Multiple sequence alignment - TraesCS7A01G258100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G258100 chr7A 100.000 6548 0 0 1 6548 248935132 248941679 0.000000e+00 12092
1 TraesCS7A01G258100 chr7A 92.517 3020 212 7 1629 4638 249282423 249279408 0.000000e+00 4313
2 TraesCS7A01G258100 chr7A 93.488 2073 98 16 1578 3631 248543747 248541693 0.000000e+00 3046
3 TraesCS7A01G258100 chr7A 93.051 1324 67 5 3628 4940 248541596 248540287 0.000000e+00 1912
4 TraesCS7A01G258100 chr7A 93.014 730 38 5 4958 5676 249278937 249278210 0.000000e+00 1053
5 TraesCS7A01G258100 chr7A 91.702 699 26 16 912 1593 248544448 248543765 0.000000e+00 941
6 TraesCS7A01G258100 chr7A 81.586 706 76 25 921 1593 249283233 249282549 9.660000e-148 534
7 TraesCS7A01G258100 chr7A 88.147 464 31 12 362 821 247275020 247274577 1.250000e-146 531
8 TraesCS7A01G258100 chr7A 82.910 591 52 20 912 1476 247274254 247273687 2.740000e-133 486
9 TraesCS7A01G258100 chr7A 89.706 340 28 6 4634 4969 249279317 249278981 1.690000e-115 427
10 TraesCS7A01G258100 chr7A 91.509 212 11 3 417 627 248545133 248544928 1.070000e-72 285
11 TraesCS7A01G258100 chr7A 94.828 174 9 0 6042 6215 248941342 248941515 8.370000e-69 272
12 TraesCS7A01G258100 chr7A 93.333 150 9 1 664 813 248544928 248544780 3.070000e-53 220
13 TraesCS7A01G258100 chr7A 76.902 368 53 22 4399 4744 248536234 248535877 5.220000e-41 180
14 TraesCS7A01G258100 chr7A 91.753 97 7 1 821 917 248544729 248544634 4.120000e-27 134
15 TraesCS7A01G258100 chr7A 82.051 156 27 1 6059 6213 263179892 263180047 1.480000e-26 132
16 TraesCS7A01G258100 chr7A 90.000 100 9 1 818 917 248544618 248544520 1.920000e-25 128
17 TraesCS7A01G258100 chr7D 97.175 4495 81 11 1578 6043 234560543 234556066 0.000000e+00 7555
18 TraesCS7A01G258100 chr7D 92.593 4104 270 17 1629 5711 234654550 234650460 0.000000e+00 5864
19 TraesCS7A01G258100 chr7D 90.049 1427 65 35 221 1593 234561964 234560561 0.000000e+00 1777
20 TraesCS7A01G258100 chr7D 83.821 717 55 27 912 1593 234355463 234354773 5.570000e-175 625
21 TraesCS7A01G258100 chr7D 85.192 574 49 19 268 821 234356322 234355765 2.060000e-154 556
22 TraesCS7A01G258100 chr7D 80.726 716 84 26 912 1593 234655401 234654706 5.860000e-140 508
23 TraesCS7A01G258100 chr7D 77.901 724 127 17 3811 4518 234352882 234352176 2.820000e-113 420
24 TraesCS7A01G258100 chr7D 89.408 321 34 0 6227 6547 246112734 246112414 7.910000e-109 405
25 TraesCS7A01G258100 chr7D 87.768 327 38 2 6222 6547 351405842 351405517 1.330000e-101 381
26 TraesCS7A01G258100 chr7D 87.812 320 39 0 6228 6547 177495819 177496138 6.200000e-100 375
27 TraesCS7A01G258100 chr7D 87.812 320 39 0 6225 6544 372242930 372243249 6.200000e-100 375
28 TraesCS7A01G258100 chr7D 93.204 206 14 0 1 206 234562155 234561950 2.970000e-78 303
29 TraesCS7A01G258100 chr7D 77.024 457 61 35 372 818 234656026 234655604 8.550000e-54 222
30 TraesCS7A01G258100 chr7D 82.278 158 28 0 6056 6213 425094769 425094926 3.180000e-28 137
31 TraesCS7A01G258100 chr7B 95.856 4513 112 20 1578 6043 206516059 206511575 0.000000e+00 7228
32 TraesCS7A01G258100 chr7B 92.446 4104 277 19 1629 5711 209645878 209641787 0.000000e+00 5830
33 TraesCS7A01G258100 chr7B 96.673 2224 54 3 1578 3783 209147877 209145656 0.000000e+00 3679
34 TraesCS7A01G258100 chr7B 92.058 2531 170 16 3202 5711 209323942 209321422 0.000000e+00 3531
35 TraesCS7A01G258100 chr7B 92.625 1600 54 28 4465 6043 209141575 209140019 0.000000e+00 2242
36 TraesCS7A01G258100 chr7B 97.552 776 16 2 818 1593 209148667 209147895 0.000000e+00 1325
37 TraesCS7A01G258100 chr7B 90.735 993 35 18 641 1593 206517052 206516077 0.000000e+00 1271
38 TraesCS7A01G258100 chr7B 83.380 722 54 29 912 1593 206344220 206343525 5.610000e-170 608
39 TraesCS7A01G258100 chr7B 82.749 684 74 24 934 1593 209646697 209646034 2.650000e-158 569
40 TraesCS7A01G258100 chr7B 89.083 458 26 10 371 821 206344988 206344548 1.240000e-151 547
41 TraesCS7A01G258100 chr7B 78.729 724 121 19 3811 4518 206341635 206340929 2.780000e-123 453
42 TraesCS7A01G258100 chr7B 86.875 320 23 6 626 928 209148985 209148668 2.260000e-89 340
43 TraesCS7A01G258100 chr7B 82.353 255 38 4 4557 4806 209139505 209139253 1.430000e-51 215
44 TraesCS7A01G258100 chr7B 90.845 142 11 2 221 360 209149579 209149438 8.670000e-44 189
45 TraesCS7A01G258100 chr7B 88.125 160 12 4 48 206 206517592 206517439 4.030000e-42 183
46 TraesCS7A01G258100 chr7B 91.000 100 8 1 818 917 206344390 206344292 4.120000e-27 134
47 TraesCS7A01G258100 chr3B 85.806 775 88 12 835 1603 145509143 145508385 0.000000e+00 802
48 TraesCS7A01G258100 chr3B 77.512 418 74 15 4119 4518 145506168 145505753 3.950000e-57 233
49 TraesCS7A01G258100 chr3B 81.122 196 16 10 411 597 145509894 145509711 3.180000e-28 137
50 TraesCS7A01G258100 chr1D 89.408 321 32 2 6228 6547 127196249 127195930 2.840000e-108 403
51 TraesCS7A01G258100 chr1D 88.162 321 35 3 6228 6547 127213353 127213035 4.790000e-101 379
52 TraesCS7A01G258100 chr4A 88.438 320 37 0 6228 6547 184266258 184265939 2.860000e-103 387
53 TraesCS7A01G258100 chr2D 88.438 320 37 0 6228 6547 456952291 456951972 2.860000e-103 387
54 TraesCS7A01G258100 chr3D 88.050 318 38 0 6230 6547 346982032 346981715 1.720000e-100 377
55 TraesCS7A01G258100 chr3D 83.019 159 27 0 6056 6214 200380543 200380701 1.900000e-30 145
56 TraesCS7A01G258100 chr5A 84.076 157 25 0 6058 6214 185641317 185641473 1.140000e-32 152
57 TraesCS7A01G258100 chr4D 84.768 151 21 2 6064 6214 259858722 259858870 4.090000e-32 150
58 TraesCS7A01G258100 chr5D 83.125 160 27 0 6056 6215 195353301 195353460 5.290000e-31 147
59 TraesCS7A01G258100 chr6D 82.390 159 28 0 6056 6214 183793442 183793600 8.850000e-29 139
60 TraesCS7A01G258100 chr6B 82.278 158 22 5 6059 6213 331503470 331503624 1.480000e-26 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G258100 chr7A 248935132 248941679 6547 False 6182.000000 12092 97.414000 1 6548 2 chr7A.!!$F2 6547
1 TraesCS7A01G258100 chr7A 249278210 249283233 5023 True 1581.750000 4313 89.205750 921 5676 4 chr7A.!!$R4 4755
2 TraesCS7A01G258100 chr7A 248540287 248545133 4846 True 952.285714 3046 92.119429 417 4940 7 chr7A.!!$R3 4523
3 TraesCS7A01G258100 chr7A 247273687 247275020 1333 True 508.500000 531 85.528500 362 1476 2 chr7A.!!$R2 1114
4 TraesCS7A01G258100 chr7D 234556066 234562155 6089 True 3211.666667 7555 93.476000 1 6043 3 chr7D.!!$R4 6042
5 TraesCS7A01G258100 chr7D 234650460 234656026 5566 True 2198.000000 5864 83.447667 372 5711 3 chr7D.!!$R5 5339
6 TraesCS7A01G258100 chr7D 234352176 234356322 4146 True 533.666667 625 82.304667 268 4518 3 chr7D.!!$R3 4250
7 TraesCS7A01G258100 chr7B 209321422 209323942 2520 True 3531.000000 3531 92.058000 3202 5711 1 chr7B.!!$R1 2509
8 TraesCS7A01G258100 chr7B 209641787 209646697 4910 True 3199.500000 5830 87.597500 934 5711 2 chr7B.!!$R6 4777
9 TraesCS7A01G258100 chr7B 206511575 206517592 6017 True 2894.000000 7228 91.572000 48 6043 3 chr7B.!!$R3 5995
10 TraesCS7A01G258100 chr7B 209145656 209149579 3923 True 1383.250000 3679 92.986250 221 3783 4 chr7B.!!$R5 3562
11 TraesCS7A01G258100 chr7B 209139253 209141575 2322 True 1228.500000 2242 87.489000 4465 6043 2 chr7B.!!$R4 1578
12 TraesCS7A01G258100 chr7B 206340929 206344988 4059 True 435.500000 608 85.548000 371 4518 4 chr7B.!!$R2 4147
13 TraesCS7A01G258100 chr3B 145505753 145509894 4141 True 390.666667 802 81.480000 411 4518 3 chr3B.!!$R1 4107

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 1313 1.314730 TTCTCGGTTGCTTTTCCACC 58.685 50.000 0.0 0.0 0.00 4.61 F
1593 2476 1.080569 CGTTGCAAAGGATGGGTGC 60.081 57.895 0.0 0.0 38.78 5.01 F
2135 3164 0.557729 GGATGGGATGTGTGGGGAAT 59.442 55.000 0.0 0.0 0.00 3.01 F
2524 3556 2.171840 CTTTGGAGGAGGAGACGAAGA 58.828 52.381 0.0 0.0 0.00 2.87 F
3591 5222 1.594331 GTCCACCTCCACTTGTTGAC 58.406 55.000 0.0 0.0 0.00 3.18 F
4181 5939 1.098050 CAGGATACCAGCAAAGGCAC 58.902 55.000 0.0 0.0 39.67 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 2575 1.152030 AGGCAGGTCCAGGTTCTCA 60.152 57.895 0.0 0.0 37.29 3.27 R
2716 3757 1.522580 GAGATCCACCGCTTCTGGC 60.523 63.158 0.0 0.0 37.64 4.85 R
3429 5060 2.154854 TCTTCTGAGTCTGCAAACGG 57.845 50.000 0.0 0.0 0.00 4.44 R
4181 5939 1.457346 CAGCTTTACCTGCTTCCCAG 58.543 55.000 0.0 0.0 38.92 4.45 R
4890 6780 2.280628 GATACTGGTACACTGCCAAGC 58.719 52.381 0.0 0.0 35.32 4.01 R
6108 8238 0.323302 TTGTTGATAGAGCCACGCCA 59.677 50.000 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.097629 CACGCTTAGAGTTGATCTCCGA 59.902 50.000 0.00 0.00 43.71 4.55
26 27 2.097791 GCTTAGAGTTGATCTCCGACGT 59.902 50.000 0.00 0.00 43.71 4.34
42 43 3.050619 CGACGTCTAAATCTATGTGGGC 58.949 50.000 14.70 0.00 0.00 5.36
45 46 3.199071 ACGTCTAAATCTATGTGGGCCAA 59.801 43.478 8.40 0.00 0.00 4.52
78 79 3.368539 TGATGTCGGTTGCGTTTATACAC 59.631 43.478 0.00 0.00 0.00 2.90
352 356 1.737008 GCGGACTCGTGACCTTTCC 60.737 63.158 4.58 0.00 38.89 3.13
357 361 2.224209 GGACTCGTGACCTTTCCAGAAA 60.224 50.000 0.00 0.00 0.00 2.52
377 425 2.359975 CTCCAAACCCTCGGCACC 60.360 66.667 0.00 0.00 0.00 5.01
686 1044 2.252714 GACTGGTGGGTTTCTCTCTCT 58.747 52.381 0.00 0.00 0.00 3.10
759 1117 2.096496 GCTCGGATTCTTCATGTGTTGG 59.904 50.000 0.00 0.00 0.00 3.77
763 1121 1.812571 GATTCTTCATGTGTTGGCGGT 59.187 47.619 0.00 0.00 0.00 5.68
775 1134 2.675423 GGCGGTGGAGGTTTTCCC 60.675 66.667 0.00 0.00 46.19 3.97
816 1313 1.314730 TTCTCGGTTGCTTTTCCACC 58.685 50.000 0.00 0.00 0.00 4.61
913 1520 3.066760 GGAAAGTTTATGGCGCTGCTAAT 59.933 43.478 7.64 0.00 0.00 1.73
987 1796 6.184789 TCTTGTTGTTTCTTAGTTTCCAGGT 58.815 36.000 0.00 0.00 0.00 4.00
993 1802 4.351874 TTCTTAGTTTCCAGGTGACAGG 57.648 45.455 0.00 0.00 38.62 4.00
994 1803 2.038557 TCTTAGTTTCCAGGTGACAGGC 59.961 50.000 0.00 0.00 36.83 4.85
1034 1845 4.467107 GGAGAGGGCGGAGGAGGT 62.467 72.222 0.00 0.00 0.00 3.85
1590 2473 1.334869 GATAGCGTTGCAAAGGATGGG 59.665 52.381 14.31 0.00 32.44 4.00
1593 2476 1.080569 CGTTGCAAAGGATGGGTGC 60.081 57.895 0.00 0.00 38.78 5.01
1595 2478 1.228398 TTGCAAAGGATGGGTGCGA 60.228 52.632 0.00 0.00 41.27 5.10
1596 2479 1.243342 TTGCAAAGGATGGGTGCGAG 61.243 55.000 0.00 0.00 41.27 5.03
1623 2575 1.073199 CAAGAACCCGCAGAACCCT 59.927 57.895 0.00 0.00 0.00 4.34
1625 2577 1.415672 AAGAACCCGCAGAACCCTGA 61.416 55.000 0.00 0.00 43.02 3.86
1722 2751 0.999406 GCGACTGCACATACGACATT 59.001 50.000 0.00 0.00 42.15 2.71
2105 3134 2.275380 GGGTTGAGCGGGCAATGTT 61.275 57.895 0.00 0.00 0.00 2.71
2135 3164 0.557729 GGATGGGATGTGTGGGGAAT 59.442 55.000 0.00 0.00 0.00 3.01
2188 3217 2.358898 GCAATAGTGACCGGCAATGATT 59.641 45.455 0.00 0.00 0.00 2.57
2425 3454 4.600547 TGGATCCAGAGATGCTATTGGAAT 59.399 41.667 11.44 0.00 42.55 3.01
2481 3513 4.164030 TCTTATATGCAGGACAGCCAAGAA 59.836 41.667 0.00 0.00 36.29 2.52
2524 3556 2.171840 CTTTGGAGGAGGAGACGAAGA 58.828 52.381 0.00 0.00 0.00 2.87
2652 3693 4.154737 TCAGTTTTGGATCTGCAATTCGAG 59.845 41.667 0.00 0.00 0.00 4.04
2774 3815 3.190535 GCACTATTCCAACAAACCGACAT 59.809 43.478 0.00 0.00 0.00 3.06
2835 3882 4.103153 TGTGATTCTCAGTTTCCTGGTTCT 59.897 41.667 0.00 0.00 39.31 3.01
3337 4968 5.859205 AAATATGCAAAGGATGAGGGTTC 57.141 39.130 0.00 0.00 0.00 3.62
3429 5060 2.690778 GGAGGATGTTGCACACGGC 61.691 63.158 0.00 0.00 45.13 5.68
3591 5222 1.594331 GTCCACCTCCACTTGTTGAC 58.406 55.000 0.00 0.00 0.00 3.18
3654 5385 1.625818 GAAGACAAGGGGAGAGCTCAA 59.374 52.381 17.77 0.00 0.00 3.02
3656 5387 2.273619 AGACAAGGGGAGAGCTCAAAT 58.726 47.619 17.77 0.00 0.00 2.32
3836 5567 3.187227 CCGATGATAGCAAGTACCAATGC 59.813 47.826 7.59 7.59 42.87 3.56
3935 5672 6.869695 TGAATAGCTTGTCGGTAGAATGTAA 58.130 36.000 0.00 0.00 0.00 2.41
4160 5909 2.262637 CCTGTTGAGTACCCAGGGTAA 58.737 52.381 21.00 3.36 40.12 2.85
4181 5939 1.098050 CAGGATACCAGCAAAGGCAC 58.902 55.000 0.00 0.00 39.67 5.01
4318 6079 5.122396 CCTGTACTAACCATTCAACTGAAGC 59.878 44.000 0.00 0.00 37.48 3.86
4470 6231 5.811399 TTATGCCTGTTCCATTAAGTTCG 57.189 39.130 0.00 0.00 0.00 3.95
4571 6353 2.327568 CGGCATTGCAGGTTACAAAAG 58.672 47.619 11.39 0.00 0.00 2.27
4615 6398 9.918630 AAAAATATGTCAGACTTCAGGAATTTG 57.081 29.630 1.31 0.00 0.00 2.32
4761 6641 6.595716 AGGTATCAGCTTAATTTGAGTGTGTC 59.404 38.462 0.00 0.00 0.00 3.67
4890 6780 3.301906 CGTCGAGCACAAACTCTATTCAG 59.698 47.826 0.00 0.00 34.35 3.02
4903 6793 3.861840 TCTATTCAGCTTGGCAGTGTAC 58.138 45.455 0.00 0.00 0.00 2.90
5127 7082 7.879070 AGTAAGTACGTAATCAGTCACTTGAA 58.121 34.615 0.00 0.00 0.00 2.69
5212 7167 3.069872 TGTGAAGAAAGGCATTGCATTGT 59.930 39.130 9.57 0.00 31.38 2.71
5213 7168 4.060205 GTGAAGAAAGGCATTGCATTGTT 58.940 39.130 9.57 8.66 31.38 2.83
5333 7293 0.108804 CGCCTAGTCGGTGTCATTGT 60.109 55.000 0.00 0.00 38.52 2.71
5417 7377 1.544314 GCAGAGCAGTGGTTCTTCCTT 60.544 52.381 0.00 0.00 31.56 3.36
5478 7438 2.826725 CCTAGAAGAAGTTCTCGGGTGT 59.173 50.000 5.70 0.00 42.40 4.16
5639 7599 5.994887 AGATAGATACACAGAGTCGTCAC 57.005 43.478 0.00 0.00 0.00 3.67
5667 7627 3.058777 CCAATTTTGTTGCATTGGCTGAC 60.059 43.478 1.73 0.00 42.31 3.51
5740 7701 4.213482 GGTCTGTTCACACTGTTCATAACC 59.787 45.833 0.00 0.00 0.00 2.85
5741 7702 4.814234 GTCTGTTCACACTGTTCATAACCA 59.186 41.667 0.00 0.00 0.00 3.67
5745 7706 6.734137 TGTTCACACTGTTCATAACCATTTC 58.266 36.000 0.00 0.00 0.00 2.17
5790 7755 5.673337 TTTTTCTGTCCATGAGAAACTCG 57.327 39.130 7.40 0.00 38.79 4.18
5791 7756 4.336889 TTTCTGTCCATGAGAAACTCGT 57.663 40.909 4.42 0.00 35.07 4.18
5931 7896 6.071447 CCTTTGATCATTGTTGTGATGGGTAA 60.071 38.462 0.00 0.00 38.88 2.85
6031 7996 2.096318 GTGTCGGAGTAGCGAGTATAGC 60.096 54.545 0.00 0.00 36.79 2.97
6043 8008 3.355270 CGAGTATAGCAAGTCTGTGTCG 58.645 50.000 0.00 0.00 0.00 4.35
6052 8063 1.911057 AGTCTGTGTCGGATGTCTCA 58.089 50.000 0.00 0.00 0.00 3.27
6053 8064 2.239400 AGTCTGTGTCGGATGTCTCAA 58.761 47.619 0.00 0.00 0.00 3.02
6056 8067 3.190744 GTCTGTGTCGGATGTCTCAAGTA 59.809 47.826 0.00 0.00 0.00 2.24
6061 8072 3.190744 TGTCGGATGTCTCAAGTAGTGTC 59.809 47.826 0.00 0.00 0.00 3.67
6063 8074 2.478031 CGGATGTCTCAAGTAGTGTCGG 60.478 54.545 0.00 0.00 0.00 4.79
6064 8075 2.531206 GATGTCTCAAGTAGTGTCGGC 58.469 52.381 0.00 0.00 0.00 5.54
6065 8076 0.240145 TGTCTCAAGTAGTGTCGGCG 59.760 55.000 0.00 0.00 0.00 6.46
6066 8077 0.240411 GTCTCAAGTAGTGTCGGCGT 59.760 55.000 6.85 0.00 0.00 5.68
6067 8078 0.956633 TCTCAAGTAGTGTCGGCGTT 59.043 50.000 6.85 0.00 0.00 4.84
6068 8079 2.095567 GTCTCAAGTAGTGTCGGCGTTA 60.096 50.000 6.85 0.00 0.00 3.18
6069 8080 2.751259 TCTCAAGTAGTGTCGGCGTTAT 59.249 45.455 6.85 0.00 0.00 1.89
6070 8081 2.852413 CTCAAGTAGTGTCGGCGTTATG 59.148 50.000 6.85 0.00 0.00 1.90
6071 8082 2.488937 TCAAGTAGTGTCGGCGTTATGA 59.511 45.455 6.85 0.00 0.00 2.15
6076 8206 2.810650 AGTGTCGGCGTTATGAGAATC 58.189 47.619 6.85 0.00 0.00 2.52
6091 8221 4.624913 TGAGAATCAGGGTATCCAGACTT 58.375 43.478 0.00 0.00 42.56 3.01
6092 8222 4.406972 TGAGAATCAGGGTATCCAGACTTG 59.593 45.833 0.00 0.00 42.56 3.16
6093 8223 3.135530 AGAATCAGGGTATCCAGACTTGC 59.864 47.826 0.00 0.00 31.12 4.01
6094 8224 1.204146 TCAGGGTATCCAGACTTGCC 58.796 55.000 0.00 0.00 34.83 4.52
6095 8225 1.207791 CAGGGTATCCAGACTTGCCT 58.792 55.000 0.00 0.00 34.83 4.75
6096 8226 1.134280 CAGGGTATCCAGACTTGCCTG 60.134 57.143 0.00 0.00 34.83 4.85
6097 8227 0.464554 GGGTATCCAGACTTGCCTGC 60.465 60.000 0.00 0.00 32.97 4.85
6098 8228 0.464554 GGTATCCAGACTTGCCTGCC 60.465 60.000 0.00 0.00 32.97 4.85
6099 8229 0.543749 GTATCCAGACTTGCCTGCCT 59.456 55.000 0.00 0.00 32.97 4.75
6100 8230 0.543277 TATCCAGACTTGCCTGCCTG 59.457 55.000 0.00 0.00 32.97 4.85
6101 8231 2.833604 ATCCAGACTTGCCTGCCTGC 62.834 60.000 0.00 0.00 32.97 4.85
6102 8232 3.429141 CAGACTTGCCTGCCTGCG 61.429 66.667 0.00 0.00 0.00 5.18
6103 8233 4.711949 AGACTTGCCTGCCTGCGG 62.712 66.667 0.00 0.00 0.00 5.69
6122 8252 4.368391 CCATGGCGTGGCTCTATC 57.632 61.111 13.80 0.00 42.12 2.08
6123 8253 1.447217 CCATGGCGTGGCTCTATCA 59.553 57.895 13.80 0.00 42.12 2.15
6124 8254 0.179048 CCATGGCGTGGCTCTATCAA 60.179 55.000 13.80 0.00 42.12 2.57
6125 8255 0.940126 CATGGCGTGGCTCTATCAAC 59.060 55.000 0.00 0.00 0.00 3.18
6126 8256 0.541392 ATGGCGTGGCTCTATCAACA 59.459 50.000 0.00 0.00 0.00 3.33
6127 8257 0.323302 TGGCGTGGCTCTATCAACAA 59.677 50.000 0.00 0.00 0.00 2.83
6128 8258 0.727398 GGCGTGGCTCTATCAACAAC 59.273 55.000 0.00 0.00 0.00 3.32
6129 8259 0.727398 GCGTGGCTCTATCAACAACC 59.273 55.000 0.00 0.00 0.00 3.77
6130 8260 1.676014 GCGTGGCTCTATCAACAACCT 60.676 52.381 0.00 0.00 0.00 3.50
6131 8261 2.002586 CGTGGCTCTATCAACAACCTG 58.997 52.381 0.00 0.00 0.00 4.00
6132 8262 2.359900 GTGGCTCTATCAACAACCTGG 58.640 52.381 0.00 0.00 0.00 4.45
6133 8263 1.985159 TGGCTCTATCAACAACCTGGT 59.015 47.619 0.00 0.00 0.00 4.00
6134 8264 3.055385 GTGGCTCTATCAACAACCTGGTA 60.055 47.826 0.00 0.00 0.00 3.25
6135 8265 3.780294 TGGCTCTATCAACAACCTGGTAT 59.220 43.478 0.00 0.00 0.00 2.73
6136 8266 4.130118 GGCTCTATCAACAACCTGGTATG 58.870 47.826 0.00 3.63 0.00 2.39
6137 8267 4.130118 GCTCTATCAACAACCTGGTATGG 58.870 47.826 0.00 0.00 0.00 2.74
6138 8268 4.130118 CTCTATCAACAACCTGGTATGGC 58.870 47.826 0.00 0.00 0.00 4.40
6154 8284 2.584835 TGGCACATCTTTAGCACCTT 57.415 45.000 0.00 0.00 0.00 3.50
6155 8285 2.436417 TGGCACATCTTTAGCACCTTC 58.564 47.619 0.00 0.00 0.00 3.46
6156 8286 2.224744 TGGCACATCTTTAGCACCTTCA 60.225 45.455 0.00 0.00 0.00 3.02
6157 8287 2.819608 GGCACATCTTTAGCACCTTCAA 59.180 45.455 0.00 0.00 0.00 2.69
6158 8288 3.119708 GGCACATCTTTAGCACCTTCAAG 60.120 47.826 0.00 0.00 0.00 3.02
6159 8289 3.753272 GCACATCTTTAGCACCTTCAAGA 59.247 43.478 0.00 0.00 0.00 3.02
6160 8290 4.378874 GCACATCTTTAGCACCTTCAAGAC 60.379 45.833 0.00 0.00 0.00 3.01
6161 8291 4.756642 CACATCTTTAGCACCTTCAAGACA 59.243 41.667 0.00 0.00 0.00 3.41
6162 8292 5.239306 CACATCTTTAGCACCTTCAAGACAA 59.761 40.000 0.00 0.00 0.00 3.18
6163 8293 5.471456 ACATCTTTAGCACCTTCAAGACAAG 59.529 40.000 0.00 0.00 0.00 3.16
6165 8295 5.057149 TCTTTAGCACCTTCAAGACAAGAC 58.943 41.667 0.00 0.00 0.00 3.01
6167 8297 1.202818 AGCACCTTCAAGACAAGACCC 60.203 52.381 0.00 0.00 0.00 4.46
6168 8298 1.202818 GCACCTTCAAGACAAGACCCT 60.203 52.381 0.00 0.00 0.00 4.34
6169 8299 2.772287 CACCTTCAAGACAAGACCCTC 58.228 52.381 0.00 0.00 0.00 4.30
6170 8300 2.104792 CACCTTCAAGACAAGACCCTCA 59.895 50.000 0.00 0.00 0.00 3.86
6171 8301 2.982488 ACCTTCAAGACAAGACCCTCAT 59.018 45.455 0.00 0.00 0.00 2.90
6172 8302 3.244700 ACCTTCAAGACAAGACCCTCATG 60.245 47.826 0.00 0.00 0.00 3.07
6183 8313 4.201122 CCTCATGAGGGGCCAGGC 62.201 72.222 31.14 1.26 44.87 4.85
6184 8314 4.559063 CTCATGAGGGGCCAGGCG 62.559 72.222 15.38 0.00 0.00 5.52
6200 8330 3.103911 CGTCACGAGGCGGACAAC 61.104 66.667 0.00 0.00 33.66 3.32
6201 8331 2.028484 GTCACGAGGCGGACAACA 59.972 61.111 0.00 0.00 34.22 3.33
6203 8333 3.041940 CACGAGGCGGACAACACC 61.042 66.667 0.00 0.00 0.00 4.16
6205 8335 2.280524 CGAGGCGGACAACACCAA 60.281 61.111 0.00 0.00 0.00 3.67
6206 8336 2.317609 CGAGGCGGACAACACCAAG 61.318 63.158 0.00 0.00 0.00 3.61
6207 8337 1.070786 GAGGCGGACAACACCAAGA 59.929 57.895 0.00 0.00 0.00 3.02
6209 8339 2.258726 GGCGGACAACACCAAGACC 61.259 63.158 0.00 0.00 0.00 3.85
6212 8342 0.602905 CGGACAACACCAAGACCTCC 60.603 60.000 0.00 0.00 0.00 4.30
6213 8343 0.602905 GGACAACACCAAGACCTCCG 60.603 60.000 0.00 0.00 0.00 4.63
6217 8347 1.056660 AACACCAAGACCTCCGATGT 58.943 50.000 0.00 0.00 0.00 3.06
6219 8349 0.898320 CACCAAGACCTCCGATGTCT 59.102 55.000 0.77 0.77 44.75 3.41
6221 8351 1.186200 CCAAGACCTCCGATGTCTCA 58.814 55.000 6.77 0.00 42.10 3.27
6222 8352 1.550524 CCAAGACCTCCGATGTCTCAA 59.449 52.381 6.77 0.00 42.10 3.02
6224 8354 2.223803 AGACCTCCGATGTCTCAAGT 57.776 50.000 0.77 0.00 38.71 3.16
6225 8355 3.367646 AGACCTCCGATGTCTCAAGTA 57.632 47.619 0.77 0.00 38.71 2.24
6226 8356 3.283751 AGACCTCCGATGTCTCAAGTAG 58.716 50.000 0.77 0.00 38.71 2.57
6227 8357 3.018149 GACCTCCGATGTCTCAAGTAGT 58.982 50.000 0.00 0.00 0.00 2.73
6228 8358 2.755655 ACCTCCGATGTCTCAAGTAGTG 59.244 50.000 0.00 0.00 0.00 2.74
6229 8359 2.755655 CCTCCGATGTCTCAAGTAGTGT 59.244 50.000 0.00 0.00 0.00 3.55
6232 8362 2.478031 CCGATGTCTCAAGTAGTGTCGG 60.478 54.545 0.00 0.00 37.81 4.79
6233 8363 2.531206 GATGTCTCAAGTAGTGTCGGC 58.469 52.381 0.00 0.00 0.00 5.54
6234 8364 0.240145 TGTCTCAAGTAGTGTCGGCG 59.760 55.000 0.00 0.00 0.00 6.46
6235 8365 0.240411 GTCTCAAGTAGTGTCGGCGT 59.760 55.000 6.85 0.00 0.00 5.68
6238 8368 0.956633 TCAAGTAGTGTCGGCGTTCT 59.043 50.000 6.85 6.63 0.00 3.01
6239 8369 1.060713 CAAGTAGTGTCGGCGTTCTG 58.939 55.000 6.85 0.00 0.00 3.02
6242 8372 0.520404 GTAGTGTCGGCGTTCTGAGA 59.480 55.000 6.85 0.00 0.00 3.27
6244 8374 0.603569 AGTGTCGGCGTTCTGAGAAT 59.396 50.000 6.85 0.00 0.00 2.40
6266 8396 1.377333 GGTACCCAGACTTGCCTGC 60.377 63.158 0.00 0.00 32.97 4.85
6267 8397 1.377333 GTACCCAGACTTGCCTGCC 60.377 63.158 0.00 0.00 32.97 4.85
6268 8398 1.538876 TACCCAGACTTGCCTGCCT 60.539 57.895 0.00 0.00 32.97 4.75
6269 8399 1.841302 TACCCAGACTTGCCTGCCTG 61.841 60.000 0.00 0.00 32.97 4.85
6271 8401 3.429141 CAGACTTGCCTGCCTGCG 61.429 66.667 0.00 0.00 0.00 5.18
6272 8402 4.711949 AGACTTGCCTGCCTGCGG 62.712 66.667 0.00 0.00 0.00 5.69
6291 8421 4.368391 CCATGGCGTGGCTCTATC 57.632 61.111 13.80 0.00 42.12 2.08
6292 8422 1.447217 CCATGGCGTGGCTCTATCA 59.553 57.895 13.80 0.00 42.12 2.15
6293 8423 0.179048 CCATGGCGTGGCTCTATCAA 60.179 55.000 13.80 0.00 42.12 2.57
6294 8424 0.940126 CATGGCGTGGCTCTATCAAC 59.060 55.000 0.00 0.00 0.00 3.18
6295 8425 0.541392 ATGGCGTGGCTCTATCAACA 59.459 50.000 0.00 0.00 0.00 3.33
6297 8427 1.432270 GGCGTGGCTCTATCAACAGC 61.432 60.000 0.00 0.00 34.65 4.40
6305 8435 2.799917 GCTCTATCAACAGCCTGGTACG 60.800 54.545 0.00 0.00 0.00 3.67
6306 8436 1.754803 TCTATCAACAGCCTGGTACGG 59.245 52.381 0.00 0.00 0.00 4.02
6307 8437 0.177141 TATCAACAGCCTGGTACGGC 59.823 55.000 3.74 3.74 45.54 5.68
6313 8443 2.584608 GCCTGGTACGGCACATCT 59.415 61.111 6.89 0.00 44.81 2.90
6314 8444 1.078426 GCCTGGTACGGCACATCTT 60.078 57.895 6.89 0.00 44.81 2.40
6315 8445 1.090052 GCCTGGTACGGCACATCTTC 61.090 60.000 6.89 0.00 44.81 2.87
6317 8447 1.645034 CTGGTACGGCACATCTTCAG 58.355 55.000 0.00 0.00 0.00 3.02
6318 8448 0.391130 TGGTACGGCACATCTTCAGC 60.391 55.000 0.00 0.00 0.00 4.26
6319 8449 0.391130 GGTACGGCACATCTTCAGCA 60.391 55.000 0.00 0.00 0.00 4.41
6320 8450 0.721718 GTACGGCACATCTTCAGCAC 59.278 55.000 0.00 0.00 0.00 4.40
6321 8451 0.391130 TACGGCACATCTTCAGCACC 60.391 55.000 0.00 0.00 0.00 5.01
6322 8452 1.376424 CGGCACATCTTCAGCACCT 60.376 57.895 0.00 0.00 0.00 4.00
6323 8453 0.957395 CGGCACATCTTCAGCACCTT 60.957 55.000 0.00 0.00 0.00 3.50
6324 8454 0.807496 GGCACATCTTCAGCACCTTC 59.193 55.000 0.00 0.00 0.00 3.46
6326 8456 1.881973 GCACATCTTCAGCACCTTCAA 59.118 47.619 0.00 0.00 0.00 2.69
6328 8458 3.405831 CACATCTTCAGCACCTTCAAGA 58.594 45.455 0.00 0.00 0.00 3.02
6330 8460 3.181451 ACATCTTCAGCACCTTCAAGACA 60.181 43.478 0.00 0.00 0.00 3.41
6331 8461 3.558931 TCTTCAGCACCTTCAAGACAA 57.441 42.857 0.00 0.00 0.00 3.18
6333 8463 3.134623 TCTTCAGCACCTTCAAGACAAGA 59.865 43.478 0.00 0.00 0.00 3.02
6334 8464 2.838736 TCAGCACCTTCAAGACAAGAC 58.161 47.619 0.00 0.00 0.00 3.01
6335 8465 1.876156 CAGCACCTTCAAGACAAGACC 59.124 52.381 0.00 0.00 0.00 3.85
6336 8466 1.202818 AGCACCTTCAAGACAAGACCC 60.203 52.381 0.00 0.00 0.00 4.46
6337 8467 1.202818 GCACCTTCAAGACAAGACCCT 60.203 52.381 0.00 0.00 0.00 4.34
6338 8468 2.772287 CACCTTCAAGACAAGACCCTC 58.228 52.381 0.00 0.00 0.00 4.30
6339 8469 1.344763 ACCTTCAAGACAAGACCCTCG 59.655 52.381 0.00 0.00 0.00 4.63
6340 8470 1.344763 CCTTCAAGACAAGACCCTCGT 59.655 52.381 0.00 0.00 0.00 4.18
6341 8471 2.408050 CTTCAAGACAAGACCCTCGTG 58.592 52.381 0.00 0.00 32.10 4.35
6342 8472 1.699730 TCAAGACAAGACCCTCGTGA 58.300 50.000 0.00 0.00 30.40 4.35
6374 8504 4.351938 CGAGGCGGACGACACCAA 62.352 66.667 0.00 0.00 0.00 3.67
6375 8505 2.432628 GAGGCGGACGACACCAAG 60.433 66.667 0.00 0.00 0.00 3.61
6377 8507 2.737376 GGCGGACGACACCAAGAC 60.737 66.667 0.00 0.00 0.00 3.01
6378 8508 2.737376 GCGGACGACACCAAGACC 60.737 66.667 0.00 0.00 0.00 3.85
6382 8512 1.080705 GACGACACCAAGACCTCCG 60.081 63.158 0.00 0.00 0.00 4.63
6383 8513 1.521450 GACGACACCAAGACCTCCGA 61.521 60.000 0.00 0.00 0.00 4.55
6384 8514 1.111116 ACGACACCAAGACCTCCGAA 61.111 55.000 0.00 0.00 0.00 4.30
6385 8515 0.388649 CGACACCAAGACCTCCGAAG 60.389 60.000 0.00 0.00 0.00 3.79
6398 8528 3.053896 CGAAGGAAACGGCCACCC 61.054 66.667 2.24 0.00 0.00 4.61
6399 8529 2.675423 GAAGGAAACGGCCACCCC 60.675 66.667 2.24 0.00 0.00 4.95
6401 8531 3.507377 AAGGAAACGGCCACCCCAG 62.507 63.158 2.24 0.00 0.00 4.45
6410 8540 2.352805 CCACCCCAGGCTGACTTC 59.647 66.667 17.94 0.00 0.00 3.01
6411 8541 2.352805 CACCCCAGGCTGACTTCC 59.647 66.667 17.94 0.00 0.00 3.46
6413 8543 3.003173 CCCCAGGCTGACTTCCGA 61.003 66.667 17.94 0.00 0.00 4.55
6414 8544 2.581354 CCCAGGCTGACTTCCGAG 59.419 66.667 17.94 0.00 0.00 4.63
6415 8545 2.581354 CCAGGCTGACTTCCGAGG 59.419 66.667 17.94 0.00 0.00 4.63
6416 8546 1.984570 CCAGGCTGACTTCCGAGGA 60.985 63.158 17.94 0.00 0.00 3.71
6417 8547 1.515020 CAGGCTGACTTCCGAGGAG 59.485 63.158 9.42 0.00 0.00 3.69
6418 8548 2.185608 GGCTGACTTCCGAGGAGC 59.814 66.667 0.00 0.00 33.80 4.70
6419 8549 2.202676 GCTGACTTCCGAGGAGCG 60.203 66.667 0.00 0.00 40.47 5.03
6431 8561 2.940147 CGAGGAGCGGAGATTTCTATG 58.060 52.381 0.00 0.00 36.03 2.23
6432 8562 2.682836 GAGGAGCGGAGATTTCTATGC 58.317 52.381 0.00 0.00 0.00 3.14
6433 8563 2.036475 GAGGAGCGGAGATTTCTATGCA 59.964 50.000 0.00 0.00 0.00 3.96
6434 8564 2.036992 AGGAGCGGAGATTTCTATGCAG 59.963 50.000 0.00 0.00 0.00 4.41
6435 8565 2.411904 GAGCGGAGATTTCTATGCAGG 58.588 52.381 0.00 0.00 0.00 4.85
6436 8566 0.871057 GCGGAGATTTCTATGCAGGC 59.129 55.000 0.00 0.00 0.00 4.85
6437 8567 1.143305 CGGAGATTTCTATGCAGGCG 58.857 55.000 0.00 0.00 0.00 5.52
6439 8569 0.871057 GAGATTTCTATGCAGGCGCC 59.129 55.000 21.89 21.89 37.32 6.53
6440 8570 0.471617 AGATTTCTATGCAGGCGCCT 59.528 50.000 27.08 27.08 37.32 5.52
6441 8571 1.694150 AGATTTCTATGCAGGCGCCTA 59.306 47.619 32.30 16.51 37.32 3.93
6442 8572 1.801178 GATTTCTATGCAGGCGCCTAC 59.199 52.381 32.30 26.02 37.32 3.18
6443 8573 0.179056 TTTCTATGCAGGCGCCTACC 60.179 55.000 32.30 23.31 37.32 3.18
6444 8574 1.048724 TTCTATGCAGGCGCCTACCT 61.049 55.000 32.30 19.82 42.30 3.08
6445 8575 1.005630 CTATGCAGGCGCCTACCTC 60.006 63.158 32.30 18.57 38.26 3.85
6446 8576 2.755542 CTATGCAGGCGCCTACCTCG 62.756 65.000 32.30 18.20 38.26 4.63
6449 8579 3.449227 CAGGCGCCTACCTCGTGA 61.449 66.667 32.30 0.00 38.26 4.35
6450 8580 3.141488 AGGCGCCTACCTCGTGAG 61.141 66.667 31.86 0.00 33.62 3.51
6461 8591 1.714794 CCTCGTGAGGTTGATGTGAC 58.285 55.000 7.79 0.00 43.61 3.67
6463 8593 0.666274 TCGTGAGGTTGATGTGACGC 60.666 55.000 0.00 0.00 0.00 5.19
6464 8594 1.626654 CGTGAGGTTGATGTGACGCC 61.627 60.000 0.00 0.00 0.00 5.68
6466 8596 0.320683 TGAGGTTGATGTGACGCCAG 60.321 55.000 0.00 0.00 0.00 4.85
6468 8598 2.690778 GGTTGATGTGACGCCAGCC 61.691 63.158 0.00 0.00 0.00 4.85
6470 8600 1.002257 TTGATGTGACGCCAGCCAT 60.002 52.632 0.00 0.00 0.00 4.40
6471 8601 1.307355 TTGATGTGACGCCAGCCATG 61.307 55.000 0.00 0.00 0.00 3.66
6472 8602 1.450134 GATGTGACGCCAGCCATGA 60.450 57.895 0.00 0.00 0.00 3.07
6474 8604 3.490759 GTGACGCCAGCCATGACG 61.491 66.667 0.00 0.00 0.00 4.35
6475 8605 3.690280 TGACGCCAGCCATGACGA 61.690 61.111 0.00 0.00 0.00 4.20
6479 8609 4.451150 GCCAGCCATGACGACCGA 62.451 66.667 0.00 0.00 0.00 4.69
6480 8610 2.202797 CCAGCCATGACGACCGAG 60.203 66.667 0.00 0.00 0.00 4.63
6481 8611 2.202797 CAGCCATGACGACCGAGG 60.203 66.667 0.00 0.00 0.00 4.63
6482 8612 4.148825 AGCCATGACGACCGAGGC 62.149 66.667 0.00 0.00 45.54 4.70
6484 8614 3.770040 CCATGACGACCGAGGCCA 61.770 66.667 5.01 0.00 0.00 5.36
6485 8615 2.202797 CATGACGACCGAGGCCAG 60.203 66.667 5.01 0.00 0.00 4.85
6486 8616 3.461773 ATGACGACCGAGGCCAGG 61.462 66.667 14.90 14.90 0.00 4.45
6519 8649 1.723870 CGCATAGCAGCTGGTTTCC 59.276 57.895 25.47 5.34 0.00 3.13
6520 8650 0.745845 CGCATAGCAGCTGGTTTCCT 60.746 55.000 25.47 9.94 0.00 3.36
6521 8651 1.020437 GCATAGCAGCTGGTTTCCTC 58.980 55.000 25.47 5.72 0.00 3.71
6522 8652 1.407989 GCATAGCAGCTGGTTTCCTCT 60.408 52.381 25.47 8.39 0.00 3.69
6523 8653 2.943199 GCATAGCAGCTGGTTTCCTCTT 60.943 50.000 25.47 0.00 0.00 2.85
6525 8655 1.613836 AGCAGCTGGTTTCCTCTTTG 58.386 50.000 13.85 0.00 0.00 2.77
6526 8656 0.600057 GCAGCTGGTTTCCTCTTTGG 59.400 55.000 17.12 0.00 37.10 3.28
6527 8657 1.986882 CAGCTGGTTTCCTCTTTGGT 58.013 50.000 5.57 0.00 37.07 3.67
6529 8659 0.315251 GCTGGTTTCCTCTTTGGTGC 59.685 55.000 0.00 0.00 37.07 5.01
6530 8660 1.986882 CTGGTTTCCTCTTTGGTGCT 58.013 50.000 0.00 0.00 37.07 4.40
6532 8662 1.214175 TGGTTTCCTCTTTGGTGCTCA 59.786 47.619 0.00 0.00 37.07 4.26
6533 8663 1.882623 GGTTTCCTCTTTGGTGCTCAG 59.117 52.381 0.00 0.00 37.07 3.35
6534 8664 1.882623 GTTTCCTCTTTGGTGCTCAGG 59.117 52.381 0.00 0.00 37.07 3.86
6535 8665 1.434188 TTCCTCTTTGGTGCTCAGGA 58.566 50.000 0.00 0.00 37.07 3.86
6536 8666 0.979665 TCCTCTTTGGTGCTCAGGAG 59.020 55.000 0.00 0.00 37.07 3.69
6537 8667 0.035630 CCTCTTTGGTGCTCAGGAGG 60.036 60.000 12.76 12.76 39.19 4.30
6538 8668 0.676151 CTCTTTGGTGCTCAGGAGGC 60.676 60.000 0.00 0.00 0.00 4.70
6539 8669 1.073722 CTTTGGTGCTCAGGAGGCA 59.926 57.895 0.00 0.00 37.36 4.75
6541 8671 0.538057 TTTGGTGCTCAGGAGGCAAG 60.538 55.000 0.00 0.00 41.54 4.01
6542 8672 2.749441 GGTGCTCAGGAGGCAAGC 60.749 66.667 0.00 0.00 41.54 4.01
6543 8673 3.123620 GTGCTCAGGAGGCAAGCG 61.124 66.667 0.00 0.00 41.54 4.68
6546 8676 2.818714 CTCAGGAGGCAAGCGCAG 60.819 66.667 11.47 2.01 41.24 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.116827 AGACGTCGGAGATCAACTCT 57.883 50.000 10.46 0.00 44.37 3.24
15 16 6.081049 CACATAGATTTAGACGTCGGAGATC 58.919 44.000 10.46 12.06 40.67 2.75
23 24 2.769663 TGGCCCACATAGATTTAGACGT 59.230 45.455 0.00 0.00 0.00 4.34
26 27 8.859090 CATAAAATTGGCCCACATAGATTTAGA 58.141 33.333 0.00 0.00 0.00 2.10
42 43 3.362295 CGACATCACGCCATAAAATTGG 58.638 45.455 0.00 0.00 39.94 3.16
45 46 2.639065 ACCGACATCACGCCATAAAAT 58.361 42.857 0.00 0.00 0.00 1.82
54 55 0.785378 TAAACGCAACCGACATCACG 59.215 50.000 0.00 0.00 38.29 4.35
78 79 3.935450 TCTTTTTCTTCTTGTCGTTGCG 58.065 40.909 0.00 0.00 0.00 4.85
84 85 5.848559 GCGAGTGAATCTTTTTCTTCTTGTC 59.151 40.000 0.00 0.00 0.00 3.18
346 350 3.570125 GGTTTGGAGTCTTTCTGGAAAGG 59.430 47.826 19.02 5.20 45.80 3.11
352 356 2.417719 CGAGGGTTTGGAGTCTTTCTG 58.582 52.381 0.00 0.00 0.00 3.02
357 361 1.841556 TGCCGAGGGTTTGGAGTCT 60.842 57.895 0.00 0.00 0.00 3.24
360 364 2.359975 GGTGCCGAGGGTTTGGAG 60.360 66.667 0.00 0.00 0.00 3.86
377 425 2.639286 GAACTGTTGCTGCCGTGG 59.361 61.111 0.00 0.00 0.00 4.94
513 618 4.154347 CAGCTGGAGGAGGCGTCC 62.154 72.222 17.88 17.88 44.33 4.79
514 619 4.828925 GCAGCTGGAGGAGGCGTC 62.829 72.222 17.12 0.00 0.00 5.19
516 621 4.527583 GAGCAGCTGGAGGAGGCG 62.528 72.222 17.12 0.00 0.00 5.52
517 622 4.527583 CGAGCAGCTGGAGGAGGC 62.528 72.222 17.12 0.00 0.00 4.70
518 623 3.847602 CCGAGCAGCTGGAGGAGG 61.848 72.222 17.12 0.00 0.00 4.30
526 631 1.893919 GAGGAGGAAACCGAGCAGCT 61.894 60.000 0.00 0.00 34.73 4.24
775 1134 4.504916 CAGCGAGGCGGAGGACAG 62.505 72.222 0.00 0.00 0.00 3.51
797 1156 1.314730 GGTGGAAAAGCAACCGAGAA 58.685 50.000 0.00 0.00 0.00 2.87
884 1398 2.487762 CGCCATAAACTTTCCTGAAGCA 59.512 45.455 0.00 0.00 39.04 3.91
899 1506 3.306088 GGACTAGAATTAGCAGCGCCATA 60.306 47.826 2.29 0.00 0.00 2.74
913 1520 5.733620 AAACAGAACCATACGGACTAGAA 57.266 39.130 0.00 0.00 35.59 2.10
987 1796 2.557059 CTACCATCACGCGCCTGTCA 62.557 60.000 5.73 0.00 0.00 3.58
993 1802 1.299468 CTCCTCTACCATCACGCGC 60.299 63.158 5.73 0.00 0.00 6.86
994 1803 0.738975 TTCTCCTCTACCATCACGCG 59.261 55.000 3.53 3.53 0.00 6.01
1623 2575 1.152030 AGGCAGGTCCAGGTTCTCA 60.152 57.895 0.00 0.00 37.29 3.27
1625 2577 2.900106 GCAGGCAGGTCCAGGTTCT 61.900 63.158 0.00 0.00 37.29 3.01
2105 3134 1.951923 ATCCCATCCATTGCTGGCCA 61.952 55.000 4.71 4.71 42.80 5.36
2188 3217 1.691976 CCCATTAGCATACCCAGACGA 59.308 52.381 0.00 0.00 0.00 4.20
2425 3454 3.011119 GTGGATTAAACACCCGCATACA 58.989 45.455 3.05 0.00 32.80 2.29
2481 3513 4.726416 CAGTGCGCAAAGATGTAAGAAAT 58.274 39.130 14.00 0.00 0.00 2.17
2524 3556 4.910913 ACCCCCATGAAATTTGTTTAGGTT 59.089 37.500 0.00 0.00 0.00 3.50
2652 3693 1.673665 CAGTGCCAGTTGGAGCTCC 60.674 63.158 26.78 26.78 37.39 4.70
2716 3757 1.522580 GAGATCCACCGCTTCTGGC 60.523 63.158 0.00 0.00 37.64 4.85
2753 3794 4.454161 TCATGTCGGTTTGTTGGAATAGTG 59.546 41.667 0.00 0.00 0.00 2.74
2774 3815 6.772233 TGTTTGAATCTTTTCTCCATCAGTCA 59.228 34.615 0.00 0.00 32.78 3.41
2835 3882 3.293337 CATGGCCTCATCTCCAAATTCA 58.707 45.455 3.32 0.00 35.75 2.57
3429 5060 2.154854 TCTTCTGAGTCTGCAAACGG 57.845 50.000 0.00 0.00 0.00 4.44
3591 5222 4.213564 AGTGTTCTCCTTGGCTTCTATG 57.786 45.455 0.00 0.00 0.00 2.23
3675 5406 4.202060 ACAGAGTTCATATGTACTGCCTCG 60.202 45.833 18.52 8.55 29.54 4.63
3756 5487 2.567985 ACAACCTTGGAACAGTTACCG 58.432 47.619 0.00 0.00 42.39 4.02
3836 5567 4.022849 GGTCTCCTTCAACTGTTGGATTTG 60.023 45.833 19.55 8.57 0.00 2.32
3935 5672 4.974645 TGTGGTTGTCTACTTGGAGAAT 57.025 40.909 0.00 0.00 0.00 2.40
4157 5906 3.565902 GCCTTTGCTGGTATCCTGATTAC 59.434 47.826 0.00 0.00 33.53 1.89
4160 5909 1.565759 TGCCTTTGCTGGTATCCTGAT 59.434 47.619 0.00 0.00 38.71 2.90
4181 5939 1.457346 CAGCTTTACCTGCTTCCCAG 58.543 55.000 0.00 0.00 38.92 4.45
4318 6079 5.801350 TTAGAAAGAGCATTGGTGAATCG 57.199 39.130 0.00 0.00 0.00 3.34
4437 6198 4.038642 GGAACAGGCATAAAAGAACAACCA 59.961 41.667 0.00 0.00 0.00 3.67
4761 6641 3.176411 TGGTCCATATCAGGCTATCAGG 58.824 50.000 0.00 0.00 0.00 3.86
4890 6780 2.280628 GATACTGGTACACTGCCAAGC 58.719 52.381 0.00 0.00 35.32 4.01
4903 6793 5.977635 TCATAACTTGGTCAGTGATACTGG 58.022 41.667 8.91 0.00 45.94 4.00
5156 7111 6.096141 TGGACATTTGTTAACAAGAAAGCTCA 59.904 34.615 19.72 11.36 37.15 4.26
5189 7144 4.250464 CAATGCAATGCCTTTCTTCACAT 58.750 39.130 1.53 0.00 0.00 3.21
5191 7146 3.656559 ACAATGCAATGCCTTTCTTCAC 58.343 40.909 1.53 0.00 0.00 3.18
5212 7167 6.539173 TGAAGATTAAGCTGGAGTACCAAAA 58.461 36.000 0.00 0.00 46.32 2.44
5213 7168 6.121776 TGAAGATTAAGCTGGAGTACCAAA 57.878 37.500 0.00 0.00 46.32 3.28
5478 7438 2.472695 AGAAAAGCATGTACGCCTCA 57.527 45.000 0.00 0.00 0.00 3.86
5639 7599 2.215907 TGCAACAAAATTGGACGTGG 57.784 45.000 0.00 0.00 0.00 4.94
5686 7647 1.064505 CAATCTACATGCTGCAACCGG 59.935 52.381 6.36 0.00 0.00 5.28
5913 7878 7.502226 GGAGAATATTACCCATCACAACAATGA 59.498 37.037 0.00 0.00 0.00 2.57
5914 7879 7.285172 TGGAGAATATTACCCATCACAACAATG 59.715 37.037 4.62 0.00 0.00 2.82
6031 7996 2.029918 TGAGACATCCGACACAGACTTG 60.030 50.000 0.00 0.00 0.00 3.16
6043 8008 2.735762 GCCGACACTACTTGAGACATCC 60.736 54.545 0.00 0.00 0.00 3.51
6052 8063 2.751259 TCTCATAACGCCGACACTACTT 59.249 45.455 0.00 0.00 0.00 2.24
6053 8064 2.362736 TCTCATAACGCCGACACTACT 58.637 47.619 0.00 0.00 0.00 2.57
6056 8067 2.165641 TGATTCTCATAACGCCGACACT 59.834 45.455 0.00 0.00 0.00 3.55
6061 8072 1.202533 ACCCTGATTCTCATAACGCCG 60.203 52.381 0.00 0.00 0.00 6.46
6063 8074 4.246458 GGATACCCTGATTCTCATAACGC 58.754 47.826 0.00 0.00 0.00 4.84
6064 8075 5.243954 TCTGGATACCCTGATTCTCATAACG 59.756 44.000 0.00 0.00 35.76 3.18
6065 8076 6.268847 AGTCTGGATACCCTGATTCTCATAAC 59.731 42.308 0.00 0.00 41.54 1.89
6066 8077 6.385443 AGTCTGGATACCCTGATTCTCATAA 58.615 40.000 0.00 0.00 41.54 1.90
6067 8078 5.970289 AGTCTGGATACCCTGATTCTCATA 58.030 41.667 0.00 0.00 41.54 2.15
6068 8079 4.825445 AGTCTGGATACCCTGATTCTCAT 58.175 43.478 0.00 0.00 41.54 2.90
6069 8080 4.271807 AGTCTGGATACCCTGATTCTCA 57.728 45.455 0.00 0.00 41.54 3.27
6070 8081 4.742138 GCAAGTCTGGATACCCTGATTCTC 60.742 50.000 0.00 0.00 41.54 2.87
6071 8082 3.135530 GCAAGTCTGGATACCCTGATTCT 59.864 47.826 0.00 0.00 41.54 2.40
6076 8206 1.134280 CAGGCAAGTCTGGATACCCTG 60.134 57.143 0.00 0.00 33.27 4.45
6084 8214 3.060615 GCAGGCAGGCAAGTCTGG 61.061 66.667 12.46 0.00 41.45 3.86
6106 8236 0.940126 GTTGATAGAGCCACGCCATG 59.060 55.000 0.00 0.00 0.00 3.66
6108 8238 0.323302 TTGTTGATAGAGCCACGCCA 59.677 50.000 0.00 0.00 0.00 5.69
6109 8239 0.727398 GTTGTTGATAGAGCCACGCC 59.273 55.000 0.00 0.00 0.00 5.68
6110 8240 0.727398 GGTTGTTGATAGAGCCACGC 59.273 55.000 0.00 0.00 0.00 5.34
6112 8242 2.290323 ACCAGGTTGTTGATAGAGCCAC 60.290 50.000 0.00 0.00 0.00 5.01
6113 8243 1.985159 ACCAGGTTGTTGATAGAGCCA 59.015 47.619 0.00 0.00 0.00 4.75
6114 8244 2.789409 ACCAGGTTGTTGATAGAGCC 57.211 50.000 0.00 0.00 0.00 4.70
6115 8245 4.130118 CCATACCAGGTTGTTGATAGAGC 58.870 47.826 0.00 0.00 0.00 4.09
6116 8246 4.130118 GCCATACCAGGTTGTTGATAGAG 58.870 47.826 0.00 0.00 0.00 2.43
6117 8247 3.521531 TGCCATACCAGGTTGTTGATAGA 59.478 43.478 0.00 0.00 0.00 1.98
6119 8249 3.009584 TGTGCCATACCAGGTTGTTGATA 59.990 43.478 0.00 0.00 0.00 2.15
6120 8250 2.224992 TGTGCCATACCAGGTTGTTGAT 60.225 45.455 0.00 0.00 0.00 2.57
6122 8252 1.614996 TGTGCCATACCAGGTTGTTG 58.385 50.000 0.00 0.00 0.00 3.33
6123 8253 2.041620 AGATGTGCCATACCAGGTTGTT 59.958 45.455 0.00 0.00 0.00 2.83
6124 8254 1.635487 AGATGTGCCATACCAGGTTGT 59.365 47.619 0.00 0.00 0.00 3.32
6125 8255 2.425143 AGATGTGCCATACCAGGTTG 57.575 50.000 0.00 0.00 0.00 3.77
6126 8256 3.456380 AAAGATGTGCCATACCAGGTT 57.544 42.857 0.00 0.00 0.00 3.50
6127 8257 3.685550 GCTAAAGATGTGCCATACCAGGT 60.686 47.826 0.00 0.00 0.00 4.00
6128 8258 2.880890 GCTAAAGATGTGCCATACCAGG 59.119 50.000 0.00 0.00 0.00 4.45
6129 8259 3.313526 GTGCTAAAGATGTGCCATACCAG 59.686 47.826 0.00 0.00 0.00 4.00
6130 8260 3.278574 GTGCTAAAGATGTGCCATACCA 58.721 45.455 0.00 0.00 0.00 3.25
6131 8261 2.618709 GGTGCTAAAGATGTGCCATACC 59.381 50.000 0.00 0.00 0.00 2.73
6132 8262 3.545703 AGGTGCTAAAGATGTGCCATAC 58.454 45.455 0.00 0.00 0.00 2.39
6133 8263 3.931907 AGGTGCTAAAGATGTGCCATA 57.068 42.857 0.00 0.00 0.00 2.74
6134 8264 2.814805 AGGTGCTAAAGATGTGCCAT 57.185 45.000 0.00 0.00 0.00 4.40
6135 8265 2.224744 TGAAGGTGCTAAAGATGTGCCA 60.225 45.455 0.00 0.00 0.00 4.92
6136 8266 2.436417 TGAAGGTGCTAAAGATGTGCC 58.564 47.619 0.00 0.00 0.00 5.01
6137 8267 3.753272 TCTTGAAGGTGCTAAAGATGTGC 59.247 43.478 0.00 0.00 0.00 4.57
6138 8268 4.756642 TGTCTTGAAGGTGCTAAAGATGTG 59.243 41.667 0.00 0.00 31.73 3.21
6142 8272 5.057149 GTCTTGTCTTGAAGGTGCTAAAGA 58.943 41.667 0.00 0.00 0.00 2.52
6143 8273 4.214332 GGTCTTGTCTTGAAGGTGCTAAAG 59.786 45.833 0.00 0.00 0.00 1.85
6146 8276 2.038557 GGGTCTTGTCTTGAAGGTGCTA 59.961 50.000 0.00 0.00 0.00 3.49
6147 8277 1.202818 GGGTCTTGTCTTGAAGGTGCT 60.203 52.381 0.00 0.00 0.00 4.40
6148 8278 1.202818 AGGGTCTTGTCTTGAAGGTGC 60.203 52.381 0.00 0.00 0.00 5.01
6149 8279 2.104792 TGAGGGTCTTGTCTTGAAGGTG 59.895 50.000 0.00 0.00 0.00 4.00
6150 8280 2.408565 TGAGGGTCTTGTCTTGAAGGT 58.591 47.619 0.00 0.00 0.00 3.50
6151 8281 3.008375 TCATGAGGGTCTTGTCTTGAAGG 59.992 47.826 0.00 0.00 0.00 3.46
6152 8282 4.252073 CTCATGAGGGTCTTGTCTTGAAG 58.748 47.826 15.38 0.00 0.00 3.02
6153 8283 3.008375 CCTCATGAGGGTCTTGTCTTGAA 59.992 47.826 31.14 0.00 44.87 2.69
6154 8284 2.568956 CCTCATGAGGGTCTTGTCTTGA 59.431 50.000 31.14 0.00 44.87 3.02
6155 8285 2.983229 CCTCATGAGGGTCTTGTCTTG 58.017 52.381 31.14 3.46 44.87 3.02
6167 8297 4.559063 CGCCTGGCCCCTCATGAG 62.559 72.222 16.24 16.24 0.00 2.90
6169 8299 4.864334 GACGCCTGGCCCCTCATG 62.864 72.222 14.12 0.00 0.00 3.07
6183 8313 3.103911 GTTGTCCGCCTCGTGACG 61.104 66.667 0.00 0.00 32.65 4.35
6184 8314 2.028484 TGTTGTCCGCCTCGTGAC 59.972 61.111 0.00 0.00 0.00 3.67
6185 8315 2.028484 GTGTTGTCCGCCTCGTGA 59.972 61.111 0.00 0.00 0.00 4.35
6187 8317 2.989055 CTTGGTGTTGTCCGCCTCGT 62.989 60.000 0.00 0.00 44.58 4.18
6188 8318 2.280524 TTGGTGTTGTCCGCCTCG 60.281 61.111 0.00 0.00 44.58 4.63
6189 8319 1.070786 TCTTGGTGTTGTCCGCCTC 59.929 57.895 0.00 0.00 44.58 4.70
6190 8320 1.227853 GTCTTGGTGTTGTCCGCCT 60.228 57.895 0.00 0.00 44.58 5.52
6191 8321 2.258726 GGTCTTGGTGTTGTCCGCC 61.259 63.158 0.00 0.00 44.53 6.13
6192 8322 1.227853 AGGTCTTGGTGTTGTCCGC 60.228 57.895 0.00 0.00 0.00 5.54
6193 8323 0.602905 GGAGGTCTTGGTGTTGTCCG 60.603 60.000 0.00 0.00 0.00 4.79
6194 8324 0.602905 CGGAGGTCTTGGTGTTGTCC 60.603 60.000 0.00 0.00 0.00 4.02
6195 8325 0.391597 TCGGAGGTCTTGGTGTTGTC 59.608 55.000 0.00 0.00 0.00 3.18
6196 8326 1.056660 ATCGGAGGTCTTGGTGTTGT 58.943 50.000 0.00 0.00 0.00 3.32
6197 8327 1.270839 ACATCGGAGGTCTTGGTGTTG 60.271 52.381 0.00 0.00 0.00 3.33
6199 8329 0.608640 GACATCGGAGGTCTTGGTGT 59.391 55.000 15.01 0.00 32.54 4.16
6200 8330 0.898320 AGACATCGGAGGTCTTGGTG 59.102 55.000 18.73 0.00 42.77 4.17
6201 8331 1.187087 GAGACATCGGAGGTCTTGGT 58.813 55.000 24.20 4.45 45.21 3.67
6203 8333 2.232452 ACTTGAGACATCGGAGGTCTTG 59.768 50.000 24.20 18.72 45.21 3.02
6206 8336 3.018149 ACTACTTGAGACATCGGAGGTC 58.982 50.000 14.51 14.51 35.50 3.85
6207 8337 2.755655 CACTACTTGAGACATCGGAGGT 59.244 50.000 0.00 0.00 0.00 3.85
6209 8339 3.486043 CGACACTACTTGAGACATCGGAG 60.486 52.174 0.00 0.00 0.00 4.63
6212 8342 2.786854 CCGACACTACTTGAGACATCG 58.213 52.381 0.00 0.00 0.00 3.84
6213 8343 2.531206 GCCGACACTACTTGAGACATC 58.469 52.381 0.00 0.00 0.00 3.06
6217 8347 0.956633 AACGCCGACACTACTTGAGA 59.043 50.000 0.00 0.00 0.00 3.27
6219 8349 0.956633 AGAACGCCGACACTACTTGA 59.043 50.000 0.00 0.00 0.00 3.02
6221 8351 0.956633 TCAGAACGCCGACACTACTT 59.043 50.000 0.00 0.00 0.00 2.24
6222 8352 0.522180 CTCAGAACGCCGACACTACT 59.478 55.000 0.00 0.00 0.00 2.57
6224 8354 1.241165 TTCTCAGAACGCCGACACTA 58.759 50.000 0.00 0.00 0.00 2.74
6225 8355 0.603569 ATTCTCAGAACGCCGACACT 59.396 50.000 0.00 0.00 0.00 3.55
6226 8356 0.992802 GATTCTCAGAACGCCGACAC 59.007 55.000 0.00 0.00 0.00 3.67
6227 8357 0.601057 TGATTCTCAGAACGCCGACA 59.399 50.000 0.00 0.00 0.00 4.35
6228 8358 3.418675 TGATTCTCAGAACGCCGAC 57.581 52.632 0.00 0.00 0.00 4.79
6249 8379 1.377333 GGCAGGCAAGTCTGGGTAC 60.377 63.158 3.62 0.00 35.43 3.34
6251 8381 2.856000 AGGCAGGCAAGTCTGGGT 60.856 61.111 3.62 0.00 35.43 4.51
6253 8383 3.060615 GCAGGCAGGCAAGTCTGG 61.061 66.667 12.46 0.00 41.45 3.86
6276 8406 0.541392 TGTTGATAGAGCCACGCCAT 59.459 50.000 0.00 0.00 0.00 4.40
6277 8407 0.108186 CTGTTGATAGAGCCACGCCA 60.108 55.000 0.00 0.00 0.00 5.69
6278 8408 1.432270 GCTGTTGATAGAGCCACGCC 61.432 60.000 0.00 0.00 34.73 5.68
6279 8409 2.009888 GCTGTTGATAGAGCCACGC 58.990 57.895 0.00 0.00 34.73 5.34
6285 8415 2.223829 CCGTACCAGGCTGTTGATAGAG 60.224 54.545 14.43 0.00 0.00 2.43
6287 8417 2.225068 CCGTACCAGGCTGTTGATAG 57.775 55.000 14.43 0.00 0.00 2.08
6297 8427 0.249120 TGAAGATGTGCCGTACCAGG 59.751 55.000 0.00 0.00 0.00 4.45
6299 8429 0.391130 GCTGAAGATGTGCCGTACCA 60.391 55.000 0.00 0.00 0.00 3.25
6300 8430 0.391130 TGCTGAAGATGTGCCGTACC 60.391 55.000 0.00 0.00 0.00 3.34
6303 8433 1.672356 GGTGCTGAAGATGTGCCGT 60.672 57.895 0.00 0.00 0.00 5.68
6305 8435 0.807496 GAAGGTGCTGAAGATGTGCC 59.193 55.000 0.00 0.00 0.00 5.01
6306 8436 1.527034 TGAAGGTGCTGAAGATGTGC 58.473 50.000 0.00 0.00 0.00 4.57
6307 8437 3.188048 GTCTTGAAGGTGCTGAAGATGTG 59.812 47.826 0.00 0.00 0.00 3.21
6308 8438 3.181451 TGTCTTGAAGGTGCTGAAGATGT 60.181 43.478 0.00 0.00 0.00 3.06
6310 8440 3.777106 TGTCTTGAAGGTGCTGAAGAT 57.223 42.857 0.00 0.00 0.00 2.40
6313 8443 3.206150 GTCTTGTCTTGAAGGTGCTGAA 58.794 45.455 0.00 0.00 0.00 3.02
6314 8444 2.485479 GGTCTTGTCTTGAAGGTGCTGA 60.485 50.000 0.00 0.00 0.00 4.26
6315 8445 1.876156 GGTCTTGTCTTGAAGGTGCTG 59.124 52.381 0.00 0.00 0.00 4.41
6317 8447 1.202818 AGGGTCTTGTCTTGAAGGTGC 60.203 52.381 0.00 0.00 0.00 5.01
6318 8448 2.772287 GAGGGTCTTGTCTTGAAGGTG 58.228 52.381 0.00 0.00 0.00 4.00
6319 8449 1.344763 CGAGGGTCTTGTCTTGAAGGT 59.655 52.381 0.00 0.00 0.00 3.50
6320 8450 1.344763 ACGAGGGTCTTGTCTTGAAGG 59.655 52.381 0.00 0.00 0.00 3.46
6321 8451 2.035961 TCACGAGGGTCTTGTCTTGAAG 59.964 50.000 0.00 0.00 0.00 3.02
6322 8452 2.035961 CTCACGAGGGTCTTGTCTTGAA 59.964 50.000 0.00 0.00 0.00 2.69
6323 8453 1.613925 CTCACGAGGGTCTTGTCTTGA 59.386 52.381 0.00 0.00 0.00 3.02
6324 8454 1.337260 CCTCACGAGGGTCTTGTCTTG 60.337 57.143 5.08 0.00 44.87 3.02
6326 8456 2.659800 CCTCACGAGGGTCTTGTCT 58.340 57.895 5.08 0.00 44.87 3.41
6357 8487 4.351938 TTGGTGTCGTCCGCCTCG 62.352 66.667 8.49 0.00 44.58 4.63
6358 8488 2.432628 CTTGGTGTCGTCCGCCTC 60.433 66.667 8.49 0.00 44.58 4.70
6359 8489 2.915659 TCTTGGTGTCGTCCGCCT 60.916 61.111 8.49 0.00 44.58 5.52
6360 8490 2.737376 GTCTTGGTGTCGTCCGCC 60.737 66.667 1.25 1.25 44.53 6.13
6361 8491 2.737376 GGTCTTGGTGTCGTCCGC 60.737 66.667 0.00 0.00 0.00 5.54
6362 8492 1.080705 GAGGTCTTGGTGTCGTCCG 60.081 63.158 0.00 0.00 0.00 4.79
6364 8494 1.080705 CGGAGGTCTTGGTGTCGTC 60.081 63.158 0.00 0.00 0.00 4.20
6365 8495 1.111116 TTCGGAGGTCTTGGTGTCGT 61.111 55.000 0.00 0.00 0.00 4.34
6366 8496 0.388649 CTTCGGAGGTCTTGGTGTCG 60.389 60.000 0.00 0.00 0.00 4.35
6367 8497 0.037232 CCTTCGGAGGTCTTGGTGTC 60.037 60.000 0.00 0.00 38.32 3.67
6368 8498 0.471211 TCCTTCGGAGGTCTTGGTGT 60.471 55.000 10.32 0.00 43.97 4.16
6369 8499 0.685097 TTCCTTCGGAGGTCTTGGTG 59.315 55.000 10.32 0.00 43.97 4.17
6370 8500 1.071857 GTTTCCTTCGGAGGTCTTGGT 59.928 52.381 10.32 0.00 43.97 3.67
6372 8502 1.429463 CGTTTCCTTCGGAGGTCTTG 58.571 55.000 10.32 0.00 43.97 3.02
6382 8512 2.675423 GGGGTGGCCGTTTCCTTC 60.675 66.667 0.00 0.00 0.00 3.46
6383 8513 3.503839 TGGGGTGGCCGTTTCCTT 61.504 61.111 0.00 0.00 0.00 3.36
6384 8514 3.966543 CTGGGGTGGCCGTTTCCT 61.967 66.667 0.00 0.00 0.00 3.36
6393 8523 2.352805 GAAGTCAGCCTGGGGTGG 59.647 66.667 17.21 1.37 43.10 4.61
6395 8525 3.322466 CGGAAGTCAGCCTGGGGT 61.322 66.667 0.00 0.00 0.00 4.95
6396 8526 3.003173 TCGGAAGTCAGCCTGGGG 61.003 66.667 0.00 0.00 0.00 4.96
6397 8527 2.581354 CTCGGAAGTCAGCCTGGG 59.419 66.667 0.00 0.00 0.00 4.45
6398 8528 1.954362 CTCCTCGGAAGTCAGCCTGG 61.954 65.000 0.00 0.00 0.00 4.45
6399 8529 1.515020 CTCCTCGGAAGTCAGCCTG 59.485 63.158 0.00 0.00 0.00 4.85
6401 8531 2.185608 GCTCCTCGGAAGTCAGCC 59.814 66.667 0.00 0.00 0.00 4.85
6402 8532 2.202676 CGCTCCTCGGAAGTCAGC 60.203 66.667 0.00 0.00 33.78 4.26
6411 8541 2.924454 GCATAGAAATCTCCGCTCCTCG 60.924 54.545 0.00 0.00 38.08 4.63
6413 8543 2.036992 CTGCATAGAAATCTCCGCTCCT 59.963 50.000 0.00 0.00 0.00 3.69
6414 8544 2.411904 CTGCATAGAAATCTCCGCTCC 58.588 52.381 0.00 0.00 0.00 4.70
6415 8545 2.411904 CCTGCATAGAAATCTCCGCTC 58.588 52.381 0.00 0.00 0.00 5.03
6416 8546 1.542108 GCCTGCATAGAAATCTCCGCT 60.542 52.381 0.00 0.00 0.00 5.52
6417 8547 0.871057 GCCTGCATAGAAATCTCCGC 59.129 55.000 0.00 0.00 0.00 5.54
6418 8548 1.143305 CGCCTGCATAGAAATCTCCG 58.857 55.000 0.00 0.00 0.00 4.63
6419 8549 0.871057 GCGCCTGCATAGAAATCTCC 59.129 55.000 0.00 0.00 42.15 3.71
6420 8550 0.871057 GGCGCCTGCATAGAAATCTC 59.129 55.000 22.15 0.00 45.35 2.75
6422 8552 1.801178 GTAGGCGCCTGCATAGAAATC 59.199 52.381 38.98 11.38 45.35 2.17
6424 8554 0.179056 GGTAGGCGCCTGCATAGAAA 60.179 55.000 39.55 16.90 45.35 2.52
6425 8555 1.048724 AGGTAGGCGCCTGCATAGAA 61.049 55.000 39.55 17.69 45.35 2.10
6426 8556 1.457643 AGGTAGGCGCCTGCATAGA 60.458 57.895 39.55 18.48 45.35 1.98
6427 8557 1.005630 GAGGTAGGCGCCTGCATAG 60.006 63.158 39.55 0.00 45.35 2.23
6428 8558 2.856628 CGAGGTAGGCGCCTGCATA 61.857 63.158 39.55 19.67 45.35 3.14
6429 8559 4.227134 CGAGGTAGGCGCCTGCAT 62.227 66.667 39.55 36.02 45.35 3.96
6432 8562 3.417275 CTCACGAGGTAGGCGCCTG 62.417 68.421 38.98 23.72 39.34 4.85
6433 8563 3.141488 CTCACGAGGTAGGCGCCT 61.141 66.667 34.85 34.85 42.53 5.52
6434 8564 4.208686 CCTCACGAGGTAGGCGCC 62.209 72.222 21.89 21.89 43.61 6.53
6443 8573 1.340658 CGTCACATCAACCTCACGAG 58.659 55.000 0.00 0.00 0.00 4.18
6444 8574 0.666274 GCGTCACATCAACCTCACGA 60.666 55.000 0.00 0.00 0.00 4.35
6445 8575 1.626654 GGCGTCACATCAACCTCACG 61.627 60.000 0.00 0.00 0.00 4.35
6446 8576 0.602638 TGGCGTCACATCAACCTCAC 60.603 55.000 0.00 0.00 0.00 3.51
6448 8578 1.639298 GCTGGCGTCACATCAACCTC 61.639 60.000 0.00 0.00 0.00 3.85
6449 8579 1.672356 GCTGGCGTCACATCAACCT 60.672 57.895 0.00 0.00 0.00 3.50
6450 8580 2.690778 GGCTGGCGTCACATCAACC 61.691 63.158 0.00 0.00 0.00 3.77
6451 8581 1.308069 ATGGCTGGCGTCACATCAAC 61.308 55.000 0.00 0.00 0.00 3.18
6452 8582 1.002257 ATGGCTGGCGTCACATCAA 60.002 52.632 0.00 0.00 0.00 2.57
6455 8585 1.746615 GTCATGGCTGGCGTCACAT 60.747 57.895 0.00 0.00 0.00 3.21
6456 8586 2.358615 GTCATGGCTGGCGTCACA 60.359 61.111 0.00 0.00 0.00 3.58
6457 8587 3.490759 CGTCATGGCTGGCGTCAC 61.491 66.667 0.00 0.00 45.28 3.67
6463 8593 2.202797 CTCGGTCGTCATGGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
6464 8594 2.202797 CCTCGGTCGTCATGGCTG 60.203 66.667 0.00 0.00 0.00 4.85
6468 8598 2.202797 CTGGCCTCGGTCGTCATG 60.203 66.667 3.32 0.00 0.00 3.07
6499 8629 2.328339 GAAACCAGCTGCTATGCGCC 62.328 60.000 8.66 0.00 38.05 6.53
6501 8631 0.745845 AGGAAACCAGCTGCTATGCG 60.746 55.000 8.66 0.00 38.13 4.73
6502 8632 1.020437 GAGGAAACCAGCTGCTATGC 58.980 55.000 8.66 0.98 0.00 3.14
6503 8633 2.706339 AGAGGAAACCAGCTGCTATG 57.294 50.000 8.66 0.00 0.00 2.23
6504 8634 3.350833 CAAAGAGGAAACCAGCTGCTAT 58.649 45.455 8.66 0.00 0.00 2.97
6506 8636 1.613836 CAAAGAGGAAACCAGCTGCT 58.386 50.000 8.66 0.00 0.00 4.24
6507 8637 0.600057 CCAAAGAGGAAACCAGCTGC 59.400 55.000 8.66 0.00 41.22 5.25
6508 8638 1.610522 CACCAAAGAGGAAACCAGCTG 59.389 52.381 6.78 6.78 41.22 4.24
6511 8641 1.882623 GAGCACCAAAGAGGAAACCAG 59.117 52.381 0.00 0.00 41.22 4.00
6513 8643 1.882623 CTGAGCACCAAAGAGGAAACC 59.117 52.381 0.00 0.00 41.22 3.27
6514 8644 1.882623 CCTGAGCACCAAAGAGGAAAC 59.117 52.381 0.00 0.00 41.22 2.78
6515 8645 1.774254 TCCTGAGCACCAAAGAGGAAA 59.226 47.619 0.00 0.00 41.22 3.13
6516 8646 1.349026 CTCCTGAGCACCAAAGAGGAA 59.651 52.381 0.00 0.00 41.22 3.36
6517 8647 0.979665 CTCCTGAGCACCAAAGAGGA 59.020 55.000 0.00 0.00 41.22 3.71
6519 8649 0.676151 GCCTCCTGAGCACCAAAGAG 60.676 60.000 0.00 0.00 0.00 2.85
6520 8650 1.376466 GCCTCCTGAGCACCAAAGA 59.624 57.895 0.00 0.00 0.00 2.52
6521 8651 0.538057 TTGCCTCCTGAGCACCAAAG 60.538 55.000 0.00 0.00 40.69 2.77
6522 8652 0.538057 CTTGCCTCCTGAGCACCAAA 60.538 55.000 0.00 0.00 40.69 3.28
6523 8653 1.073722 CTTGCCTCCTGAGCACCAA 59.926 57.895 0.00 0.00 40.69 3.67
6525 8655 2.749441 GCTTGCCTCCTGAGCACC 60.749 66.667 0.00 0.00 40.69 5.01
6526 8656 3.123620 CGCTTGCCTCCTGAGCAC 61.124 66.667 0.00 0.00 40.69 4.40
6529 8659 2.818714 CTGCGCTTGCCTCCTGAG 60.819 66.667 9.73 0.00 38.03 3.35
6530 8660 3.313524 TCTGCGCTTGCCTCCTGA 61.314 61.111 9.73 0.00 38.03 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.