Multiple sequence alignment - TraesCS7A01G258500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G258500 chr7A 100.000 4930 0 0 1 4930 249597478 249592549 0.000000e+00 9105.0
1 TraesCS7A01G258500 chr7D 94.338 4239 152 31 723 4930 234809083 234804902 0.000000e+00 6418.0
2 TraesCS7A01G258500 chr7B 96.684 1689 48 2 2506 4186 210862969 210861281 0.000000e+00 2802.0
3 TraesCS7A01G258500 chr7B 92.397 1973 94 28 496 2448 210864908 210862972 0.000000e+00 2761.0
4 TraesCS7A01G258500 chr7B 90.162 681 41 14 4256 4928 210861256 210860594 0.000000e+00 863.0
5 TraesCS7A01G258500 chr7B 86.022 93 13 0 1953 2045 490685182 490685090 3.140000e-17 100.0
6 TraesCS7A01G258500 chr7B 100.000 28 0 0 450 477 679844195 679844222 9.000000e-03 52.8
7 TraesCS7A01G258500 chr4A 94.624 93 4 1 1 92 664155950 664155858 5.140000e-30 143.0
8 TraesCS7A01G258500 chr5D 90.588 85 8 0 1953 2037 442203727 442203811 4.030000e-21 113.0
9 TraesCS7A01G258500 chr5D 88.172 93 6 5 1949 2039 464070861 464070950 6.750000e-19 106.0
10 TraesCS7A01G258500 chr5B 88.235 85 10 0 1953 2037 538397396 538397480 8.730000e-18 102.0
11 TraesCS7A01G258500 chr2D 88.372 86 9 1 1953 2038 425742569 425742653 8.730000e-18 102.0
12 TraesCS7A01G258500 chr1D 88.235 85 10 0 1953 2037 279101376 279101460 8.730000e-18 102.0
13 TraesCS7A01G258500 chr3D 87.209 86 11 0 1953 2038 45931417 45931332 1.130000e-16 99.0
14 TraesCS7A01G258500 chr3D 100.000 30 0 0 1023 1052 531043502 531043531 6.890000e-04 56.5
15 TraesCS7A01G258500 chr6B 90.476 42 4 0 436 477 658195297 658195256 6.890000e-04 56.5
16 TraesCS7A01G258500 chr3A 100.000 30 0 0 1023 1052 664683564 664683593 6.890000e-04 56.5
17 TraesCS7A01G258500 chr2B 100.000 30 0 0 450 479 793784390 793784419 6.890000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G258500 chr7A 249592549 249597478 4929 True 9105 9105 100.000 1 4930 1 chr7A.!!$R1 4929
1 TraesCS7A01G258500 chr7D 234804902 234809083 4181 True 6418 6418 94.338 723 4930 1 chr7D.!!$R1 4207
2 TraesCS7A01G258500 chr7B 210860594 210864908 4314 True 2142 2802 93.081 496 4928 3 chr7B.!!$R2 4432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 178 0.041238 ACCTCCATCGTCTTCCTCCA 59.959 55.0 0.00 0.0 0.00 3.86 F
402 403 0.100682 CTACTTAGCGCTCGCAGGAA 59.899 55.0 16.34 0.0 44.88 3.36 F
412 413 0.108615 CTCGCAGGAATCCAACGAGT 60.109 55.0 25.91 0.0 42.30 4.18 F
413 414 0.108804 TCGCAGGAATCCAACGAGTC 60.109 55.0 11.75 0.0 31.45 3.36 F
1718 1739 0.110486 TCTCAAGAGTTTGGTGGGGC 59.890 55.0 0.00 0.0 34.97 5.80 F
2286 2318 0.250209 CTCGATTCATGGGAGCAGGG 60.250 60.0 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1150 1161 0.105913 CCTCCTCCTCCTCCACTACC 60.106 65.000 0.00 0.00 0.00 3.18 R
1643 1658 0.953727 CAATATGGCATGGACCCACG 59.046 55.000 10.98 0.00 34.68 4.94 R
1809 1830 1.204062 CTTGCACGTACGGTTGCTG 59.796 57.895 25.27 16.66 0.00 4.41 R
2195 2227 1.342496 TCTTATCAGCCGAGCATCCAG 59.658 52.381 0.00 0.00 0.00 3.86 R
3182 3239 0.111061 TTGGTCTTGCTGGCATCTGT 59.889 50.000 0.00 0.00 0.00 3.41 R
4204 4261 1.625818 ACAGAATCTTGGTCTTCGCCT 59.374 47.619 0.00 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.989477 TCTCATGGTATGAACCCTAAACAG 58.011 41.667 0.00 0.00 46.16 3.16
24 25 5.104527 TCTCATGGTATGAACCCTAAACAGG 60.105 44.000 0.00 0.00 46.16 4.00
25 26 4.080015 TCATGGTATGAACCCTAAACAGGG 60.080 45.833 8.22 8.22 46.16 4.45
26 27 7.623124 TCATGGTATGAACCCTAAACAGGGC 62.623 48.000 9.71 0.00 46.16 5.19
31 32 4.434483 CCCTAAACAGGGCCAACC 57.566 61.111 6.18 0.00 42.99 3.77
44 45 3.966543 CAACCCCCGCACCTCCTT 61.967 66.667 0.00 0.00 0.00 3.36
45 46 3.966543 AACCCCCGCACCTCCTTG 61.967 66.667 0.00 0.00 0.00 3.61
46 47 4.974438 ACCCCCGCACCTCCTTGA 62.974 66.667 0.00 0.00 0.00 3.02
47 48 3.411517 CCCCCGCACCTCCTTGAT 61.412 66.667 0.00 0.00 0.00 2.57
48 49 2.190578 CCCCGCACCTCCTTGATC 59.809 66.667 0.00 0.00 0.00 2.92
49 50 2.669133 CCCCGCACCTCCTTGATCA 61.669 63.158 0.00 0.00 0.00 2.92
50 51 1.299648 CCCGCACCTCCTTGATCAA 59.700 57.895 8.12 8.12 0.00 2.57
51 52 0.322456 CCCGCACCTCCTTGATCAAA 60.322 55.000 9.88 0.00 0.00 2.69
52 53 1.683011 CCCGCACCTCCTTGATCAAAT 60.683 52.381 9.88 0.00 0.00 2.32
53 54 1.672881 CCGCACCTCCTTGATCAAATC 59.327 52.381 9.88 0.00 0.00 2.17
54 55 1.672881 CGCACCTCCTTGATCAAATCC 59.327 52.381 9.88 0.00 0.00 3.01
55 56 2.681976 CGCACCTCCTTGATCAAATCCT 60.682 50.000 9.88 0.00 0.00 3.24
56 57 2.948315 GCACCTCCTTGATCAAATCCTC 59.052 50.000 9.88 0.00 0.00 3.71
57 58 3.549794 CACCTCCTTGATCAAATCCTCC 58.450 50.000 9.88 0.00 0.00 4.30
58 59 3.054139 CACCTCCTTGATCAAATCCTCCA 60.054 47.826 9.88 0.00 0.00 3.86
59 60 3.054065 ACCTCCTTGATCAAATCCTCCAC 60.054 47.826 9.88 0.00 0.00 4.02
60 61 3.549794 CTCCTTGATCAAATCCTCCACC 58.450 50.000 9.88 0.00 0.00 4.61
61 62 3.192944 TCCTTGATCAAATCCTCCACCT 58.807 45.455 9.88 0.00 0.00 4.00
62 63 3.200825 TCCTTGATCAAATCCTCCACCTC 59.799 47.826 9.88 0.00 0.00 3.85
63 64 3.549794 CTTGATCAAATCCTCCACCTCC 58.450 50.000 9.88 0.00 0.00 4.30
64 65 1.846439 TGATCAAATCCTCCACCTCCC 59.154 52.381 0.00 0.00 0.00 4.30
65 66 1.846439 GATCAAATCCTCCACCTCCCA 59.154 52.381 0.00 0.00 0.00 4.37
66 67 1.289160 TCAAATCCTCCACCTCCCAG 58.711 55.000 0.00 0.00 0.00 4.45
67 68 1.203428 TCAAATCCTCCACCTCCCAGA 60.203 52.381 0.00 0.00 0.00 3.86
68 69 1.211457 CAAATCCTCCACCTCCCAGAG 59.789 57.143 0.00 0.00 0.00 3.35
69 70 0.719015 AATCCTCCACCTCCCAGAGA 59.281 55.000 0.00 0.00 0.00 3.10
70 71 0.264359 ATCCTCCACCTCCCAGAGAG 59.736 60.000 0.00 0.00 42.83 3.20
79 80 2.358322 CTCCCAGAGAGGTCTAGGTC 57.642 60.000 0.00 0.00 39.13 3.85
80 81 1.850345 CTCCCAGAGAGGTCTAGGTCT 59.150 57.143 0.00 0.00 39.13 3.85
81 82 2.243736 CTCCCAGAGAGGTCTAGGTCTT 59.756 54.545 0.00 0.00 39.13 3.01
82 83 2.242708 TCCCAGAGAGGTCTAGGTCTTC 59.757 54.545 0.00 0.00 33.49 2.87
83 84 2.243736 CCCAGAGAGGTCTAGGTCTTCT 59.756 54.545 0.00 0.00 34.66 2.85
84 85 3.309556 CCCAGAGAGGTCTAGGTCTTCTT 60.310 52.174 0.00 0.00 34.66 2.52
85 86 3.951680 CCAGAGAGGTCTAGGTCTTCTTC 59.048 52.174 0.00 0.00 0.00 2.87
86 87 4.325030 CCAGAGAGGTCTAGGTCTTCTTCT 60.325 50.000 0.00 0.00 0.00 2.85
87 88 5.261216 CAGAGAGGTCTAGGTCTTCTTCTT 58.739 45.833 0.00 0.00 0.00 2.52
88 89 5.357032 CAGAGAGGTCTAGGTCTTCTTCTTC 59.643 48.000 0.00 0.00 0.00 2.87
89 90 5.253096 AGAGAGGTCTAGGTCTTCTTCTTCT 59.747 44.000 0.00 0.00 0.00 2.85
90 91 5.899278 AGAGGTCTAGGTCTTCTTCTTCTT 58.101 41.667 0.00 0.00 0.00 2.52
91 92 5.949952 AGAGGTCTAGGTCTTCTTCTTCTTC 59.050 44.000 0.00 0.00 0.00 2.87
92 93 5.020795 AGGTCTAGGTCTTCTTCTTCTTCC 58.979 45.833 0.00 0.00 0.00 3.46
93 94 4.160814 GGTCTAGGTCTTCTTCTTCTTCCC 59.839 50.000 0.00 0.00 0.00 3.97
94 95 4.160814 GTCTAGGTCTTCTTCTTCTTCCCC 59.839 50.000 0.00 0.00 0.00 4.81
95 96 1.903183 AGGTCTTCTTCTTCTTCCCCG 59.097 52.381 0.00 0.00 0.00 5.73
96 97 1.624312 GGTCTTCTTCTTCTTCCCCGT 59.376 52.381 0.00 0.00 0.00 5.28
97 98 2.613223 GGTCTTCTTCTTCTTCCCCGTG 60.613 54.545 0.00 0.00 0.00 4.94
98 99 1.002087 TCTTCTTCTTCTTCCCCGTGC 59.998 52.381 0.00 0.00 0.00 5.34
99 100 0.762418 TTCTTCTTCTTCCCCGTGCA 59.238 50.000 0.00 0.00 0.00 4.57
100 101 0.762418 TCTTCTTCTTCCCCGTGCAA 59.238 50.000 0.00 0.00 0.00 4.08
101 102 1.142060 TCTTCTTCTTCCCCGTGCAAA 59.858 47.619 0.00 0.00 0.00 3.68
102 103 2.162681 CTTCTTCTTCCCCGTGCAAAT 58.837 47.619 0.00 0.00 0.00 2.32
103 104 2.286365 TCTTCTTCCCCGTGCAAATT 57.714 45.000 0.00 0.00 0.00 1.82
104 105 2.159382 TCTTCTTCCCCGTGCAAATTC 58.841 47.619 0.00 0.00 0.00 2.17
105 106 1.885887 CTTCTTCCCCGTGCAAATTCA 59.114 47.619 0.00 0.00 0.00 2.57
106 107 2.214376 TCTTCCCCGTGCAAATTCAT 57.786 45.000 0.00 0.00 0.00 2.57
107 108 1.818060 TCTTCCCCGTGCAAATTCATG 59.182 47.619 0.00 0.00 0.00 3.07
108 109 0.246086 TTCCCCGTGCAAATTCATGC 59.754 50.000 0.00 0.00 46.58 4.06
109 110 1.153588 CCCCGTGCAAATTCATGCC 60.154 57.895 0.00 0.00 45.83 4.40
110 111 1.606885 CCCCGTGCAAATTCATGCCT 61.607 55.000 0.00 0.00 45.83 4.75
111 112 0.247185 CCCGTGCAAATTCATGCCTT 59.753 50.000 0.00 0.00 45.83 4.35
112 113 1.352114 CCGTGCAAATTCATGCCTTG 58.648 50.000 0.00 0.00 45.83 3.61
113 114 1.067706 CCGTGCAAATTCATGCCTTGA 60.068 47.619 0.00 0.00 45.83 3.02
122 123 3.598019 TTCATGCCTTGAAAAGCATCC 57.402 42.857 0.00 0.00 44.44 3.51
123 124 2.811410 TCATGCCTTGAAAAGCATCCT 58.189 42.857 0.00 0.00 44.44 3.24
124 125 2.756760 TCATGCCTTGAAAAGCATCCTC 59.243 45.455 0.00 0.00 44.44 3.71
125 126 2.592102 TGCCTTGAAAAGCATCCTCT 57.408 45.000 0.00 0.00 44.44 3.69
126 127 3.719268 TGCCTTGAAAAGCATCCTCTA 57.281 42.857 0.00 0.00 44.44 2.43
127 128 3.614092 TGCCTTGAAAAGCATCCTCTAG 58.386 45.455 0.00 0.00 44.44 2.43
128 129 2.948315 GCCTTGAAAAGCATCCTCTAGG 59.052 50.000 0.00 0.00 44.44 3.02
129 130 3.549794 CCTTGAAAAGCATCCTCTAGGG 58.450 50.000 0.00 0.00 44.44 3.53
130 131 3.054065 CCTTGAAAAGCATCCTCTAGGGT 60.054 47.826 0.00 0.00 44.44 4.34
131 132 4.568592 CCTTGAAAAGCATCCTCTAGGGTT 60.569 45.833 0.00 0.00 44.44 4.11
132 133 3.955471 TGAAAAGCATCCTCTAGGGTTG 58.045 45.455 0.00 0.00 37.73 3.77
133 134 3.282885 GAAAAGCATCCTCTAGGGTTGG 58.717 50.000 0.00 0.00 35.80 3.77
134 135 2.270434 AAGCATCCTCTAGGGTTGGA 57.730 50.000 0.00 0.00 35.80 3.53
135 136 1.501582 AGCATCCTCTAGGGTTGGAC 58.498 55.000 0.00 0.00 35.80 4.02
136 137 0.470341 GCATCCTCTAGGGTTGGACC 59.530 60.000 0.00 0.00 35.80 4.46
137 138 1.879575 CATCCTCTAGGGTTGGACCA 58.120 55.000 0.00 0.00 41.02 4.02
138 139 1.765314 CATCCTCTAGGGTTGGACCAG 59.235 57.143 0.00 0.00 41.02 4.00
139 140 0.042731 TCCTCTAGGGTTGGACCAGG 59.957 60.000 0.00 0.00 41.02 4.45
140 141 0.983378 CCTCTAGGGTTGGACCAGGG 60.983 65.000 0.00 0.00 41.02 4.45
141 142 1.615424 TCTAGGGTTGGACCAGGGC 60.615 63.158 0.00 0.00 41.02 5.19
142 143 2.612746 TAGGGTTGGACCAGGGCC 60.613 66.667 3.29 3.29 41.02 5.80
143 144 3.508786 TAGGGTTGGACCAGGGCCA 62.509 63.158 11.42 11.42 41.02 5.36
144 145 4.678743 GGGTTGGACCAGGGCCAC 62.679 72.222 16.42 9.68 41.02 5.01
145 146 3.580319 GGTTGGACCAGGGCCACT 61.580 66.667 16.42 0.00 38.42 4.00
146 147 2.228480 GGTTGGACCAGGGCCACTA 61.228 63.158 16.42 0.00 38.42 2.74
147 148 1.571773 GGTTGGACCAGGGCCACTAT 61.572 60.000 16.42 0.00 38.42 2.12
148 149 0.394352 GTTGGACCAGGGCCACTATG 60.394 60.000 16.42 0.00 34.56 2.23
149 150 1.570857 TTGGACCAGGGCCACTATGG 61.571 60.000 16.42 7.22 41.55 2.74
151 152 3.741325 ACCAGGGCCACTATGGTC 58.259 61.111 9.28 0.00 43.94 4.02
157 158 3.421567 GGCCACTATGGTCCCAATC 57.578 57.895 0.00 0.00 40.46 2.67
158 159 0.550914 GGCCACTATGGTCCCAATCA 59.449 55.000 0.00 0.00 40.46 2.57
159 160 1.680338 GCCACTATGGTCCCAATCAC 58.320 55.000 0.00 0.00 40.46 3.06
160 161 1.750682 GCCACTATGGTCCCAATCACC 60.751 57.143 0.00 0.00 40.46 4.02
161 162 1.846439 CCACTATGGTCCCAATCACCT 59.154 52.381 0.00 0.00 34.66 4.00
162 163 2.158755 CCACTATGGTCCCAATCACCTC 60.159 54.545 0.00 0.00 34.66 3.85
163 164 2.127708 ACTATGGTCCCAATCACCTCC 58.872 52.381 0.00 0.00 34.66 4.30
164 165 2.126882 CTATGGTCCCAATCACCTCCA 58.873 52.381 0.00 0.00 34.66 3.86
165 166 1.612035 ATGGTCCCAATCACCTCCAT 58.388 50.000 0.00 0.00 34.66 3.41
166 167 0.918983 TGGTCCCAATCACCTCCATC 59.081 55.000 0.00 0.00 34.66 3.51
167 168 0.179045 GGTCCCAATCACCTCCATCG 60.179 60.000 0.00 0.00 0.00 3.84
168 169 0.541863 GTCCCAATCACCTCCATCGT 59.458 55.000 0.00 0.00 0.00 3.73
169 170 0.830648 TCCCAATCACCTCCATCGTC 59.169 55.000 0.00 0.00 0.00 4.20
170 171 0.833287 CCCAATCACCTCCATCGTCT 59.167 55.000 0.00 0.00 0.00 4.18
171 172 1.210478 CCCAATCACCTCCATCGTCTT 59.790 52.381 0.00 0.00 0.00 3.01
172 173 2.555199 CCAATCACCTCCATCGTCTTC 58.445 52.381 0.00 0.00 0.00 2.87
173 174 2.555199 CAATCACCTCCATCGTCTTCC 58.445 52.381 0.00 0.00 0.00 3.46
174 175 2.166907 ATCACCTCCATCGTCTTCCT 57.833 50.000 0.00 0.00 0.00 3.36
175 176 1.475403 TCACCTCCATCGTCTTCCTC 58.525 55.000 0.00 0.00 0.00 3.71
176 177 0.461961 CACCTCCATCGTCTTCCTCC 59.538 60.000 0.00 0.00 0.00 4.30
177 178 0.041238 ACCTCCATCGTCTTCCTCCA 59.959 55.000 0.00 0.00 0.00 3.86
178 179 1.343478 ACCTCCATCGTCTTCCTCCAT 60.343 52.381 0.00 0.00 0.00 3.41
179 180 2.091278 ACCTCCATCGTCTTCCTCCATA 60.091 50.000 0.00 0.00 0.00 2.74
180 181 3.169099 CCTCCATCGTCTTCCTCCATAT 58.831 50.000 0.00 0.00 0.00 1.78
181 182 3.194542 CCTCCATCGTCTTCCTCCATATC 59.805 52.174 0.00 0.00 0.00 1.63
182 183 3.829026 CTCCATCGTCTTCCTCCATATCA 59.171 47.826 0.00 0.00 0.00 2.15
183 184 3.829026 TCCATCGTCTTCCTCCATATCAG 59.171 47.826 0.00 0.00 0.00 2.90
184 185 3.583806 CATCGTCTTCCTCCATATCAGC 58.416 50.000 0.00 0.00 0.00 4.26
185 186 1.964223 TCGTCTTCCTCCATATCAGCC 59.036 52.381 0.00 0.00 0.00 4.85
186 187 1.967066 CGTCTTCCTCCATATCAGCCT 59.033 52.381 0.00 0.00 0.00 4.58
187 188 2.029470 CGTCTTCCTCCATATCAGCCTC 60.029 54.545 0.00 0.00 0.00 4.70
188 189 2.301583 GTCTTCCTCCATATCAGCCTCC 59.698 54.545 0.00 0.00 0.00 4.30
189 190 2.180973 TCTTCCTCCATATCAGCCTCCT 59.819 50.000 0.00 0.00 0.00 3.69
190 191 2.317371 TCCTCCATATCAGCCTCCTC 57.683 55.000 0.00 0.00 0.00 3.71
191 192 1.203237 TCCTCCATATCAGCCTCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
192 193 0.894141 CTCCATATCAGCCTCCTCCG 59.106 60.000 0.00 0.00 0.00 4.63
193 194 0.482887 TCCATATCAGCCTCCTCCGA 59.517 55.000 0.00 0.00 0.00 4.55
194 195 1.077828 TCCATATCAGCCTCCTCCGAT 59.922 52.381 0.00 0.00 0.00 4.18
195 196 1.206610 CCATATCAGCCTCCTCCGATG 59.793 57.143 0.00 0.00 0.00 3.84
196 197 1.898472 CATATCAGCCTCCTCCGATGT 59.102 52.381 0.00 0.00 0.00 3.06
197 198 2.088104 TATCAGCCTCCTCCGATGTT 57.912 50.000 0.00 0.00 0.00 2.71
198 199 0.467384 ATCAGCCTCCTCCGATGTTG 59.533 55.000 0.00 0.00 0.00 3.33
199 200 1.153289 CAGCCTCCTCCGATGTTGG 60.153 63.158 0.00 0.00 0.00 3.77
200 201 2.514824 GCCTCCTCCGATGTTGGC 60.515 66.667 0.00 0.00 0.00 4.52
201 202 2.989639 CCTCCTCCGATGTTGGCA 59.010 61.111 0.00 0.00 0.00 4.92
202 203 1.153289 CCTCCTCCGATGTTGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
203 204 1.817099 CTCCTCCGATGTTGGCAGC 60.817 63.158 0.00 0.00 0.00 5.25
221 222 4.847444 GCCTCCGCAGCCTTCTCC 62.847 72.222 0.00 0.00 34.03 3.71
222 223 3.080121 CCTCCGCAGCCTTCTCCT 61.080 66.667 0.00 0.00 0.00 3.69
223 224 2.498726 CTCCGCAGCCTTCTCCTC 59.501 66.667 0.00 0.00 0.00 3.71
224 225 3.423162 CTCCGCAGCCTTCTCCTCG 62.423 68.421 0.00 0.00 0.00 4.63
225 226 4.521062 CCGCAGCCTTCTCCTCGG 62.521 72.222 0.00 0.00 0.00 4.63
226 227 4.521062 CGCAGCCTTCTCCTCGGG 62.521 72.222 0.00 0.00 0.00 5.14
227 228 4.847444 GCAGCCTTCTCCTCGGGC 62.847 72.222 0.00 0.00 45.57 6.13
238 239 3.154473 CTCGGGCGGAGGATTGGA 61.154 66.667 13.81 0.00 39.22 3.53
239 240 2.445845 TCGGGCGGAGGATTGGAT 60.446 61.111 0.00 0.00 0.00 3.41
240 241 2.044806 CTCGGGCGGAGGATTGGATT 62.045 60.000 13.81 0.00 39.22 3.01
241 242 1.893808 CGGGCGGAGGATTGGATTG 60.894 63.158 0.00 0.00 0.00 2.67
242 243 1.227383 GGGCGGAGGATTGGATTGT 59.773 57.895 0.00 0.00 0.00 2.71
243 244 0.819666 GGGCGGAGGATTGGATTGTC 60.820 60.000 0.00 0.00 0.00 3.18
244 245 0.181350 GGCGGAGGATTGGATTGTCT 59.819 55.000 0.00 0.00 0.00 3.41
245 246 1.303309 GCGGAGGATTGGATTGTCTG 58.697 55.000 0.00 0.00 0.00 3.51
246 247 1.303309 CGGAGGATTGGATTGTCTGC 58.697 55.000 0.00 0.00 0.00 4.26
247 248 1.134280 CGGAGGATTGGATTGTCTGCT 60.134 52.381 0.00 0.00 0.00 4.24
248 249 2.570135 GGAGGATTGGATTGTCTGCTC 58.430 52.381 0.00 0.00 0.00 4.26
249 250 2.570135 GAGGATTGGATTGTCTGCTCC 58.430 52.381 0.00 0.00 0.00 4.70
250 251 1.213926 AGGATTGGATTGTCTGCTCCC 59.786 52.381 0.00 0.00 0.00 4.30
251 252 1.685148 GATTGGATTGTCTGCTCCCC 58.315 55.000 0.00 0.00 0.00 4.81
252 253 0.107017 ATTGGATTGTCTGCTCCCCG 60.107 55.000 0.00 0.00 0.00 5.73
253 254 1.198094 TTGGATTGTCTGCTCCCCGA 61.198 55.000 0.00 0.00 0.00 5.14
254 255 0.982852 TGGATTGTCTGCTCCCCGAT 60.983 55.000 0.00 0.00 0.00 4.18
255 256 0.250081 GGATTGTCTGCTCCCCGATC 60.250 60.000 0.00 0.00 0.00 3.69
256 257 0.755686 GATTGTCTGCTCCCCGATCT 59.244 55.000 0.00 0.00 0.00 2.75
257 258 0.755686 ATTGTCTGCTCCCCGATCTC 59.244 55.000 0.00 0.00 0.00 2.75
258 259 1.667154 TTGTCTGCTCCCCGATCTCG 61.667 60.000 0.00 0.00 39.44 4.04
259 260 2.122167 GTCTGCTCCCCGATCTCGT 61.122 63.158 0.00 0.00 37.74 4.18
260 261 1.379977 TCTGCTCCCCGATCTCGTT 60.380 57.895 0.00 0.00 37.74 3.85
261 262 0.970937 TCTGCTCCCCGATCTCGTTT 60.971 55.000 0.00 0.00 37.74 3.60
262 263 0.528684 CTGCTCCCCGATCTCGTTTC 60.529 60.000 0.00 0.00 37.74 2.78
263 264 1.227292 GCTCCCCGATCTCGTTTCC 60.227 63.158 0.00 0.00 37.74 3.13
264 265 1.677637 GCTCCCCGATCTCGTTTCCT 61.678 60.000 0.00 0.00 37.74 3.36
265 266 0.386113 CTCCCCGATCTCGTTTCCTC 59.614 60.000 0.00 0.00 37.74 3.71
266 267 1.041447 TCCCCGATCTCGTTTCCTCC 61.041 60.000 0.00 0.00 37.74 4.30
267 268 1.043673 CCCCGATCTCGTTTCCTCCT 61.044 60.000 0.00 0.00 37.74 3.69
268 269 0.103208 CCCGATCTCGTTTCCTCCTG 59.897 60.000 0.00 0.00 37.74 3.86
269 270 0.528684 CCGATCTCGTTTCCTCCTGC 60.529 60.000 0.00 0.00 37.74 4.85
270 271 0.867753 CGATCTCGTTTCCTCCTGCG 60.868 60.000 0.00 0.00 34.11 5.18
271 272 1.148759 GATCTCGTTTCCTCCTGCGC 61.149 60.000 0.00 0.00 0.00 6.09
272 273 2.579684 ATCTCGTTTCCTCCTGCGCC 62.580 60.000 4.18 0.00 0.00 6.53
273 274 3.302347 CTCGTTTCCTCCTGCGCCT 62.302 63.158 4.18 0.00 0.00 5.52
274 275 2.815647 CGTTTCCTCCTGCGCCTC 60.816 66.667 4.18 0.00 0.00 4.70
275 276 2.436824 GTTTCCTCCTGCGCCTCC 60.437 66.667 4.18 0.00 0.00 4.30
276 277 3.717294 TTTCCTCCTGCGCCTCCC 61.717 66.667 4.18 0.00 0.00 4.30
296 297 1.674057 CCCCCTCGTATGCATCTCC 59.326 63.158 0.19 0.00 0.00 3.71
297 298 0.833834 CCCCCTCGTATGCATCTCCT 60.834 60.000 0.19 0.00 0.00 3.69
298 299 1.051812 CCCCTCGTATGCATCTCCTT 58.948 55.000 0.19 0.00 0.00 3.36
299 300 1.001406 CCCCTCGTATGCATCTCCTTC 59.999 57.143 0.19 0.00 0.00 3.46
300 301 1.336332 CCCTCGTATGCATCTCCTTCG 60.336 57.143 0.19 0.35 0.00 3.79
301 302 1.338337 CCTCGTATGCATCTCCTTCGT 59.662 52.381 0.19 0.00 0.00 3.85
302 303 2.605823 CCTCGTATGCATCTCCTTCGTC 60.606 54.545 0.19 0.00 0.00 4.20
303 304 1.337071 TCGTATGCATCTCCTTCGTCC 59.663 52.381 0.19 0.00 0.00 4.79
304 305 1.603172 CGTATGCATCTCCTTCGTCCC 60.603 57.143 0.19 0.00 0.00 4.46
305 306 1.689273 GTATGCATCTCCTTCGTCCCT 59.311 52.381 0.19 0.00 0.00 4.20
306 307 1.207791 ATGCATCTCCTTCGTCCCTT 58.792 50.000 0.00 0.00 0.00 3.95
307 308 0.537188 TGCATCTCCTTCGTCCCTTC 59.463 55.000 0.00 0.00 0.00 3.46
308 309 0.179070 GCATCTCCTTCGTCCCTTCC 60.179 60.000 0.00 0.00 0.00 3.46
309 310 1.490574 CATCTCCTTCGTCCCTTCCT 58.509 55.000 0.00 0.00 0.00 3.36
310 311 1.834263 CATCTCCTTCGTCCCTTCCTT 59.166 52.381 0.00 0.00 0.00 3.36
311 312 1.558233 TCTCCTTCGTCCCTTCCTTC 58.442 55.000 0.00 0.00 0.00 3.46
312 313 1.203137 TCTCCTTCGTCCCTTCCTTCA 60.203 52.381 0.00 0.00 0.00 3.02
313 314 1.623811 CTCCTTCGTCCCTTCCTTCAA 59.376 52.381 0.00 0.00 0.00 2.69
314 315 1.623811 TCCTTCGTCCCTTCCTTCAAG 59.376 52.381 0.00 0.00 0.00 3.02
315 316 1.443802 CTTCGTCCCTTCCTTCAAGC 58.556 55.000 0.00 0.00 0.00 4.01
316 317 1.002544 CTTCGTCCCTTCCTTCAAGCT 59.997 52.381 0.00 0.00 0.00 3.74
317 318 0.608640 TCGTCCCTTCCTTCAAGCTC 59.391 55.000 0.00 0.00 0.00 4.09
318 319 0.737715 CGTCCCTTCCTTCAAGCTCG 60.738 60.000 0.00 0.00 0.00 5.03
319 320 0.321996 GTCCCTTCCTTCAAGCTCGT 59.678 55.000 0.00 0.00 0.00 4.18
320 321 1.056660 TCCCTTCCTTCAAGCTCGTT 58.943 50.000 0.00 0.00 0.00 3.85
321 322 1.420138 TCCCTTCCTTCAAGCTCGTTT 59.580 47.619 0.00 0.00 0.00 3.60
322 323 1.807142 CCCTTCCTTCAAGCTCGTTTC 59.193 52.381 0.00 0.00 0.00 2.78
323 324 2.494059 CCTTCCTTCAAGCTCGTTTCA 58.506 47.619 0.00 0.00 0.00 2.69
324 325 2.878406 CCTTCCTTCAAGCTCGTTTCAA 59.122 45.455 0.00 0.00 0.00 2.69
325 326 3.503748 CCTTCCTTCAAGCTCGTTTCAAT 59.496 43.478 0.00 0.00 0.00 2.57
326 327 4.695455 CCTTCCTTCAAGCTCGTTTCAATA 59.305 41.667 0.00 0.00 0.00 1.90
327 328 5.390991 CCTTCCTTCAAGCTCGTTTCAATAC 60.391 44.000 0.00 0.00 0.00 1.89
328 329 4.894784 TCCTTCAAGCTCGTTTCAATACT 58.105 39.130 0.00 0.00 0.00 2.12
329 330 4.929808 TCCTTCAAGCTCGTTTCAATACTC 59.070 41.667 0.00 0.00 0.00 2.59
330 331 4.201628 CCTTCAAGCTCGTTTCAATACTCG 60.202 45.833 0.00 0.00 0.00 4.18
331 332 4.168922 TCAAGCTCGTTTCAATACTCGA 57.831 40.909 0.00 0.00 0.00 4.04
332 333 4.552355 TCAAGCTCGTTTCAATACTCGAA 58.448 39.130 0.00 0.00 32.12 3.71
333 334 4.384846 TCAAGCTCGTTTCAATACTCGAAC 59.615 41.667 0.00 0.00 32.12 3.95
334 335 3.251571 AGCTCGTTTCAATACTCGAACC 58.748 45.455 0.00 0.00 32.12 3.62
335 336 3.056749 AGCTCGTTTCAATACTCGAACCT 60.057 43.478 0.00 0.00 32.12 3.50
336 337 3.303760 GCTCGTTTCAATACTCGAACCTC 59.696 47.826 0.00 0.00 32.12 3.85
337 338 4.734917 CTCGTTTCAATACTCGAACCTCT 58.265 43.478 0.00 0.00 32.12 3.69
338 339 4.730657 TCGTTTCAATACTCGAACCTCTC 58.269 43.478 0.00 0.00 0.00 3.20
346 347 3.130227 CGAACCTCTCGGATCCCC 58.870 66.667 6.06 0.00 44.20 4.81
347 348 2.499827 CGAACCTCTCGGATCCCCC 61.500 68.421 6.06 0.00 44.20 5.40
348 349 1.382695 GAACCTCTCGGATCCCCCA 60.383 63.158 6.06 0.00 34.14 4.96
349 350 0.764752 GAACCTCTCGGATCCCCCAT 60.765 60.000 6.06 0.00 34.14 4.00
350 351 1.056700 AACCTCTCGGATCCCCCATG 61.057 60.000 6.06 0.00 34.14 3.66
351 352 2.746359 CTCTCGGATCCCCCATGC 59.254 66.667 6.06 0.00 34.14 4.06
352 353 2.040988 TCTCGGATCCCCCATGCA 60.041 61.111 6.06 0.00 34.14 3.96
353 354 1.692395 TCTCGGATCCCCCATGCAA 60.692 57.895 6.06 0.00 34.14 4.08
354 355 1.061905 TCTCGGATCCCCCATGCAAT 61.062 55.000 6.06 0.00 34.14 3.56
355 356 0.607489 CTCGGATCCCCCATGCAATC 60.607 60.000 6.06 0.00 34.14 2.67
356 357 1.151221 CGGATCCCCCATGCAATCA 59.849 57.895 6.06 0.00 34.14 2.57
357 358 1.174712 CGGATCCCCCATGCAATCAC 61.175 60.000 6.06 0.00 34.14 3.06
358 359 0.829182 GGATCCCCCATGCAATCACC 60.829 60.000 0.00 0.00 34.14 4.02
359 360 1.152694 ATCCCCCATGCAATCACCG 60.153 57.895 0.00 0.00 0.00 4.94
360 361 1.936767 ATCCCCCATGCAATCACCGT 61.937 55.000 0.00 0.00 0.00 4.83
361 362 1.225983 CCCCCATGCAATCACCGTA 59.774 57.895 0.00 0.00 0.00 4.02
362 363 1.101049 CCCCCATGCAATCACCGTAC 61.101 60.000 0.00 0.00 0.00 3.67
363 364 1.101049 CCCCATGCAATCACCGTACC 61.101 60.000 0.00 0.00 0.00 3.34
364 365 0.393673 CCCATGCAATCACCGTACCA 60.394 55.000 0.00 0.00 0.00 3.25
365 366 1.458398 CCATGCAATCACCGTACCAA 58.542 50.000 0.00 0.00 0.00 3.67
366 367 1.401552 CCATGCAATCACCGTACCAAG 59.598 52.381 0.00 0.00 0.00 3.61
367 368 1.401552 CATGCAATCACCGTACCAAGG 59.598 52.381 0.00 0.00 0.00 3.61
368 369 0.687920 TGCAATCACCGTACCAAGGA 59.312 50.000 0.00 0.00 0.00 3.36
369 370 1.084289 GCAATCACCGTACCAAGGAC 58.916 55.000 0.00 0.00 0.00 3.85
370 371 1.609580 GCAATCACCGTACCAAGGACA 60.610 52.381 0.00 0.00 0.00 4.02
371 372 2.939640 GCAATCACCGTACCAAGGACAT 60.940 50.000 0.00 0.00 0.00 3.06
372 373 2.677836 CAATCACCGTACCAAGGACATG 59.322 50.000 0.00 0.00 0.00 3.21
373 374 1.634960 TCACCGTACCAAGGACATGA 58.365 50.000 0.00 0.00 0.00 3.07
374 375 1.548719 TCACCGTACCAAGGACATGAG 59.451 52.381 0.00 0.00 0.00 2.90
375 376 0.902531 ACCGTACCAAGGACATGAGG 59.097 55.000 0.00 0.00 0.00 3.86
376 377 0.902531 CCGTACCAAGGACATGAGGT 59.097 55.000 0.00 1.81 38.14 3.85
377 378 1.278127 CCGTACCAAGGACATGAGGTT 59.722 52.381 0.00 0.00 35.62 3.50
378 379 2.346803 CGTACCAAGGACATGAGGTTG 58.653 52.381 0.00 0.00 35.62 3.77
379 380 2.289444 CGTACCAAGGACATGAGGTTGT 60.289 50.000 0.00 0.00 35.62 3.32
380 381 3.056393 CGTACCAAGGACATGAGGTTGTA 60.056 47.826 0.00 0.00 35.62 2.41
381 382 3.703001 ACCAAGGACATGAGGTTGTAG 57.297 47.619 0.00 0.00 0.00 2.74
382 383 2.979678 ACCAAGGACATGAGGTTGTAGT 59.020 45.455 0.00 0.00 0.00 2.73
383 384 3.008049 ACCAAGGACATGAGGTTGTAGTC 59.992 47.826 0.00 0.00 0.00 2.59
384 385 3.261897 CCAAGGACATGAGGTTGTAGTCT 59.738 47.826 0.00 0.00 0.00 3.24
385 386 4.466370 CCAAGGACATGAGGTTGTAGTCTA 59.534 45.833 0.00 0.00 0.00 2.59
386 387 5.411781 CAAGGACATGAGGTTGTAGTCTAC 58.588 45.833 0.00 2.81 0.00 2.59
387 388 4.936802 AGGACATGAGGTTGTAGTCTACT 58.063 43.478 11.28 0.00 0.00 2.57
388 389 5.334421 AGGACATGAGGTTGTAGTCTACTT 58.666 41.667 11.28 0.00 0.00 2.24
389 390 6.491383 AGGACATGAGGTTGTAGTCTACTTA 58.509 40.000 11.28 0.00 0.00 2.24
390 391 6.603997 AGGACATGAGGTTGTAGTCTACTTAG 59.396 42.308 11.28 0.00 0.00 2.18
391 392 6.210287 ACATGAGGTTGTAGTCTACTTAGC 57.790 41.667 11.28 8.66 0.00 3.09
392 393 4.959596 TGAGGTTGTAGTCTACTTAGCG 57.040 45.455 11.28 0.00 0.00 4.26
393 394 3.128242 TGAGGTTGTAGTCTACTTAGCGC 59.872 47.826 11.28 0.00 0.00 5.92
394 395 3.354467 AGGTTGTAGTCTACTTAGCGCT 58.646 45.455 17.26 17.26 0.00 5.92
395 396 3.377798 AGGTTGTAGTCTACTTAGCGCTC 59.622 47.826 16.34 0.00 0.00 5.03
396 397 3.352652 GTTGTAGTCTACTTAGCGCTCG 58.647 50.000 16.34 9.49 0.00 5.03
397 398 1.329906 TGTAGTCTACTTAGCGCTCGC 59.670 52.381 16.34 6.09 42.33 5.03
398 399 1.329906 GTAGTCTACTTAGCGCTCGCA 59.670 52.381 16.34 0.00 44.88 5.10
399 400 0.378962 AGTCTACTTAGCGCTCGCAG 59.621 55.000 16.34 11.72 44.88 5.18
400 401 0.592754 GTCTACTTAGCGCTCGCAGG 60.593 60.000 16.34 0.00 44.88 4.85
401 402 0.746923 TCTACTTAGCGCTCGCAGGA 60.747 55.000 16.34 4.28 44.88 3.86
402 403 0.100682 CTACTTAGCGCTCGCAGGAA 59.899 55.000 16.34 0.00 44.88 3.36
403 404 0.744874 TACTTAGCGCTCGCAGGAAT 59.255 50.000 16.34 0.00 44.88 3.01
404 405 0.528684 ACTTAGCGCTCGCAGGAATC 60.529 55.000 16.34 0.00 44.88 2.52
405 406 1.218230 CTTAGCGCTCGCAGGAATCC 61.218 60.000 16.34 0.00 44.88 3.01
406 407 1.955495 TTAGCGCTCGCAGGAATCCA 61.955 55.000 16.34 0.00 44.88 3.41
407 408 1.955495 TAGCGCTCGCAGGAATCCAA 61.955 55.000 16.34 0.00 44.88 3.53
408 409 3.093278 CGCTCGCAGGAATCCAAC 58.907 61.111 0.61 0.00 0.00 3.77
409 410 2.802667 CGCTCGCAGGAATCCAACG 61.803 63.158 0.61 4.73 0.00 4.10
410 411 1.447838 GCTCGCAGGAATCCAACGA 60.448 57.895 14.39 14.39 33.43 3.85
411 412 1.424493 GCTCGCAGGAATCCAACGAG 61.424 60.000 28.31 28.31 46.54 4.18
412 413 0.108615 CTCGCAGGAATCCAACGAGT 60.109 55.000 25.91 0.00 42.30 4.18
413 414 0.108804 TCGCAGGAATCCAACGAGTC 60.109 55.000 11.75 0.00 31.45 3.36
414 415 1.413767 CGCAGGAATCCAACGAGTCG 61.414 60.000 11.85 11.85 33.83 4.18
415 416 0.108804 GCAGGAATCCAACGAGTCGA 60.109 55.000 21.50 0.00 33.83 4.20
416 417 1.471676 GCAGGAATCCAACGAGTCGAT 60.472 52.381 21.50 3.95 33.83 3.59
417 418 2.196749 CAGGAATCCAACGAGTCGATG 58.803 52.381 21.50 18.03 33.83 3.84
422 423 3.507597 CCAACGAGTCGATGGTGAA 57.492 52.632 28.29 0.00 43.21 3.18
423 424 1.790755 CCAACGAGTCGATGGTGAAA 58.209 50.000 28.29 0.00 43.21 2.69
424 425 2.139917 CCAACGAGTCGATGGTGAAAA 58.860 47.619 28.29 0.00 43.21 2.29
425 426 2.742053 CCAACGAGTCGATGGTGAAAAT 59.258 45.455 28.29 0.00 43.21 1.82
426 427 3.930229 CCAACGAGTCGATGGTGAAAATA 59.070 43.478 28.29 0.00 43.21 1.40
427 428 4.570772 CCAACGAGTCGATGGTGAAAATAT 59.429 41.667 28.29 0.00 43.21 1.28
428 429 5.492854 CAACGAGTCGATGGTGAAAATATG 58.507 41.667 21.50 0.00 0.00 1.78
429 430 4.755411 ACGAGTCGATGGTGAAAATATGT 58.245 39.130 21.50 0.00 0.00 2.29
430 431 4.566759 ACGAGTCGATGGTGAAAATATGTG 59.433 41.667 21.50 0.00 0.00 3.21
431 432 4.025730 CGAGTCGATGGTGAAAATATGTGG 60.026 45.833 6.73 0.00 0.00 4.17
432 433 5.097742 AGTCGATGGTGAAAATATGTGGA 57.902 39.130 0.00 0.00 0.00 4.02
433 434 4.876107 AGTCGATGGTGAAAATATGTGGAC 59.124 41.667 0.00 0.00 0.00 4.02
434 435 4.876107 GTCGATGGTGAAAATATGTGGACT 59.124 41.667 0.00 0.00 0.00 3.85
435 436 5.006746 GTCGATGGTGAAAATATGTGGACTC 59.993 44.000 0.00 0.00 0.00 3.36
436 437 4.273480 CGATGGTGAAAATATGTGGACTCC 59.727 45.833 0.00 0.00 0.00 3.85
437 438 3.605634 TGGTGAAAATATGTGGACTCCG 58.394 45.455 0.00 0.00 0.00 4.63
438 439 3.008594 TGGTGAAAATATGTGGACTCCGT 59.991 43.478 0.00 0.00 0.00 4.69
439 440 3.621715 GGTGAAAATATGTGGACTCCGTC 59.378 47.826 0.00 0.00 0.00 4.79
440 441 3.306166 GTGAAAATATGTGGACTCCGTCG 59.694 47.826 0.00 0.00 32.65 5.12
441 442 2.596904 AAATATGTGGACTCCGTCGG 57.403 50.000 4.39 4.39 32.65 4.79
442 443 1.771565 AATATGTGGACTCCGTCGGA 58.228 50.000 14.54 14.54 32.65 4.55
451 452 3.112965 CTCCGTCGGAGGATAAGGT 57.887 57.895 30.23 0.00 45.43 3.50
452 453 2.267174 CTCCGTCGGAGGATAAGGTA 57.733 55.000 30.23 0.00 45.43 3.08
453 454 2.152830 CTCCGTCGGAGGATAAGGTAG 58.847 57.143 30.23 4.48 45.43 3.18
454 455 1.770658 TCCGTCGGAGGATAAGGTAGA 59.229 52.381 10.71 0.00 34.92 2.59
455 456 1.878734 CCGTCGGAGGATAAGGTAGAC 59.121 57.143 4.91 0.00 0.00 2.59
456 457 1.878734 CGTCGGAGGATAAGGTAGACC 59.121 57.143 0.00 0.00 0.00 3.85
457 458 2.237643 GTCGGAGGATAAGGTAGACCC 58.762 57.143 0.00 0.00 36.42 4.46
459 460 3.073650 GTCGGAGGATAAGGTAGACCCTA 59.926 52.174 0.00 0.00 45.47 3.53
460 461 3.330110 TCGGAGGATAAGGTAGACCCTAG 59.670 52.174 0.00 0.00 45.47 3.02
461 462 3.561744 CGGAGGATAAGGTAGACCCTAGG 60.562 56.522 0.06 0.06 45.47 3.02
462 463 3.245694 GGAGGATAAGGTAGACCCTAGGG 60.246 56.522 27.36 27.36 45.47 3.53
463 464 3.661654 GAGGATAAGGTAGACCCTAGGGA 59.338 52.174 35.38 9.56 45.47 4.20
464 465 4.067549 AGGATAAGGTAGACCCTAGGGAA 58.932 47.826 35.38 16.07 45.47 3.97
465 466 4.488805 AGGATAAGGTAGACCCTAGGGAAA 59.511 45.833 35.38 15.70 45.47 3.13
466 467 4.592351 GGATAAGGTAGACCCTAGGGAAAC 59.408 50.000 35.38 25.07 45.47 2.78
467 468 2.564872 AGGTAGACCCTAGGGAAACC 57.435 55.000 35.38 31.36 43.87 3.27
468 469 1.009306 AGGTAGACCCTAGGGAAACCC 59.991 57.143 35.38 25.02 45.13 4.11
469 470 3.395203 AGGTAGACCCTAGGGAAACCCT 61.395 54.545 35.38 26.66 45.13 4.34
488 489 4.276058 CCTAGGGGAAAACTTTACGTCA 57.724 45.455 0.00 0.00 33.58 4.35
489 490 4.251268 CCTAGGGGAAAACTTTACGTCAG 58.749 47.826 0.00 0.00 33.58 3.51
490 491 3.851458 AGGGGAAAACTTTACGTCAGT 57.149 42.857 0.00 0.00 0.00 3.41
491 492 3.473625 AGGGGAAAACTTTACGTCAGTG 58.526 45.455 0.00 0.00 0.00 3.66
492 493 2.031420 GGGGAAAACTTTACGTCAGTGC 60.031 50.000 0.00 0.00 0.00 4.40
493 494 2.031420 GGGAAAACTTTACGTCAGTGCC 60.031 50.000 0.00 0.00 0.00 5.01
494 495 2.876550 GGAAAACTTTACGTCAGTGCCT 59.123 45.455 0.00 0.00 0.00 4.75
503 504 0.320771 CGTCAGTGCCTAGCCTGTTT 60.321 55.000 5.41 0.00 31.92 2.83
514 515 4.384056 CCTAGCCTGTTTATGTCATCCTG 58.616 47.826 0.00 0.00 0.00 3.86
515 516 4.101585 CCTAGCCTGTTTATGTCATCCTGA 59.898 45.833 0.00 0.00 0.00 3.86
541 544 4.081198 TGCAAACACAACCAAGAAATCCTT 60.081 37.500 0.00 0.00 34.91 3.36
547 550 0.698818 ACCAAGAAATCCTTCGGCCT 59.301 50.000 0.00 0.00 36.61 5.19
551 554 2.939103 CAAGAAATCCTTCGGCCTGTAG 59.061 50.000 0.00 0.00 36.61 2.74
560 563 1.227263 CGGCCTGTAGGAATGGACG 60.227 63.158 0.00 0.00 46.31 4.79
574 577 3.771160 GACGGAGACACGGCCCAT 61.771 66.667 0.00 0.00 35.36 4.00
575 578 3.718210 GACGGAGACACGGCCCATC 62.718 68.421 0.00 0.00 35.36 3.51
603 606 1.593209 AGCTTTTCGTCCAACGCGA 60.593 52.632 15.93 0.00 42.21 5.87
614 617 1.529438 TCCAACGCGATGAGAACAAAC 59.471 47.619 18.77 0.00 0.00 2.93
654 658 4.038080 GCCGGCAAACGTCCCTTG 62.038 66.667 24.80 0.00 42.24 3.61
666 670 1.344763 CGTCCCTTGGGAGGATGATAC 59.655 57.143 20.31 1.76 46.74 2.24
670 674 2.107204 CCCTTGGGAGGATGATACTTGG 59.893 54.545 0.00 0.00 46.74 3.61
671 675 3.048600 CCTTGGGAGGATGATACTTGGA 58.951 50.000 0.00 0.00 46.74 3.53
672 676 3.459598 CCTTGGGAGGATGATACTTGGAA 59.540 47.826 0.00 0.00 46.74 3.53
681 685 7.340487 GGAGGATGATACTTGGAAACATTTCTT 59.660 37.037 4.45 0.00 42.32 2.52
762 772 4.518970 TGTGAAATTTGCCCTCTTCACTAC 59.481 41.667 13.23 0.00 45.09 2.73
774 785 6.472887 CCCTCTTCACTACAAGGAATTGTAA 58.527 40.000 2.79 0.00 37.01 2.41
801 812 3.900116 CCGCAACATAAAATATCGCGAAG 59.100 43.478 15.24 0.00 43.64 3.79
892 903 2.252260 CCACGAAGCCAAAGCACG 59.748 61.111 0.00 0.00 43.56 5.34
1149 1160 2.285743 GAAGGGGCAGGAGGAGGT 60.286 66.667 0.00 0.00 0.00 3.85
1150 1161 2.612115 AAGGGGCAGGAGGAGGTG 60.612 66.667 0.00 0.00 0.00 4.00
1151 1162 4.748798 AGGGGCAGGAGGAGGTGG 62.749 72.222 0.00 0.00 0.00 4.61
1153 1164 2.040606 GGGCAGGAGGAGGTGGTA 59.959 66.667 0.00 0.00 0.00 3.25
1154 1165 2.066999 GGGCAGGAGGAGGTGGTAG 61.067 68.421 0.00 0.00 0.00 3.18
1155 1166 1.306226 GGCAGGAGGAGGTGGTAGT 60.306 63.158 0.00 0.00 0.00 2.73
1176 1187 2.123033 GGAGGAGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
1339 1353 0.693049 AACCCCGAAGACATTGCTCT 59.307 50.000 0.00 0.00 0.00 4.09
1348 1362 4.437930 CGAAGACATTGCTCTCATTTTCCC 60.438 45.833 0.00 0.00 0.00 3.97
1394 1408 3.620300 CTGTGCAATGCGGTGCCAG 62.620 63.158 8.77 10.83 44.26 4.85
1472 1487 4.098416 GCTCCGTGCAAAGATTTGATTAC 58.902 43.478 9.44 4.18 40.55 1.89
1524 1539 0.390340 TCGTGCTCTGGCTGTTCATC 60.390 55.000 0.00 0.00 39.59 2.92
1580 1595 7.545965 TCGTCTTCAAATTTAGGAGAAGCTTAG 59.454 37.037 0.00 0.00 37.86 2.18
1643 1658 1.402852 GCTCAAGGTTTTGGCGGATTC 60.403 52.381 0.00 0.00 34.97 2.52
1718 1739 0.110486 TCTCAAGAGTTTGGTGGGGC 59.890 55.000 0.00 0.00 34.97 5.80
1731 1752 3.119319 TGGTGGGGCTGACTTCAATATA 58.881 45.455 0.00 0.00 0.00 0.86
1966 1988 2.889045 AGCCAATTACTCGCTCCGTATA 59.111 45.455 0.00 0.00 0.00 1.47
1973 1995 8.219105 CCAATTACTCGCTCCGTATAAAAATAC 58.781 37.037 0.00 0.00 0.00 1.89
1975 1997 7.684062 TTACTCGCTCCGTATAAAAATACAC 57.316 36.000 0.00 0.00 0.00 2.90
1979 2001 4.500117 CGCTCCGTATAAAAATACACGACA 59.500 41.667 0.00 0.00 36.53 4.35
2206 2238 7.678947 ATTCTATTTAATTCTGGATGCTCGG 57.321 36.000 0.00 0.00 0.00 4.63
2218 2250 2.740981 GGATGCTCGGCTGATAAGAATG 59.259 50.000 0.00 0.00 0.00 2.67
2266 2298 4.013728 TGGTCCTTGGTTCCATTTATTCG 58.986 43.478 0.00 0.00 0.00 3.34
2280 2312 3.744238 TTATTCGCTCGATTCATGGGA 57.256 42.857 0.00 0.00 0.00 4.37
2286 2318 0.250209 CTCGATTCATGGGAGCAGGG 60.250 60.000 0.00 0.00 0.00 4.45
2420 2455 6.135290 TCTGTGAACAAAGAAAAGGTGATG 57.865 37.500 0.00 0.00 0.00 3.07
2473 2519 4.518590 TGCAGCAAATTCTTTGTGCTACTA 59.481 37.500 18.64 5.53 46.66 1.82
2474 2520 4.853743 GCAGCAAATTCTTTGTGCTACTAC 59.146 41.667 1.38 0.00 46.66 2.73
2478 2524 5.335191 GCAAATTCTTTGTGCTACTACAGCT 60.335 40.000 1.97 0.00 44.63 4.24
2496 2542 2.363683 GCTGGAATGAGCTTAGCAAGT 58.636 47.619 7.07 0.00 35.95 3.16
2497 2543 3.535561 GCTGGAATGAGCTTAGCAAGTA 58.464 45.455 7.07 0.00 35.95 2.24
2498 2544 3.311048 GCTGGAATGAGCTTAGCAAGTAC 59.689 47.826 7.07 0.00 35.95 2.73
2499 2545 4.764172 CTGGAATGAGCTTAGCAAGTACT 58.236 43.478 7.07 0.00 0.00 2.73
2500 2546 5.682471 GCTGGAATGAGCTTAGCAAGTACTA 60.682 44.000 7.07 0.00 35.95 1.82
2501 2547 5.907207 TGGAATGAGCTTAGCAAGTACTAG 58.093 41.667 7.07 0.00 0.00 2.57
2502 2548 5.656859 TGGAATGAGCTTAGCAAGTACTAGA 59.343 40.000 7.07 0.00 0.00 2.43
2503 2549 6.183360 TGGAATGAGCTTAGCAAGTACTAGAG 60.183 42.308 7.07 0.00 0.00 2.43
2561 2612 3.439857 TCCTTTATCTGCCTTTGCTGT 57.560 42.857 0.00 0.00 38.71 4.40
2568 2619 6.832520 TTATCTGCCTTTGCTGTCATTTTA 57.167 33.333 0.00 0.00 38.71 1.52
2645 2696 2.223994 GGACCTTACAATAGTCGGGCTC 60.224 54.545 0.00 0.00 29.66 4.70
2663 2714 1.135139 CTCGATGTCGTGGATGAAGGT 59.865 52.381 2.04 0.00 40.80 3.50
2684 2735 0.527113 CAGATTCGCATGGGCAACAA 59.473 50.000 4.59 0.00 41.24 2.83
2723 2774 0.613012 GCTTGAACCCCAGCTTGGAT 60.613 55.000 5.14 0.00 40.96 3.41
2795 2846 1.278413 GTAGGTGAGGGGAAGGTTGTC 59.722 57.143 0.00 0.00 0.00 3.18
3139 3196 6.535865 CCTTCTTCTCTGAGTCATCTTCATTG 59.464 42.308 4.32 0.00 0.00 2.82
3152 3209 7.770897 AGTCATCTTCATTGTATTAAGACCACC 59.229 37.037 0.00 0.00 32.38 4.61
3182 3239 1.685803 GGTGGGGCATTGTCATCATCA 60.686 52.381 0.00 0.00 0.00 3.07
3200 3257 0.607217 CACAGATGCCAGCAAGACCA 60.607 55.000 0.00 0.00 0.00 4.02
3302 3359 1.557269 AAGGCCAACGAGATCCAGCT 61.557 55.000 5.01 0.00 0.00 4.24
3471 3528 1.037493 ATCACGGGTAGCTAATGCGA 58.963 50.000 0.00 0.00 45.42 5.10
3680 3737 2.742116 GCCCCAGATAGTTGGCCGA 61.742 63.158 0.00 0.00 37.94 5.54
3695 3752 0.874390 GCCGATCACAGAGTTTTGCA 59.126 50.000 0.00 0.00 0.00 4.08
3830 3887 6.084326 TCACAGAAAAGCCAGGTTTATTTC 57.916 37.500 0.00 0.00 0.00 2.17
3836 3893 1.359130 AGCCAGGTTTATTTCAGCCCT 59.641 47.619 0.00 0.00 0.00 5.19
3839 3896 2.943033 CCAGGTTTATTTCAGCCCTACG 59.057 50.000 0.00 0.00 0.00 3.51
3905 3962 1.871080 AACCTCGTCAAAGTGCTCAG 58.129 50.000 0.00 0.00 0.00 3.35
3947 4004 3.495100 CCTGATAGGATCCCCGTTTCTTG 60.495 52.174 8.55 0.00 37.67 3.02
3975 4032 9.722184 CTCCAGATCATACAAAGATATCACATT 57.278 33.333 5.32 0.00 0.00 2.71
4026 4083 3.472652 TCCATTTTGCTGTAGTCGTGTT 58.527 40.909 0.00 0.00 0.00 3.32
4027 4084 3.496884 TCCATTTTGCTGTAGTCGTGTTC 59.503 43.478 0.00 0.00 0.00 3.18
4059 4116 1.693083 CTAGCTGTAAACCACGCGCC 61.693 60.000 5.73 0.00 33.65 6.53
4072 4129 1.019278 ACGCGCCGATGATTCTTTGT 61.019 50.000 5.73 0.00 0.00 2.83
4204 4261 2.104622 TGTTGAGTGTTGAGGATGCTGA 59.895 45.455 0.00 0.00 0.00 4.26
4415 4480 2.647683 TGTATGTTCAACCCACTGCA 57.352 45.000 0.00 0.00 0.00 4.41
4439 4504 2.385315 CATATGCAACGTCGAGTCGAT 58.615 47.619 19.75 0.00 38.42 3.59
4507 4578 9.565213 TGCATTTTTCCTTTGTTTAACAAATTG 57.435 25.926 21.33 15.83 45.79 2.32
4559 4630 4.679197 TGCGTTGAGAAATTTGTAATGCAC 59.321 37.500 15.83 0.00 38.07 4.57
4588 4659 7.582667 TTGCACTACACTAGAAGAGCATATA 57.417 36.000 13.68 2.23 0.00 0.86
4589 4660 6.971602 TGCACTACACTAGAAGAGCATATAC 58.028 40.000 0.00 0.00 0.00 1.47
4597 4668 8.709308 ACACTAGAAGAGCATATACCATTTTCT 58.291 33.333 0.00 0.00 0.00 2.52
4623 4694 7.248437 TGTACTAGACGAACACATTATCACAG 58.752 38.462 0.00 0.00 0.00 3.66
4639 4711 0.447801 ACAGCATGGCGATCGTTTTC 59.552 50.000 17.81 5.08 43.62 2.29
4665 4737 1.740585 CCGCGTGGACAAATTTGGATA 59.259 47.619 21.74 4.94 37.49 2.59
4666 4738 2.357637 CCGCGTGGACAAATTTGGATAT 59.642 45.455 21.74 0.74 37.49 1.63
4707 4779 8.762426 AGAAACAAGACTGTAAATAAACTCGTC 58.238 33.333 0.00 0.00 33.45 4.20
4792 4864 2.811799 GCAAAGTGCAACGGGGTT 59.188 55.556 0.00 0.00 45.86 4.11
4793 4865 1.591327 GCAAAGTGCAACGGGGTTG 60.591 57.895 4.19 4.19 45.86 3.77
4794 4866 1.067250 CAAAGTGCAACGGGGTTGG 59.933 57.895 10.19 0.00 45.86 3.77
4795 4867 1.380650 AAAGTGCAACGGGGTTGGT 60.381 52.632 10.19 0.00 45.86 3.67
4796 4868 0.973496 AAAGTGCAACGGGGTTGGTT 60.973 50.000 10.19 0.00 45.86 3.67
4814 4886 1.406860 TTTTGGTTCCCCTTGCTGCC 61.407 55.000 0.00 0.00 0.00 4.85
4885 4957 1.383456 GCCGGCAATTGCATAGTCCA 61.383 55.000 30.32 0.00 44.36 4.02
4920 4992 2.446036 GAGCCCACCCTATCCGGT 60.446 66.667 0.00 0.00 36.18 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.104527 CCTGTTTAGGGTTCATACCATGAGA 60.105 44.000 0.00 0.00 46.96 3.27
1 2 5.126067 CCTGTTTAGGGTTCATACCATGAG 58.874 45.833 0.00 0.00 46.96 2.90
2 3 5.110814 CCTGTTTAGGGTTCATACCATGA 57.889 43.478 0.00 0.00 46.96 3.07
27 28 3.966543 AAGGAGGTGCGGGGGTTG 61.967 66.667 0.00 0.00 0.00 3.77
28 29 3.966543 CAAGGAGGTGCGGGGGTT 61.967 66.667 0.00 0.00 0.00 4.11
29 30 4.974438 TCAAGGAGGTGCGGGGGT 62.974 66.667 0.00 0.00 0.00 4.95
30 31 3.406595 GATCAAGGAGGTGCGGGGG 62.407 68.421 0.00 0.00 0.00 5.40
31 32 2.190578 GATCAAGGAGGTGCGGGG 59.809 66.667 0.00 0.00 0.00 5.73
32 33 0.322456 TTTGATCAAGGAGGTGCGGG 60.322 55.000 8.41 0.00 0.00 6.13
33 34 1.672881 GATTTGATCAAGGAGGTGCGG 59.327 52.381 8.41 0.00 0.00 5.69
34 35 1.672881 GGATTTGATCAAGGAGGTGCG 59.327 52.381 8.41 0.00 0.00 5.34
35 36 2.948315 GAGGATTTGATCAAGGAGGTGC 59.052 50.000 8.41 0.12 0.00 5.01
36 37 3.054139 TGGAGGATTTGATCAAGGAGGTG 60.054 47.826 8.41 0.00 0.00 4.00
37 38 3.054065 GTGGAGGATTTGATCAAGGAGGT 60.054 47.826 8.41 0.00 0.00 3.85
38 39 3.549794 GTGGAGGATTTGATCAAGGAGG 58.450 50.000 8.41 0.00 0.00 4.30
39 40 3.201708 AGGTGGAGGATTTGATCAAGGAG 59.798 47.826 8.41 0.00 0.00 3.69
40 41 3.192944 AGGTGGAGGATTTGATCAAGGA 58.807 45.455 8.41 0.00 0.00 3.36
41 42 3.549794 GAGGTGGAGGATTTGATCAAGG 58.450 50.000 8.41 0.00 0.00 3.61
42 43 3.549794 GGAGGTGGAGGATTTGATCAAG 58.450 50.000 8.41 0.00 0.00 3.02
43 44 2.242196 GGGAGGTGGAGGATTTGATCAA 59.758 50.000 3.38 3.38 0.00 2.57
44 45 1.846439 GGGAGGTGGAGGATTTGATCA 59.154 52.381 0.00 0.00 0.00 2.92
45 46 1.846439 TGGGAGGTGGAGGATTTGATC 59.154 52.381 0.00 0.00 0.00 2.92
46 47 1.849039 CTGGGAGGTGGAGGATTTGAT 59.151 52.381 0.00 0.00 0.00 2.57
47 48 1.203428 TCTGGGAGGTGGAGGATTTGA 60.203 52.381 0.00 0.00 0.00 2.69
48 49 1.211457 CTCTGGGAGGTGGAGGATTTG 59.789 57.143 0.00 0.00 0.00 2.32
49 50 1.081174 TCTCTGGGAGGTGGAGGATTT 59.919 52.381 0.00 0.00 0.00 2.17
50 51 0.719015 TCTCTGGGAGGTGGAGGATT 59.281 55.000 0.00 0.00 0.00 3.01
51 52 0.264359 CTCTCTGGGAGGTGGAGGAT 59.736 60.000 0.00 0.00 38.35 3.24
52 53 1.700368 CTCTCTGGGAGGTGGAGGA 59.300 63.158 0.00 0.00 38.35 3.71
53 54 4.371699 CTCTCTGGGAGGTGGAGG 57.628 66.667 0.00 0.00 38.35 4.30
60 61 1.850345 AGACCTAGACCTCTCTGGGAG 59.150 57.143 7.09 0.00 46.13 4.30
61 62 1.988539 AGACCTAGACCTCTCTGGGA 58.011 55.000 7.09 0.00 46.13 4.37
63 64 3.662759 AGAAGACCTAGACCTCTCTGG 57.337 52.381 0.00 0.00 42.93 3.86
64 65 4.855340 AGAAGAAGACCTAGACCTCTCTG 58.145 47.826 0.00 0.00 0.00 3.35
65 66 5.253096 AGAAGAAGAAGACCTAGACCTCTCT 59.747 44.000 0.00 0.00 0.00 3.10
66 67 5.506708 AGAAGAAGAAGACCTAGACCTCTC 58.493 45.833 0.00 0.00 0.00 3.20
67 68 5.530176 AGAAGAAGAAGACCTAGACCTCT 57.470 43.478 0.00 0.00 0.00 3.69
68 69 5.126545 GGAAGAAGAAGAAGACCTAGACCTC 59.873 48.000 0.00 0.00 0.00 3.85
69 70 5.020795 GGAAGAAGAAGAAGACCTAGACCT 58.979 45.833 0.00 0.00 0.00 3.85
70 71 4.160814 GGGAAGAAGAAGAAGACCTAGACC 59.839 50.000 0.00 0.00 0.00 3.85
71 72 4.160814 GGGGAAGAAGAAGAAGACCTAGAC 59.839 50.000 0.00 0.00 0.00 2.59
72 73 4.354662 GGGGAAGAAGAAGAAGACCTAGA 58.645 47.826 0.00 0.00 0.00 2.43
73 74 3.131400 CGGGGAAGAAGAAGAAGACCTAG 59.869 52.174 0.00 0.00 0.00 3.02
74 75 3.097614 CGGGGAAGAAGAAGAAGACCTA 58.902 50.000 0.00 0.00 0.00 3.08
75 76 1.903183 CGGGGAAGAAGAAGAAGACCT 59.097 52.381 0.00 0.00 0.00 3.85
76 77 1.624312 ACGGGGAAGAAGAAGAAGACC 59.376 52.381 0.00 0.00 0.00 3.85
77 78 2.689646 CACGGGGAAGAAGAAGAAGAC 58.310 52.381 0.00 0.00 0.00 3.01
78 79 1.002087 GCACGGGGAAGAAGAAGAAGA 59.998 52.381 0.00 0.00 0.00 2.87
79 80 1.270839 TGCACGGGGAAGAAGAAGAAG 60.271 52.381 0.00 0.00 0.00 2.85
80 81 0.762418 TGCACGGGGAAGAAGAAGAA 59.238 50.000 0.00 0.00 0.00 2.52
81 82 0.762418 TTGCACGGGGAAGAAGAAGA 59.238 50.000 0.00 0.00 0.00 2.87
82 83 1.604604 TTTGCACGGGGAAGAAGAAG 58.395 50.000 0.00 0.00 0.00 2.85
83 84 2.286365 ATTTGCACGGGGAAGAAGAA 57.714 45.000 0.00 0.00 0.00 2.52
84 85 2.159382 GAATTTGCACGGGGAAGAAGA 58.841 47.619 0.00 0.00 0.00 2.87
85 86 1.885887 TGAATTTGCACGGGGAAGAAG 59.114 47.619 0.00 0.00 0.00 2.85
86 87 1.988293 TGAATTTGCACGGGGAAGAA 58.012 45.000 0.00 0.00 0.00 2.52
87 88 1.818060 CATGAATTTGCACGGGGAAGA 59.182 47.619 0.00 0.00 0.00 2.87
88 89 1.736696 GCATGAATTTGCACGGGGAAG 60.737 52.381 0.00 0.00 42.31 3.46
89 90 0.246086 GCATGAATTTGCACGGGGAA 59.754 50.000 0.00 0.00 42.31 3.97
90 91 1.603236 GGCATGAATTTGCACGGGGA 61.603 55.000 0.00 0.00 44.59 4.81
91 92 1.153588 GGCATGAATTTGCACGGGG 60.154 57.895 0.00 0.00 44.59 5.73
92 93 0.247185 AAGGCATGAATTTGCACGGG 59.753 50.000 0.00 0.00 44.59 5.28
93 94 1.067706 TCAAGGCATGAATTTGCACGG 60.068 47.619 0.00 0.00 44.59 4.94
94 95 2.350899 TCAAGGCATGAATTTGCACG 57.649 45.000 0.00 0.00 44.59 5.34
106 107 2.592102 AGAGGATGCTTTTCAAGGCA 57.408 45.000 0.00 0.00 42.80 4.75
107 108 2.948315 CCTAGAGGATGCTTTTCAAGGC 59.052 50.000 0.00 0.00 37.39 4.35
108 109 3.054065 ACCCTAGAGGATGCTTTTCAAGG 60.054 47.826 0.00 0.00 39.89 3.61
109 110 4.227864 ACCCTAGAGGATGCTTTTCAAG 57.772 45.455 0.00 0.00 39.89 3.02
110 111 4.335416 CAACCCTAGAGGATGCTTTTCAA 58.665 43.478 0.00 0.00 39.89 2.69
111 112 3.308402 CCAACCCTAGAGGATGCTTTTCA 60.308 47.826 0.00 0.00 37.09 2.69
112 113 3.054361 TCCAACCCTAGAGGATGCTTTTC 60.054 47.826 0.00 0.00 37.09 2.29
113 114 2.919602 TCCAACCCTAGAGGATGCTTTT 59.080 45.455 0.00 0.00 37.09 2.27
114 115 2.239907 GTCCAACCCTAGAGGATGCTTT 59.760 50.000 0.00 0.00 37.09 3.51
115 116 1.840635 GTCCAACCCTAGAGGATGCTT 59.159 52.381 0.00 0.00 37.09 3.91
116 117 1.501582 GTCCAACCCTAGAGGATGCT 58.498 55.000 0.00 0.00 37.09 3.79
117 118 0.470341 GGTCCAACCCTAGAGGATGC 59.530 60.000 0.00 0.00 37.09 3.91
118 119 1.765314 CTGGTCCAACCCTAGAGGATG 59.235 57.143 0.00 3.07 37.50 3.51
119 120 1.344496 CCTGGTCCAACCCTAGAGGAT 60.344 57.143 0.00 0.00 37.50 3.24
120 121 0.042731 CCTGGTCCAACCCTAGAGGA 59.957 60.000 0.00 0.00 37.50 3.71
121 122 0.983378 CCCTGGTCCAACCCTAGAGG 60.983 65.000 0.00 0.00 37.50 3.69
122 123 1.627297 GCCCTGGTCCAACCCTAGAG 61.627 65.000 0.00 0.00 37.50 2.43
123 124 1.615424 GCCCTGGTCCAACCCTAGA 60.615 63.158 0.00 0.00 37.50 2.43
124 125 2.680370 GGCCCTGGTCCAACCCTAG 61.680 68.421 0.00 0.00 37.50 3.02
125 126 2.612746 GGCCCTGGTCCAACCCTA 60.613 66.667 0.00 0.00 37.50 3.53
126 127 4.938756 TGGCCCTGGTCCAACCCT 62.939 66.667 0.00 0.00 37.50 4.34
127 128 4.678743 GTGGCCCTGGTCCAACCC 62.679 72.222 0.00 0.00 37.50 4.11
128 129 1.571773 ATAGTGGCCCTGGTCCAACC 61.572 60.000 0.00 0.00 39.22 3.77
129 130 0.394352 CATAGTGGCCCTGGTCCAAC 60.394 60.000 0.00 0.00 35.01 3.77
130 131 1.570857 CCATAGTGGCCCTGGTCCAA 61.571 60.000 0.00 0.00 35.01 3.53
131 132 2.000701 CCATAGTGGCCCTGGTCCA 61.001 63.158 0.00 0.00 0.00 4.02
132 133 2.001269 ACCATAGTGGCCCTGGTCC 61.001 63.158 0.00 0.00 42.67 4.46
133 134 3.741325 ACCATAGTGGCCCTGGTC 58.259 61.111 0.00 0.00 42.67 4.02
134 135 2.001269 GGACCATAGTGGCCCTGGT 61.001 63.158 14.25 14.25 45.80 4.00
135 136 2.757124 GGGACCATAGTGGCCCTGG 61.757 68.421 16.43 4.62 44.97 4.45
136 137 2.919043 GGGACCATAGTGGCCCTG 59.081 66.667 16.43 0.00 44.97 4.45
139 140 0.550914 TGATTGGGACCATAGTGGCC 59.449 55.000 0.00 0.00 42.67 5.36
140 141 1.680338 GTGATTGGGACCATAGTGGC 58.320 55.000 0.00 0.00 42.67 5.01
141 142 1.846439 AGGTGATTGGGACCATAGTGG 59.154 52.381 0.00 0.00 45.02 4.00
142 143 2.158755 GGAGGTGATTGGGACCATAGTG 60.159 54.545 0.00 0.00 35.76 2.74
143 144 2.127708 GGAGGTGATTGGGACCATAGT 58.872 52.381 0.00 0.00 35.76 2.12
144 145 2.126882 TGGAGGTGATTGGGACCATAG 58.873 52.381 0.00 0.00 35.76 2.23
145 146 2.278657 TGGAGGTGATTGGGACCATA 57.721 50.000 0.00 0.00 35.76 2.74
146 147 1.496429 GATGGAGGTGATTGGGACCAT 59.504 52.381 0.00 0.00 40.21 3.55
147 148 0.918983 GATGGAGGTGATTGGGACCA 59.081 55.000 0.00 0.00 35.76 4.02
148 149 0.179045 CGATGGAGGTGATTGGGACC 60.179 60.000 0.00 0.00 0.00 4.46
149 150 0.541863 ACGATGGAGGTGATTGGGAC 59.458 55.000 0.00 0.00 0.00 4.46
150 151 0.830648 GACGATGGAGGTGATTGGGA 59.169 55.000 0.00 0.00 0.00 4.37
151 152 0.833287 AGACGATGGAGGTGATTGGG 59.167 55.000 0.00 0.00 0.00 4.12
152 153 2.555199 GAAGACGATGGAGGTGATTGG 58.445 52.381 0.00 0.00 0.00 3.16
153 154 2.169352 AGGAAGACGATGGAGGTGATTG 59.831 50.000 0.00 0.00 0.00 2.67
154 155 2.432510 GAGGAAGACGATGGAGGTGATT 59.567 50.000 0.00 0.00 0.00 2.57
155 156 2.035632 GAGGAAGACGATGGAGGTGAT 58.964 52.381 0.00 0.00 0.00 3.06
156 157 1.475403 GAGGAAGACGATGGAGGTGA 58.525 55.000 0.00 0.00 0.00 4.02
157 158 0.461961 GGAGGAAGACGATGGAGGTG 59.538 60.000 0.00 0.00 0.00 4.00
158 159 0.041238 TGGAGGAAGACGATGGAGGT 59.959 55.000 0.00 0.00 0.00 3.85
159 160 1.418334 ATGGAGGAAGACGATGGAGG 58.582 55.000 0.00 0.00 0.00 4.30
160 161 3.829026 TGATATGGAGGAAGACGATGGAG 59.171 47.826 0.00 0.00 0.00 3.86
161 162 3.829026 CTGATATGGAGGAAGACGATGGA 59.171 47.826 0.00 0.00 0.00 3.41
162 163 3.616076 GCTGATATGGAGGAAGACGATGG 60.616 52.174 0.00 0.00 0.00 3.51
163 164 3.583806 GCTGATATGGAGGAAGACGATG 58.416 50.000 0.00 0.00 0.00 3.84
164 165 2.564947 GGCTGATATGGAGGAAGACGAT 59.435 50.000 0.00 0.00 0.00 3.73
165 166 1.964223 GGCTGATATGGAGGAAGACGA 59.036 52.381 0.00 0.00 0.00 4.20
166 167 1.967066 AGGCTGATATGGAGGAAGACG 59.033 52.381 0.00 0.00 0.00 4.18
167 168 2.301583 GGAGGCTGATATGGAGGAAGAC 59.698 54.545 0.00 0.00 0.00 3.01
168 169 2.180973 AGGAGGCTGATATGGAGGAAGA 59.819 50.000 0.00 0.00 0.00 2.87
169 170 2.566724 GAGGAGGCTGATATGGAGGAAG 59.433 54.545 0.00 0.00 0.00 3.46
170 171 2.614259 GAGGAGGCTGATATGGAGGAA 58.386 52.381 0.00 0.00 0.00 3.36
171 172 1.203237 GGAGGAGGCTGATATGGAGGA 60.203 57.143 0.00 0.00 0.00 3.71
172 173 1.274712 GGAGGAGGCTGATATGGAGG 58.725 60.000 0.00 0.00 0.00 4.30
173 174 0.894141 CGGAGGAGGCTGATATGGAG 59.106 60.000 0.00 0.00 0.00 3.86
174 175 0.482887 TCGGAGGAGGCTGATATGGA 59.517 55.000 0.00 0.00 0.00 3.41
175 176 1.206610 CATCGGAGGAGGCTGATATGG 59.793 57.143 0.00 0.00 32.74 2.74
176 177 1.898472 ACATCGGAGGAGGCTGATATG 59.102 52.381 0.00 0.00 32.74 1.78
177 178 2.301296 CAACATCGGAGGAGGCTGATAT 59.699 50.000 0.00 0.00 32.74 1.63
178 179 1.688735 CAACATCGGAGGAGGCTGATA 59.311 52.381 0.00 0.00 32.74 2.15
179 180 0.467384 CAACATCGGAGGAGGCTGAT 59.533 55.000 0.00 0.00 34.26 2.90
180 181 1.617018 CCAACATCGGAGGAGGCTGA 61.617 60.000 0.00 0.00 0.00 4.26
181 182 1.153289 CCAACATCGGAGGAGGCTG 60.153 63.158 0.00 0.00 0.00 4.85
182 183 3.036429 GCCAACATCGGAGGAGGCT 62.036 63.158 18.40 0.00 39.02 4.58
183 184 2.514824 GCCAACATCGGAGGAGGC 60.515 66.667 13.08 13.08 34.71 4.70
184 185 1.153289 CTGCCAACATCGGAGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
185 186 1.817099 GCTGCCAACATCGGAGGAG 60.817 63.158 0.00 0.00 0.00 3.69
186 187 2.268920 GCTGCCAACATCGGAGGA 59.731 61.111 0.00 0.00 0.00 3.71
187 188 3.197790 CGCTGCCAACATCGGAGG 61.198 66.667 0.00 0.00 31.92 4.30
188 189 3.869272 GCGCTGCCAACATCGGAG 61.869 66.667 0.00 0.00 35.98 4.63
204 205 4.847444 GGAGAAGGCTGCGGAGGC 62.847 72.222 23.28 23.28 45.31 4.70
205 206 3.080121 AGGAGAAGGCTGCGGAGG 61.080 66.667 5.93 0.00 37.57 4.30
206 207 2.498726 GAGGAGAAGGCTGCGGAG 59.501 66.667 0.00 0.00 37.57 4.63
207 208 3.452786 CGAGGAGAAGGCTGCGGA 61.453 66.667 0.00 0.00 37.57 5.54
208 209 4.521062 CCGAGGAGAAGGCTGCGG 62.521 72.222 0.00 0.00 37.57 5.69
209 210 4.521062 CCCGAGGAGAAGGCTGCG 62.521 72.222 0.00 0.00 37.57 5.18
210 211 4.847444 GCCCGAGGAGAAGGCTGC 62.847 72.222 0.00 0.00 43.62 5.25
211 212 4.521062 CGCCCGAGGAGAAGGCTG 62.521 72.222 0.00 0.00 44.84 4.85
221 222 2.044806 AATCCAATCCTCCGCCCGAG 62.045 60.000 0.00 0.00 38.46 4.63
222 223 2.070039 AATCCAATCCTCCGCCCGA 61.070 57.895 0.00 0.00 0.00 5.14
223 224 1.893808 CAATCCAATCCTCCGCCCG 60.894 63.158 0.00 0.00 0.00 6.13
224 225 0.819666 GACAATCCAATCCTCCGCCC 60.820 60.000 0.00 0.00 0.00 6.13
225 226 0.181350 AGACAATCCAATCCTCCGCC 59.819 55.000 0.00 0.00 0.00 6.13
226 227 1.303309 CAGACAATCCAATCCTCCGC 58.697 55.000 0.00 0.00 0.00 5.54
227 228 1.134280 AGCAGACAATCCAATCCTCCG 60.134 52.381 0.00 0.00 0.00 4.63
228 229 2.570135 GAGCAGACAATCCAATCCTCC 58.430 52.381 0.00 0.00 0.00 4.30
229 230 2.570135 GGAGCAGACAATCCAATCCTC 58.430 52.381 0.00 0.00 35.54 3.71
230 231 1.213926 GGGAGCAGACAATCCAATCCT 59.786 52.381 0.00 0.00 37.33 3.24
231 232 1.685148 GGGAGCAGACAATCCAATCC 58.315 55.000 0.00 0.00 37.33 3.01
232 233 1.685148 GGGGAGCAGACAATCCAATC 58.315 55.000 0.00 0.00 37.33 2.67
233 234 0.107017 CGGGGAGCAGACAATCCAAT 60.107 55.000 0.00 0.00 37.33 3.16
234 235 1.198094 TCGGGGAGCAGACAATCCAA 61.198 55.000 0.00 0.00 37.33 3.53
235 236 0.982852 ATCGGGGAGCAGACAATCCA 60.983 55.000 0.00 0.00 37.33 3.41
236 237 0.250081 GATCGGGGAGCAGACAATCC 60.250 60.000 0.00 0.00 34.64 3.01
237 238 0.755686 AGATCGGGGAGCAGACAATC 59.244 55.000 0.00 0.00 0.00 2.67
238 239 0.755686 GAGATCGGGGAGCAGACAAT 59.244 55.000 0.00 0.00 0.00 2.71
239 240 1.667154 CGAGATCGGGGAGCAGACAA 61.667 60.000 0.00 0.00 35.37 3.18
240 241 2.121538 CGAGATCGGGGAGCAGACA 61.122 63.158 0.00 0.00 35.37 3.41
241 242 1.668101 AACGAGATCGGGGAGCAGAC 61.668 60.000 7.22 0.00 44.95 3.51
242 243 0.970937 AAACGAGATCGGGGAGCAGA 60.971 55.000 7.22 0.00 44.95 4.26
243 244 0.528684 GAAACGAGATCGGGGAGCAG 60.529 60.000 7.22 0.00 44.95 4.24
244 245 1.515954 GAAACGAGATCGGGGAGCA 59.484 57.895 7.22 0.00 44.95 4.26
245 246 1.227292 GGAAACGAGATCGGGGAGC 60.227 63.158 7.22 0.00 44.95 4.70
246 247 0.386113 GAGGAAACGAGATCGGGGAG 59.614 60.000 7.22 0.00 44.95 4.30
247 248 1.041447 GGAGGAAACGAGATCGGGGA 61.041 60.000 7.22 0.00 44.95 4.81
248 249 1.043673 AGGAGGAAACGAGATCGGGG 61.044 60.000 7.22 0.00 44.95 5.73
249 250 0.103208 CAGGAGGAAACGAGATCGGG 59.897 60.000 7.22 0.00 44.95 5.14
250 251 0.528684 GCAGGAGGAAACGAGATCGG 60.529 60.000 7.22 0.00 44.95 4.18
251 252 0.867753 CGCAGGAGGAAACGAGATCG 60.868 60.000 0.00 0.00 46.33 3.69
252 253 1.148759 GCGCAGGAGGAAACGAGATC 61.149 60.000 0.30 0.00 0.00 2.75
253 254 1.153549 GCGCAGGAGGAAACGAGAT 60.154 57.895 0.30 0.00 0.00 2.75
254 255 2.261671 GCGCAGGAGGAAACGAGA 59.738 61.111 0.30 0.00 0.00 4.04
255 256 2.815647 GGCGCAGGAGGAAACGAG 60.816 66.667 10.83 0.00 0.00 4.18
256 257 3.296709 GAGGCGCAGGAGGAAACGA 62.297 63.158 10.83 0.00 0.00 3.85
257 258 2.815647 GAGGCGCAGGAGGAAACG 60.816 66.667 10.83 0.00 0.00 3.60
258 259 2.436824 GGAGGCGCAGGAGGAAAC 60.437 66.667 10.83 0.00 0.00 2.78
259 260 3.717294 GGGAGGCGCAGGAGGAAA 61.717 66.667 10.83 0.00 0.00 3.13
278 279 0.833834 AGGAGATGCATACGAGGGGG 60.834 60.000 0.00 0.00 0.00 5.40
279 280 1.001406 GAAGGAGATGCATACGAGGGG 59.999 57.143 0.00 0.00 0.00 4.79
280 281 1.336332 CGAAGGAGATGCATACGAGGG 60.336 57.143 0.00 0.00 0.00 4.30
281 282 1.338337 ACGAAGGAGATGCATACGAGG 59.662 52.381 0.00 0.00 0.00 4.63
282 283 2.605823 GGACGAAGGAGATGCATACGAG 60.606 54.545 0.00 0.00 0.00 4.18
283 284 1.337071 GGACGAAGGAGATGCATACGA 59.663 52.381 0.00 0.00 0.00 3.43
284 285 1.603172 GGGACGAAGGAGATGCATACG 60.603 57.143 0.00 1.95 0.00 3.06
285 286 1.689273 AGGGACGAAGGAGATGCATAC 59.311 52.381 0.00 0.00 0.00 2.39
286 287 2.088104 AGGGACGAAGGAGATGCATA 57.912 50.000 0.00 0.00 0.00 3.14
287 288 1.139853 GAAGGGACGAAGGAGATGCAT 59.860 52.381 0.00 0.00 0.00 3.96
288 289 0.537188 GAAGGGACGAAGGAGATGCA 59.463 55.000 0.00 0.00 0.00 3.96
289 290 0.179070 GGAAGGGACGAAGGAGATGC 60.179 60.000 0.00 0.00 0.00 3.91
290 291 1.490574 AGGAAGGGACGAAGGAGATG 58.509 55.000 0.00 0.00 0.00 2.90
291 292 2.112190 GAAGGAAGGGACGAAGGAGAT 58.888 52.381 0.00 0.00 0.00 2.75
292 293 1.203137 TGAAGGAAGGGACGAAGGAGA 60.203 52.381 0.00 0.00 0.00 3.71
293 294 1.267121 TGAAGGAAGGGACGAAGGAG 58.733 55.000 0.00 0.00 0.00 3.69
294 295 1.623811 CTTGAAGGAAGGGACGAAGGA 59.376 52.381 0.00 0.00 0.00 3.36
295 296 1.946283 GCTTGAAGGAAGGGACGAAGG 60.946 57.143 0.00 0.00 31.56 3.46
296 297 1.002544 AGCTTGAAGGAAGGGACGAAG 59.997 52.381 0.00 0.00 31.56 3.79
297 298 1.002087 GAGCTTGAAGGAAGGGACGAA 59.998 52.381 0.00 0.00 31.56 3.85
298 299 0.608640 GAGCTTGAAGGAAGGGACGA 59.391 55.000 0.00 0.00 31.56 4.20
299 300 0.737715 CGAGCTTGAAGGAAGGGACG 60.738 60.000 0.00 0.00 31.56 4.79
300 301 0.321996 ACGAGCTTGAAGGAAGGGAC 59.678 55.000 8.31 0.00 31.56 4.46
301 302 1.056660 AACGAGCTTGAAGGAAGGGA 58.943 50.000 8.31 0.00 31.56 4.20
302 303 1.807142 GAAACGAGCTTGAAGGAAGGG 59.193 52.381 8.31 0.00 31.56 3.95
303 304 2.494059 TGAAACGAGCTTGAAGGAAGG 58.506 47.619 8.31 0.00 31.56 3.46
304 305 4.756084 ATTGAAACGAGCTTGAAGGAAG 57.244 40.909 8.31 0.00 34.41 3.46
305 306 5.305585 AGTATTGAAACGAGCTTGAAGGAA 58.694 37.500 8.31 0.00 0.00 3.36
306 307 4.894784 AGTATTGAAACGAGCTTGAAGGA 58.105 39.130 8.31 0.00 0.00 3.36
307 308 4.201628 CGAGTATTGAAACGAGCTTGAAGG 60.202 45.833 8.31 0.00 0.00 3.46
308 309 4.621460 TCGAGTATTGAAACGAGCTTGAAG 59.379 41.667 8.31 0.00 0.00 3.02
309 310 4.552355 TCGAGTATTGAAACGAGCTTGAA 58.448 39.130 8.31 0.00 0.00 2.69
310 311 4.168922 TCGAGTATTGAAACGAGCTTGA 57.831 40.909 8.31 0.00 0.00 3.02
311 312 4.434330 GGTTCGAGTATTGAAACGAGCTTG 60.434 45.833 0.00 0.00 40.90 4.01
312 313 3.678548 GGTTCGAGTATTGAAACGAGCTT 59.321 43.478 0.00 0.00 40.90 3.74
313 314 3.251571 GGTTCGAGTATTGAAACGAGCT 58.748 45.455 0.00 0.00 40.90 4.09
314 315 3.636404 GGTTCGAGTATTGAAACGAGC 57.364 47.619 0.00 0.00 40.90 5.03
334 335 1.699054 TTGCATGGGGGATCCGAGAG 61.699 60.000 5.45 0.00 38.76 3.20
335 336 1.061905 ATTGCATGGGGGATCCGAGA 61.062 55.000 5.45 0.00 38.76 4.04
336 337 0.607489 GATTGCATGGGGGATCCGAG 60.607 60.000 5.45 0.00 38.76 4.63
337 338 1.351850 TGATTGCATGGGGGATCCGA 61.352 55.000 5.45 0.00 38.76 4.55
338 339 1.151221 TGATTGCATGGGGGATCCG 59.849 57.895 5.45 0.00 38.76 4.18
339 340 0.829182 GGTGATTGCATGGGGGATCC 60.829 60.000 1.92 1.92 0.00 3.36
340 341 1.174712 CGGTGATTGCATGGGGGATC 61.175 60.000 0.00 0.00 0.00 3.36
341 342 1.152694 CGGTGATTGCATGGGGGAT 60.153 57.895 0.00 0.00 0.00 3.85
342 343 1.275421 TACGGTGATTGCATGGGGGA 61.275 55.000 0.00 0.00 0.00 4.81
343 344 1.101049 GTACGGTGATTGCATGGGGG 61.101 60.000 0.00 0.00 0.00 5.40
344 345 1.101049 GGTACGGTGATTGCATGGGG 61.101 60.000 0.00 0.00 0.00 4.96
345 346 0.393673 TGGTACGGTGATTGCATGGG 60.394 55.000 0.00 0.00 0.00 4.00
346 347 1.401552 CTTGGTACGGTGATTGCATGG 59.598 52.381 0.00 0.00 0.00 3.66
347 348 1.401552 CCTTGGTACGGTGATTGCATG 59.598 52.381 0.00 0.00 0.00 4.06
348 349 1.280710 TCCTTGGTACGGTGATTGCAT 59.719 47.619 0.00 0.00 0.00 3.96
349 350 0.687920 TCCTTGGTACGGTGATTGCA 59.312 50.000 0.00 0.00 0.00 4.08
350 351 1.084289 GTCCTTGGTACGGTGATTGC 58.916 55.000 0.00 0.00 0.00 3.56
351 352 2.465860 TGTCCTTGGTACGGTGATTG 57.534 50.000 0.00 0.00 0.00 2.67
352 353 2.569853 TCATGTCCTTGGTACGGTGATT 59.430 45.455 0.00 0.00 0.00 2.57
353 354 2.168521 CTCATGTCCTTGGTACGGTGAT 59.831 50.000 0.00 0.00 0.00 3.06
354 355 1.548719 CTCATGTCCTTGGTACGGTGA 59.451 52.381 0.00 0.00 0.00 4.02
355 356 1.405526 CCTCATGTCCTTGGTACGGTG 60.406 57.143 0.00 0.00 0.00 4.94
356 357 0.902531 CCTCATGTCCTTGGTACGGT 59.097 55.000 0.00 0.00 0.00 4.83
357 358 0.902531 ACCTCATGTCCTTGGTACGG 59.097 55.000 0.00 0.00 0.00 4.02
358 359 2.289444 ACAACCTCATGTCCTTGGTACG 60.289 50.000 0.00 0.00 31.82 3.67
359 360 3.418684 ACAACCTCATGTCCTTGGTAC 57.581 47.619 0.00 0.00 31.82 3.34
360 361 4.164981 ACTACAACCTCATGTCCTTGGTA 58.835 43.478 0.00 0.00 34.75 3.25
361 362 2.979678 ACTACAACCTCATGTCCTTGGT 59.020 45.455 0.00 0.00 34.75 3.67
362 363 3.261897 AGACTACAACCTCATGTCCTTGG 59.738 47.826 0.00 0.00 34.75 3.61
363 364 4.543590 AGACTACAACCTCATGTCCTTG 57.456 45.455 0.00 0.00 34.75 3.61
364 365 5.334421 AGTAGACTACAACCTCATGTCCTT 58.666 41.667 14.95 0.00 34.75 3.36
365 366 4.936802 AGTAGACTACAACCTCATGTCCT 58.063 43.478 14.95 0.00 34.75 3.85
366 367 5.662674 AAGTAGACTACAACCTCATGTCC 57.337 43.478 14.95 0.00 34.75 4.02
367 368 6.267070 GCTAAGTAGACTACAACCTCATGTC 58.733 44.000 14.95 0.00 34.75 3.06
368 369 5.163642 CGCTAAGTAGACTACAACCTCATGT 60.164 44.000 14.95 0.00 37.32 3.21
369 370 5.274718 CGCTAAGTAGACTACAACCTCATG 58.725 45.833 14.95 0.00 0.00 3.07
370 371 4.202030 GCGCTAAGTAGACTACAACCTCAT 60.202 45.833 14.95 0.00 0.00 2.90
371 372 3.128242 GCGCTAAGTAGACTACAACCTCA 59.872 47.826 14.95 0.00 0.00 3.86
372 373 3.377798 AGCGCTAAGTAGACTACAACCTC 59.622 47.826 8.99 0.09 0.00 3.85
373 374 3.354467 AGCGCTAAGTAGACTACAACCT 58.646 45.455 8.99 0.00 0.00 3.50
374 375 3.693654 GAGCGCTAAGTAGACTACAACC 58.306 50.000 11.50 0.00 0.00 3.77
375 376 3.352652 CGAGCGCTAAGTAGACTACAAC 58.647 50.000 11.50 0.00 0.00 3.32
376 377 2.223203 GCGAGCGCTAAGTAGACTACAA 60.223 50.000 11.50 1.88 38.26 2.41
377 378 1.329906 GCGAGCGCTAAGTAGACTACA 59.670 52.381 11.50 0.00 38.26 2.74
378 379 1.329906 TGCGAGCGCTAAGTAGACTAC 59.670 52.381 11.50 4.32 42.51 2.73
379 380 1.598132 CTGCGAGCGCTAAGTAGACTA 59.402 52.381 20.41 0.00 42.51 2.59
380 381 0.378962 CTGCGAGCGCTAAGTAGACT 59.621 55.000 20.41 0.00 42.51 3.24
381 382 0.592754 CCTGCGAGCGCTAAGTAGAC 60.593 60.000 24.62 6.06 42.51 2.59
382 383 0.746923 TCCTGCGAGCGCTAAGTAGA 60.747 55.000 24.62 12.14 42.51 2.59
383 384 0.100682 TTCCTGCGAGCGCTAAGTAG 59.899 55.000 11.50 16.44 42.51 2.57
384 385 0.744874 ATTCCTGCGAGCGCTAAGTA 59.255 50.000 11.50 6.42 42.51 2.24
385 386 0.528684 GATTCCTGCGAGCGCTAAGT 60.529 55.000 11.50 0.00 42.51 2.24
386 387 1.218230 GGATTCCTGCGAGCGCTAAG 61.218 60.000 11.50 9.28 42.51 2.18
387 388 1.227263 GGATTCCTGCGAGCGCTAA 60.227 57.895 11.50 0.00 42.51 3.09
388 389 1.955495 TTGGATTCCTGCGAGCGCTA 61.955 55.000 11.50 0.00 42.51 4.26
389 390 3.315142 TTGGATTCCTGCGAGCGCT 62.315 57.895 11.27 11.27 42.51 5.92
390 391 2.819595 TTGGATTCCTGCGAGCGC 60.820 61.111 8.08 8.08 42.35 5.92
391 392 2.802667 CGTTGGATTCCTGCGAGCG 61.803 63.158 12.05 0.00 0.00 5.03
392 393 1.424493 CTCGTTGGATTCCTGCGAGC 61.424 60.000 24.90 1.79 39.67 5.03
393 394 0.108615 ACTCGTTGGATTCCTGCGAG 60.109 55.000 29.81 29.81 45.63 5.03
394 395 0.108804 GACTCGTTGGATTCCTGCGA 60.109 55.000 16.84 16.84 0.00 5.10
395 396 1.413767 CGACTCGTTGGATTCCTGCG 61.414 60.000 3.95 8.48 0.00 5.18
396 397 0.108804 TCGACTCGTTGGATTCCTGC 60.109 55.000 3.95 0.00 0.00 4.85
397 398 2.196749 CATCGACTCGTTGGATTCCTG 58.803 52.381 3.95 0.00 0.00 3.86
398 399 1.137086 CCATCGACTCGTTGGATTCCT 59.863 52.381 19.79 0.00 46.01 3.36
399 400 1.134788 ACCATCGACTCGTTGGATTCC 60.135 52.381 27.80 0.00 46.01 3.01
400 401 1.927174 CACCATCGACTCGTTGGATTC 59.073 52.381 27.80 0.00 46.01 2.52
401 402 1.548719 TCACCATCGACTCGTTGGATT 59.451 47.619 27.80 9.85 46.01 3.01
402 403 1.182667 TCACCATCGACTCGTTGGAT 58.817 50.000 27.80 13.80 46.01 3.41
403 404 0.963225 TTCACCATCGACTCGTTGGA 59.037 50.000 27.80 9.85 46.01 3.53
405 406 5.063438 ACATATTTTCACCATCGACTCGTTG 59.937 40.000 0.00 0.34 0.00 4.10
406 407 5.063438 CACATATTTTCACCATCGACTCGTT 59.937 40.000 0.00 0.00 0.00 3.85
407 408 4.566759 CACATATTTTCACCATCGACTCGT 59.433 41.667 0.00 0.00 0.00 4.18
408 409 4.025730 CCACATATTTTCACCATCGACTCG 60.026 45.833 0.00 0.00 0.00 4.18
409 410 5.006746 GTCCACATATTTTCACCATCGACTC 59.993 44.000 0.00 0.00 0.00 3.36
410 411 4.876107 GTCCACATATTTTCACCATCGACT 59.124 41.667 0.00 0.00 0.00 4.18
411 412 4.876107 AGTCCACATATTTTCACCATCGAC 59.124 41.667 0.00 0.00 0.00 4.20
412 413 5.097742 AGTCCACATATTTTCACCATCGA 57.902 39.130 0.00 0.00 0.00 3.59
413 414 4.273480 GGAGTCCACATATTTTCACCATCG 59.727 45.833 3.60 0.00 0.00 3.84
414 415 4.273480 CGGAGTCCACATATTTTCACCATC 59.727 45.833 10.49 0.00 0.00 3.51
415 416 4.199310 CGGAGTCCACATATTTTCACCAT 58.801 43.478 10.49 0.00 0.00 3.55
416 417 3.008594 ACGGAGTCCACATATTTTCACCA 59.991 43.478 10.49 0.00 29.74 4.17
417 418 3.606687 ACGGAGTCCACATATTTTCACC 58.393 45.455 10.49 0.00 29.74 4.02
434 435 1.770658 TCTACCTTATCCTCCGACGGA 59.229 52.381 17.28 17.28 37.50 4.69
435 436 1.878734 GTCTACCTTATCCTCCGACGG 59.121 57.143 7.84 7.84 0.00 4.79
436 437 1.878734 GGTCTACCTTATCCTCCGACG 59.121 57.143 0.00 0.00 0.00 5.12
437 438 2.237643 GGGTCTACCTTATCCTCCGAC 58.762 57.143 0.00 0.00 35.85 4.79
438 439 2.671896 GGGTCTACCTTATCCTCCGA 57.328 55.000 0.00 0.00 35.85 4.55
444 445 6.459378 GGGTTTCCCTAGGGTCTACCTTATC 61.459 52.000 30.40 19.05 44.11 1.75
445 446 4.638188 GGGTTTCCCTAGGGTCTACCTTAT 60.638 50.000 30.40 0.00 44.11 1.73
446 447 3.310879 GGGTTTCCCTAGGGTCTACCTTA 60.311 52.174 30.40 11.66 44.11 2.69
447 448 2.563828 GGGTTTCCCTAGGGTCTACCTT 60.564 54.545 30.40 0.00 44.11 3.50
448 449 1.009306 GGGTTTCCCTAGGGTCTACCT 59.991 57.143 30.40 0.00 43.53 3.08
449 450 1.504912 GGGTTTCCCTAGGGTCTACC 58.495 60.000 27.58 27.26 41.34 3.18
460 461 1.714787 AGTTTTCCCCTAGGGTTTCCC 59.285 52.381 26.66 11.09 44.74 3.97
461 462 3.537795 AAGTTTTCCCCTAGGGTTTCC 57.462 47.619 26.66 10.02 44.74 3.13
462 463 4.456911 CGTAAAGTTTTCCCCTAGGGTTTC 59.543 45.833 26.66 11.58 44.74 2.78
463 464 4.141181 ACGTAAAGTTTTCCCCTAGGGTTT 60.141 41.667 26.66 19.68 44.74 3.27
464 465 3.395607 ACGTAAAGTTTTCCCCTAGGGTT 59.604 43.478 26.66 14.26 44.74 4.11
465 466 2.981784 ACGTAAAGTTTTCCCCTAGGGT 59.018 45.455 26.66 7.80 44.74 4.34
466 467 3.008266 TGACGTAAAGTTTTCCCCTAGGG 59.992 47.826 22.25 22.25 46.11 3.53
467 468 4.251268 CTGACGTAAAGTTTTCCCCTAGG 58.749 47.826 0.06 0.06 0.00 3.02
468 469 4.689345 CACTGACGTAAAGTTTTCCCCTAG 59.311 45.833 0.71 0.00 0.00 3.02
469 470 4.634199 CACTGACGTAAAGTTTTCCCCTA 58.366 43.478 0.71 0.00 0.00 3.53
470 471 3.473625 CACTGACGTAAAGTTTTCCCCT 58.526 45.455 0.71 0.00 0.00 4.79
471 472 2.031420 GCACTGACGTAAAGTTTTCCCC 60.031 50.000 0.71 0.00 0.00 4.81
472 473 2.031420 GGCACTGACGTAAAGTTTTCCC 60.031 50.000 0.71 0.00 0.00 3.97
473 474 2.876550 AGGCACTGACGTAAAGTTTTCC 59.123 45.455 0.71 3.85 37.18 3.13
474 475 4.377124 GCTAGGCACTGACGTAAAGTTTTC 60.377 45.833 0.71 0.00 41.52 2.29
475 476 3.497262 GCTAGGCACTGACGTAAAGTTTT 59.503 43.478 0.71 0.00 41.52 2.43
476 477 3.064931 GCTAGGCACTGACGTAAAGTTT 58.935 45.455 0.71 0.00 41.52 2.66
477 478 2.612221 GGCTAGGCACTGACGTAAAGTT 60.612 50.000 12.16 0.00 41.52 2.66
478 479 1.067071 GGCTAGGCACTGACGTAAAGT 60.067 52.381 12.16 0.00 41.52 2.66
479 480 1.204941 AGGCTAGGCACTGACGTAAAG 59.795 52.381 19.70 0.00 41.52 1.85
480 481 1.067142 CAGGCTAGGCACTGACGTAAA 60.067 52.381 19.70 0.00 41.52 2.01
481 482 0.530744 CAGGCTAGGCACTGACGTAA 59.469 55.000 19.70 0.00 41.52 3.18
482 483 0.611062 ACAGGCTAGGCACTGACGTA 60.611 55.000 19.70 0.00 41.52 3.57
483 484 1.472662 AACAGGCTAGGCACTGACGT 61.473 55.000 19.70 0.00 41.52 4.34
484 485 0.320771 AAACAGGCTAGGCACTGACG 60.321 55.000 19.70 2.00 41.52 4.35
485 486 2.762535 TAAACAGGCTAGGCACTGAC 57.237 50.000 19.70 0.00 41.52 3.51
486 487 2.571653 ACATAAACAGGCTAGGCACTGA 59.428 45.455 19.70 0.00 41.52 3.41
487 488 2.939103 GACATAAACAGGCTAGGCACTG 59.061 50.000 19.70 11.42 41.52 3.66
488 489 2.571653 TGACATAAACAGGCTAGGCACT 59.428 45.455 19.70 0.00 46.37 4.40
489 490 2.985896 TGACATAAACAGGCTAGGCAC 58.014 47.619 19.70 0.00 0.00 5.01
490 491 3.433598 GGATGACATAAACAGGCTAGGCA 60.434 47.826 19.70 0.00 0.00 4.75
491 492 3.142174 GGATGACATAAACAGGCTAGGC 58.858 50.000 8.55 8.55 0.00 3.93
492 493 4.101585 TCAGGATGACATAAACAGGCTAGG 59.898 45.833 0.00 0.00 42.56 3.02
493 494 5.282055 TCAGGATGACATAAACAGGCTAG 57.718 43.478 0.00 0.00 42.56 3.42
541 544 1.672854 CGTCCATTCCTACAGGCCGA 61.673 60.000 0.00 0.00 34.44 5.54
547 550 1.822990 GTGTCTCCGTCCATTCCTACA 59.177 52.381 0.00 0.00 0.00 2.74
551 554 1.153628 CCGTGTCTCCGTCCATTCC 60.154 63.158 0.00 0.00 0.00 3.01
560 563 3.771160 ACGATGGGCCGTGTCTCC 61.771 66.667 1.02 0.00 41.70 3.71
574 577 1.298157 CGAAAAGCTGGGCATCACGA 61.298 55.000 0.00 0.00 0.00 4.35
575 578 1.135315 CGAAAAGCTGGGCATCACG 59.865 57.895 0.00 0.00 0.00 4.35
654 658 4.503714 TGTTTCCAAGTATCATCCTCCC 57.496 45.455 0.00 0.00 0.00 4.30
700 706 8.555166 TGTATTTCTGAAAAATTTGTCACGTC 57.445 30.769 6.98 0.00 0.00 4.34
762 772 3.340034 TGCGGGTAGTTACAATTCCTTG 58.660 45.455 0.00 0.00 38.39 3.61
774 785 4.212636 GCGATATTTTATGTTGCGGGTAGT 59.787 41.667 0.00 0.00 0.00 2.73
892 903 4.173924 GGCTGGCTGGCTCCTCTC 62.174 72.222 10.74 0.00 38.32 3.20
1056 1067 1.901085 GGACTTGATCCGCTCCAGT 59.099 57.895 0.00 0.00 37.88 4.00
1149 1160 0.631753 CTCCTCCTCCTCCACTACCA 59.368 60.000 0.00 0.00 0.00 3.25
1150 1161 0.105913 CCTCCTCCTCCTCCACTACC 60.106 65.000 0.00 0.00 0.00 3.18
1151 1162 0.927767 TCCTCCTCCTCCTCCACTAC 59.072 60.000 0.00 0.00 0.00 2.73
1152 1163 1.227249 CTCCTCCTCCTCCTCCACTA 58.773 60.000 0.00 0.00 0.00 2.74
1153 1164 1.589399 CCTCCTCCTCCTCCTCCACT 61.589 65.000 0.00 0.00 0.00 4.00
1154 1165 1.075600 CCTCCTCCTCCTCCTCCAC 60.076 68.421 0.00 0.00 0.00 4.02
1155 1166 1.230650 TCCTCCTCCTCCTCCTCCA 60.231 63.158 0.00 0.00 0.00 3.86
1176 1187 4.653888 AACCCTCCCCCGCGTTTG 62.654 66.667 4.92 0.00 0.00 2.93
1339 1353 2.287909 CGAAAACCAAGCGGGAAAATGA 60.288 45.455 4.35 0.00 41.15 2.57
1348 1362 1.371635 CCCAAGCGAAAACCAAGCG 60.372 57.895 0.00 0.00 35.78 4.68
1472 1487 1.526464 GAAATTGCCAAAGGTGTTGCG 59.474 47.619 0.00 0.00 0.00 4.85
1580 1595 3.239330 TGAGAATCGTTACGGAAACCGC 61.239 50.000 4.53 0.00 45.97 5.68
1592 1607 2.161012 CAGCATTGCAACTGAGAATCGT 59.839 45.455 11.91 0.00 38.61 3.73
1643 1658 0.953727 CAATATGGCATGGACCCACG 59.046 55.000 10.98 0.00 34.68 4.94
1718 1739 8.970859 AATTCCCTGAACTATATTGAAGTCAG 57.029 34.615 8.87 8.87 0.00 3.51
1731 1752 6.012745 ACAAGCTCAAATAATTCCCTGAACT 58.987 36.000 0.00 0.00 0.00 3.01
1809 1830 1.204062 CTTGCACGTACGGTTGCTG 59.796 57.895 25.27 16.66 0.00 4.41
1926 1948 9.507329 AATTGGCTACTCCATAATGTATTACAG 57.493 33.333 2.53 0.00 46.04 2.74
1930 1952 9.726438 GAGTAATTGGCTACTCCATAATGTATT 57.274 33.333 1.92 0.00 46.04 1.89
1957 1979 5.517770 AGTGTCGTGTATTTTTATACGGAGC 59.482 40.000 0.00 0.00 35.68 4.70
1966 1988 7.309920 AGTGTCAAAAAGTGTCGTGTATTTTT 58.690 30.769 0.00 0.00 35.75 1.94
1973 1995 5.651172 TGATAGTGTCAAAAAGTGTCGTG 57.349 39.130 0.00 0.00 32.78 4.35
1975 1997 5.179368 ACCATGATAGTGTCAAAAAGTGTCG 59.821 40.000 0.00 0.00 40.97 4.35
2026 2051 4.748277 TTCTTATTTGGTACTCCCTCGG 57.252 45.455 0.00 0.00 0.00 4.63
2027 2052 5.671493 ACATTCTTATTTGGTACTCCCTCG 58.329 41.667 0.00 0.00 0.00 4.63
2195 2227 1.342496 TCTTATCAGCCGAGCATCCAG 59.658 52.381 0.00 0.00 0.00 3.86
2206 2238 4.723309 ACCTCCCATTCATTCTTATCAGC 58.277 43.478 0.00 0.00 0.00 4.26
2218 2250 5.489792 TCAGCAGATATTACCTCCCATTC 57.510 43.478 0.00 0.00 0.00 2.67
2280 2312 4.692228 CATTAAAAACAACACACCCTGCT 58.308 39.130 0.00 0.00 0.00 4.24
2351 2384 6.640518 ACGTTGTTGGACTGTCAGATAATAT 58.359 36.000 6.91 0.00 0.00 1.28
2352 2385 6.032956 ACGTTGTTGGACTGTCAGATAATA 57.967 37.500 6.91 0.00 0.00 0.98
2360 2393 4.093850 AGTTACAAACGTTGTTGGACTGTC 59.906 41.667 0.00 0.00 42.22 3.51
2389 2424 9.748708 CCTTTTCTTTGTTCACAGAATTCATAA 57.251 29.630 8.44 0.00 0.00 1.90
2420 2455 1.593006 CACACGAACCACTTCACTGAC 59.407 52.381 0.00 0.00 0.00 3.51
2478 2524 4.826274 AGTACTTGCTAAGCTCATTCCA 57.174 40.909 0.00 0.00 0.00 3.53
2497 2543 9.411189 CCTCCAAAGTAAATAGAGTACTCTAGT 57.589 37.037 30.78 27.40 44.47 2.57
2498 2544 9.629878 TCCTCCAAAGTAAATAGAGTACTCTAG 57.370 37.037 30.78 17.69 44.47 2.43
2499 2545 9.629878 CTCCTCCAAAGTAAATAGAGTACTCTA 57.370 37.037 29.96 29.96 45.24 2.43
2500 2546 7.068962 GCTCCTCCAAAGTAAATAGAGTACTCT 59.931 40.741 27.72 27.72 43.40 3.24
2501 2547 7.147880 TGCTCCTCCAAAGTAAATAGAGTACTC 60.148 40.741 15.41 15.41 31.32 2.59
2502 2548 6.668283 TGCTCCTCCAAAGTAAATAGAGTACT 59.332 38.462 0.00 0.00 33.12 2.73
2503 2549 6.875076 TGCTCCTCCAAAGTAAATAGAGTAC 58.125 40.000 0.00 0.00 0.00 2.73
2561 2612 8.458573 ACAACATGTAGAACTGGTTAAAATGA 57.541 30.769 0.00 0.00 0.00 2.57
2568 2619 6.601613 TGAAGAAACAACATGTAGAACTGGTT 59.398 34.615 0.00 0.00 0.00 3.67
2645 2696 1.927174 GAACCTTCATCCACGACATCG 59.073 52.381 0.00 0.00 46.33 3.84
2663 2714 0.810648 GTTGCCCATGCGAATCTGAA 59.189 50.000 0.00 0.00 41.78 3.02
2684 2735 2.893489 GCAGGTTTTCAGGAAATGAGGT 59.107 45.455 0.00 0.00 39.68 3.85
2723 2774 2.878406 GAGCAAAACTGTACTGCCAAGA 59.122 45.455 9.63 0.00 36.73 3.02
2795 2846 8.268850 ACTTTATAAGGTTGTCAGTTGCTATG 57.731 34.615 0.00 0.00 0.00 2.23
3045 3096 3.772060 CTTGCTAACATCTTCCAAGCC 57.228 47.619 0.00 0.00 32.14 4.35
3139 3196 2.357009 TCTCGCTCGGTGGTCTTAATAC 59.643 50.000 0.00 0.00 0.00 1.89
3182 3239 0.111061 TTGGTCTTGCTGGCATCTGT 59.889 50.000 0.00 0.00 0.00 3.41
3200 3257 2.672996 GACCCATGCTGCCGTGTT 60.673 61.111 0.00 0.00 0.00 3.32
3302 3359 1.951209 TAGGTCTGGGCATCTGTGAA 58.049 50.000 0.00 0.00 0.00 3.18
3471 3528 2.547211 GCATAGCATCGCAGTTGATTCT 59.453 45.455 0.00 0.00 0.00 2.40
3680 3737 4.942761 ATGGTTTGCAAAACTCTGTGAT 57.057 36.364 26.56 9.04 0.00 3.06
3695 3752 4.162131 GGTGAATCCCATTTGCTATGGTTT 59.838 41.667 14.68 9.38 37.48 3.27
3836 3893 2.225382 TCATGTTGGAGGAGACCGTA 57.775 50.000 0.00 0.00 0.00 4.02
3839 3896 4.398319 TCTTTTTCATGTTGGAGGAGACC 58.602 43.478 0.00 0.00 0.00 3.85
3947 4004 8.363390 TGTGATATCTTTGTATGATCTGGAGAC 58.637 37.037 3.98 0.00 0.00 3.36
4027 4084 9.811995 TGGTTTACAGCTAGTATACATTTACAG 57.188 33.333 5.50 0.00 36.66 2.74
4059 4116 7.164826 GCTAATGTTAAGCACAAAGAATCATCG 59.835 37.037 0.00 0.00 39.50 3.84
4072 4129 6.655003 GGGAATATGCTAGCTAATGTTAAGCA 59.345 38.462 17.23 7.50 42.62 3.91
4204 4261 1.625818 ACAGAATCTTGGTCTTCGCCT 59.374 47.619 0.00 0.00 0.00 5.52
4431 4496 9.995957 ATAGAATCATACAAAGATATCGACTCG 57.004 33.333 0.00 0.00 0.00 4.18
4531 4602 7.484641 GCATTACAAATTTCTCAACGCAGATAA 59.515 33.333 0.00 0.00 0.00 1.75
4559 4630 4.894784 TCTTCTAGTGTAGTGCAAAAGGG 58.105 43.478 0.00 0.00 0.00 3.95
4588 4659 6.423001 GTGTTCGTCTAGTACAAGAAAATGGT 59.577 38.462 0.00 0.00 31.92 3.55
4589 4660 6.422701 TGTGTTCGTCTAGTACAAGAAAATGG 59.577 38.462 0.00 0.00 31.92 3.16
4597 4668 7.595604 TGTGATAATGTGTTCGTCTAGTACAA 58.404 34.615 0.00 0.00 31.92 2.41
4623 4694 2.201732 TCTAGAAAACGATCGCCATGC 58.798 47.619 16.60 0.00 0.00 4.06
4639 4711 1.722011 ATTTGTCCACGCGGTTCTAG 58.278 50.000 12.47 0.00 0.00 2.43
4666 4738 9.342308 AGTCTTGTTTCTCATTTGATTTGACTA 57.658 29.630 0.00 0.00 0.00 2.59
4686 4758 5.118050 TGCGACGAGTTTATTTACAGTCTTG 59.882 40.000 0.00 0.00 0.00 3.02
4814 4886 2.048503 ACGGCGGGAAAAGTCGAG 60.049 61.111 13.24 0.00 39.29 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.