 CTCCCAACCCCCAATGAGC 60.380 63.158 0.00 0.00 0.00 4.26
3969 4325 1.214305 TCCTCCCAACCCCCAATGAG 61.214 60.000 0.00 0.00 0.00 2.90
3970 4326 1.151474 TCCTCCCAACCCCCAATGA 60.151 57.895 0.00 0.00 0.00 2.57
3971 4327 1.214305 TCTCCTCCCAACCCCCAATG 61.214 60.000 0.00 0.00 0.00 2.82
3972 4328 0.921256 CTCTCCTCCCAACCCCCAAT 60.921 60.000 0.00 0.00 0.00 3.16
3973 4329 1.541368 CTCTCCTCCCAACCCCCAA 60.541 63.158 0.00 0.00 0.00 4.12
3974 4330 2.124996 CTCTCCTCCCAACCCCCA 59.875 66.667 0.00 0.00 0.00 4.96
3975 4331 1.690985 CTCTCTCCTCCCAACCCCC 60.691 68.421 0.00 0.00 0.00 5.40
3976 4332 0.030603 ATCTCTCTCCTCCCAACCCC 60.031 60.000 0.00 0.00 0.00 4.95
3977 4333 1.127343 CATCTCTCTCCTCCCAACCC 58.873 60.000 0.00 0.00 0.00 4.11
3978 4334 1.127343 CCATCTCTCTCCTCCCAACC 58.873 60.000 0.00 0.00 0.00 3.77
3979 4335 1.484240 CACCATCTCTCTCCTCCCAAC 59.516 57.143 0.00 0.00 0.00 3.77
3980 4336 1.871418 CACCATCTCTCTCCTCCCAA 58.129 55.000 0.00 0.00 0.00 4.12
3981 4337 0.689080 GCACCATCTCTCTCCTCCCA 60.689 60.000 0.00 0.00 0.00 4.37
3982 4338 1.406860 GGCACCATCTCTCTCCTCCC 61.407 65.000 0.00 0.00 0.00 4.30
3983 4339 0.398381 AGGCACCATCTCTCTCCTCC 60.398 60.000 0.00 0.00 0.00 4.30
3984 4340 1.138661 CAAGGCACCATCTCTCTCCTC 59.861 57.143 0.00 0.00 0.00 3.71
3985 4341 1.202330 CAAGGCACCATCTCTCTCCT 58.798 55.000 0.00 0.00 0.00 3.69
3986 4342 0.463474 GCAAGGCACCATCTCTCTCC 60.463 60.000 0.00 0.00 0.00 3.71
3987 4343 0.251354 TGCAAGGCACCATCTCTCTC 59.749 55.000 0.00 0.00 31.71 3.20
3988 4344 2.380365 TGCAAGGCACCATCTCTCT 58.620 52.632 0.00 0.00 31.71 3.10
3998 4354 2.529780 CATTGAAAAGGTGCAAGGCA 57.470 45.000 0.00 0.00 35.60 4.75
3999 4355 1.150827 GCATTGAAAAGGTGCAAGGC 58.849 50.000 0.00 0.00 43.14 4.35
4000 4356 2.529780 TGCATTGAAAAGGTGCAAGG 57.470 45.000 0.00 0.00 44.99 3.61
4021 4377 9.362151 AGGACAAATTATGAAGTGGAGTAAAAA 57.638 29.630 0.00 0.00 0.00 1.94
4022 4378 8.934023 AGGACAAATTATGAAGTGGAGTAAAA 57.066 30.769 0.00 0.00 0.00 1.52
4026 4382 8.934023 TTTTAGGACAAATTATGAAGTGGAGT 57.066 30.769 0.00 0.00 0.00 3.85
4050 4406 9.747898 TGGGTGAAAAGTGTACATATAGAAATT 57.252 29.630 0.00 0.00 0.00 1.82
4051 4407 9.747898 TTGGGTGAAAAGTGTACATATAGAAAT 57.252 29.630 0.00 0.00 0.00 2.17
4052 4408 9.005777 GTTGGGTGAAAAGTGTACATATAGAAA 57.994 33.333 0.00 0.00 0.00 2.52
4053 4409 8.158132 TGTTGGGTGAAAAGTGTACATATAGAA 58.842 33.333 0.00 0.00 0.00 2.10
4054 4410 7.681679 TGTTGGGTGAAAAGTGTACATATAGA 58.318 34.615 0.00 0.00 0.00 1.98
4055 4411 7.822334 TCTGTTGGGTGAAAAGTGTACATATAG 59.178 37.037 0.00 0.00 0.00 1.31
4056 4412 7.681679 TCTGTTGGGTGAAAAGTGTACATATA 58.318 34.615 0.00 0.00 0.00 0.86
4057 4413 6.539173 TCTGTTGGGTGAAAAGTGTACATAT 58.461 36.000 0.00 0.00 0.00 1.78
4058 4414 5.931294 TCTGTTGGGTGAAAAGTGTACATA 58.069 37.500 0.00 0.00 0.00 2.29
4059 4415 4.787551 TCTGTTGGGTGAAAAGTGTACAT 58.212 39.130 0.00 0.00 0.00 2.29
4060 4416 4.196193 CTCTGTTGGGTGAAAAGTGTACA 58.804 43.478 0.00 0.00 0.00 2.90
4061 4417 3.564225 CCTCTGTTGGGTGAAAAGTGTAC 59.436 47.826 0.00 0.00 0.00 2.90
4062 4418 3.434453 CCCTCTGTTGGGTGAAAAGTGTA 60.434 47.826 0.00 0.00 42.25 2.90
4063 4419 2.654863 CCTCTGTTGGGTGAAAAGTGT 58.345 47.619 0.00 0.00 0.00 3.55
4064 4420 1.956477 CCCTCTGTTGGGTGAAAAGTG 59.044 52.381 0.00 0.00 42.25 3.16
4065 4421 2.364972 CCCTCTGTTGGGTGAAAAGT 57.635 50.000 0.00 0.00 42.25 2.66
4072 4428 6.856180 ACAGATGTACTCCCTCTGTTGGGT 62.856 50.000 12.25 0.00 45.49 4.51
4073 4429 4.390083 ACAGATGTACTCCCTCTGTTGGG 61.390 52.174 12.25 0.00 45.49 4.12
4074 4430 2.834549 ACAGATGTACTCCCTCTGTTGG 59.165 50.000 12.25 0.00 45.49 3.77
4078 4434 9.838339 ATAATTTAAACAGATGTACTCCCTCTG 57.162 33.333 11.32 11.32 41.69 3.35
4079 4435 9.838339 CATAATTTAAACAGATGTACTCCCTCT 57.162 33.333 0.00 0.00 0.00 3.69
4080 4436 9.057089 CCATAATTTAAACAGATGTACTCCCTC 57.943 37.037 0.00 0.00 0.00 4.30
4081 4437 8.557450 ACCATAATTTAAACAGATGTACTCCCT 58.443 33.333 0.00 0.00 0.00 4.20
4082 4438 8.747538 ACCATAATTTAAACAGATGTACTCCC 57.252 34.615 0.00 0.00 0.00 4.30
4085 4441 9.747898 TCCAACCATAATTTAAACAGATGTACT 57.252 29.630 0.00 0.00 0.00 2.73
4087 4443 9.967451 TCTCCAACCATAATTTAAACAGATGTA 57.033 29.630 0.00 0.00 0.00 2.29
4088 4444 8.877864 TCTCCAACCATAATTTAAACAGATGT 57.122 30.769 0.00 0.00 0.00 3.06
4089 4445 7.917505 GCTCTCCAACCATAATTTAAACAGATG 59.082 37.037 0.00 0.00 0.00 2.90
4163 4525 7.123547 ACAAACCAGACACCTTTTTCTAAATGA 59.876 33.333 0.00 0.00 0.00 2.57
4481 4863 9.403110 GGACAAAGCATAAATAATCATGATGTC 57.597 33.333 9.46 8.65 34.50 3.06
4511 4895 7.442364 CAGAAGTCAACTCCTGAATAAACAGAA 59.558 37.037 0.00 0.00 39.94 3.02
4515 4899 5.470098 TGCAGAAGTCAACTCCTGAATAAAC 59.530 40.000 0.02 0.00 35.22 2.01
4625 5009 3.767131 CCCCTTTCCATTAACCGAACAAT 59.233 43.478 0.00 0.00 0.00 2.71
4628 5012 2.799017 ACCCCTTTCCATTAACCGAAC 58.201 47.619 0.00 0.00 0.00 3.95
4699 5083 2.228059 ACATGGAAGCTGCATATGCTC 58.772 47.619 27.13 18.44 40.22 4.26
4721 5105 6.071952 TGCCAGTTTAAATCAAAAGGAGCTAG 60.072 38.462 0.00 0.00 0.00 3.42
4744 5128 3.999663 AGCGAATTATTGAGGCTAGATGC 59.000 43.478 0.00 0.00 41.94 3.91
4788 5172 5.181009 CAGAGTGCAGAAAGATCCATACAA 58.819 41.667 0.00 0.00 0.00 2.41
4789 5173 4.223700 ACAGAGTGCAGAAAGATCCATACA 59.776 41.667 0.00 0.00 0.00 2.29
4790 5174 4.764172 ACAGAGTGCAGAAAGATCCATAC 58.236 43.478 0.00 0.00 0.00 2.39
4811 5195 5.209240 TGCGCATTTTTAACAACTGTCTAC 58.791 37.500 5.66 0.00 0.00 2.59
4843 5227 9.536558 CAAAATTTGACACATTATTTGCATCAG 57.463 29.630 0.00 0.00 0.00 2.90
5047 5434 5.790593 AGTTTAAATCAGCACTCGTTCCTA 58.209 37.500 0.00 0.00 0.00 2.94
5050 5437 6.884187 TGTAAGTTTAAATCAGCACTCGTTC 58.116 36.000 0.00 0.00 0.00 3.95
5278 5753 2.277084 ACACTCAACTTGTTGTCCGTC 58.723 47.619 12.44 0.00 0.00 4.79
5392 5867 3.931907 ATATCACTGGGCAGCTTGTTA 57.068 42.857 0.00 0.00 0.00 2.41
5655 6130 5.426833 AGATGGGCTAGACAACTTTACTGAT 59.573 40.000 0.00 0.00 0.00 2.90
5658 6133 5.958987 AGTAGATGGGCTAGACAACTTTACT 59.041 40.000 0.00 0.00 0.00 2.24
5723 6207 3.006940 TGGAATGCCGTAAACAAGCTAG 58.993 45.455 0.00 0.00 36.79 3.42
5832 6316 0.108992 GCACGACACGGTATTCCTCA 60.109 55.000 0.00 0.00 0.00 3.86
5889 6373 3.493350 CGGCATTGGTAGCTGATTAGTCT 60.493 47.826 0.00 0.00 40.83 3.24
5898 6382 1.452108 GGAAGCGGCATTGGTAGCT 60.452 57.895 1.45 0.00 42.35 3.32
5902 6386 0.247185 CAAATGGAAGCGGCATTGGT 59.753 50.000 1.45 0.00 0.00 3.67
5903 6387 0.460635 CCAAATGGAAGCGGCATTGG 60.461 55.000 1.45 3.29 37.39 3.16
5905 6389 1.218854 GCCAAATGGAAGCGGCATT 59.781 52.632 2.98 0.00 44.25 3.56
6003 6487 2.165167 CAATGGTTGCCAGAGTGATGT 58.835 47.619 0.00 0.00 36.75 3.06
6059 6546 9.100197 TGTCTAGCTTACCCATATGAATTATGA 57.900 33.333 3.65 0.00 40.22 2.15
6074 6561 3.336138 AGCCCAAAGTGTCTAGCTTAC 57.664 47.619 0.00 0.00 0.00 2.34
6091 6578 3.485877 GCTCGTCACATGAACATAAAGCC 60.486 47.826 0.00 0.00 0.00 4.35
6167 6655 0.664761 CAAGCCATCATAACTGCCGG 59.335 55.000 0.00 0.00 0.00 6.13
6169 6657 2.923121 TCTCAAGCCATCATAACTGCC 58.077 47.619 0.00 0.00 0.00 4.85
6178 6666 6.666417 CAAGCTATACATTTCTCAAGCCATC 58.334 40.000 0.00 0.00 0.00 3.51
6220 6709 6.625362 CAATAGTACGACATCTATCTGCCAT 58.375 40.000 0.00 0.00 0.00 4.40
6268 6757 9.112725 GCTTCATTTTAAGCCAATAAAATCCAT 57.887 29.630 8.65 0.00 44.98 3.41
6291 6780 4.023279 TGCGTTTGTGTATTCTTGATGCTT 60.023 37.500 0.00 0.00 0.00 3.91
6312 6801 4.278419 GGAGACCAAATATGTACCCATTGC 59.722 45.833 0.00 0.00 32.29 3.56
6324 7481 4.897076 TCCTAACTATGCGGAGACCAAATA 59.103 41.667 0.00 0.00 0.00 1.40
6350 7507 9.008965 TGCTTTCTTATGTATGTGTATTGTGTT 57.991 29.630 0.00 0.00 0.00 3.32
6357 7514 6.478673 CCGACATGCTTTCTTATGTATGTGTA 59.521 38.462 0.00 0.00 39.05 2.90
6374 7531 2.187707 CTTTGCTATTTGCCGACATGC 58.812 47.619 0.00 0.00 42.00 4.06
6377 7534 6.935741 ATATAACTTTGCTATTTGCCGACA 57.064 33.333 0.00 0.00 42.00 4.35
6445 7602 8.785329 ATTGTGTACTTGATTGTTTTGGTTTT 57.215 26.923 0.00 0.00 0.00 2.43
6446 7603 7.221838 CGATTGTGTACTTGATTGTTTTGGTTT 59.778 33.333 0.00 0.00 0.00 3.27
6447 7604 6.695278 CGATTGTGTACTTGATTGTTTTGGTT 59.305 34.615 0.00 0.00 0.00 3.67
6448 7605 6.183360 ACGATTGTGTACTTGATTGTTTTGGT 60.183 34.615 0.00 0.00 0.00 3.67
6449 7606 6.205784 ACGATTGTGTACTTGATTGTTTTGG 58.794 36.000 0.00 0.00 0.00 3.28
6450 7607 7.219917 ACAACGATTGTGTACTTGATTGTTTTG 59.780 33.333 0.00 0.00 43.48 2.44
6455 7612 8.015087 ACAATACAACGATTGTGTACTTGATTG 58.985 33.333 11.90 12.55 46.00 2.67
6462 7619 9.046821 CATTGTTACAATACAACGATTGTGTAC 57.953 33.333 10.46 9.51 46.88 2.90
6473 7630 5.179742 GGACACGGTCATTGTTACAATACAA 59.820 40.000 10.46 0.00 41.81 2.41
6474 7631 4.691685 GGACACGGTCATTGTTACAATACA 59.308 41.667 10.46 0.00 33.68 2.29
6478 7635 2.873472 GTGGACACGGTCATTGTTACAA 59.127 45.455 0.00 0.00 33.68 2.41
6481 7638 2.485903 GTGTGGACACGGTCATTGTTA 58.514 47.619 6.41 0.00 37.10 2.41
6544 7701 3.242478 CGGTCATTGTTACAACACGTGTT 60.242 43.478 27.70 27.70 41.98 3.32
6545 7702 2.285756 CGGTCATTGTTACAACACGTGT 59.714 45.455 17.22 17.22 44.82 4.49
6546 7703 2.285756 ACGGTCATTGTTACAACACGTG 59.714 45.455 15.48 15.48 38.92 4.49
6547 7704 2.285756 CACGGTCATTGTTACAACACGT 59.714 45.455 0.00 6.19 38.92 4.49
6548 7705 2.285756 ACACGGTCATTGTTACAACACG 59.714 45.455 0.00 5.57 38.92 4.49
6549 7706 3.558418 AGACACGGTCATTGTTACAACAC 59.442 43.478 0.00 0.09 35.20 3.32
6550 7707 3.799366 AGACACGGTCATTGTTACAACA 58.201 40.909 0.00 0.00 34.60 3.33
6551 7708 4.746115 TGTAGACACGGTCATTGTTACAAC 59.254 41.667 0.00 0.00 34.60 3.32
6552 7709 4.746115 GTGTAGACACGGTCATTGTTACAA 59.254 41.667 0.00 0.00 37.10 2.41
6553 7710 4.300803 GTGTAGACACGGTCATTGTTACA 58.699 43.478 0.00 3.88 37.10 2.41
6554 7711 4.898328 GTGTAGACACGGTCATTGTTAC 57.102 45.455 0.00 1.80 37.10 2.50
6581 7738 1.806542 GTCTGCGTGGTGTCATGAAAT 59.193 47.619 0.00 0.00 31.73 2.17
6582 7739 1.225855 GTCTGCGTGGTGTCATGAAA 58.774 50.000 0.00 0.00 31.73 2.69
6583 7740 0.943835 CGTCTGCGTGGTGTCATGAA 60.944 55.000 0.00 0.00 31.73 2.57
6584 7741 1.372872 CGTCTGCGTGGTGTCATGA 60.373 57.895 0.00 0.00 31.73 3.07
6585 7742 1.347097 CTCGTCTGCGTGGTGTCATG 61.347 60.000 0.00 0.00 39.49 3.07
6586 7743 1.080501 CTCGTCTGCGTGGTGTCAT 60.081 57.895 0.00 0.00 39.49 3.06
6587 7744 2.335011 CTCGTCTGCGTGGTGTCA 59.665 61.111 0.00 0.00 39.49 3.58
6588 7745 2.430921 CCTCGTCTGCGTGGTGTC 60.431 66.667 0.00 0.00 44.14 3.67
6589 7746 3.991051 CCCTCGTCTGCGTGGTGT 61.991 66.667 7.22 0.00 46.73 4.16
6590 7747 3.916392 GACCCTCGTCTGCGTGGTG 62.916 68.421 8.19 3.17 46.73 4.17
6591 7748 3.681835 GACCCTCGTCTGCGTGGT 61.682 66.667 7.22 5.74 46.73 4.16
6599 7756 2.930682 GTTGCTATTGAAGACCCTCGTC 59.069 50.000 0.00 0.00 39.50 4.20
6600 7757 2.301870 TGTTGCTATTGAAGACCCTCGT 59.698 45.455 0.00 0.00 0.00 4.18
6601 7758 2.673368 GTGTTGCTATTGAAGACCCTCG 59.327 50.000 0.00 0.00 0.00 4.63
6602 7759 3.010420 GGTGTTGCTATTGAAGACCCTC 58.990 50.000 0.00 0.00 31.91 4.30
6603 7760 2.644798 AGGTGTTGCTATTGAAGACCCT 59.355 45.455 0.00 0.00 37.44 4.34
6604 7761 3.073274 AGGTGTTGCTATTGAAGACCC 57.927 47.619 0.00 0.00 37.44 4.46
6605 7762 4.072131 TGAAGGTGTTGCTATTGAAGACC 58.928 43.478 0.00 0.00 37.08 3.85
6606 7763 5.412594 TCATGAAGGTGTTGCTATTGAAGAC 59.587 40.000 0.00 0.00 0.00 3.01
6607 7764 5.559770 TCATGAAGGTGTTGCTATTGAAGA 58.440 37.500 0.00 0.00 0.00 2.87
6608 7765 5.163683 CCTCATGAAGGTGTTGCTATTGAAG 60.164 44.000 0.00 0.00 40.67 3.02
6609 7766 4.701651 CCTCATGAAGGTGTTGCTATTGAA 59.298 41.667 0.00 0.00 40.67 2.69
6610 7767 4.264253 CCTCATGAAGGTGTTGCTATTGA 58.736 43.478 0.00 0.00 40.67 2.57
6611 7768 3.379372 CCCTCATGAAGGTGTTGCTATTG 59.621 47.826 1.78 0.00 44.56 1.90
6612 7769 3.266772 TCCCTCATGAAGGTGTTGCTATT 59.733 43.478 10.22 0.00 44.56 1.73
6650 7807 4.979815 TCGTTGTTCACATATATAGCGGTG 59.020 41.667 0.00 5.90 0.00 4.94
6651 7808 5.009310 TCTCGTTGTTCACATATATAGCGGT 59.991 40.000 0.00 0.00 0.00 5.68
6671 7828 4.052159 ACCTTTGAGTGCTCATATCTCG 57.948 45.455 2.47 0.00 39.64 4.04
6684 7841 2.825532 CCCAACCATGGTAACCTTTGAG 59.174 50.000 20.12 0.00 46.01 3.02
6708 7865 4.153655 CGATCCTTCATGGCATAACTCATG 59.846 45.833 0.00 0.00 41.35 3.07
6728 7885 9.258826 CTTTAATCATTCTCTCAAGACATCGAT 57.741 33.333 0.00 0.00 0.00 3.59
6836 8023 9.362539 GCACAATGAATTCTTCACTTGAATAAT 57.637 29.630 7.05 0.00 43.48 1.28
6842 8029 4.682860 GTGGCACAATGAATTCTTCACTTG 59.317 41.667 13.86 5.59 44.16 3.16
6850 8037 8.385111 CAATTTATTGAGTGGCACAATGAATTC 58.615 33.333 21.41 7.12 36.81 2.17
6851 8038 7.879160 ACAATTTATTGAGTGGCACAATGAATT 59.121 29.630 21.41 19.98 36.81 2.17
6852 8039 7.332430 CACAATTTATTGAGTGGCACAATGAAT 59.668 33.333 21.41 15.78 43.31 2.57
6853 8040 6.645827 CACAATTTATTGAGTGGCACAATGAA 59.354 34.615 21.41 14.28 36.00 2.57
6854 8041 6.015603 TCACAATTTATTGAGTGGCACAATGA 60.016 34.615 21.41 5.82 36.00 2.57
6855 8042 6.157904 TCACAATTTATTGAGTGGCACAATG 58.842 36.000 21.41 2.91 36.00 2.82
6856 8043 6.343716 TCACAATTTATTGAGTGGCACAAT 57.656 33.333 21.41 13.93 42.06 2.71
6857 8044 5.781210 TCACAATTTATTGAGTGGCACAA 57.219 34.783 21.41 6.70 39.40 3.33
6858 8045 5.981088 ATCACAATTTATTGAGTGGCACA 57.019 34.783 21.41 0.00 40.14 4.57
6859 8046 7.320443 TCTATCACAATTTATTGAGTGGCAC 57.680 36.000 10.29 10.29 40.14 5.01
6860 8047 7.936496 TTCTATCACAATTTATTGAGTGGCA 57.064 32.000 9.32 0.00 40.14 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.