Multiple sequence alignment - TraesCS7A01G258600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G258600 chr7A 100.000 8152 0 0 1 8152 250030251 250038402 0.000000e+00 15055.0
1 TraesCS7A01G258600 chr7D 94.860 4222 186 14 2707 6910 235161538 235165746 0.000000e+00 6565.0
2 TraesCS7A01G258600 chr7D 96.068 2416 72 15 313 2712 235153935 235156343 0.000000e+00 3914.0
3 TraesCS7A01G258600 chr7D 96.108 848 33 0 6557 7404 235165429 235166276 0.000000e+00 1384.0
4 TraesCS7A01G258600 chr7D 94.276 594 17 3 7576 8152 235166497 235167090 0.000000e+00 893.0
5 TraesCS7A01G258600 chr7D 97.000 300 9 0 1 300 235153465 235153764 9.440000e-139 505.0
6 TraesCS7A01G258600 chr7D 91.837 49 4 0 7644 7692 235166611 235166659 1.470000e-07 69.4
7 TraesCS7A01G258600 chr7B 95.858 2173 71 8 2646 4807 211113656 211115820 0.000000e+00 3496.0
8 TraesCS7A01G258600 chr7B 93.821 2104 109 7 4811 6910 211116321 211118407 0.000000e+00 3145.0
9 TraesCS7A01G258600 chr7B 96.118 1623 48 8 900 2510 211112039 211113658 0.000000e+00 2634.0
10 TraesCS7A01G258600 chr7B 95.991 848 34 0 6557 7404 211118090 211118937 0.000000e+00 1378.0
11 TraesCS7A01G258600 chr7B 93.515 879 36 10 1 877 211111188 211112047 0.000000e+00 1288.0
12 TraesCS7A01G258600 chr7B 94.118 595 17 4 7576 8152 211119153 211119747 0.000000e+00 889.0
13 TraesCS7A01G258600 chr7B 91.837 49 4 0 7644 7692 211119267 211119315 1.470000e-07 69.4
14 TraesCS7A01G258600 chr6B 86.107 3203 275 72 2980 6116 653102754 653105852 0.000000e+00 3293.0
15 TraesCS7A01G258600 chr6B 84.816 1113 122 28 957 2027 653100492 653101599 0.000000e+00 1075.0
16 TraesCS7A01G258600 chr6B 85.934 846 107 5 6065 6910 653105891 653106724 0.000000e+00 893.0
17 TraesCS7A01G258600 chr6B 88.108 555 56 7 2425 2975 653102152 653102700 0.000000e+00 651.0
18 TraesCS7A01G258600 chr6B 85.112 356 45 8 2034 2383 653101798 653102151 2.800000e-94 357.0
19 TraesCS7A01G258600 chr6B 75.719 313 68 6 6623 6934 653106371 653106676 5.100000e-32 150.0
20 TraesCS7A01G258600 chr6D 85.892 3211 277 75 2980 6118 432902598 432905704 0.000000e+00 3258.0
21 TraesCS7A01G258600 chr6D 84.196 1120 124 33 957 2028 432900325 432901439 0.000000e+00 1038.0
22 TraesCS7A01G258600 chr6D 85.753 744 88 8 6065 6802 432905777 432906508 0.000000e+00 771.0
23 TraesCS7A01G258600 chr6D 88.530 558 54 7 2422 2975 432901993 432902544 0.000000e+00 667.0
24 TraesCS7A01G258600 chr6D 86.592 358 36 11 2034 2381 432901638 432901993 1.280000e-102 385.0
25 TraesCS7A01G258600 chr6D 76.812 207 37 6 6601 6797 432906935 432907140 1.120000e-18 106.0
26 TraesCS7A01G258600 chr6A 87.356 1479 129 22 4673 6116 579019657 579021112 0.000000e+00 1642.0
27 TraesCS7A01G258600 chr6A 84.281 1126 131 27 957 2039 579015751 579016873 0.000000e+00 1057.0
28 TraesCS7A01G258600 chr6A 84.975 1005 104 27 3690 4674 579018598 579019575 0.000000e+00 976.0
29 TraesCS7A01G258600 chr6A 86.084 812 94 12 6061 6868 579021182 579021978 0.000000e+00 856.0
30 TraesCS7A01G258600 chr6A 86.988 561 60 8 2422 2975 579017705 579018259 3.230000e-173 619.0
31 TraesCS7A01G258600 chr6A 86.879 282 32 5 2034 2310 579017060 579017341 2.210000e-80 311.0
32 TraesCS7A01G258600 chr6A 85.424 295 33 5 2980 3271 579018313 579018600 1.720000e-76 298.0
33 TraesCS7A01G258600 chr6A 92.593 81 6 0 6717 6797 579022390 579022470 5.170000e-22 117.0
34 TraesCS7A01G258600 chr6A 74.126 286 58 13 6659 6941 579021670 579021942 4.020000e-18 104.0
35 TraesCS7A01G258600 chr4A 89.474 57 4 2 885 939 503477262 503477318 4.080000e-08 71.3
36 TraesCS7A01G258600 chr3A 91.837 49 3 1 723 770 632725542 632725494 5.280000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G258600 chr7A 250030251 250038402 8151 False 15055.000000 15055 100.000000 1 8152 1 chr7A.!!$F1 8151
1 TraesCS7A01G258600 chr7D 235161538 235167090 5552 False 2227.850000 6565 94.270250 2707 8152 4 chr7D.!!$F2 5445
2 TraesCS7A01G258600 chr7D 235153465 235156343 2878 False 2209.500000 3914 96.534000 1 2712 2 chr7D.!!$F1 2711
3 TraesCS7A01G258600 chr7B 211111188 211119747 8559 False 1842.771429 3496 94.465429 1 8152 7 chr7B.!!$F1 8151
4 TraesCS7A01G258600 chr6B 653100492 653106724 6232 False 1069.833333 3293 84.299333 957 6934 6 chr6B.!!$F1 5977
5 TraesCS7A01G258600 chr6D 432900325 432907140 6815 False 1037.500000 3258 84.629167 957 6802 6 chr6D.!!$F1 5845
6 TraesCS7A01G258600 chr6A 579015751 579022470 6719 False 664.444444 1642 85.411778 957 6941 9 chr6A.!!$F1 5984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 301 0.671796 TAGGCCGTCGGTGTGATATG 59.328 55.000 13.94 0.00 0.00 1.78 F
511 677 0.727398 GCATACCTGTCGGAGCAAAC 59.273 55.000 0.00 0.00 0.00 2.93 F
756 923 0.754957 TTGGGGTTGCAGTGGTTCTG 60.755 55.000 0.00 0.00 46.12 3.02 F
993 1160 1.175983 CCCAGTTAACCGCCAAAGCA 61.176 55.000 0.88 0.00 39.83 3.91 F
1024 1192 1.202758 ACAAACTTCGAGATGGTGGCA 60.203 47.619 0.00 0.00 0.00 4.92 F
2869 3592 1.220529 TCAGCAGTGAAAGAACAGCG 58.779 50.000 0.00 0.00 37.62 5.18 F
3607 4393 1.202989 TCACAGAGTCAGAGCTCACCT 60.203 52.381 17.77 8.03 37.94 4.00 F
4297 5134 0.396435 TGGACCTTCACGTGAGCAAT 59.604 50.000 19.11 5.88 0.00 3.56 F
5863 7322 0.328258 ACCATCTCCTCCGGTTTTGG 59.672 55.000 0.00 4.28 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 1969 1.106944 AAGGCAAGGTGGGTGAAACG 61.107 55.000 0.00 0.00 38.12 3.60 R
2397 3113 1.567357 TGAGGTGTCGATGGATTCCA 58.433 50.000 8.08 8.08 38.19 3.53 R
2584 3306 4.186926 ACATGATGGACTGAATTGTCTCG 58.813 43.478 0.00 0.00 37.16 4.04 R
2959 3685 2.106166 TGACCGTTTTTGGGGCTAGTAA 59.894 45.455 0.00 0.00 32.08 2.24 R
2974 3700 4.881850 ACAAAGACTTTTCAGATTGACCGT 59.118 37.500 0.00 0.00 0.00 4.83 R
3724 4518 1.111277 GGCGAACATTATGGCCCTTT 58.889 50.000 0.00 0.00 39.67 3.11 R
5028 6449 0.675633 CAGGCTTGGTTGTTCCTTGG 59.324 55.000 0.00 0.00 37.07 3.61 R
6171 7774 0.451783 GGGCAACAAAGCGATCGAAT 59.548 50.000 21.57 2.87 39.74 3.34 R
7418 9933 0.033366 GGCAGTGAATGGGCGTTTTT 59.967 50.000 0.00 0.00 0.00 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 3.807538 GCCGTGTCTGCCTGCATG 61.808 66.667 0.00 0.00 0.00 4.06
148 149 6.333416 TGACTTCGATTCAGTTTAGATGGAG 58.667 40.000 0.00 0.00 0.00 3.86
249 250 3.744660 CCTTTGCAAGAGAACACCTACT 58.255 45.455 0.00 0.00 0.00 2.57
272 273 8.575649 ACTAGTTTACCCACTTGGATAAAATG 57.424 34.615 5.49 0.00 37.39 2.32
300 301 0.671796 TAGGCCGTCGGTGTGATATG 59.328 55.000 13.94 0.00 0.00 1.78
308 471 3.802139 CGTCGGTGTGATATGTAATTGCT 59.198 43.478 0.00 0.00 0.00 3.91
309 472 4.979815 CGTCGGTGTGATATGTAATTGCTA 59.020 41.667 0.00 0.00 0.00 3.49
310 473 5.107989 CGTCGGTGTGATATGTAATTGCTAC 60.108 44.000 0.00 0.00 0.00 3.58
311 474 4.979815 TCGGTGTGATATGTAATTGCTACG 59.020 41.667 0.00 0.00 32.65 3.51
319 482 8.974408 GTGATATGTAATTGCTACGTACAATCA 58.026 33.333 17.71 14.21 36.74 2.57
348 511 4.958459 CCATTGATGGCTTGCAACTTTGC 61.958 47.826 7.02 7.02 46.88 3.68
428 594 6.228258 TCATCTGGGACTGTACAAGTAAAAC 58.772 40.000 0.00 0.00 40.07 2.43
511 677 0.727398 GCATACCTGTCGGAGCAAAC 59.273 55.000 0.00 0.00 0.00 2.93
668 834 2.747460 GCGCAGGTGCTTCCATGA 60.747 61.111 0.30 0.00 39.32 3.07
725 892 2.558359 GGAGTTCCATTGGTGAAGTTGG 59.442 50.000 1.86 0.00 35.64 3.77
749 916 0.823460 CAAGTGTTTGGGGTTGCAGT 59.177 50.000 0.00 0.00 0.00 4.40
756 923 0.754957 TTGGGGTTGCAGTGGTTCTG 60.755 55.000 0.00 0.00 46.12 3.02
770 937 1.404035 GGTTCTGTGTTGGGTGTGTTC 59.596 52.381 0.00 0.00 0.00 3.18
825 992 5.505181 AGTTTGGGAGTAGTTCACATGAT 57.495 39.130 0.00 0.00 39.46 2.45
865 1032 1.228533 TCGCCTGGTTTTCCGTAAAC 58.771 50.000 0.00 2.68 44.39 2.01
969 1136 8.634444 ACGAGCTGATTCTATTCTATTGTAGTT 58.366 33.333 0.00 0.00 0.00 2.24
993 1160 1.175983 CCCAGTTAACCGCCAAAGCA 61.176 55.000 0.88 0.00 39.83 3.91
1024 1192 1.202758 ACAAACTTCGAGATGGTGGCA 60.203 47.619 0.00 0.00 0.00 4.92
1123 1307 2.789917 GACCTTCGCGCTACTCGA 59.210 61.111 5.56 0.00 41.67 4.04
1126 1310 2.648102 CTTCGCGCTACTCGACGG 60.648 66.667 5.56 0.00 41.67 4.79
1350 1538 3.501950 CGACATGACTTCATCGAGAACA 58.498 45.455 0.00 0.00 33.61 3.18
1856 2059 9.864034 CTTAAACGCCATCAATGTATTTAGTAG 57.136 33.333 0.00 0.00 0.00 2.57
1894 2114 9.645128 TGTATTTGATTCACATATCTGGGATTT 57.355 29.630 0.00 0.00 33.92 2.17
1915 2135 3.304041 TGCGAGATGTGCACAGAAA 57.696 47.368 25.84 0.48 37.44 2.52
2030 2250 7.715249 GCTTGTCCATATAGATCCTTTGTTACA 59.285 37.037 0.00 0.00 0.00 2.41
2312 2734 5.705905 GCCACTTGGAATGTTAGTTAGACTT 59.294 40.000 0.00 0.00 37.39 3.01
2395 3111 2.711547 GCTATCTTGGATTACCCCCTGT 59.288 50.000 0.00 0.00 34.81 4.00
2397 3113 4.386424 GCTATCTTGGATTACCCCCTGTTT 60.386 45.833 0.00 0.00 34.81 2.83
2410 3127 2.017049 CCCTGTTTGGAATCCATCGAC 58.983 52.381 1.39 3.46 38.35 4.20
2623 3345 9.625747 TCCATCATGTCTTGCTATTTTACAATA 57.374 29.630 0.00 0.00 0.00 1.90
2756 3479 8.765219 CCAGTTTTCGTTGAAGATCGATAATAT 58.235 33.333 0.00 0.00 36.01 1.28
2828 3551 4.900635 ATTCTTTCACAGCGTGTCTTTT 57.099 36.364 8.22 0.00 34.79 2.27
2869 3592 1.220529 TCAGCAGTGAAAGAACAGCG 58.779 50.000 0.00 0.00 37.62 5.18
2989 3763 4.442192 CCCCAAAAACGGTCAATCTGAAAA 60.442 41.667 0.00 0.00 0.00 2.29
3033 3807 8.474025 ACATGAAGAAATAAAACAACAACAGGA 58.526 29.630 0.00 0.00 0.00 3.86
3037 3811 8.926715 AAGAAATAAAACAACAACAGGACTTC 57.073 30.769 0.00 0.00 0.00 3.01
3038 3812 8.062065 AGAAATAAAACAACAACAGGACTTCA 57.938 30.769 0.00 0.00 0.00 3.02
3114 3890 5.144100 ACCAATGACCCAAACAACTCAATA 58.856 37.500 0.00 0.00 0.00 1.90
3117 3893 7.160726 CCAATGACCCAAACAACTCAATATTT 58.839 34.615 0.00 0.00 0.00 1.40
3245 4023 4.141018 ACCAAATGTTCCCTTGAGGTACTT 60.141 41.667 0.00 0.00 41.55 2.24
3593 4379 4.345257 GGACTTCCTATAATGCCTCACAGA 59.655 45.833 0.00 0.00 0.00 3.41
3607 4393 1.202989 TCACAGAGTCAGAGCTCACCT 60.203 52.381 17.77 8.03 37.94 4.00
3719 4513 6.870971 ACCTTTATACGCAGAAAGACAAAA 57.129 33.333 4.32 0.00 35.41 2.44
3720 4514 6.899114 ACCTTTATACGCAGAAAGACAAAAG 58.101 36.000 4.32 0.00 35.41 2.27
3721 4515 6.708949 ACCTTTATACGCAGAAAGACAAAAGA 59.291 34.615 4.32 0.00 35.41 2.52
3722 4516 7.227910 ACCTTTATACGCAGAAAGACAAAAGAA 59.772 33.333 4.32 0.00 35.41 2.52
3723 4517 8.237267 CCTTTATACGCAGAAAGACAAAAGAAT 58.763 33.333 4.32 0.00 35.41 2.40
3838 4643 5.239306 TGTGCAGTCAAACCTTCTAATCTTG 59.761 40.000 0.00 0.00 0.00 3.02
3980 4786 2.289592 ACTCACAGTTCTACTCGGGT 57.710 50.000 0.00 0.00 0.00 5.28
4050 4871 7.894376 ATAAAATTGCAAGGATTTGTCAGTG 57.106 32.000 4.94 0.00 36.65 3.66
4092 4913 6.770785 AGCTTCCATTTCAGTTAGTAACAACA 59.229 34.615 15.28 0.00 0.00 3.33
4297 5134 0.396435 TGGACCTTCACGTGAGCAAT 59.604 50.000 19.11 5.88 0.00 3.56
4311 5148 3.000724 GTGAGCAATGTTCTAGTCATCGC 59.999 47.826 0.00 5.80 0.00 4.58
4675 5598 8.264347 TGGTCATCTTGTAAATTGCATACTAGA 58.736 33.333 10.95 10.95 38.71 2.43
4721 5644 5.975693 TCCTTGTTTACATCCATTTGGTC 57.024 39.130 0.00 0.00 36.34 4.02
4740 5664 3.260128 GGTCTTCCTTAGTCTTCCCGAAA 59.740 47.826 0.00 0.00 0.00 3.46
4815 6236 2.156891 GCATGTGCTTCTTGTTGCAATG 59.843 45.455 0.59 0.00 41.10 2.82
4840 6261 4.595762 ATGTTGCTTTGCTTGTGATCTT 57.404 36.364 0.00 0.00 0.00 2.40
4939 6360 6.018425 GCTATAATGATTAGCATGATGGGACG 60.018 42.308 0.00 0.00 37.28 4.79
5028 6449 2.505557 GCAGTCATTTGCAGGCGC 60.506 61.111 0.00 0.00 43.53 6.53
5067 6488 4.033358 CCTGCTAAAGCTAAATCAGTCACG 59.967 45.833 3.26 0.00 42.66 4.35
5249 6677 5.772521 AGTATCAACAAGCCAAACATTGTC 58.227 37.500 0.00 0.00 38.66 3.18
5269 6697 9.424319 CATTGTCCTATAGCTTCGTTGTATATT 57.576 33.333 0.00 0.00 0.00 1.28
5400 6829 1.079127 AGTATTCGTTGCTGCGGCT 60.079 52.632 20.27 0.00 39.59 5.52
5482 6938 1.376649 AGGGCAGATTCCACTTCCTT 58.623 50.000 0.00 0.00 0.00 3.36
5652 7108 1.669999 GAATCGCCCCAGCAAGCATT 61.670 55.000 0.00 0.00 39.83 3.56
5717 7173 1.880027 CATAACCCCGAAAGCTATGCC 59.120 52.381 0.00 0.00 0.00 4.40
5747 7203 4.187694 CCTCGAGGAAAAGGATCTTCAAG 58.812 47.826 28.21 0.00 37.39 3.02
5863 7322 0.328258 ACCATCTCCTCCGGTTTTGG 59.672 55.000 0.00 4.28 0.00 3.28
5890 7349 6.672147 ACACAGTCAATTGAGCAAGTTAATC 58.328 36.000 8.80 0.00 0.00 1.75
6087 7672 1.153086 GCAGCCGGAGATGGTGAAT 60.153 57.895 5.05 0.00 33.12 2.57
6147 7750 3.456280 CAAAGCTGAGGAGAGCATAGAC 58.544 50.000 0.00 0.00 41.83 2.59
6171 7774 1.451927 GGATGCCGACATGCTGGAA 60.452 57.895 7.96 0.00 41.15 3.53
6329 7932 1.153745 GCGTCCCTGTGTCTGCTAG 60.154 63.158 0.00 0.00 0.00 3.42
6330 7933 1.595993 GCGTCCCTGTGTCTGCTAGA 61.596 60.000 0.00 0.00 0.00 2.43
6331 7934 0.453793 CGTCCCTGTGTCTGCTAGAG 59.546 60.000 0.00 0.00 0.00 2.43
6381 7984 0.543277 CTCTAGCTTCACATGGGGCA 59.457 55.000 0.00 0.00 0.00 5.36
6524 8127 3.677156 AGAAATTATGGCCCAGAAGCT 57.323 42.857 0.00 0.00 0.00 3.74
6550 8153 5.535753 TGCTATGAGCTCAAATAGTAGCA 57.464 39.130 31.15 31.15 42.97 3.49
6663 8299 1.804601 CCGGAACACCAGTTAGGAAC 58.195 55.000 0.00 0.00 41.22 3.62
6707 8376 6.058183 CACTAGCTAAAAATATGGCTCCTGT 58.942 40.000 0.00 0.00 36.40 4.00
6918 9433 1.078759 CAGGCAGGAACTCGCTTACG 61.079 60.000 0.00 0.00 34.60 3.18
6945 9460 3.832237 AACACCAGCCAGTCGCCAG 62.832 63.158 0.00 0.00 38.78 4.85
6996 9511 1.751927 GAATCCACCTGCCAGCCAG 60.752 63.158 0.00 0.00 41.41 4.85
7023 9538 1.548986 GCGAACATGGTAAATGCTGC 58.451 50.000 0.00 0.00 0.00 5.25
7054 9569 5.396884 GCTCCTAGGGACAATGTGAATAGTT 60.397 44.000 9.46 0.00 0.00 2.24
7095 9610 1.115930 TATCGCTTCTCTCCCCCTGC 61.116 60.000 0.00 0.00 0.00 4.85
7214 9729 6.592207 ATTGTTAGGGGTATTAAGAGCCTT 57.408 37.500 17.25 12.77 37.16 4.35
7215 9730 5.367945 TGTTAGGGGTATTAAGAGCCTTG 57.632 43.478 17.25 0.00 37.16 3.61
7225 9740 4.953940 TTAAGAGCCTTGGTTTGCAATT 57.046 36.364 0.00 0.00 0.00 2.32
7297 9812 2.290896 GGACAGTGGGGATTGACAATGA 60.291 50.000 5.14 0.00 36.31 2.57
7301 9816 1.468520 GTGGGGATTGACAATGACACG 59.531 52.381 5.14 0.00 0.00 4.49
7311 9826 3.740832 TGACAATGACACGTCAAGATGTC 59.259 43.478 23.38 23.38 43.78 3.06
7341 9856 1.242076 GCATATGCTGCCTCCGAAAT 58.758 50.000 20.64 0.00 45.66 2.17
7404 9919 7.558161 TGAACTGATTATTGGATTAGCTGTG 57.442 36.000 0.00 0.00 0.00 3.66
7405 9920 6.038603 TGAACTGATTATTGGATTAGCTGTGC 59.961 38.462 0.00 0.00 0.00 4.57
7406 9921 4.512944 ACTGATTATTGGATTAGCTGTGCG 59.487 41.667 0.00 0.00 0.00 5.34
7408 9923 4.881273 TGATTATTGGATTAGCTGTGCGTT 59.119 37.500 0.00 0.00 0.00 4.84
7410 9925 0.521291 TTGGATTAGCTGTGCGTTGC 59.479 50.000 0.00 0.00 0.00 4.17
7411 9926 0.321564 TGGATTAGCTGTGCGTTGCT 60.322 50.000 0.00 2.89 42.67 3.91
7413 9928 2.213499 GGATTAGCTGTGCGTTGCTAT 58.787 47.619 0.00 0.00 40.81 2.97
7414 9929 2.221981 GGATTAGCTGTGCGTTGCTATC 59.778 50.000 0.00 5.78 40.81 2.08
7415 9930 2.672961 TTAGCTGTGCGTTGCTATCT 57.327 45.000 0.00 0.00 40.81 1.98
7417 9932 1.927895 AGCTGTGCGTTGCTATCTAC 58.072 50.000 0.00 0.00 37.81 2.59
7418 9933 1.204704 AGCTGTGCGTTGCTATCTACA 59.795 47.619 0.00 0.00 37.81 2.74
7420 9935 2.415168 GCTGTGCGTTGCTATCTACAAA 59.585 45.455 0.00 0.00 0.00 2.83
7421 9936 3.120338 GCTGTGCGTTGCTATCTACAAAA 60.120 43.478 0.00 0.00 0.00 2.44
7422 9937 4.612712 GCTGTGCGTTGCTATCTACAAAAA 60.613 41.667 0.00 0.00 0.00 1.94
7423 9938 4.778904 TGTGCGTTGCTATCTACAAAAAC 58.221 39.130 0.00 0.00 0.00 2.43
7424 9939 3.838550 GTGCGTTGCTATCTACAAAAACG 59.161 43.478 0.00 0.00 42.30 3.60
7426 9941 3.413558 CGTTGCTATCTACAAAAACGCC 58.586 45.455 0.00 0.00 34.73 5.68
7427 9942 3.726782 CGTTGCTATCTACAAAAACGCCC 60.727 47.826 0.00 0.00 34.73 6.13
7428 9943 3.060736 TGCTATCTACAAAAACGCCCA 57.939 42.857 0.00 0.00 0.00 5.36
7429 9944 3.616219 TGCTATCTACAAAAACGCCCAT 58.384 40.909 0.00 0.00 0.00 4.00
7430 9945 4.013728 TGCTATCTACAAAAACGCCCATT 58.986 39.130 0.00 0.00 0.00 3.16
7431 9946 4.095782 TGCTATCTACAAAAACGCCCATTC 59.904 41.667 0.00 0.00 0.00 2.67
7432 9947 4.095782 GCTATCTACAAAAACGCCCATTCA 59.904 41.667 0.00 0.00 0.00 2.57
7437 9952 0.033366 AAAAACGCCCATTCACTGCC 59.967 50.000 0.00 0.00 0.00 4.85
7438 9953 0.827507 AAAACGCCCATTCACTGCCT 60.828 50.000 0.00 0.00 0.00 4.75
7439 9954 1.244019 AAACGCCCATTCACTGCCTC 61.244 55.000 0.00 0.00 0.00 4.70
7440 9955 2.129555 AACGCCCATTCACTGCCTCT 62.130 55.000 0.00 0.00 0.00 3.69
7442 9957 2.413142 GCCCATTCACTGCCTCTGC 61.413 63.158 0.00 0.00 38.26 4.26
7451 9966 2.831043 TGCCTCTGCAGTGCTTCA 59.169 55.556 24.25 13.31 44.23 3.02
7452 9967 1.148949 TGCCTCTGCAGTGCTTCAA 59.851 52.632 24.25 8.10 44.23 2.69
7453 9968 0.251033 TGCCTCTGCAGTGCTTCAAT 60.251 50.000 24.25 0.00 44.23 2.57
7459 9974 2.986306 GCAGTGCTTCAATGCGCCT 61.986 57.895 8.18 0.00 44.93 5.52
7460 9975 1.582968 CAGTGCTTCAATGCGCCTT 59.417 52.632 4.18 0.00 43.73 4.35
7461 9976 0.038892 CAGTGCTTCAATGCGCCTTT 60.039 50.000 4.18 0.00 43.73 3.11
7463 9978 1.067199 GTGCTTCAATGCGCCTTTCG 61.067 55.000 4.18 0.00 37.48 3.46
7464 9979 1.210155 GCTTCAATGCGCCTTTCGT 59.790 52.632 4.18 0.00 41.07 3.85
7465 9980 1.067199 GCTTCAATGCGCCTTTCGTG 61.067 55.000 4.18 0.00 41.07 4.35
7473 9988 4.179579 GCCTTTCGTGCGGCCATC 62.180 66.667 2.24 0.00 40.43 3.51
7474 9989 2.436646 CCTTTCGTGCGGCCATCT 60.437 61.111 2.24 0.00 0.00 2.90
7475 9990 2.040544 CCTTTCGTGCGGCCATCTT 61.041 57.895 2.24 0.00 0.00 2.40
7476 9991 1.425428 CTTTCGTGCGGCCATCTTC 59.575 57.895 2.24 0.00 0.00 2.87
7477 9992 1.298157 CTTTCGTGCGGCCATCTTCA 61.298 55.000 2.24 0.00 0.00 3.02
7479 9994 2.125552 CGTGCGGCCATCTTCAGA 60.126 61.111 2.24 0.00 0.00 3.27
7481 9996 1.078848 GTGCGGCCATCTTCAGAGT 60.079 57.895 2.24 0.00 0.00 3.24
7482 9997 0.674895 GTGCGGCCATCTTCAGAGTT 60.675 55.000 2.24 0.00 0.00 3.01
7483 9998 0.391661 TGCGGCCATCTTCAGAGTTC 60.392 55.000 2.24 0.00 0.00 3.01
7484 9999 0.391661 GCGGCCATCTTCAGAGTTCA 60.392 55.000 2.24 0.00 0.00 3.18
7491 10006 4.384056 CCATCTTCAGAGTTCACACAAGT 58.616 43.478 0.00 0.00 0.00 3.16
7493 10008 5.049818 CCATCTTCAGAGTTCACACAAGTTC 60.050 44.000 0.00 0.00 0.00 3.01
7494 10009 4.112634 TCTTCAGAGTTCACACAAGTTCG 58.887 43.478 0.00 0.00 0.00 3.95
7495 10010 3.520290 TCAGAGTTCACACAAGTTCGT 57.480 42.857 0.00 0.00 0.00 3.85
7496 10011 3.444916 TCAGAGTTCACACAAGTTCGTC 58.555 45.455 0.00 0.00 0.00 4.20
7497 10012 2.540101 CAGAGTTCACACAAGTTCGTCC 59.460 50.000 0.00 0.00 0.00 4.79
7498 10013 2.431057 AGAGTTCACACAAGTTCGTCCT 59.569 45.455 0.00 0.00 0.00 3.85
7499 10014 2.795470 GAGTTCACACAAGTTCGTCCTC 59.205 50.000 0.00 0.00 0.00 3.71
7501 10016 3.635373 AGTTCACACAAGTTCGTCCTCTA 59.365 43.478 0.00 0.00 0.00 2.43
7503 10018 3.220110 TCACACAAGTTCGTCCTCTACT 58.780 45.455 0.00 0.00 0.00 2.57
7504 10019 3.004419 TCACACAAGTTCGTCCTCTACTG 59.996 47.826 0.00 0.00 0.00 2.74
7505 10020 3.004419 CACACAAGTTCGTCCTCTACTGA 59.996 47.826 0.00 0.00 0.00 3.41
7507 10022 5.008331 ACACAAGTTCGTCCTCTACTGATA 58.992 41.667 0.00 0.00 0.00 2.15
7509 10024 6.827251 ACACAAGTTCGTCCTCTACTGATATA 59.173 38.462 0.00 0.00 0.00 0.86
7512 10027 5.622180 AGTTCGTCCTCTACTGATATAGCA 58.378 41.667 0.00 0.00 0.00 3.49
7513 10028 6.062749 AGTTCGTCCTCTACTGATATAGCAA 58.937 40.000 0.00 0.00 0.00 3.91
7514 10029 6.717540 AGTTCGTCCTCTACTGATATAGCAAT 59.282 38.462 0.00 0.00 0.00 3.56
7516 10031 6.477253 TCGTCCTCTACTGATATAGCAATCT 58.523 40.000 0.00 0.00 0.00 2.40
7517 10032 6.372937 TCGTCCTCTACTGATATAGCAATCTG 59.627 42.308 0.00 0.00 0.00 2.90
7519 10034 7.066887 CGTCCTCTACTGATATAGCAATCTGAT 59.933 40.741 0.00 0.00 0.00 2.90
7520 10035 8.190122 GTCCTCTACTGATATAGCAATCTGATG 58.810 40.741 0.00 0.00 0.00 3.07
7521 10036 7.341512 TCCTCTACTGATATAGCAATCTGATGG 59.658 40.741 0.00 0.00 0.00 3.51
7522 10037 7.123997 CCTCTACTGATATAGCAATCTGATGGT 59.876 40.741 0.00 0.00 34.89 3.55
7523 10038 8.427902 TCTACTGATATAGCAATCTGATGGTT 57.572 34.615 0.00 0.00 32.43 3.67
7524 10039 8.309656 TCTACTGATATAGCAATCTGATGGTTG 58.690 37.037 0.00 0.00 32.43 3.77
7525 10040 6.835174 ACTGATATAGCAATCTGATGGTTGT 58.165 36.000 0.00 0.00 32.43 3.32
7526 10041 7.285566 ACTGATATAGCAATCTGATGGTTGTT 58.714 34.615 0.00 0.00 32.43 2.83
7527 10042 8.432013 ACTGATATAGCAATCTGATGGTTGTTA 58.568 33.333 0.00 0.00 32.43 2.41
7529 10044 7.388776 TGATATAGCAATCTGATGGTTGTTAGC 59.611 37.037 0.00 0.00 32.43 3.09
7532 10047 4.768968 AGCAATCTGATGGTTGTTAGCTTT 59.231 37.500 0.00 0.00 0.00 3.51
7533 10048 5.945784 AGCAATCTGATGGTTGTTAGCTTTA 59.054 36.000 0.00 0.00 0.00 1.85
7534 10049 6.434028 AGCAATCTGATGGTTGTTAGCTTTAA 59.566 34.615 0.00 0.00 0.00 1.52
7536 10051 7.575720 GCAATCTGATGGTTGTTAGCTTTAAGT 60.576 37.037 0.00 0.00 0.00 2.24
7537 10052 8.299570 CAATCTGATGGTTGTTAGCTTTAAGTT 58.700 33.333 0.00 0.00 0.00 2.66
7538 10053 9.515226 AATCTGATGGTTGTTAGCTTTAAGTTA 57.485 29.630 0.00 0.00 0.00 2.24
7539 10054 8.911918 TCTGATGGTTGTTAGCTTTAAGTTAA 57.088 30.769 0.00 0.00 0.00 2.01
7540 10055 9.515226 TCTGATGGTTGTTAGCTTTAAGTTAAT 57.485 29.630 4.69 0.00 0.00 1.40
7567 10082 7.792364 TTCTCTTTTCTGTAGAAGGTATGGA 57.208 36.000 0.00 0.00 35.21 3.41
7569 10084 6.724441 TCTCTTTTCTGTAGAAGGTATGGACA 59.276 38.462 0.00 0.00 35.21 4.02
7570 10085 6.698380 TCTTTTCTGTAGAAGGTATGGACAC 58.302 40.000 0.00 0.00 35.21 3.67
7572 10087 6.681729 TTTCTGTAGAAGGTATGGACACTT 57.318 37.500 0.00 0.00 35.21 3.16
7573 10088 6.681729 TTCTGTAGAAGGTATGGACACTTT 57.318 37.500 0.00 0.00 0.00 2.66
7574 10089 6.037786 TCTGTAGAAGGTATGGACACTTTG 57.962 41.667 0.00 0.00 0.00 2.77
7642 10206 3.898123 ACTGGTCTTGCATCGAGGTATAT 59.102 43.478 0.00 0.00 0.00 0.86
7754 10319 4.346709 TCGACACACATTATATGGGGTGAT 59.653 41.667 12.10 0.00 40.11 3.06
7768 10333 2.593026 GGGTGATGAGGTTTTGGTTGA 58.407 47.619 0.00 0.00 0.00 3.18
7795 10360 6.330004 TGTGATGCACATCTATGTTTGTTT 57.670 33.333 11.66 0.00 39.62 2.83
7796 10361 6.151004 TGTGATGCACATCTATGTTTGTTTG 58.849 36.000 11.66 0.00 39.62 2.93
7915 10492 7.030768 AGACGAGAAATCTTTAGTAGTCAAGC 58.969 38.462 0.00 0.00 0.00 4.01
7950 10527 2.950975 TCGTACGTGTGAGGCCATATTA 59.049 45.455 16.05 0.00 0.00 0.98
8036 10615 7.921041 ATCTTTCTAGAATGTCTCCATACCA 57.079 36.000 15.74 0.00 33.20 3.25
8116 10698 9.202273 CTTAGTTTCCAGAATAGATATGCAGTC 57.798 37.037 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.717077 AGAACCAGTGGAGGGAGAGTA 59.283 52.381 18.40 0.00 0.00 2.59
272 273 0.949105 CCGACGGCCTATTACATGCC 60.949 60.000 0.00 0.00 41.85 4.40
300 301 9.429600 GGTTAATTGATTGTACGTAGCAATTAC 57.570 33.333 21.15 17.27 39.64 1.89
348 511 5.766222 GCCAAAAGCTACCATATCTTGATG 58.234 41.667 0.00 0.00 38.99 3.07
428 594 7.359598 GGCGCAATACAGATCTCTAGTTATTTG 60.360 40.741 10.83 0.00 0.00 2.32
448 614 1.798283 AATACGTGTTACTGGCGCAA 58.202 45.000 10.83 0.00 0.00 4.85
511 677 4.440525 GGCTGGTCACATGTAAATTGATGG 60.441 45.833 0.00 0.00 0.00 3.51
574 740 5.104067 GGATACCAGGGTGGAAAATAGAACT 60.104 44.000 0.06 0.00 40.96 3.01
668 834 4.282496 AGTTGCAGCCTAGACTACTGTAT 58.718 43.478 0.00 0.00 33.87 2.29
749 916 0.329931 ACACACCCAACACAGAACCA 59.670 50.000 0.00 0.00 0.00 3.67
756 923 0.099791 CCAACGAACACACCCAACAC 59.900 55.000 0.00 0.00 0.00 3.32
825 992 1.029408 AACCGCACAGACTTGCACAA 61.029 50.000 9.34 0.00 43.15 3.33
865 1032 5.486526 AGAAGAACAGAGTTGCCTGATTAG 58.513 41.667 0.00 0.00 37.59 1.73
954 1121 7.574607 ACTGGGGGAAAACTACAATAGAATAG 58.425 38.462 0.00 0.00 0.00 1.73
969 1136 1.075305 GGCGGTTAACTGGGGGAAA 59.925 57.895 16.13 0.00 0.00 3.13
993 1160 2.098607 TCGAAGTTTGTGACTCGTCAGT 59.901 45.455 0.00 0.00 40.75 3.41
1767 1969 1.106944 AAGGCAAGGTGGGTGAAACG 61.107 55.000 0.00 0.00 38.12 3.60
1880 2090 4.588951 TCTCGCACTAAATCCCAGATATGT 59.411 41.667 0.00 0.00 0.00 2.29
1915 2135 4.824289 CCTTAAGCAGATGCCAAACAAAT 58.176 39.130 0.14 0.00 43.38 2.32
2395 3111 2.304470 TGAGGTGTCGATGGATTCCAAA 59.696 45.455 9.98 0.00 36.95 3.28
2397 3113 1.567357 TGAGGTGTCGATGGATTCCA 58.433 50.000 8.08 8.08 38.19 3.53
2584 3306 4.186926 ACATGATGGACTGAATTGTCTCG 58.813 43.478 0.00 0.00 37.16 4.04
2806 3529 4.900635 AAAGACACGCTGTGAAAGAATT 57.099 36.364 14.18 0.00 36.96 2.17
2828 3551 5.237561 TGATGTGACTGCTTTTAGCGTAAAA 59.762 36.000 0.00 3.89 46.26 1.52
2869 3592 6.738832 AGAAACTTTTTATTCGGCTAGGAC 57.261 37.500 0.00 0.00 0.00 3.85
2958 3684 3.148412 GACCGTTTTTGGGGCTAGTAAA 58.852 45.455 0.00 0.00 0.00 2.01
2959 3685 2.106166 TGACCGTTTTTGGGGCTAGTAA 59.894 45.455 0.00 0.00 32.08 2.24
2974 3700 4.881850 ACAAAGACTTTTCAGATTGACCGT 59.118 37.500 0.00 0.00 0.00 4.83
2989 3763 6.126863 TCATGTCCCTTTATGACAAAGACT 57.873 37.500 0.00 0.00 45.15 3.24
3237 4015 2.149973 TCCGGTCCCTAAAGTACCTC 57.850 55.000 0.00 0.00 0.00 3.85
3245 4023 0.035820 GTGCACATTCCGGTCCCTAA 60.036 55.000 13.17 0.00 0.00 2.69
3593 4379 2.300956 TGAGAAGGTGAGCTCTGACT 57.699 50.000 16.19 7.40 32.44 3.41
3637 4423 6.412362 AGTAGATCAGTCAGTTTTCTGTGT 57.588 37.500 0.00 0.00 46.98 3.72
3638 4424 8.994429 ATTAGTAGATCAGTCAGTTTTCTGTG 57.006 34.615 0.00 0.00 46.98 3.66
3719 4513 4.278419 GCGAACATTATGGCCCTTTATTCT 59.722 41.667 0.00 0.00 0.00 2.40
3720 4514 4.546570 GCGAACATTATGGCCCTTTATTC 58.453 43.478 0.00 0.00 0.00 1.75
3721 4515 3.320826 GGCGAACATTATGGCCCTTTATT 59.679 43.478 0.00 0.00 39.67 1.40
3722 4516 2.890945 GGCGAACATTATGGCCCTTTAT 59.109 45.455 0.00 0.00 39.67 1.40
3723 4517 2.303175 GGCGAACATTATGGCCCTTTA 58.697 47.619 0.00 0.00 39.67 1.85
3724 4518 1.111277 GGCGAACATTATGGCCCTTT 58.889 50.000 0.00 0.00 39.67 3.11
3838 4643 4.853924 TTCAAAAAGATCTTCACTGCCC 57.146 40.909 8.78 0.00 0.00 5.36
3957 4763 5.124645 ACCCGAGTAGAACTGTGAGTATAG 58.875 45.833 0.00 0.00 0.00 1.31
3980 4786 4.534500 AGACATTTGGGTGTAGACATGGTA 59.466 41.667 0.00 0.00 31.16 3.25
4050 4871 5.932303 TGGAAGCTGTCATAAGAACTGTTAC 59.068 40.000 0.00 0.00 0.00 2.50
4297 5134 4.083164 TGAGTTAACGCGATGACTAGAACA 60.083 41.667 15.93 4.62 0.00 3.18
4311 5148 3.675698 GCAGAGGAACTTCTGAGTTAACG 59.324 47.826 16.10 0.00 45.88 3.18
4420 5257 4.262592 GGATGCCTGTTTTGAGTTGGAAAT 60.263 41.667 0.00 0.00 0.00 2.17
4530 5370 2.632377 ACACCATCCATTAAGTCTGCG 58.368 47.619 0.00 0.00 0.00 5.18
4599 5439 7.849804 AACATAAGTTCTTGTGCTATCGAAT 57.150 32.000 8.74 0.00 30.46 3.34
4675 5598 4.881273 TGAACTGCCGCACAATAATAGATT 59.119 37.500 0.00 0.00 0.00 2.40
4788 5712 3.738830 ACAAGAAGCACATGCATTTGT 57.261 38.095 14.07 9.41 45.16 2.83
4815 6236 3.976169 TCACAAGCAAAGCAACATAACC 58.024 40.909 0.00 0.00 0.00 2.85
4840 6261 5.630121 TGAGATGGAACTTTTTCTAGGCAA 58.370 37.500 0.00 0.00 31.71 4.52
4989 6410 5.538053 TGCCCATCTCTGAAAACAACAATAA 59.462 36.000 0.00 0.00 0.00 1.40
5028 6449 0.675633 CAGGCTTGGTTGTTCCTTGG 59.324 55.000 0.00 0.00 37.07 3.61
5067 6488 6.437094 AGTAGCTTTTATATCGAACTCCGTC 58.563 40.000 0.00 0.00 39.75 4.79
5249 6677 9.862371 ATCTCAAATATACAACGAAGCTATAGG 57.138 33.333 1.04 0.00 0.00 2.57
5269 6697 3.938963 GCCAGAACGGATTTACATCTCAA 59.061 43.478 0.00 0.00 36.56 3.02
5400 6829 5.048083 GGATGTTGCACATTTTAACTCAGGA 60.048 40.000 0.00 0.00 39.27 3.86
5652 7108 4.567971 CAGCTTTCAATAAATTGGTGGCA 58.432 39.130 3.00 0.00 38.30 4.92
5717 7173 3.451178 TCCTTTTCCTCGAGGTCTTATGG 59.549 47.826 30.17 22.80 34.57 2.74
5863 7322 5.424121 ACTTGCTCAATTGACTGTGTTAC 57.576 39.130 3.38 0.00 0.00 2.50
5890 7349 2.547211 CTCCTGCAACTTCTGACACAAG 59.453 50.000 0.00 0.00 0.00 3.16
6087 7672 2.429971 CTGCTTCACTATCTCTGGCTGA 59.570 50.000 0.00 0.00 0.00 4.26
6147 7750 1.825191 CATGTCGGCATCCTTGGGG 60.825 63.158 0.00 0.00 31.99 4.96
6171 7774 0.451783 GGGCAACAAAGCGATCGAAT 59.548 50.000 21.57 2.87 39.74 3.34
6313 7916 0.820871 CCTCTAGCAGACACAGGGAC 59.179 60.000 0.00 0.00 0.00 4.46
6329 7932 2.743928 CGGTTGCTGGTGCTCCTC 60.744 66.667 6.34 0.00 40.48 3.71
6330 7933 3.560251 ACGGTTGCTGGTGCTCCT 61.560 61.111 6.34 0.00 40.48 3.69
6331 7934 3.357079 CACGGTTGCTGGTGCTCC 61.357 66.667 0.00 0.00 40.48 4.70
6381 7984 3.117512 AGGTGACTGTTGATGGAAAGGTT 60.118 43.478 0.00 0.00 41.13 3.50
6524 8127 4.711399 ACTATTTGAGCTCATAGCATGCA 58.289 39.130 21.98 6.36 45.56 3.96
6550 8153 2.053865 CCGCATTCCTGGCCATTGT 61.054 57.895 5.51 0.00 0.00 2.71
6612 8215 2.107950 TATTCTTGGCTGGTGTTCCG 57.892 50.000 0.00 0.00 36.30 4.30
6918 9433 2.985847 GCTGGTGTTCTGGTGCCC 60.986 66.667 0.00 0.00 0.00 5.36
6925 9440 2.031163 GCGACTGGCTGGTGTTCT 59.969 61.111 0.00 0.00 39.11 3.01
6967 9482 0.183731 GGTGGATTCCCCTTGCTAGG 59.816 60.000 7.29 7.29 41.60 3.02
6996 9511 0.177141 TACCATGTTCGCCTGGCTAC 59.823 55.000 17.92 14.65 36.51 3.58
7023 9538 5.240183 CACATTGTCCCTAGGAGCATTATTG 59.760 44.000 11.48 6.95 29.39 1.90
7054 9569 9.087424 CGATAATGATGTTTAAGAGTGTGAGAA 57.913 33.333 0.00 0.00 0.00 2.87
7065 9580 6.706270 GGGAGAGAAGCGATAATGATGTTTAA 59.294 38.462 0.00 0.00 0.00 1.52
7095 9610 6.371548 TGGTTCAGAAAAGAATGGAGTAATCG 59.628 38.462 0.00 0.00 0.00 3.34
7250 9765 7.814587 CACACTGATACAAAGACAAGTCAGATA 59.185 37.037 7.14 0.00 37.21 1.98
7263 9778 3.495983 CCCACTGTCCACACTGATACAAA 60.496 47.826 0.00 0.00 0.00 2.83
7297 9812 1.604693 GGAACGGACATCTTGACGTGT 60.605 52.381 0.00 0.00 35.55 4.49
7301 9816 1.550976 AGAGGGAACGGACATCTTGAC 59.449 52.381 0.00 0.00 0.00 3.18
7311 9826 0.107456 AGCATATGCAGAGGGAACGG 59.893 55.000 28.62 0.00 45.16 4.44
7336 9851 4.204168 CACGTCAAAACAACTCCAATTTCG 59.796 41.667 0.00 0.00 0.00 3.46
7341 9856 2.680841 CCTCACGTCAAAACAACTCCAA 59.319 45.455 0.00 0.00 0.00 3.53
7390 9905 1.133025 GCAACGCACAGCTAATCCAAT 59.867 47.619 0.00 0.00 0.00 3.16
7405 9920 3.413558 GGCGTTTTTGTAGATAGCAACG 58.586 45.455 0.00 0.00 39.91 4.10
7406 9921 3.189702 TGGGCGTTTTTGTAGATAGCAAC 59.810 43.478 0.00 0.00 0.00 4.17
7408 9923 3.060736 TGGGCGTTTTTGTAGATAGCA 57.939 42.857 0.00 0.00 0.00 3.49
7410 9925 5.354234 AGTGAATGGGCGTTTTTGTAGATAG 59.646 40.000 0.00 0.00 0.00 2.08
7411 9926 5.123186 CAGTGAATGGGCGTTTTTGTAGATA 59.877 40.000 0.00 0.00 0.00 1.98
7413 9928 3.252215 CAGTGAATGGGCGTTTTTGTAGA 59.748 43.478 0.00 0.00 0.00 2.59
7414 9929 3.564511 CAGTGAATGGGCGTTTTTGTAG 58.435 45.455 0.00 0.00 0.00 2.74
7415 9930 2.287909 GCAGTGAATGGGCGTTTTTGTA 60.288 45.455 0.00 0.00 0.00 2.41
7417 9932 1.139163 GCAGTGAATGGGCGTTTTTG 58.861 50.000 0.00 0.00 0.00 2.44
7418 9933 0.033366 GGCAGTGAATGGGCGTTTTT 59.967 50.000 0.00 0.00 0.00 1.94
7420 9935 1.228552 AGGCAGTGAATGGGCGTTT 60.229 52.632 0.00 0.00 34.32 3.60
7421 9936 1.675641 GAGGCAGTGAATGGGCGTT 60.676 57.895 0.00 0.00 34.32 4.84
7422 9937 2.045926 GAGGCAGTGAATGGGCGT 60.046 61.111 0.00 0.00 34.32 5.68
7423 9938 2.110967 CAGAGGCAGTGAATGGGCG 61.111 63.158 0.00 0.00 34.32 6.13
7424 9939 2.413142 GCAGAGGCAGTGAATGGGC 61.413 63.158 0.00 0.00 40.72 5.36
7425 9940 3.915575 GCAGAGGCAGTGAATGGG 58.084 61.111 0.00 0.00 40.72 4.00
7437 9952 0.179197 CGCATTGAAGCACTGCAGAG 60.179 55.000 23.35 14.77 39.47 3.35
7438 9953 1.871077 CGCATTGAAGCACTGCAGA 59.129 52.632 23.35 0.00 39.47 4.26
7439 9954 1.800315 GCGCATTGAAGCACTGCAG 60.800 57.895 13.48 13.48 39.47 4.41
7440 9955 2.256158 GCGCATTGAAGCACTGCA 59.744 55.556 0.30 0.00 39.47 4.41
7442 9957 0.038892 AAAGGCGCATTGAAGCACTG 60.039 50.000 8.59 0.00 34.54 3.66
7443 9958 0.242017 GAAAGGCGCATTGAAGCACT 59.758 50.000 8.59 0.00 34.54 4.40
7447 9962 1.067199 GCACGAAAGGCGCATTGAAG 61.067 55.000 8.59 5.43 46.04 3.02
7448 9963 1.081509 GCACGAAAGGCGCATTGAA 60.082 52.632 8.59 0.00 46.04 2.69
7457 9972 1.982073 GAAGATGGCCGCACGAAAGG 61.982 60.000 0.00 0.00 0.00 3.11
7459 9974 1.298157 CTGAAGATGGCCGCACGAAA 61.298 55.000 0.00 0.00 0.00 3.46
7460 9975 1.741401 CTGAAGATGGCCGCACGAA 60.741 57.895 0.00 0.00 0.00 3.85
7461 9976 2.125552 CTGAAGATGGCCGCACGA 60.126 61.111 0.00 0.00 0.00 4.35
7463 9978 0.674895 AACTCTGAAGATGGCCGCAC 60.675 55.000 0.00 0.00 0.00 5.34
7464 9979 0.391661 GAACTCTGAAGATGGCCGCA 60.392 55.000 0.00 0.00 0.00 5.69
7465 9980 0.391661 TGAACTCTGAAGATGGCCGC 60.392 55.000 0.00 0.00 0.00 6.53
7466 9981 1.338105 TGTGAACTCTGAAGATGGCCG 60.338 52.381 0.00 0.00 0.00 6.13
7472 9987 4.112634 CGAACTTGTGTGAACTCTGAAGA 58.887 43.478 0.00 0.00 0.00 2.87
7473 9988 3.865745 ACGAACTTGTGTGAACTCTGAAG 59.134 43.478 0.00 0.00 0.00 3.02
7474 9989 3.857052 ACGAACTTGTGTGAACTCTGAA 58.143 40.909 0.00 0.00 0.00 3.02
7475 9990 3.444916 GACGAACTTGTGTGAACTCTGA 58.555 45.455 0.00 0.00 0.00 3.27
7476 9991 2.540101 GGACGAACTTGTGTGAACTCTG 59.460 50.000 0.00 0.00 0.00 3.35
7477 9992 2.431057 AGGACGAACTTGTGTGAACTCT 59.569 45.455 0.00 0.00 0.00 3.24
7479 9994 2.431057 AGAGGACGAACTTGTGTGAACT 59.569 45.455 0.00 0.00 0.00 3.01
7481 9996 3.635373 AGTAGAGGACGAACTTGTGTGAA 59.365 43.478 0.00 0.00 0.00 3.18
7482 9997 3.004419 CAGTAGAGGACGAACTTGTGTGA 59.996 47.826 0.00 0.00 0.00 3.58
7483 9998 3.004419 TCAGTAGAGGACGAACTTGTGTG 59.996 47.826 0.00 0.00 0.00 3.82
7484 9999 3.220110 TCAGTAGAGGACGAACTTGTGT 58.780 45.455 0.00 0.00 0.00 3.72
7491 10006 6.943146 AGATTGCTATATCAGTAGAGGACGAA 59.057 38.462 0.00 0.00 0.00 3.85
7493 10008 6.372937 TCAGATTGCTATATCAGTAGAGGACG 59.627 42.308 0.00 0.00 0.00 4.79
7494 10009 7.695480 TCAGATTGCTATATCAGTAGAGGAC 57.305 40.000 0.00 0.00 0.00 3.85
7495 10010 7.341512 CCATCAGATTGCTATATCAGTAGAGGA 59.658 40.741 0.00 0.00 0.00 3.71
7496 10011 7.123997 ACCATCAGATTGCTATATCAGTAGAGG 59.876 40.741 0.00 0.00 0.00 3.69
7497 10012 8.065473 ACCATCAGATTGCTATATCAGTAGAG 57.935 38.462 0.00 0.00 0.00 2.43
7498 10013 8.309656 CAACCATCAGATTGCTATATCAGTAGA 58.690 37.037 0.00 0.00 0.00 2.59
7499 10014 8.093307 ACAACCATCAGATTGCTATATCAGTAG 58.907 37.037 0.00 0.00 0.00 2.57
7501 10016 6.835174 ACAACCATCAGATTGCTATATCAGT 58.165 36.000 0.00 0.00 0.00 3.41
7503 10018 7.388776 GCTAACAACCATCAGATTGCTATATCA 59.611 37.037 0.00 0.00 0.00 2.15
7504 10019 7.605691 AGCTAACAACCATCAGATTGCTATATC 59.394 37.037 0.00 0.00 0.00 1.63
7505 10020 7.456725 AGCTAACAACCATCAGATTGCTATAT 58.543 34.615 0.00 0.00 0.00 0.86
7507 10022 5.688807 AGCTAACAACCATCAGATTGCTAT 58.311 37.500 0.00 0.00 0.00 2.97
7509 10024 3.960571 AGCTAACAACCATCAGATTGCT 58.039 40.909 0.00 0.00 0.00 3.91
7512 10027 8.409358 AACTTAAAGCTAACAACCATCAGATT 57.591 30.769 0.00 0.00 0.00 2.40
7513 10028 9.515226 TTAACTTAAAGCTAACAACCATCAGAT 57.485 29.630 0.00 0.00 0.00 2.90
7514 10029 8.911918 TTAACTTAAAGCTAACAACCATCAGA 57.088 30.769 0.00 0.00 0.00 3.27
7541 10056 8.826765 TCCATACCTTCTACAGAAAAGAGAAAT 58.173 33.333 0.00 0.00 33.07 2.17
7542 10057 8.095169 GTCCATACCTTCTACAGAAAAGAGAAA 58.905 37.037 0.00 0.00 33.07 2.52
7543 10058 7.234782 TGTCCATACCTTCTACAGAAAAGAGAA 59.765 37.037 0.00 0.00 33.07 2.87
7544 10059 6.724441 TGTCCATACCTTCTACAGAAAAGAGA 59.276 38.462 0.00 0.00 33.07 3.10
7545 10060 6.814146 GTGTCCATACCTTCTACAGAAAAGAG 59.186 42.308 0.00 0.00 33.07 2.85
7546 10061 6.497259 AGTGTCCATACCTTCTACAGAAAAGA 59.503 38.462 0.00 0.00 33.07 2.52
7548 10063 6.681729 AGTGTCCATACCTTCTACAGAAAA 57.318 37.500 0.00 0.00 33.07 2.29
7549 10064 6.681729 AAGTGTCCATACCTTCTACAGAAA 57.318 37.500 0.00 0.00 33.07 2.52
7550 10065 6.464222 CAAAGTGTCCATACCTTCTACAGAA 58.536 40.000 0.00 0.00 0.00 3.02
7551 10066 5.046591 CCAAAGTGTCCATACCTTCTACAGA 60.047 44.000 0.00 0.00 0.00 3.41
7552 10067 5.178797 CCAAAGTGTCCATACCTTCTACAG 58.821 45.833 0.00 0.00 0.00 2.74
7553 10068 4.564821 GCCAAAGTGTCCATACCTTCTACA 60.565 45.833 0.00 0.00 0.00 2.74
7554 10069 3.939592 GCCAAAGTGTCCATACCTTCTAC 59.060 47.826 0.00 0.00 0.00 2.59
7555 10070 3.844211 AGCCAAAGTGTCCATACCTTCTA 59.156 43.478 0.00 0.00 0.00 2.10
7556 10071 2.644798 AGCCAAAGTGTCCATACCTTCT 59.355 45.455 0.00 0.00 0.00 2.85
7557 10072 3.073274 AGCCAAAGTGTCCATACCTTC 57.927 47.619 0.00 0.00 0.00 3.46
7560 10075 7.582667 AATTATAAGCCAAAGTGTCCATACC 57.417 36.000 0.00 0.00 0.00 2.73
7561 10076 9.946165 GTTAATTATAAGCCAAAGTGTCCATAC 57.054 33.333 0.00 0.00 0.00 2.39
7563 10078 7.554835 TCGTTAATTATAAGCCAAAGTGTCCAT 59.445 33.333 0.00 0.00 0.00 3.41
7564 10079 6.879993 TCGTTAATTATAAGCCAAAGTGTCCA 59.120 34.615 0.00 0.00 0.00 4.02
7565 10080 7.311364 TCGTTAATTATAAGCCAAAGTGTCC 57.689 36.000 0.00 0.00 0.00 4.02
7642 10206 7.992608 TCTGAATTTATATTAGCAAGCACCTGA 59.007 33.333 0.00 0.00 0.00 3.86
7679 10243 0.725784 CAAGCACGTGCCGATGAAAC 60.726 55.000 35.51 6.41 43.38 2.78
7754 10319 5.667539 TCACAATTTCAACCAAAACCTCA 57.332 34.783 0.00 0.00 0.00 3.86
7795 10360 5.738619 TCTTGTGCCTATCAGTTCTTACA 57.261 39.130 0.00 0.00 0.00 2.41
7796 10361 5.525378 CCATCTTGTGCCTATCAGTTCTTAC 59.475 44.000 0.00 0.00 0.00 2.34
7915 10492 6.303022 TCACACGTACGAAAACTAATACTTCG 59.697 38.462 24.41 2.17 45.65 3.79
8036 10615 4.523083 ACCGCACATAATAACCATGAACT 58.477 39.130 0.00 0.00 0.00 3.01
8116 10698 6.925610 ATGTACAATACCTACAAGTGCATG 57.074 37.500 0.00 0.00 34.90 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.