Multiple sequence alignment - TraesCS7A01G257200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G257200 chr7A 100.000 4375 0 0 1 4375 246604091 246599717 0.000000e+00 8080.0
1 TraesCS7A01G257200 chr7A 87.580 314 27 6 3967 4269 635370828 635370516 1.940000e-93 353.0
2 TraesCS7A01G257200 chr7A 87.171 304 30 4 3965 4260 231711210 231710908 1.950000e-88 337.0
3 TraesCS7A01G257200 chr7D 90.754 3699 185 63 361 3967 233870705 233867072 0.000000e+00 4791.0
4 TraesCS7A01G257200 chr7D 94.779 249 8 4 1 247 233870998 233870753 2.470000e-102 383.0
5 TraesCS7A01G257200 chr7D 89.109 303 24 5 3964 4258 32815807 32816108 6.910000e-98 368.0
6 TraesCS7A01G257200 chr7D 94.783 115 6 0 4261 4375 233867073 233866959 3.480000e-41 180.0
7 TraesCS7A01G257200 chr7B 92.990 1769 84 19 537 2290 205355195 205353452 0.000000e+00 2543.0
8 TraesCS7A01G257200 chr7B 93.591 1607 69 14 2365 3967 205353102 205351526 0.000000e+00 2366.0
9 TraesCS7A01G257200 chr7B 91.809 293 14 6 1 286 205363157 205362868 2.450000e-107 399.0
10 TraesCS7A01G257200 chr7B 94.891 137 4 3 235 369 205362884 205362749 1.230000e-50 211.0
11 TraesCS7A01G257200 chr7B 85.849 106 4 6 447 544 205355523 205355421 7.740000e-18 102.0
12 TraesCS7A01G257200 chr7B 94.828 58 3 0 2310 2367 205353179 205353122 1.680000e-14 91.6
13 TraesCS7A01G257200 chr7B 97.436 39 1 0 373 411 205362707 205362669 2.820000e-07 67.6
14 TraesCS7A01G257200 chr5A 94.304 316 8 4 3964 4269 126694884 126694569 3.960000e-130 475.0
15 TraesCS7A01G257200 chr5A 93.930 313 8 5 3959 4260 643331122 643331434 3.080000e-126 462.0
16 TraesCS7A01G257200 chr2A 95.050 303 6 3 3967 4260 92423264 92423566 6.630000e-128 468.0
17 TraesCS7A01G257200 chr4B 94.737 304 6 4 3967 4260 433962045 433962348 8.570000e-127 464.0
18 TraesCS7A01G257200 chr4A 94.444 306 8 3 3964 4260 538933079 538932774 3.080000e-126 462.0
19 TraesCS7A01G257200 chr3A 88.852 305 25 3 3965 4260 150729721 150729417 2.490000e-97 366.0
20 TraesCS7A01G257200 chr3A 87.419 310 29 4 3961 4260 11566887 11566578 9.010000e-92 348.0
21 TraesCS7A01G257200 chr3A 87.213 305 30 4 3965 4260 182235531 182235835 5.420000e-89 339.0
22 TraesCS7A01G257200 chr6D 87.255 306 28 6 3964 4260 390006609 390006306 5.420000e-89 339.0
23 TraesCS7A01G257200 chr1A 87.171 304 31 3 3965 4260 529065366 529065669 5.420000e-89 339.0
24 TraesCS7A01G257200 chr1B 83.761 234 23 7 317 535 569523205 569522972 1.590000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G257200 chr7A 246599717 246604091 4374 True 8080.000000 8080 100.000000 1 4375 1 chr7A.!!$R2 4374
1 TraesCS7A01G257200 chr7D 233866959 233870998 4039 True 1784.666667 4791 93.438667 1 4375 3 chr7D.!!$R1 4374
2 TraesCS7A01G257200 chr7B 205351526 205355523 3997 True 1275.650000 2543 91.814500 447 3967 4 chr7B.!!$R1 3520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
730 984 0.038343 CAAGGCAACCAAACCATCCG 60.038 55.0 0.00 0.0 37.17 4.18 F
1134 1428 0.175760 TCGCAAGAGATACCAGGTGC 59.824 55.0 0.76 0.0 45.01 5.01 F
2358 2953 0.106894 CTCTTAATCCCGAGGTGCCC 59.893 60.0 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2411 0.461163 TAACATGTGCGGGGACATCG 60.461 55.000 0.00 2.76 34.18 3.84 R
2924 3541 1.067250 GACCGGAGCAGAGCAGATC 59.933 63.158 9.46 0.00 0.00 2.75 R
4138 4758 0.037046 GTGGCATGGGGAAAGCAAAG 60.037 55.000 0.00 0.00 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.720601 TGATGCCAAGGCCGAGCT 61.721 61.111 8.89 0.00 41.09 4.09
105 106 6.183360 TGCCAAGGATTTTTCAATAGATCGAC 60.183 38.462 0.00 0.00 0.00 4.20
158 159 1.356624 GGCACACATATTGGCGAGC 59.643 57.895 0.00 0.00 0.00 5.03
190 192 0.110486 ACGGTCCTGTTTTCCAGCAT 59.890 50.000 0.00 0.00 40.06 3.79
199 201 4.309933 CTGTTTTCCAGCATTTTTCTCCC 58.690 43.478 0.00 0.00 33.59 4.30
226 228 1.000394 CCCCATGGTTTCCGTGTTTTC 60.000 52.381 11.73 0.00 38.76 2.29
229 231 3.057806 CCCATGGTTTCCGTGTTTTCTAC 60.058 47.826 11.73 0.00 38.76 2.59
230 232 3.818773 CCATGGTTTCCGTGTTTTCTACT 59.181 43.478 2.57 0.00 38.76 2.57
231 233 4.998672 CCATGGTTTCCGTGTTTTCTACTA 59.001 41.667 2.57 0.00 38.76 1.82
232 234 5.121768 CCATGGTTTCCGTGTTTTCTACTAG 59.878 44.000 2.57 0.00 38.76 2.57
233 235 5.534207 TGGTTTCCGTGTTTTCTACTAGA 57.466 39.130 0.00 0.00 0.00 2.43
234 236 6.105397 TGGTTTCCGTGTTTTCTACTAGAT 57.895 37.500 0.00 0.00 0.00 1.98
235 237 5.929992 TGGTTTCCGTGTTTTCTACTAGATG 59.070 40.000 0.00 0.00 0.00 2.90
236 238 6.161381 GGTTTCCGTGTTTTCTACTAGATGA 58.839 40.000 0.00 0.00 0.00 2.92
237 239 6.090493 GGTTTCCGTGTTTTCTACTAGATGAC 59.910 42.308 0.00 0.00 0.00 3.06
238 240 6.585695 TTCCGTGTTTTCTACTAGATGACT 57.414 37.500 0.00 0.00 0.00 3.41
239 241 6.192234 TCCGTGTTTTCTACTAGATGACTC 57.808 41.667 0.00 0.00 0.00 3.36
240 242 5.708697 TCCGTGTTTTCTACTAGATGACTCA 59.291 40.000 0.00 0.00 0.00 3.41
241 243 6.377429 TCCGTGTTTTCTACTAGATGACTCAT 59.623 38.462 0.00 0.00 0.00 2.90
242 244 7.036220 CCGTGTTTTCTACTAGATGACTCATT 58.964 38.462 0.00 0.00 0.00 2.57
243 245 7.009631 CCGTGTTTTCTACTAGATGACTCATTG 59.990 40.741 0.00 0.00 0.00 2.82
244 246 7.542477 CGTGTTTTCTACTAGATGACTCATTGT 59.458 37.037 0.00 0.00 0.00 2.71
245 247 9.209175 GTGTTTTCTACTAGATGACTCATTGTT 57.791 33.333 0.00 0.00 0.00 2.83
246 248 9.778741 TGTTTTCTACTAGATGACTCATTGTTT 57.221 29.630 0.00 0.00 0.00 2.83
283 285 2.171659 TGCAGGGTGACTCAGTTGTTTA 59.828 45.455 0.00 0.00 0.00 2.01
285 287 3.821033 GCAGGGTGACTCAGTTGTTTATT 59.179 43.478 0.00 0.00 0.00 1.40
304 306 7.923878 TGTTTATTGAGCAAGCAGTATACGATA 59.076 33.333 0.00 0.00 0.00 2.92
305 307 7.869016 TTATTGAGCAAGCAGTATACGATAC 57.131 36.000 0.00 0.00 0.00 2.24
306 308 3.885358 TGAGCAAGCAGTATACGATACG 58.115 45.455 0.00 0.00 0.00 3.06
307 309 3.562557 TGAGCAAGCAGTATACGATACGA 59.437 43.478 0.00 0.00 0.00 3.43
309 311 4.724303 AGCAAGCAGTATACGATACGATC 58.276 43.478 0.00 0.00 0.00 3.69
310 312 4.215613 AGCAAGCAGTATACGATACGATCA 59.784 41.667 0.00 0.00 0.00 2.92
311 313 4.915667 GCAAGCAGTATACGATACGATCAA 59.084 41.667 0.00 0.00 0.00 2.57
316 318 7.145985 AGCAGTATACGATACGATCAATTTGT 58.854 34.615 0.00 0.00 0.00 2.83
317 319 7.652105 AGCAGTATACGATACGATCAATTTGTT 59.348 33.333 0.00 0.00 0.00 2.83
318 320 8.273557 GCAGTATACGATACGATCAATTTGTTT 58.726 33.333 0.00 0.00 0.00 2.83
331 333 5.379003 TCAATTTGTTTTGATCGTCTACGC 58.621 37.500 0.00 0.00 33.48 4.42
332 334 3.799137 TTTGTTTTGATCGTCTACGCC 57.201 42.857 0.00 0.00 39.60 5.68
333 335 1.342555 TGTTTTGATCGTCTACGCCG 58.657 50.000 0.00 0.00 39.60 6.46
334 336 0.643820 GTTTTGATCGTCTACGCCGG 59.356 55.000 0.00 0.00 39.60 6.13
335 337 0.527113 TTTTGATCGTCTACGCCGGA 59.473 50.000 5.05 0.00 39.60 5.14
336 338 0.099968 TTTGATCGTCTACGCCGGAG 59.900 55.000 5.05 3.72 39.60 4.63
337 339 2.051166 GATCGTCTACGCCGGAGC 60.051 66.667 5.05 0.00 39.60 4.70
350 352 4.008933 GGAGCGTCTGCCCACTGT 62.009 66.667 0.00 0.00 44.31 3.55
351 353 2.031163 GAGCGTCTGCCCACTGTT 59.969 61.111 0.00 0.00 44.31 3.16
352 354 2.029844 GAGCGTCTGCCCACTGTTC 61.030 63.158 0.00 0.00 44.31 3.18
353 355 2.280797 GCGTCTGCCCACTGTTCA 60.281 61.111 0.00 0.00 33.98 3.18
354 356 1.891919 GCGTCTGCCCACTGTTCAA 60.892 57.895 0.00 0.00 33.98 2.69
355 357 1.444119 GCGTCTGCCCACTGTTCAAA 61.444 55.000 0.00 0.00 33.98 2.69
356 358 1.021202 CGTCTGCCCACTGTTCAAAA 58.979 50.000 0.00 0.00 0.00 2.44
359 361 2.687935 GTCTGCCCACTGTTCAAAAGAA 59.312 45.455 0.00 0.00 0.00 2.52
369 371 7.202526 CCACTGTTCAAAAGAAGAATTTGCTA 58.797 34.615 0.00 0.00 37.62 3.49
379 381 7.472334 AAGAAGAATTTGCTACACCATGATT 57.528 32.000 0.00 0.00 0.00 2.57
390 392 2.225491 ACACCATGATTTGTGCACGTAC 59.775 45.455 13.13 4.36 35.90 3.67
392 394 1.523501 CATGATTTGTGCACGTACGC 58.476 50.000 16.72 0.00 0.00 4.42
393 395 1.136113 CATGATTTGTGCACGTACGCA 60.136 47.619 16.72 2.78 40.32 5.24
405 407 1.790623 ACGTACGCAGTTGATTGTGTC 59.209 47.619 16.72 0.00 37.78 3.67
419 421 2.827800 TGTGTCAAGGCTTCTCTCTG 57.172 50.000 0.00 0.00 0.00 3.35
436 438 6.899089 TCTCTCTGCCATTAATTACATTGGA 58.101 36.000 10.91 0.00 0.00 3.53
445 447 9.260002 GCCATTAATTACATTGGAAAATACCAG 57.740 33.333 10.91 0.00 41.19 4.00
495 503 2.895372 CGTAGCCGCCATTGTCCC 60.895 66.667 0.00 0.00 0.00 4.46
500 514 2.202932 CCGCCATTGTCCCTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
730 984 0.038343 CAAGGCAACCAAACCATCCG 60.038 55.000 0.00 0.00 37.17 4.18
865 1119 1.144057 CGCATATATCCCCCTCGCC 59.856 63.158 0.00 0.00 0.00 5.54
927 1181 0.809385 TTCGACCAACTCGCCTCTAG 59.191 55.000 0.00 0.00 42.62 2.43
938 1192 0.179124 CGCCTCTAGAACACAGAGCC 60.179 60.000 0.00 0.00 38.58 4.70
966 1224 0.398318 CCCGGATCCCTTCTTCATCC 59.602 60.000 0.73 0.00 33.85 3.51
983 1241 2.294078 CCCCCTCTCCGCTCTTTGT 61.294 63.158 0.00 0.00 0.00 2.83
1032 1290 2.683768 TCCTTTCCTCTCCATAGCTCC 58.316 52.381 0.00 0.00 0.00 4.70
1050 1308 0.528684 CCTCCGAGCCTTGATTCGAC 60.529 60.000 0.00 0.00 39.06 4.20
1051 1309 0.867753 CTCCGAGCCTTGATTCGACG 60.868 60.000 0.00 0.00 39.06 5.12
1106 1400 3.381908 TGCAAACGGTGTCTTGGTTTTAT 59.618 39.130 0.00 0.00 31.95 1.40
1114 1408 6.086222 CGGTGTCTTGGTTTTATCTTGATTG 58.914 40.000 0.00 0.00 0.00 2.67
1115 1409 6.293955 CGGTGTCTTGGTTTTATCTTGATTGT 60.294 38.462 0.00 0.00 0.00 2.71
1121 1415 5.698832 TGGTTTTATCTTGATTGTCGCAAG 58.301 37.500 0.00 0.00 43.09 4.01
1134 1428 0.175760 TCGCAAGAGATACCAGGTGC 59.824 55.000 0.76 0.00 45.01 5.01
1152 1446 2.985139 GTGCAGTAGTTTCTCGTGGTAC 59.015 50.000 0.00 0.00 0.00 3.34
1278 1572 9.851686 AAATTTAGCTGGTACTATCATTCATGA 57.148 29.630 0.00 0.00 41.70 3.07
1302 1597 8.082242 TGAGCTTAATCAGGCTAAAAGTTTTTC 58.918 33.333 6.10 0.00 39.05 2.29
1334 1630 0.329596 ATCCAGAGCCAACCTGTTCC 59.670 55.000 0.00 0.00 0.00 3.62
1362 1658 2.070783 CTGCACCATTTGAATTGCACC 58.929 47.619 0.00 0.00 40.01 5.01
1424 1720 4.285851 GCAGAGCTAGTTTGCGGT 57.714 55.556 0.00 0.00 38.13 5.68
1437 1733 3.105937 GTTTGCGGTGACAAAAGTCTTC 58.894 45.455 0.00 0.00 40.99 2.87
1488 1785 6.634805 TCCACTTAAGATCTGTCATCTCAAC 58.365 40.000 10.09 0.00 0.00 3.18
1492 1789 7.704472 CACTTAAGATCTGTCATCTCAACCTAC 59.296 40.741 10.09 0.00 0.00 3.18
1525 1824 3.440173 TCTTCATTTTGCGGGTGAATCTC 59.560 43.478 0.00 0.00 32.05 2.75
1606 1905 9.515226 AGGTTAACTCTTAGTAATTGCATGAAA 57.485 29.630 5.42 0.00 0.00 2.69
1676 1980 6.834959 ACTAGTGCGTAATCAATCATTCAG 57.165 37.500 0.00 0.00 0.00 3.02
1763 2083 0.753262 ACCTGGCTATCTACCTTGCG 59.247 55.000 0.00 0.00 0.00 4.85
1764 2084 1.040646 CCTGGCTATCTACCTTGCGA 58.959 55.000 0.00 0.00 0.00 5.10
1765 2085 1.620819 CCTGGCTATCTACCTTGCGAT 59.379 52.381 0.00 0.00 0.00 4.58
1766 2086 2.611473 CCTGGCTATCTACCTTGCGATG 60.611 54.545 0.00 0.00 0.00 3.84
1767 2087 1.344438 TGGCTATCTACCTTGCGATGG 59.656 52.381 0.00 0.00 0.00 3.51
1768 2088 1.338200 GGCTATCTACCTTGCGATGGG 60.338 57.143 0.00 0.00 0.00 4.00
1769 2089 1.618837 GCTATCTACCTTGCGATGGGA 59.381 52.381 0.00 0.00 0.00 4.37
1770 2090 2.353208 GCTATCTACCTTGCGATGGGAG 60.353 54.545 0.00 0.00 36.87 4.30
1778 2098 2.420642 CTTGCGATGGGAGGATATGTG 58.579 52.381 0.00 0.00 0.00 3.21
1806 2126 4.528076 AGTCTGGCCTGATCTAGAAGTA 57.472 45.455 16.12 0.00 0.00 2.24
2010 2334 1.683629 CGGGGTCTACTCTCTCTTGCT 60.684 57.143 0.00 0.00 0.00 3.91
2053 2377 0.799534 CGTACCAATCGACGACCACC 60.800 60.000 0.00 0.00 41.60 4.61
2054 2378 0.244450 GTACCAATCGACGACCACCA 59.756 55.000 0.00 0.00 0.00 4.17
2055 2379 0.244450 TACCAATCGACGACCACCAC 59.756 55.000 0.00 0.00 0.00 4.16
2056 2380 1.292223 CCAATCGACGACCACCACT 59.708 57.895 0.00 0.00 0.00 4.00
2069 2393 1.302511 ACCACTTGCTACTTGGCCG 60.303 57.895 0.00 0.00 33.25 6.13
2070 2394 2.040544 CCACTTGCTACTTGGCCGG 61.041 63.158 0.00 0.00 0.00 6.13
2085 2409 1.603455 CCGGGCCAAGTTGACATGT 60.603 57.895 4.39 0.00 0.00 3.21
2086 2410 1.586154 CCGGGCCAAGTTGACATGTC 61.586 60.000 19.27 19.27 0.00 3.06
2087 2411 1.586154 CGGGCCAAGTTGACATGTCC 61.586 60.000 22.85 8.64 0.00 4.02
2088 2412 1.586154 GGGCCAAGTTGACATGTCCG 61.586 60.000 22.85 6.39 0.00 4.79
2116 2440 4.578516 CCCCGCACATGTTAATAATCTTCA 59.421 41.667 0.00 0.00 0.00 3.02
2146 2470 4.280174 GGCTTAATGATCATCACCAAGCAT 59.720 41.667 27.58 9.89 43.11 3.79
2220 2554 4.218635 CCCTAGGCTGTTCCTTTTCTTTTC 59.781 45.833 2.05 0.00 44.75 2.29
2244 2578 7.173032 TCTTTATTTTTCTCTAACCCTGGGAC 58.827 38.462 22.23 0.00 0.00 4.46
2348 2943 6.610741 ATCGCTGTGATTTTCTCTTAATCC 57.389 37.500 0.00 0.00 31.57 3.01
2358 2953 0.106894 CTCTTAATCCCGAGGTGCCC 59.893 60.000 0.00 0.00 0.00 5.36
2378 2995 2.480759 CCTGAAATAAGCAGCATGTGGC 60.481 50.000 0.00 0.00 45.30 5.01
2871 3488 2.738521 CTCGTGGCCAACTCCGTG 60.739 66.667 7.24 3.75 0.00 4.94
2924 3541 1.459592 CAACGAAACGGTAAGCCTCTG 59.540 52.381 0.00 0.00 0.00 3.35
2925 3542 0.963962 ACGAAACGGTAAGCCTCTGA 59.036 50.000 0.00 0.00 0.00 3.27
2926 3543 1.549170 ACGAAACGGTAAGCCTCTGAT 59.451 47.619 0.00 0.00 0.00 2.90
2929 3546 2.969628 AACGGTAAGCCTCTGATCTG 57.030 50.000 0.00 0.00 0.00 2.90
2930 3547 0.461961 ACGGTAAGCCTCTGATCTGC 59.538 55.000 0.00 0.00 0.00 4.26
2948 3565 1.080230 CTCTGCTCCGGTCAGTGTG 60.080 63.158 20.24 11.59 33.48 3.82
2955 3572 3.434319 CGGTCAGTGTGCCATGGC 61.434 66.667 30.54 30.54 42.35 4.40
2986 3603 5.067936 CGGAGGTGATGTCTTGTATCTTACT 59.932 44.000 0.00 0.00 0.00 2.24
2991 3608 6.879458 GGTGATGTCTTGTATCTTACTTTGGT 59.121 38.462 0.00 0.00 0.00 3.67
2997 3614 6.856426 GTCTTGTATCTTACTTTGGTTGTTGC 59.144 38.462 0.00 0.00 0.00 4.17
3003 3620 0.100503 ACTTTGGTTGTTGCTGCGAC 59.899 50.000 13.15 13.15 0.00 5.19
3231 3848 1.680735 TCCACAACACAACTTCATGCC 59.319 47.619 0.00 0.00 0.00 4.40
3234 3851 2.036217 CACAACACAACTTCATGCCCAT 59.964 45.455 0.00 0.00 0.00 4.00
3238 3855 1.135603 CACAACTTCATGCCCATGTCG 60.136 52.381 8.02 3.80 39.72 4.35
3251 3868 1.000731 CCATGTCGCCATTGGTTTGTT 59.999 47.619 4.26 0.00 0.00 2.83
3253 3870 0.309302 TGTCGCCATTGGTTTGTTCG 59.691 50.000 4.26 0.00 0.00 3.95
3257 3874 1.535015 CGCCATTGGTTTGTTCGTGTT 60.535 47.619 4.26 0.00 0.00 3.32
3266 3883 2.519377 TTGTTCGTGTTGATCCTCGT 57.481 45.000 0.00 0.00 0.00 4.18
3376 3993 0.178975 TTTGGGTGGTGCAAGTAGGG 60.179 55.000 0.00 0.00 0.00 3.53
3395 4012 1.207089 GGGTGGTTCGACAGATGATGA 59.793 52.381 0.00 0.00 0.00 2.92
3396 4013 2.158900 GGGTGGTTCGACAGATGATGAT 60.159 50.000 0.00 0.00 0.00 2.45
3397 4014 2.868583 GGTGGTTCGACAGATGATGATG 59.131 50.000 0.00 0.00 0.00 3.07
3411 4028 3.278574 TGATGATGGGGAAAAGTAAGCG 58.721 45.455 0.00 0.00 0.00 4.68
3490 4107 5.422214 ACTTCGAACTTCTGTAATCCCAT 57.578 39.130 0.00 0.00 0.00 4.00
3611 4228 5.321102 AGTTCAGCCATGGTTGTTGTAATA 58.679 37.500 25.75 4.22 0.00 0.98
3794 4411 7.433425 GCTATCATTGTCATTAAGAGTTTTGGC 59.567 37.037 0.00 0.00 0.00 4.52
3824 4443 4.328536 ACCAAATACCGCAAGTTGTATGA 58.671 39.130 4.48 0.00 0.00 2.15
3864 4483 6.095440 TGCTTCCTCTATTCCAAAATAAGTGC 59.905 38.462 0.00 0.00 0.00 4.40
3948 4568 4.422073 TGAAATAGTCTAGGGCATGTGG 57.578 45.455 0.00 0.00 0.00 4.17
3965 4585 5.221048 GCATGTGGACTTTACTCACAACTTT 60.221 40.000 0.00 0.00 43.38 2.66
3966 4586 6.017440 GCATGTGGACTTTACTCACAACTTTA 60.017 38.462 0.00 0.00 43.38 1.85
3967 4587 7.576236 CATGTGGACTTTACTCACAACTTTAG 58.424 38.462 0.00 0.00 43.38 1.85
3968 4588 6.053005 TGTGGACTTTACTCACAACTTTAGG 58.947 40.000 0.00 0.00 38.30 2.69
3969 4589 5.469084 GTGGACTTTACTCACAACTTTAGGG 59.531 44.000 0.00 0.00 0.00 3.53
3970 4590 5.131475 TGGACTTTACTCACAACTTTAGGGT 59.869 40.000 0.00 0.00 0.00 4.34
3971 4591 5.699915 GGACTTTACTCACAACTTTAGGGTC 59.300 44.000 0.00 0.00 0.00 4.46
3972 4592 6.464039 GGACTTTACTCACAACTTTAGGGTCT 60.464 42.308 0.00 0.00 0.00 3.85
3973 4593 6.522946 ACTTTACTCACAACTTTAGGGTCTC 58.477 40.000 0.00 0.00 0.00 3.36
3974 4594 6.326843 ACTTTACTCACAACTTTAGGGTCTCT 59.673 38.462 0.00 0.00 0.00 3.10
3975 4595 6.742559 TTACTCACAACTTTAGGGTCTCTT 57.257 37.500 0.00 0.00 0.00 2.85
3976 4596 5.632034 ACTCACAACTTTAGGGTCTCTTT 57.368 39.130 0.00 0.00 0.00 2.52
3977 4597 5.368989 ACTCACAACTTTAGGGTCTCTTTG 58.631 41.667 0.00 0.00 0.00 2.77
3978 4598 5.130477 ACTCACAACTTTAGGGTCTCTTTGA 59.870 40.000 0.00 0.00 0.00 2.69
3979 4599 6.183361 ACTCACAACTTTAGGGTCTCTTTGAT 60.183 38.462 0.00 0.00 0.00 2.57
3980 4600 6.601332 TCACAACTTTAGGGTCTCTTTGATT 58.399 36.000 0.00 0.00 0.00 2.57
3981 4601 6.710744 TCACAACTTTAGGGTCTCTTTGATTC 59.289 38.462 0.00 0.00 0.00 2.52
3982 4602 6.486657 CACAACTTTAGGGTCTCTTTGATTCA 59.513 38.462 0.00 0.00 0.00 2.57
3983 4603 7.013274 CACAACTTTAGGGTCTCTTTGATTCAA 59.987 37.037 0.00 0.00 0.00 2.69
3984 4604 7.559897 ACAACTTTAGGGTCTCTTTGATTCAAA 59.440 33.333 11.19 11.19 0.00 2.69
4034 4654 9.591792 GATTGGAATCCTTAGGAATTTTTCTTG 57.408 33.333 4.56 0.00 34.34 3.02
4035 4655 8.491045 TTGGAATCCTTAGGAATTTTTCTTGT 57.509 30.769 4.56 0.00 34.34 3.16
4036 4656 8.491045 TGGAATCCTTAGGAATTTTTCTTGTT 57.509 30.769 4.56 0.00 34.34 2.83
4037 4657 8.933653 TGGAATCCTTAGGAATTTTTCTTGTTT 58.066 29.630 4.56 0.00 34.34 2.83
4038 4658 9.208022 GGAATCCTTAGGAATTTTTCTTGTTTG 57.792 33.333 4.56 0.00 34.34 2.93
4039 4659 9.981114 GAATCCTTAGGAATTTTTCTTGTTTGA 57.019 29.630 4.56 0.00 34.34 2.69
4042 4662 9.981114 TCCTTAGGAATTTTTCTTGTTTGATTC 57.019 29.630 0.00 0.00 0.00 2.52
4043 4663 8.915654 CCTTAGGAATTTTTCTTGTTTGATTCG 58.084 33.333 0.00 0.00 0.00 3.34
4044 4664 9.463443 CTTAGGAATTTTTCTTGTTTGATTCGT 57.537 29.630 0.00 0.00 0.00 3.85
4047 4667 8.082242 AGGAATTTTTCTTGTTTGATTCGTAGG 58.918 33.333 0.00 0.00 0.00 3.18
4048 4668 8.079809 GGAATTTTTCTTGTTTGATTCGTAGGA 58.920 33.333 0.00 0.00 0.00 2.94
4049 4669 9.626045 GAATTTTTCTTGTTTGATTCGTAGGAT 57.374 29.630 0.00 0.00 0.00 3.24
4050 4670 9.981114 AATTTTTCTTGTTTGATTCGTAGGATT 57.019 25.926 0.00 0.00 0.00 3.01
4051 4671 8.795786 TTTTTCTTGTTTGATTCGTAGGATTG 57.204 30.769 0.00 0.00 0.00 2.67
4052 4672 7.737972 TTTCTTGTTTGATTCGTAGGATTGA 57.262 32.000 0.00 0.00 0.00 2.57
4053 4673 7.737972 TTCTTGTTTGATTCGTAGGATTGAA 57.262 32.000 0.00 0.00 0.00 2.69
4054 4674 7.921786 TCTTGTTTGATTCGTAGGATTGAAT 57.078 32.000 0.00 0.00 37.52 2.57
4055 4675 7.974675 TCTTGTTTGATTCGTAGGATTGAATC 58.025 34.615 7.76 7.76 46.77 2.52
4056 4676 7.824289 TCTTGTTTGATTCGTAGGATTGAATCT 59.176 33.333 14.01 0.00 46.73 2.40
4057 4677 7.921786 TGTTTGATTCGTAGGATTGAATCTT 57.078 32.000 14.01 0.00 46.73 2.40
4058 4678 7.751732 TGTTTGATTCGTAGGATTGAATCTTG 58.248 34.615 14.01 0.00 46.73 3.02
4059 4679 7.390440 TGTTTGATTCGTAGGATTGAATCTTGT 59.610 33.333 14.01 0.00 46.73 3.16
4060 4680 8.879759 GTTTGATTCGTAGGATTGAATCTTGTA 58.120 33.333 14.01 0.00 46.73 2.41
4061 4681 8.648557 TTGATTCGTAGGATTGAATCTTGTAG 57.351 34.615 14.01 0.00 46.73 2.74
4062 4682 7.210174 TGATTCGTAGGATTGAATCTTGTAGG 58.790 38.462 14.01 1.70 46.73 3.18
4063 4683 6.785337 TTCGTAGGATTGAATCTTGTAGGA 57.215 37.500 5.03 3.78 0.00 2.94
4064 4684 6.978674 TCGTAGGATTGAATCTTGTAGGAT 57.021 37.500 5.03 0.00 0.00 3.24
4065 4685 7.361457 TCGTAGGATTGAATCTTGTAGGATT 57.639 36.000 5.03 0.00 38.47 3.01
4066 4686 7.792032 TCGTAGGATTGAATCTTGTAGGATTT 58.208 34.615 5.03 0.00 36.24 2.17
4067 4687 8.265055 TCGTAGGATTGAATCTTGTAGGATTTT 58.735 33.333 5.03 0.00 36.24 1.82
4068 4688 8.893727 CGTAGGATTGAATCTTGTAGGATTTTT 58.106 33.333 5.03 0.00 36.24 1.94
4092 4712 8.871629 TTTCCTAAGGATTTATTTGTACTGCA 57.128 30.769 0.00 0.00 0.00 4.41
4093 4713 9.474313 TTTCCTAAGGATTTATTTGTACTGCAT 57.526 29.630 0.00 0.00 0.00 3.96
4094 4714 9.474313 TTCCTAAGGATTTATTTGTACTGCATT 57.526 29.630 0.00 0.00 0.00 3.56
4095 4715 9.474313 TCCTAAGGATTTATTTGTACTGCATTT 57.526 29.630 0.00 0.00 0.00 2.32
4096 4716 9.736023 CCTAAGGATTTATTTGTACTGCATTTC 57.264 33.333 0.00 0.00 0.00 2.17
4098 4718 8.986477 AAGGATTTATTTGTACTGCATTTCAC 57.014 30.769 0.00 0.00 0.00 3.18
4099 4719 8.121305 AGGATTTATTTGTACTGCATTTCACA 57.879 30.769 0.00 0.00 0.00 3.58
4100 4720 8.246180 AGGATTTATTTGTACTGCATTTCACAG 58.754 33.333 0.00 0.00 41.08 3.66
4101 4721 7.489113 GGATTTATTTGTACTGCATTTCACAGG 59.511 37.037 0.00 0.00 39.55 4.00
4102 4722 7.517614 TTTATTTGTACTGCATTTCACAGGA 57.482 32.000 0.00 0.00 39.55 3.86
4103 4723 7.517614 TTATTTGTACTGCATTTCACAGGAA 57.482 32.000 0.00 0.00 39.55 3.36
4104 4724 6.594788 ATTTGTACTGCATTTCACAGGAAT 57.405 33.333 0.00 0.00 39.55 3.01
4105 4725 6.403866 TTTGTACTGCATTTCACAGGAATT 57.596 33.333 0.00 0.00 39.55 2.17
4106 4726 5.627499 TGTACTGCATTTCACAGGAATTC 57.373 39.130 0.00 0.00 39.55 2.17
4107 4727 5.316167 TGTACTGCATTTCACAGGAATTCT 58.684 37.500 5.23 0.00 39.55 2.40
4108 4728 6.472016 TGTACTGCATTTCACAGGAATTCTA 58.528 36.000 5.23 0.00 39.55 2.10
4109 4729 6.939730 TGTACTGCATTTCACAGGAATTCTAA 59.060 34.615 5.23 0.00 39.55 2.10
4110 4730 6.259550 ACTGCATTTCACAGGAATTCTAAC 57.740 37.500 5.23 0.00 39.55 2.34
4111 4731 5.769662 ACTGCATTTCACAGGAATTCTAACA 59.230 36.000 5.23 0.00 39.55 2.41
4112 4732 6.435277 ACTGCATTTCACAGGAATTCTAACAT 59.565 34.615 5.23 0.00 39.55 2.71
4113 4733 6.855836 TGCATTTCACAGGAATTCTAACATC 58.144 36.000 5.23 0.00 31.93 3.06
4114 4734 6.127647 TGCATTTCACAGGAATTCTAACATCC 60.128 38.462 5.23 0.00 31.93 3.51
4115 4735 6.127647 GCATTTCACAGGAATTCTAACATCCA 60.128 38.462 5.23 0.00 35.62 3.41
4116 4736 6.817765 TTTCACAGGAATTCTAACATCCAC 57.182 37.500 5.23 0.00 35.62 4.02
4117 4737 5.762179 TCACAGGAATTCTAACATCCACT 57.238 39.130 5.23 0.00 35.62 4.00
4118 4738 5.734720 TCACAGGAATTCTAACATCCACTC 58.265 41.667 5.23 0.00 35.62 3.51
4119 4739 4.878397 CACAGGAATTCTAACATCCACTCC 59.122 45.833 5.23 0.00 35.62 3.85
4120 4740 4.536090 ACAGGAATTCTAACATCCACTCCA 59.464 41.667 5.23 0.00 35.62 3.86
4121 4741 5.014123 ACAGGAATTCTAACATCCACTCCAA 59.986 40.000 5.23 0.00 35.62 3.53
4122 4742 5.355350 CAGGAATTCTAACATCCACTCCAAC 59.645 44.000 5.23 0.00 35.62 3.77
4123 4743 4.640647 GGAATTCTAACATCCACTCCAACC 59.359 45.833 5.23 0.00 33.30 3.77
4124 4744 5.501156 GAATTCTAACATCCACTCCAACCT 58.499 41.667 0.00 0.00 0.00 3.50
4125 4745 4.553330 TTCTAACATCCACTCCAACCTC 57.447 45.455 0.00 0.00 0.00 3.85
4126 4746 3.791320 TCTAACATCCACTCCAACCTCT 58.209 45.455 0.00 0.00 0.00 3.69
4127 4747 4.168101 TCTAACATCCACTCCAACCTCTT 58.832 43.478 0.00 0.00 0.00 2.85
4128 4748 2.867109 ACATCCACTCCAACCTCTTG 57.133 50.000 0.00 0.00 0.00 3.02
4143 4763 5.459536 ACCTCTTGGAAGAAATTCTTTGC 57.540 39.130 9.84 0.00 36.73 3.68
4144 4764 5.143369 ACCTCTTGGAAGAAATTCTTTGCT 58.857 37.500 9.84 0.00 36.73 3.91
4145 4765 5.600069 ACCTCTTGGAAGAAATTCTTTGCTT 59.400 36.000 9.84 0.00 36.73 3.91
4146 4766 6.098838 ACCTCTTGGAAGAAATTCTTTGCTTT 59.901 34.615 9.84 0.00 36.73 3.51
4147 4767 6.644181 CCTCTTGGAAGAAATTCTTTGCTTTC 59.356 38.462 9.84 0.00 36.73 2.62
4148 4768 6.515832 TCTTGGAAGAAATTCTTTGCTTTCC 58.484 36.000 9.84 6.00 36.73 3.13
4149 4769 5.213891 TGGAAGAAATTCTTTGCTTTCCC 57.786 39.130 9.84 5.22 36.73 3.97
4150 4770 4.040339 TGGAAGAAATTCTTTGCTTTCCCC 59.960 41.667 9.84 4.53 36.73 4.81
4151 4771 4.040339 GGAAGAAATTCTTTGCTTTCCCCA 59.960 41.667 9.84 0.00 36.73 4.96
4152 4772 5.280164 GGAAGAAATTCTTTGCTTTCCCCAT 60.280 40.000 9.84 0.00 36.73 4.00
4153 4773 5.156608 AGAAATTCTTTGCTTTCCCCATG 57.843 39.130 0.00 0.00 32.90 3.66
4154 4774 3.339253 AATTCTTTGCTTTCCCCATGC 57.661 42.857 0.00 0.00 0.00 4.06
4155 4775 0.975887 TTCTTTGCTTTCCCCATGCC 59.024 50.000 0.00 0.00 0.00 4.40
4156 4776 0.178938 TCTTTGCTTTCCCCATGCCA 60.179 50.000 0.00 0.00 0.00 4.92
4157 4777 0.037046 CTTTGCTTTCCCCATGCCAC 60.037 55.000 0.00 0.00 0.00 5.01
4158 4778 0.762082 TTTGCTTTCCCCATGCCACA 60.762 50.000 0.00 0.00 0.00 4.17
4159 4779 0.762082 TTGCTTTCCCCATGCCACAA 60.762 50.000 0.00 0.00 0.00 3.33
4160 4780 0.544833 TGCTTTCCCCATGCCACAAT 60.545 50.000 0.00 0.00 0.00 2.71
4161 4781 0.176449 GCTTTCCCCATGCCACAATC 59.824 55.000 0.00 0.00 0.00 2.67
4162 4782 1.559368 CTTTCCCCATGCCACAATCA 58.441 50.000 0.00 0.00 0.00 2.57
4163 4783 1.901159 CTTTCCCCATGCCACAATCAA 59.099 47.619 0.00 0.00 0.00 2.57
4164 4784 2.021262 TTCCCCATGCCACAATCAAA 57.979 45.000 0.00 0.00 0.00 2.69
4165 4785 1.265236 TCCCCATGCCACAATCAAAC 58.735 50.000 0.00 0.00 0.00 2.93
4166 4786 0.975135 CCCCATGCCACAATCAAACA 59.025 50.000 0.00 0.00 0.00 2.83
4167 4787 1.347050 CCCCATGCCACAATCAAACAA 59.653 47.619 0.00 0.00 0.00 2.83
4168 4788 2.224475 CCCCATGCCACAATCAAACAAA 60.224 45.455 0.00 0.00 0.00 2.83
4169 4789 2.807392 CCCATGCCACAATCAAACAAAC 59.193 45.455 0.00 0.00 0.00 2.93
4170 4790 3.494749 CCCATGCCACAATCAAACAAACT 60.495 43.478 0.00 0.00 0.00 2.66
4171 4791 3.742369 CCATGCCACAATCAAACAAACTC 59.258 43.478 0.00 0.00 0.00 3.01
4172 4792 4.370049 CATGCCACAATCAAACAAACTCA 58.630 39.130 0.00 0.00 0.00 3.41
4173 4793 4.462508 TGCCACAATCAAACAAACTCAA 57.537 36.364 0.00 0.00 0.00 3.02
4174 4794 4.825422 TGCCACAATCAAACAAACTCAAA 58.175 34.783 0.00 0.00 0.00 2.69
4175 4795 5.426504 TGCCACAATCAAACAAACTCAAAT 58.573 33.333 0.00 0.00 0.00 2.32
4176 4796 5.523188 TGCCACAATCAAACAAACTCAAATC 59.477 36.000 0.00 0.00 0.00 2.17
4177 4797 5.050159 GCCACAATCAAACAAACTCAAATCC 60.050 40.000 0.00 0.00 0.00 3.01
4178 4798 6.282930 CCACAATCAAACAAACTCAAATCCT 58.717 36.000 0.00 0.00 0.00 3.24
4179 4799 7.432869 CCACAATCAAACAAACTCAAATCCTA 58.567 34.615 0.00 0.00 0.00 2.94
4180 4800 8.090214 CCACAATCAAACAAACTCAAATCCTAT 58.910 33.333 0.00 0.00 0.00 2.57
4183 4803 9.793252 CAATCAAACAAACTCAAATCCTATAGG 57.207 33.333 13.07 13.07 0.00 2.57
4198 4818 6.378661 TCCTATAGGAATCCAATGGACATG 57.621 41.667 19.59 0.00 42.18 3.21
4199 4819 4.946157 CCTATAGGAATCCAATGGACATGC 59.054 45.833 14.11 1.81 37.39 4.06
4200 4820 2.077687 AGGAATCCAATGGACATGCC 57.922 50.000 3.09 0.00 32.98 4.40
4201 4821 8.449008 CCTATAGGAATCCAATGGACATGCCA 62.449 46.154 14.11 10.66 44.91 4.92
4213 4833 5.581126 TGGACATGCCATTTCAATCTTAC 57.419 39.130 4.93 0.00 43.33 2.34
4214 4834 4.096231 TGGACATGCCATTTCAATCTTACG 59.904 41.667 4.93 0.00 43.33 3.18
4215 4835 4.096382 GGACATGCCATTTCAATCTTACGT 59.904 41.667 0.00 0.00 36.34 3.57
4216 4836 5.393027 GGACATGCCATTTCAATCTTACGTT 60.393 40.000 0.00 0.00 36.34 3.99
4217 4837 6.024552 ACATGCCATTTCAATCTTACGTTT 57.975 33.333 0.00 0.00 0.00 3.60
4218 4838 6.454795 ACATGCCATTTCAATCTTACGTTTT 58.545 32.000 0.00 0.00 0.00 2.43
4219 4839 6.586082 ACATGCCATTTCAATCTTACGTTTTC 59.414 34.615 0.00 0.00 0.00 2.29
4220 4840 5.465935 TGCCATTTCAATCTTACGTTTTCC 58.534 37.500 0.00 0.00 0.00 3.13
4221 4841 4.862574 GCCATTTCAATCTTACGTTTTCCC 59.137 41.667 0.00 0.00 0.00 3.97
4222 4842 5.336451 GCCATTTCAATCTTACGTTTTCCCT 60.336 40.000 0.00 0.00 0.00 4.20
4223 4843 6.127842 GCCATTTCAATCTTACGTTTTCCCTA 60.128 38.462 0.00 0.00 0.00 3.53
4224 4844 7.416326 GCCATTTCAATCTTACGTTTTCCCTAT 60.416 37.037 0.00 0.00 0.00 2.57
4225 4845 8.466798 CCATTTCAATCTTACGTTTTCCCTATT 58.533 33.333 0.00 0.00 0.00 1.73
4226 4846 9.503427 CATTTCAATCTTACGTTTTCCCTATTC 57.497 33.333 0.00 0.00 0.00 1.75
4227 4847 7.619964 TTCAATCTTACGTTTTCCCTATTCC 57.380 36.000 0.00 0.00 0.00 3.01
4228 4848 6.954232 TCAATCTTACGTTTTCCCTATTCCT 58.046 36.000 0.00 0.00 0.00 3.36
4229 4849 6.821665 TCAATCTTACGTTTTCCCTATTCCTG 59.178 38.462 0.00 0.00 0.00 3.86
4230 4850 5.750352 TCTTACGTTTTCCCTATTCCTGT 57.250 39.130 0.00 0.00 0.00 4.00
4231 4851 5.484715 TCTTACGTTTTCCCTATTCCTGTG 58.515 41.667 0.00 0.00 0.00 3.66
4232 4852 3.782656 ACGTTTTCCCTATTCCTGTGT 57.217 42.857 0.00 0.00 0.00 3.72
4233 4853 4.094830 ACGTTTTCCCTATTCCTGTGTT 57.905 40.909 0.00 0.00 0.00 3.32
4234 4854 4.466827 ACGTTTTCCCTATTCCTGTGTTT 58.533 39.130 0.00 0.00 0.00 2.83
4235 4855 4.891168 ACGTTTTCCCTATTCCTGTGTTTT 59.109 37.500 0.00 0.00 0.00 2.43
4236 4856 5.361571 ACGTTTTCCCTATTCCTGTGTTTTT 59.638 36.000 0.00 0.00 0.00 1.94
4237 4857 5.689961 CGTTTTCCCTATTCCTGTGTTTTTG 59.310 40.000 0.00 0.00 0.00 2.44
4238 4858 4.864704 TTCCCTATTCCTGTGTTTTTGC 57.135 40.909 0.00 0.00 0.00 3.68
4239 4859 3.838565 TCCCTATTCCTGTGTTTTTGCA 58.161 40.909 0.00 0.00 0.00 4.08
4240 4860 4.219115 TCCCTATTCCTGTGTTTTTGCAA 58.781 39.130 0.00 0.00 0.00 4.08
4241 4861 4.837860 TCCCTATTCCTGTGTTTTTGCAAT 59.162 37.500 0.00 0.00 0.00 3.56
4242 4862 5.047377 TCCCTATTCCTGTGTTTTTGCAATC 60.047 40.000 0.00 0.00 0.00 2.67
4243 4863 5.170748 CCTATTCCTGTGTTTTTGCAATCC 58.829 41.667 0.00 0.00 0.00 3.01
4244 4864 4.961438 ATTCCTGTGTTTTTGCAATCCT 57.039 36.364 0.00 0.00 0.00 3.24
4245 4865 6.152661 CCTATTCCTGTGTTTTTGCAATCCTA 59.847 38.462 0.00 0.00 0.00 2.94
4246 4866 4.846779 TCCTGTGTTTTTGCAATCCTAC 57.153 40.909 0.00 0.00 0.00 3.18
4247 4867 3.252215 TCCTGTGTTTTTGCAATCCTACG 59.748 43.478 0.00 0.00 0.00 3.51
4248 4868 3.252215 CCTGTGTTTTTGCAATCCTACGA 59.748 43.478 0.00 0.00 0.00 3.43
4249 4869 4.261405 CCTGTGTTTTTGCAATCCTACGAA 60.261 41.667 0.00 0.00 0.00 3.85
4250 4870 5.446143 TGTGTTTTTGCAATCCTACGAAT 57.554 34.783 0.00 0.00 0.00 3.34
4251 4871 5.457140 TGTGTTTTTGCAATCCTACGAATC 58.543 37.500 0.00 0.00 0.00 2.52
4252 4872 5.009110 TGTGTTTTTGCAATCCTACGAATCA 59.991 36.000 0.00 0.00 0.00 2.57
4253 4873 5.918011 GTGTTTTTGCAATCCTACGAATCAA 59.082 36.000 0.00 0.00 0.00 2.57
4254 4874 6.419413 GTGTTTTTGCAATCCTACGAATCAAA 59.581 34.615 0.00 0.00 0.00 2.69
4255 4875 6.640499 TGTTTTTGCAATCCTACGAATCAAAG 59.360 34.615 0.00 0.00 0.00 2.77
4256 4876 6.567687 TTTTGCAATCCTACGAATCAAAGA 57.432 33.333 0.00 0.00 0.00 2.52
4257 4877 5.801350 TTGCAATCCTACGAATCAAAGAG 57.199 39.130 0.00 0.00 0.00 2.85
4258 4878 4.191544 TGCAATCCTACGAATCAAAGAGG 58.808 43.478 0.00 0.00 0.00 3.69
4259 4879 3.002759 GCAATCCTACGAATCAAAGAGGC 59.997 47.826 0.00 0.00 0.00 4.70
4309 4929 5.657745 TGATTTTCAATAGTCATGGTGGCAT 59.342 36.000 0.00 0.00 0.00 4.40
4368 4988 4.495422 ACTCATCCAAATGACGTCACTAC 58.505 43.478 22.71 0.00 36.98 2.73
4370 4990 2.357327 TCCAAATGACGTCACTACCG 57.643 50.000 22.71 7.74 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.298340 CCTTGGCATCACCGTACCA 59.702 57.895 0.00 0.00 43.94 3.25
178 180 3.966665 AGGGAGAAAAATGCTGGAAAACA 59.033 39.130 0.00 0.00 0.00 2.83
190 192 3.975479 TGGGGTGTAAAGGGAGAAAAA 57.025 42.857 0.00 0.00 0.00 1.94
258 260 2.426738 CAACTGAGTCACCCTGCAAAAA 59.573 45.455 0.00 0.00 0.00 1.94
259 261 2.023673 CAACTGAGTCACCCTGCAAAA 58.976 47.619 0.00 0.00 0.00 2.44
260 262 1.064758 ACAACTGAGTCACCCTGCAAA 60.065 47.619 0.00 0.00 0.00 3.68
261 263 0.546122 ACAACTGAGTCACCCTGCAA 59.454 50.000 0.00 0.00 0.00 4.08
262 264 0.546122 AACAACTGAGTCACCCTGCA 59.454 50.000 0.00 0.00 0.00 4.41
263 265 1.680338 AAACAACTGAGTCACCCTGC 58.320 50.000 0.00 0.00 0.00 4.85
264 266 5.063204 TCAATAAACAACTGAGTCACCCTG 58.937 41.667 0.00 0.00 0.00 4.45
265 267 5.304686 TCAATAAACAACTGAGTCACCCT 57.695 39.130 0.00 0.00 0.00 4.34
266 268 4.083271 GCTCAATAAACAACTGAGTCACCC 60.083 45.833 0.00 0.00 39.05 4.61
267 269 4.515191 TGCTCAATAAACAACTGAGTCACC 59.485 41.667 0.00 0.00 39.05 4.02
268 270 5.673337 TGCTCAATAAACAACTGAGTCAC 57.327 39.130 0.00 0.00 39.05 3.67
283 285 4.917998 CGTATCGTATACTGCTTGCTCAAT 59.082 41.667 0.56 0.00 0.00 2.57
285 287 3.562557 TCGTATCGTATACTGCTTGCTCA 59.437 43.478 0.56 0.00 0.00 4.26
309 311 4.553429 GGCGTAGACGATCAAAACAAATTG 59.447 41.667 6.19 0.00 43.02 2.32
310 312 4.719040 GGCGTAGACGATCAAAACAAATT 58.281 39.130 6.19 0.00 43.02 1.82
311 313 4.336532 GGCGTAGACGATCAAAACAAAT 57.663 40.909 6.19 0.00 43.02 2.32
333 335 3.537206 AACAGTGGGCAGACGCTCC 62.537 63.158 0.00 0.00 38.12 4.70
334 336 2.029844 GAACAGTGGGCAGACGCTC 61.030 63.158 0.00 0.00 40.02 5.03
335 337 2.031163 GAACAGTGGGCAGACGCT 59.969 61.111 0.00 0.00 38.60 5.07
336 338 1.444119 TTTGAACAGTGGGCAGACGC 61.444 55.000 0.00 0.00 37.44 5.19
337 339 1.002468 CTTTTGAACAGTGGGCAGACG 60.002 52.381 0.00 0.00 0.00 4.18
338 340 2.297701 TCTTTTGAACAGTGGGCAGAC 58.702 47.619 0.00 0.00 0.00 3.51
339 341 2.727123 TCTTTTGAACAGTGGGCAGA 57.273 45.000 0.00 0.00 0.00 4.26
340 342 2.951642 TCTTCTTTTGAACAGTGGGCAG 59.048 45.455 0.00 0.00 34.31 4.85
341 343 3.011566 TCTTCTTTTGAACAGTGGGCA 57.988 42.857 0.00 0.00 34.31 5.36
342 344 4.590850 ATTCTTCTTTTGAACAGTGGGC 57.409 40.909 0.00 0.00 34.31 5.36
343 345 5.234972 GCAAATTCTTCTTTTGAACAGTGGG 59.765 40.000 0.00 0.00 36.40 4.61
344 346 6.044682 AGCAAATTCTTCTTTTGAACAGTGG 58.955 36.000 0.00 0.00 36.40 4.00
345 347 7.701924 TGTAGCAAATTCTTCTTTTGAACAGTG 59.298 33.333 0.61 0.00 36.40 3.66
346 348 7.702348 GTGTAGCAAATTCTTCTTTTGAACAGT 59.298 33.333 0.61 0.00 36.40 3.55
347 349 7.168135 GGTGTAGCAAATTCTTCTTTTGAACAG 59.832 37.037 0.61 0.00 36.40 3.16
348 350 6.978080 GGTGTAGCAAATTCTTCTTTTGAACA 59.022 34.615 0.61 1.77 36.40 3.18
349 351 6.978080 TGGTGTAGCAAATTCTTCTTTTGAAC 59.022 34.615 0.61 0.00 36.40 3.18
350 352 7.106439 TGGTGTAGCAAATTCTTCTTTTGAA 57.894 32.000 0.61 0.00 36.40 2.69
351 353 6.707440 TGGTGTAGCAAATTCTTCTTTTGA 57.293 33.333 0.61 0.00 36.40 2.69
352 354 7.147312 TCATGGTGTAGCAAATTCTTCTTTTG 58.853 34.615 0.00 0.00 37.18 2.44
353 355 7.288810 TCATGGTGTAGCAAATTCTTCTTTT 57.711 32.000 0.00 0.00 0.00 2.27
354 356 6.899393 TCATGGTGTAGCAAATTCTTCTTT 57.101 33.333 0.00 0.00 0.00 2.52
355 357 7.472334 AATCATGGTGTAGCAAATTCTTCTT 57.528 32.000 0.00 0.00 0.00 2.52
356 358 7.039504 ACAAATCATGGTGTAGCAAATTCTTCT 60.040 33.333 0.00 0.00 0.00 2.85
359 361 6.392354 CACAAATCATGGTGTAGCAAATTCT 58.608 36.000 0.00 0.00 0.00 2.40
369 371 1.317613 ACGTGCACAAATCATGGTGT 58.682 45.000 18.64 0.00 37.35 4.16
379 381 0.806492 TCAACTGCGTACGTGCACAA 60.806 50.000 18.64 0.42 40.62 3.33
390 392 1.664016 GCCTTGACACAATCAACTGCG 60.664 52.381 0.00 0.00 42.62 5.18
392 394 3.567164 AGAAGCCTTGACACAATCAACTG 59.433 43.478 0.00 0.00 42.62 3.16
393 395 3.817647 GAGAAGCCTTGACACAATCAACT 59.182 43.478 0.00 0.00 42.62 3.16
419 421 9.260002 CTGGTATTTTCCAATGTAATTAATGGC 57.740 33.333 7.88 0.00 37.01 4.40
431 433 9.986157 ATATGCATATCTCTGGTATTTTCCAAT 57.014 29.630 13.63 0.00 37.01 3.16
452 454 7.798516 GTGCATTGTATTAGTGTGTGTATATGC 59.201 37.037 0.00 0.00 0.00 3.14
495 503 3.989698 ATCAACGCGGTGCCGAGAG 62.990 63.158 21.87 12.06 41.57 3.20
500 514 3.499737 CTGGATCAACGCGGTGCC 61.500 66.667 21.87 16.97 0.00 5.01
507 523 0.038618 TGACACCGACTGGATCAACG 60.039 55.000 0.00 0.00 39.21 4.10
730 984 5.048154 GGGATTATAACTACGAGACAGGGAC 60.048 48.000 0.00 0.00 0.00 4.46
891 1145 3.890936 AACGGTGGCTCAGCTCAGC 62.891 63.158 0.00 0.00 38.84 4.26
955 1210 1.135960 GGAGAGGGGGATGAAGAAGG 58.864 60.000 0.00 0.00 0.00 3.46
966 1224 1.069358 GATACAAAGAGCGGAGAGGGG 59.931 57.143 0.00 0.00 0.00 4.79
983 1241 2.431454 ATGGCGGTGGTGAGCGATA 61.431 57.895 0.00 0.00 46.19 2.92
1032 1290 0.867753 CGTCGAATCAAGGCTCGGAG 60.868 60.000 0.00 0.00 35.76 4.63
1043 1301 3.621715 AGACCAAAATAAGGCGTCGAATC 59.378 43.478 0.00 0.00 0.00 2.52
1050 1308 2.487762 TCTTGCAGACCAAAATAAGGCG 59.512 45.455 0.00 0.00 31.94 5.52
1051 1309 4.237724 GTTCTTGCAGACCAAAATAAGGC 58.762 43.478 0.00 0.00 31.94 4.35
1106 1400 4.081697 TGGTATCTCTTGCGACAATCAAGA 60.082 41.667 5.48 5.48 45.25 3.02
1114 1408 1.927895 CACCTGGTATCTCTTGCGAC 58.072 55.000 0.00 0.00 0.00 5.19
1115 1409 0.175760 GCACCTGGTATCTCTTGCGA 59.824 55.000 0.00 0.00 0.00 5.10
1121 1415 4.160626 AGAAACTACTGCACCTGGTATCTC 59.839 45.833 0.00 0.00 0.00 2.75
1134 1428 2.227388 ACCGTACCACGAGAAACTACTG 59.773 50.000 0.00 0.00 46.05 2.74
1152 1446 2.342910 CGGTATCCCTATTCGAACCG 57.657 55.000 0.00 2.85 43.20 4.44
1278 1572 8.183104 AGAAAAACTTTTAGCCTGATTAAGCT 57.817 30.769 0.00 0.00 43.20 3.74
1302 1597 4.040095 TGGCTCTGGATGATCATGTCTTAG 59.960 45.833 14.30 5.24 0.00 2.18
1334 1630 6.565247 GCAATTCAAATGGTGCAGAAGAAAAG 60.565 38.462 0.00 0.00 36.97 2.27
1362 1658 9.667107 TTTTCTACAGAACTTGGATTATACCTG 57.333 33.333 0.00 0.00 33.13 4.00
1492 1789 8.514594 ACCCGCAAAATGAAGATAATATATGTG 58.485 33.333 0.00 0.00 0.00 3.21
1502 1799 4.019174 AGATTCACCCGCAAAATGAAGAT 58.981 39.130 0.00 0.00 35.89 2.40
1506 1803 3.071874 AGAGATTCACCCGCAAAATGA 57.928 42.857 0.00 0.00 0.00 2.57
1507 1804 3.689161 TGTAGAGATTCACCCGCAAAATG 59.311 43.478 0.00 0.00 0.00 2.32
1508 1805 3.950397 TGTAGAGATTCACCCGCAAAAT 58.050 40.909 0.00 0.00 0.00 1.82
1525 1824 6.773638 AGCCTTTCCACCAGAATATATGTAG 58.226 40.000 0.00 0.00 33.44 2.74
1624 1925 8.915057 ATTAAATCTTCATGTGATAGGTGAGG 57.085 34.615 0.00 0.00 0.00 3.86
1763 2083 3.753294 AACGTCACATATCCTCCCATC 57.247 47.619 0.00 0.00 0.00 3.51
1764 2084 4.654262 ACTAAACGTCACATATCCTCCCAT 59.346 41.667 0.00 0.00 0.00 4.00
1765 2085 4.028131 ACTAAACGTCACATATCCTCCCA 58.972 43.478 0.00 0.00 0.00 4.37
1766 2086 4.341520 AGACTAAACGTCACATATCCTCCC 59.658 45.833 0.00 0.00 45.32 4.30
1767 2087 5.282510 CAGACTAAACGTCACATATCCTCC 58.717 45.833 0.00 0.00 45.32 4.30
1768 2088 5.282510 CCAGACTAAACGTCACATATCCTC 58.717 45.833 0.00 0.00 45.32 3.71
1769 2089 4.441634 GCCAGACTAAACGTCACATATCCT 60.442 45.833 0.00 0.00 45.32 3.24
1770 2090 3.802685 GCCAGACTAAACGTCACATATCC 59.197 47.826 0.00 0.00 45.32 2.59
1778 2098 2.166664 AGATCAGGCCAGACTAAACGTC 59.833 50.000 5.01 0.00 43.17 4.34
1790 2110 5.799827 AATCTGTACTTCTAGATCAGGCC 57.200 43.478 0.00 0.00 32.71 5.19
1910 2234 9.204570 GTATACATGGACCAGTTGAATATGTAC 57.795 37.037 0.00 0.00 33.83 2.90
1911 2235 9.154632 AGTATACATGGACCAGTTGAATATGTA 57.845 33.333 5.50 1.47 35.01 2.29
2010 2334 1.273327 GTACGACCGAGGAAAAAGGGA 59.727 52.381 0.00 0.00 0.00 4.20
2047 2371 1.523758 CCAAGTAGCAAGTGGTGGTC 58.476 55.000 0.00 0.00 39.22 4.02
2053 2377 2.040544 CCCGGCCAAGTAGCAAGTG 61.041 63.158 2.24 0.00 0.00 3.16
2054 2378 2.351276 CCCGGCCAAGTAGCAAGT 59.649 61.111 2.24 0.00 0.00 3.16
2055 2379 3.134127 GCCCGGCCAAGTAGCAAG 61.134 66.667 2.24 0.00 0.00 4.01
2069 2393 1.586154 CGGACATGTCAACTTGGCCC 61.586 60.000 26.47 6.28 44.05 5.80
2070 2394 0.605319 TCGGACATGTCAACTTGGCC 60.605 55.000 26.47 10.21 43.63 5.36
2085 2409 3.080765 ATGTGCGGGGACATCGGA 61.081 61.111 0.00 0.00 30.34 4.55
2086 2410 2.896854 CATGTGCGGGGACATCGG 60.897 66.667 2.62 0.00 34.18 4.18
2087 2411 0.461163 TAACATGTGCGGGGACATCG 60.461 55.000 0.00 2.76 34.18 3.84
2088 2412 1.745232 TTAACATGTGCGGGGACATC 58.255 50.000 0.00 0.00 34.18 3.06
2116 2440 5.068636 GTGATGATCATTAAGCCATGGTCT 58.931 41.667 14.67 8.28 35.57 3.85
2146 2470 3.486383 CAACTTACCCAAGGAAGCTTCA 58.514 45.455 27.02 2.40 35.97 3.02
2220 2554 7.121315 CAGTCCCAGGGTTAGAGAAAAATAAAG 59.879 40.741 5.01 0.00 0.00 1.85
2244 2578 1.208293 GCTAGAGAACTTGGGACCCAG 59.792 57.143 14.35 10.64 33.81 4.45
2358 2953 2.805845 GCCACATGCTGCTTATTTCAG 58.194 47.619 0.00 0.00 36.87 3.02
2727 3344 4.168291 CCGCCAGGGCCTCTTCTC 62.168 72.222 0.95 0.00 37.98 2.87
2814 3431 2.045131 GTACTCGGCCCTCGACTGT 61.045 63.158 0.00 0.00 43.74 3.55
2901 3518 1.208358 GCTTACCGTTTCGTTGCCC 59.792 57.895 0.00 0.00 0.00 5.36
2924 3541 1.067250 GACCGGAGCAGAGCAGATC 59.933 63.158 9.46 0.00 0.00 2.75
2925 3542 1.674764 CTGACCGGAGCAGAGCAGAT 61.675 60.000 19.70 0.00 35.39 2.90
2926 3543 2.283173 TGACCGGAGCAGAGCAGA 60.283 61.111 9.46 0.00 0.00 4.26
2929 3546 2.125753 CACTGACCGGAGCAGAGC 60.126 66.667 27.44 3.09 36.86 4.09
2930 3547 1.080230 CACACTGACCGGAGCAGAG 60.080 63.158 27.44 22.99 36.86 3.35
2955 3572 1.970917 GACATCACCTCCGCGCAAAG 61.971 60.000 8.75 3.22 0.00 2.77
2986 3603 1.435515 GGTCGCAGCAACAACCAAA 59.564 52.632 0.00 0.00 0.00 3.28
2991 3608 2.324330 CCATCGGTCGCAGCAACAA 61.324 57.895 0.00 0.00 0.00 2.83
3238 3855 1.857837 CAACACGAACAAACCAATGGC 59.142 47.619 0.00 0.00 0.00 4.40
3251 3868 3.380479 AGAAAACGAGGATCAACACGA 57.620 42.857 0.00 0.00 33.17 4.35
3253 3870 6.241385 CGAATAAGAAAACGAGGATCAACAC 58.759 40.000 0.00 0.00 33.17 3.32
3257 3874 4.868171 CACCGAATAAGAAAACGAGGATCA 59.132 41.667 0.00 0.00 33.17 2.92
3294 3911 3.438087 CAGAACTCAAATTCATGGCGAGT 59.562 43.478 0.00 0.00 38.55 4.18
3376 3993 2.672961 TCATCATCTGTCGAACCACC 57.327 50.000 0.00 0.00 0.00 4.61
3395 4012 1.913419 TCCTCGCTTACTTTTCCCCAT 59.087 47.619 0.00 0.00 0.00 4.00
3396 4013 1.354101 TCCTCGCTTACTTTTCCCCA 58.646 50.000 0.00 0.00 0.00 4.96
3397 4014 2.170817 AGATCCTCGCTTACTTTTCCCC 59.829 50.000 0.00 0.00 0.00 4.81
3411 4028 7.093771 ACACAATTTACATTCCCAAAGATCCTC 60.094 37.037 0.00 0.00 0.00 3.71
3521 4138 8.242053 ACAATCAAAAGAATATGAACTCTGCTG 58.758 33.333 0.00 0.00 0.00 4.41
3611 4228 1.679032 GCCCCGCAACAGAATTCTAGT 60.679 52.381 7.86 6.21 0.00 2.57
3715 4332 0.942410 CGTGGGTTCGACATTCACGT 60.942 55.000 16.49 0.00 43.92 4.49
3794 4411 4.454504 ACTTGCGGTATTTGGTACAGAAAG 59.545 41.667 0.00 5.03 44.87 2.62
3810 4427 3.849911 TCTCTCTTCATACAACTTGCGG 58.150 45.455 0.00 0.00 0.00 5.69
3824 4443 7.377696 AGAGGAAGCATTATTGATCTCTCTT 57.622 36.000 0.00 0.00 0.00 2.85
3840 4459 6.460261 GGCACTTATTTTGGAATAGAGGAAGC 60.460 42.308 0.00 0.00 0.00 3.86
3884 4504 9.515226 AATAAGTCTGGCTGATTTAGTACAAAA 57.485 29.630 13.21 0.00 31.83 2.44
3903 4523 3.055312 ACTCCCTCGTCCCAAAATAAGTC 60.055 47.826 0.00 0.00 0.00 3.01
3948 4568 6.522946 AGACCCTAAAGTTGTGAGTAAAGTC 58.477 40.000 0.00 0.00 0.00 3.01
4008 4628 9.591792 CAAGAAAAATTCCTAAGGATTCCAATC 57.408 33.333 5.29 0.00 34.66 2.67
4009 4629 9.104713 ACAAGAAAAATTCCTAAGGATTCCAAT 57.895 29.630 5.29 0.00 0.00 3.16
4010 4630 8.491045 ACAAGAAAAATTCCTAAGGATTCCAA 57.509 30.769 5.29 0.00 0.00 3.53
4011 4631 8.491045 AACAAGAAAAATTCCTAAGGATTCCA 57.509 30.769 5.29 0.00 0.00 3.53
4012 4632 9.208022 CAAACAAGAAAAATTCCTAAGGATTCC 57.792 33.333 0.00 0.00 0.00 3.01
4013 4633 9.981114 TCAAACAAGAAAAATTCCTAAGGATTC 57.019 29.630 0.00 0.00 0.00 2.52
4016 4636 9.981114 GAATCAAACAAGAAAAATTCCTAAGGA 57.019 29.630 0.00 0.00 0.00 3.36
4017 4637 8.915654 CGAATCAAACAAGAAAAATTCCTAAGG 58.084 33.333 0.00 0.00 0.00 2.69
4018 4638 9.463443 ACGAATCAAACAAGAAAAATTCCTAAG 57.537 29.630 0.00 0.00 0.00 2.18
4021 4641 8.082242 CCTACGAATCAAACAAGAAAAATTCCT 58.918 33.333 0.00 0.00 0.00 3.36
4022 4642 8.079809 TCCTACGAATCAAACAAGAAAAATTCC 58.920 33.333 0.00 0.00 0.00 3.01
4023 4643 9.626045 ATCCTACGAATCAAACAAGAAAAATTC 57.374 29.630 0.00 0.00 0.00 2.17
4024 4644 9.981114 AATCCTACGAATCAAACAAGAAAAATT 57.019 25.926 0.00 0.00 0.00 1.82
4025 4645 9.410556 CAATCCTACGAATCAAACAAGAAAAAT 57.589 29.630 0.00 0.00 0.00 1.82
4026 4646 8.625651 TCAATCCTACGAATCAAACAAGAAAAA 58.374 29.630 0.00 0.00 0.00 1.94
4027 4647 8.160521 TCAATCCTACGAATCAAACAAGAAAA 57.839 30.769 0.00 0.00 0.00 2.29
4028 4648 7.737972 TCAATCCTACGAATCAAACAAGAAA 57.262 32.000 0.00 0.00 0.00 2.52
4029 4649 7.737972 TTCAATCCTACGAATCAAACAAGAA 57.262 32.000 0.00 0.00 0.00 2.52
4030 4650 7.824289 AGATTCAATCCTACGAATCAAACAAGA 59.176 33.333 13.03 0.00 46.52 3.02
4031 4651 7.978982 AGATTCAATCCTACGAATCAAACAAG 58.021 34.615 13.03 0.00 46.52 3.16
4032 4652 7.921786 AGATTCAATCCTACGAATCAAACAA 57.078 32.000 13.03 0.00 46.52 2.83
4033 4653 7.390440 ACAAGATTCAATCCTACGAATCAAACA 59.610 33.333 13.03 0.00 46.52 2.83
4034 4654 7.752695 ACAAGATTCAATCCTACGAATCAAAC 58.247 34.615 13.03 0.00 46.52 2.93
4035 4655 7.921786 ACAAGATTCAATCCTACGAATCAAA 57.078 32.000 13.03 0.00 46.52 2.69
4036 4656 7.710907 CCTACAAGATTCAATCCTACGAATCAA 59.289 37.037 13.03 0.00 46.52 2.57
4037 4657 7.069455 TCCTACAAGATTCAATCCTACGAATCA 59.931 37.037 13.03 0.00 46.52 2.57
4038 4658 7.434492 TCCTACAAGATTCAATCCTACGAATC 58.566 38.462 0.00 0.00 45.15 2.52
4039 4659 7.361457 TCCTACAAGATTCAATCCTACGAAT 57.639 36.000 0.00 0.00 34.58 3.34
4040 4660 6.785337 TCCTACAAGATTCAATCCTACGAA 57.215 37.500 0.00 0.00 0.00 3.85
4041 4661 6.978674 ATCCTACAAGATTCAATCCTACGA 57.021 37.500 0.00 0.00 0.00 3.43
4042 4662 8.438676 AAAATCCTACAAGATTCAATCCTACG 57.561 34.615 0.00 0.00 35.40 3.51
4066 4686 9.303116 TGCAGTACAAATAAATCCTTAGGAAAA 57.697 29.630 4.56 0.00 34.34 2.29
4067 4687 8.871629 TGCAGTACAAATAAATCCTTAGGAAA 57.128 30.769 4.56 0.00 34.34 3.13
4068 4688 9.474313 AATGCAGTACAAATAAATCCTTAGGAA 57.526 29.630 4.56 0.00 34.34 3.36
4069 4689 9.474313 AAATGCAGTACAAATAAATCCTTAGGA 57.526 29.630 2.37 2.37 35.55 2.94
4070 4690 9.736023 GAAATGCAGTACAAATAAATCCTTAGG 57.264 33.333 0.00 0.00 0.00 2.69
4073 4693 8.584157 TGTGAAATGCAGTACAAATAAATCCTT 58.416 29.630 0.00 0.00 0.00 3.36
4074 4694 8.121305 TGTGAAATGCAGTACAAATAAATCCT 57.879 30.769 0.00 0.00 0.00 3.24
4075 4695 7.489113 CCTGTGAAATGCAGTACAAATAAATCC 59.511 37.037 0.00 0.00 32.41 3.01
4076 4696 8.243426 TCCTGTGAAATGCAGTACAAATAAATC 58.757 33.333 0.00 0.00 32.41 2.17
4077 4697 8.121305 TCCTGTGAAATGCAGTACAAATAAAT 57.879 30.769 0.00 0.00 32.41 1.40
4078 4698 7.517614 TCCTGTGAAATGCAGTACAAATAAA 57.482 32.000 0.00 0.00 32.41 1.40
4079 4699 7.517614 TTCCTGTGAAATGCAGTACAAATAA 57.482 32.000 0.00 0.00 32.41 1.40
4080 4700 7.701539 ATTCCTGTGAAATGCAGTACAAATA 57.298 32.000 0.00 0.00 33.32 1.40
4081 4701 6.594788 ATTCCTGTGAAATGCAGTACAAAT 57.405 33.333 0.00 0.00 33.32 2.32
4082 4702 6.265196 AGAATTCCTGTGAAATGCAGTACAAA 59.735 34.615 0.65 0.00 33.32 2.83
4083 4703 5.769662 AGAATTCCTGTGAAATGCAGTACAA 59.230 36.000 0.65 0.00 33.32 2.41
4084 4704 5.316167 AGAATTCCTGTGAAATGCAGTACA 58.684 37.500 0.65 0.00 33.32 2.90
4085 4705 5.886960 AGAATTCCTGTGAAATGCAGTAC 57.113 39.130 0.65 0.00 33.32 2.73
4086 4706 6.939730 TGTTAGAATTCCTGTGAAATGCAGTA 59.060 34.615 0.65 0.00 33.32 2.74
4087 4707 5.769662 TGTTAGAATTCCTGTGAAATGCAGT 59.230 36.000 0.65 0.00 33.32 4.40
4088 4708 6.258230 TGTTAGAATTCCTGTGAAATGCAG 57.742 37.500 0.65 0.00 33.32 4.41
4089 4709 6.127647 GGATGTTAGAATTCCTGTGAAATGCA 60.128 38.462 0.65 0.00 33.32 3.96
4090 4710 6.127647 TGGATGTTAGAATTCCTGTGAAATGC 60.128 38.462 0.65 0.00 33.32 3.56
4091 4711 7.121759 AGTGGATGTTAGAATTCCTGTGAAATG 59.878 37.037 0.65 0.00 33.32 2.32
4092 4712 7.177878 AGTGGATGTTAGAATTCCTGTGAAAT 58.822 34.615 0.65 0.00 33.32 2.17
4093 4713 6.542821 AGTGGATGTTAGAATTCCTGTGAAA 58.457 36.000 0.65 0.00 33.32 2.69
4094 4714 6.126863 AGTGGATGTTAGAATTCCTGTGAA 57.873 37.500 0.65 0.00 34.33 3.18
4095 4715 5.338381 GGAGTGGATGTTAGAATTCCTGTGA 60.338 44.000 0.65 0.00 0.00 3.58
4096 4716 4.878397 GGAGTGGATGTTAGAATTCCTGTG 59.122 45.833 0.65 0.00 0.00 3.66
4097 4717 4.536090 TGGAGTGGATGTTAGAATTCCTGT 59.464 41.667 0.65 0.00 0.00 4.00
4098 4718 5.102953 TGGAGTGGATGTTAGAATTCCTG 57.897 43.478 0.65 0.00 0.00 3.86
4099 4719 5.501156 GTTGGAGTGGATGTTAGAATTCCT 58.499 41.667 0.65 0.00 0.00 3.36
4100 4720 4.640647 GGTTGGAGTGGATGTTAGAATTCC 59.359 45.833 0.65 0.00 0.00 3.01
4101 4721 5.501156 AGGTTGGAGTGGATGTTAGAATTC 58.499 41.667 0.00 0.00 0.00 2.17
4102 4722 5.251700 AGAGGTTGGAGTGGATGTTAGAATT 59.748 40.000 0.00 0.00 0.00 2.17
4103 4723 4.785376 AGAGGTTGGAGTGGATGTTAGAAT 59.215 41.667 0.00 0.00 0.00 2.40
4104 4724 4.168101 AGAGGTTGGAGTGGATGTTAGAA 58.832 43.478 0.00 0.00 0.00 2.10
4105 4725 3.791320 AGAGGTTGGAGTGGATGTTAGA 58.209 45.455 0.00 0.00 0.00 2.10
4106 4726 4.256920 CAAGAGGTTGGAGTGGATGTTAG 58.743 47.826 0.00 0.00 0.00 2.34
4107 4727 4.286297 CAAGAGGTTGGAGTGGATGTTA 57.714 45.455 0.00 0.00 0.00 2.41
4108 4728 3.146104 CAAGAGGTTGGAGTGGATGTT 57.854 47.619 0.00 0.00 0.00 2.71
4109 4729 2.867109 CAAGAGGTTGGAGTGGATGT 57.133 50.000 0.00 0.00 0.00 3.06
4118 4738 6.218746 CAAAGAATTTCTTCCAAGAGGTTGG 58.781 40.000 11.92 0.00 45.96 3.77
4119 4739 5.693555 GCAAAGAATTTCTTCCAAGAGGTTG 59.306 40.000 11.92 5.03 35.03 3.77
4120 4740 5.600069 AGCAAAGAATTTCTTCCAAGAGGTT 59.400 36.000 11.92 0.00 35.03 3.50
4121 4741 5.143369 AGCAAAGAATTTCTTCCAAGAGGT 58.857 37.500 11.92 2.48 35.03 3.85
4122 4742 5.718724 AGCAAAGAATTTCTTCCAAGAGG 57.281 39.130 11.92 0.00 35.03 3.69
4123 4743 6.644181 GGAAAGCAAAGAATTTCTTCCAAGAG 59.356 38.462 11.92 1.12 35.03 2.85
4124 4744 6.462909 GGGAAAGCAAAGAATTTCTTCCAAGA 60.463 38.462 11.92 0.00 35.03 3.02
4125 4745 5.698089 GGGAAAGCAAAGAATTTCTTCCAAG 59.302 40.000 11.92 4.75 35.03 3.61
4126 4746 5.454613 GGGGAAAGCAAAGAATTTCTTCCAA 60.455 40.000 11.92 0.00 35.03 3.53
4127 4747 4.040339 GGGGAAAGCAAAGAATTTCTTCCA 59.960 41.667 11.92 0.00 35.03 3.53
4128 4748 4.040339 TGGGGAAAGCAAAGAATTTCTTCC 59.960 41.667 11.92 7.86 35.03 3.46
4129 4749 5.213891 TGGGGAAAGCAAAGAATTTCTTC 57.786 39.130 11.92 1.41 35.03 2.87
4130 4750 5.554070 CATGGGGAAAGCAAAGAATTTCTT 58.446 37.500 5.82 5.82 35.03 2.52
4131 4751 4.564199 GCATGGGGAAAGCAAAGAATTTCT 60.564 41.667 0.00 0.00 35.03 2.52
4132 4752 3.686241 GCATGGGGAAAGCAAAGAATTTC 59.314 43.478 0.00 0.00 35.03 2.17
4133 4753 3.559811 GGCATGGGGAAAGCAAAGAATTT 60.560 43.478 0.00 0.00 40.26 1.82
4134 4754 2.026915 GGCATGGGGAAAGCAAAGAATT 60.027 45.455 0.00 0.00 0.00 2.17
4135 4755 1.556451 GGCATGGGGAAAGCAAAGAAT 59.444 47.619 0.00 0.00 0.00 2.40
4136 4756 0.975887 GGCATGGGGAAAGCAAAGAA 59.024 50.000 0.00 0.00 0.00 2.52
4137 4757 0.178938 TGGCATGGGGAAAGCAAAGA 60.179 50.000 0.00 0.00 0.00 2.52
4138 4758 0.037046 GTGGCATGGGGAAAGCAAAG 60.037 55.000 0.00 0.00 0.00 2.77
4139 4759 0.762082 TGTGGCATGGGGAAAGCAAA 60.762 50.000 0.00 0.00 0.00 3.68
4140 4760 0.762082 TTGTGGCATGGGGAAAGCAA 60.762 50.000 0.00 0.00 0.00 3.91
4141 4761 0.544833 ATTGTGGCATGGGGAAAGCA 60.545 50.000 0.00 0.00 0.00 3.91
4142 4762 0.176449 GATTGTGGCATGGGGAAAGC 59.824 55.000 0.00 0.00 0.00 3.51
4143 4763 1.559368 TGATTGTGGCATGGGGAAAG 58.441 50.000 0.00 0.00 0.00 2.62
4144 4764 2.021262 TTGATTGTGGCATGGGGAAA 57.979 45.000 0.00 0.00 0.00 3.13
4145 4765 1.622811 GTTTGATTGTGGCATGGGGAA 59.377 47.619 0.00 0.00 0.00 3.97
4146 4766 1.265236 GTTTGATTGTGGCATGGGGA 58.735 50.000 0.00 0.00 0.00 4.81
4147 4767 0.975135 TGTTTGATTGTGGCATGGGG 59.025 50.000 0.00 0.00 0.00 4.96
4148 4768 2.807392 GTTTGTTTGATTGTGGCATGGG 59.193 45.455 0.00 0.00 0.00 4.00
4149 4769 3.731089 AGTTTGTTTGATTGTGGCATGG 58.269 40.909 0.00 0.00 0.00 3.66
4150 4770 4.370049 TGAGTTTGTTTGATTGTGGCATG 58.630 39.130 0.00 0.00 0.00 4.06
4151 4771 4.669206 TGAGTTTGTTTGATTGTGGCAT 57.331 36.364 0.00 0.00 0.00 4.40
4152 4772 4.462508 TTGAGTTTGTTTGATTGTGGCA 57.537 36.364 0.00 0.00 0.00 4.92
4153 4773 5.050159 GGATTTGAGTTTGTTTGATTGTGGC 60.050 40.000 0.00 0.00 0.00 5.01
4154 4774 6.282930 AGGATTTGAGTTTGTTTGATTGTGG 58.717 36.000 0.00 0.00 0.00 4.17
4157 4777 9.793252 CCTATAGGATTTGAGTTTGTTTGATTG 57.207 33.333 14.11 0.00 37.39 2.67
4158 4778 9.753674 TCCTATAGGATTTGAGTTTGTTTGATT 57.246 29.630 18.00 0.00 39.78 2.57
4159 4779 9.753674 TTCCTATAGGATTTGAGTTTGTTTGAT 57.246 29.630 22.30 0.00 44.98 2.57
4160 4780 9.753674 ATTCCTATAGGATTTGAGTTTGTTTGA 57.246 29.630 22.30 1.79 44.98 2.69
4162 4782 9.190317 GGATTCCTATAGGATTTGAGTTTGTTT 57.810 33.333 22.30 0.00 44.98 2.83
4163 4783 8.336235 TGGATTCCTATAGGATTTGAGTTTGTT 58.664 33.333 22.30 0.00 44.98 2.83
4164 4784 7.872138 TGGATTCCTATAGGATTTGAGTTTGT 58.128 34.615 22.30 0.00 44.98 2.83
4165 4785 8.752005 TTGGATTCCTATAGGATTTGAGTTTG 57.248 34.615 22.30 0.00 44.98 2.93
4166 4786 9.359653 CATTGGATTCCTATAGGATTTGAGTTT 57.640 33.333 22.30 1.62 44.98 2.66
4167 4787 7.946776 CCATTGGATTCCTATAGGATTTGAGTT 59.053 37.037 22.30 2.91 44.98 3.01
4168 4788 7.295672 TCCATTGGATTCCTATAGGATTTGAGT 59.704 37.037 22.30 5.47 44.98 3.41
4169 4789 7.609532 GTCCATTGGATTCCTATAGGATTTGAG 59.390 40.741 22.30 9.20 44.98 3.02
4170 4790 7.073598 TGTCCATTGGATTCCTATAGGATTTGA 59.926 37.037 22.30 7.84 44.98 2.69
4171 4791 7.233632 TGTCCATTGGATTCCTATAGGATTTG 58.766 38.462 22.30 12.75 44.98 2.32
4172 4792 7.406620 TGTCCATTGGATTCCTATAGGATTT 57.593 36.000 22.30 12.85 44.98 2.17
4173 4793 7.408543 CATGTCCATTGGATTCCTATAGGATT 58.591 38.462 22.30 18.23 44.98 3.01
4174 4794 6.579849 GCATGTCCATTGGATTCCTATAGGAT 60.580 42.308 22.30 12.18 44.98 3.24
4175 4795 5.280676 GCATGTCCATTGGATTCCTATAGGA 60.281 44.000 18.00 18.00 43.73 2.94
4176 4796 4.946157 GCATGTCCATTGGATTCCTATAGG 59.054 45.833 13.07 13.07 32.73 2.57
4177 4797 4.946157 GGCATGTCCATTGGATTCCTATAG 59.054 45.833 9.01 0.00 32.73 1.31
4178 4798 4.353489 TGGCATGTCCATTGGATTCCTATA 59.647 41.667 9.01 0.00 40.72 1.31
4179 4799 3.140707 TGGCATGTCCATTGGATTCCTAT 59.859 43.478 9.01 0.00 40.72 2.57
4180 4800 2.513317 TGGCATGTCCATTGGATTCCTA 59.487 45.455 9.01 0.00 40.72 2.94
4181 4801 1.288633 TGGCATGTCCATTGGATTCCT 59.711 47.619 9.01 0.00 40.72 3.36
4182 4802 1.779221 TGGCATGTCCATTGGATTCC 58.221 50.000 9.01 8.33 40.72 3.01
4191 4811 4.096231 CGTAAGATTGAAATGGCATGTCCA 59.904 41.667 14.98 4.46 46.60 4.02
4192 4812 4.096382 ACGTAAGATTGAAATGGCATGTCC 59.904 41.667 14.98 0.00 43.62 4.02
4193 4813 5.235305 ACGTAAGATTGAAATGGCATGTC 57.765 39.130 10.86 10.86 43.62 3.06
4194 4814 5.643379 AACGTAAGATTGAAATGGCATGT 57.357 34.783 0.00 0.00 43.62 3.21
4195 4815 6.034898 GGAAAACGTAAGATTGAAATGGCATG 59.965 38.462 0.00 0.00 43.62 4.06
4196 4816 6.099341 GGAAAACGTAAGATTGAAATGGCAT 58.901 36.000 0.00 0.00 43.62 4.40
4197 4817 5.465935 GGAAAACGTAAGATTGAAATGGCA 58.534 37.500 0.00 0.00 43.62 4.92
4198 4818 4.862574 GGGAAAACGTAAGATTGAAATGGC 59.137 41.667 0.00 0.00 43.62 4.40
4199 4819 6.267496 AGGGAAAACGTAAGATTGAAATGG 57.733 37.500 0.00 0.00 43.62 3.16
4200 4820 9.503427 GAATAGGGAAAACGTAAGATTGAAATG 57.497 33.333 0.00 0.00 43.62 2.32
4201 4821 8.683615 GGAATAGGGAAAACGTAAGATTGAAAT 58.316 33.333 0.00 0.00 43.62 2.17
4202 4822 7.886446 AGGAATAGGGAAAACGTAAGATTGAAA 59.114 33.333 0.00 0.00 43.62 2.69
4203 4823 7.335924 CAGGAATAGGGAAAACGTAAGATTGAA 59.664 37.037 0.00 0.00 43.62 2.69
4204 4824 6.821665 CAGGAATAGGGAAAACGTAAGATTGA 59.178 38.462 0.00 0.00 43.62 2.57
4205 4825 6.598064 ACAGGAATAGGGAAAACGTAAGATTG 59.402 38.462 0.00 0.00 43.62 2.67
4206 4826 6.598064 CACAGGAATAGGGAAAACGTAAGATT 59.402 38.462 0.00 0.00 43.62 2.40
4207 4827 6.113411 CACAGGAATAGGGAAAACGTAAGAT 58.887 40.000 0.00 0.00 43.62 2.40
4208 4828 5.012354 ACACAGGAATAGGGAAAACGTAAGA 59.988 40.000 0.00 0.00 43.62 2.10
4210 4830 5.231702 ACACAGGAATAGGGAAAACGTAA 57.768 39.130 0.00 0.00 0.00 3.18
4211 4831 4.895668 ACACAGGAATAGGGAAAACGTA 57.104 40.909 0.00 0.00 0.00 3.57
4212 4832 3.782656 ACACAGGAATAGGGAAAACGT 57.217 42.857 0.00 0.00 0.00 3.99
4213 4833 5.447624 AAAACACAGGAATAGGGAAAACG 57.552 39.130 0.00 0.00 0.00 3.60
4214 4834 5.465390 GCAAAAACACAGGAATAGGGAAAAC 59.535 40.000 0.00 0.00 0.00 2.43
4215 4835 5.129485 TGCAAAAACACAGGAATAGGGAAAA 59.871 36.000 0.00 0.00 0.00 2.29
4216 4836 4.651503 TGCAAAAACACAGGAATAGGGAAA 59.348 37.500 0.00 0.00 0.00 3.13
4217 4837 4.219115 TGCAAAAACACAGGAATAGGGAA 58.781 39.130 0.00 0.00 0.00 3.97
4218 4838 3.838565 TGCAAAAACACAGGAATAGGGA 58.161 40.909 0.00 0.00 0.00 4.20
4219 4839 4.599047 TTGCAAAAACACAGGAATAGGG 57.401 40.909 0.00 0.00 0.00 3.53
4220 4840 5.047092 AGGATTGCAAAAACACAGGAATAGG 60.047 40.000 1.71 0.00 0.00 2.57
4221 4841 6.029346 AGGATTGCAAAAACACAGGAATAG 57.971 37.500 1.71 0.00 0.00 1.73
4222 4842 6.348950 CGTAGGATTGCAAAAACACAGGAATA 60.349 38.462 1.71 0.00 0.00 1.75
4223 4843 4.961438 AGGATTGCAAAAACACAGGAAT 57.039 36.364 1.71 0.00 0.00 3.01
4224 4844 4.261405 CGTAGGATTGCAAAAACACAGGAA 60.261 41.667 1.71 0.00 0.00 3.36
4225 4845 3.252215 CGTAGGATTGCAAAAACACAGGA 59.748 43.478 1.71 0.00 0.00 3.86
4226 4846 3.252215 TCGTAGGATTGCAAAAACACAGG 59.748 43.478 1.71 0.00 0.00 4.00
4227 4847 4.481930 TCGTAGGATTGCAAAAACACAG 57.518 40.909 1.71 0.00 0.00 3.66
4228 4848 4.902443 TTCGTAGGATTGCAAAAACACA 57.098 36.364 1.71 0.00 0.00 3.72
4229 4849 5.457140 TGATTCGTAGGATTGCAAAAACAC 58.543 37.500 1.71 0.00 0.00 3.32
4230 4850 5.697473 TGATTCGTAGGATTGCAAAAACA 57.303 34.783 1.71 0.00 0.00 2.83
4231 4851 6.861055 TCTTTGATTCGTAGGATTGCAAAAAC 59.139 34.615 1.71 0.00 0.00 2.43
4232 4852 6.976088 TCTTTGATTCGTAGGATTGCAAAAA 58.024 32.000 1.71 0.00 0.00 1.94
4233 4853 6.349280 CCTCTTTGATTCGTAGGATTGCAAAA 60.349 38.462 1.71 0.00 0.00 2.44
4234 4854 5.123820 CCTCTTTGATTCGTAGGATTGCAAA 59.876 40.000 1.71 0.00 0.00 3.68
4235 4855 4.635765 CCTCTTTGATTCGTAGGATTGCAA 59.364 41.667 0.00 0.00 0.00 4.08
4236 4856 4.191544 CCTCTTTGATTCGTAGGATTGCA 58.808 43.478 0.00 0.00 0.00 4.08
4237 4857 3.002759 GCCTCTTTGATTCGTAGGATTGC 59.997 47.826 0.00 0.00 0.00 3.56
4238 4858 4.446371 AGCCTCTTTGATTCGTAGGATTG 58.554 43.478 0.00 0.00 0.00 2.67
4239 4859 4.762289 AGCCTCTTTGATTCGTAGGATT 57.238 40.909 0.00 0.00 0.00 3.01
4240 4860 6.722129 AGTATAGCCTCTTTGATTCGTAGGAT 59.278 38.462 0.00 0.00 0.00 3.24
4241 4861 6.069331 AGTATAGCCTCTTTGATTCGTAGGA 58.931 40.000 0.00 0.00 0.00 2.94
4242 4862 6.334102 AGTATAGCCTCTTTGATTCGTAGG 57.666 41.667 0.00 0.00 0.00 3.18
4243 4863 6.144724 GCAAGTATAGCCTCTTTGATTCGTAG 59.855 42.308 0.00 0.00 0.00 3.51
4244 4864 5.983720 GCAAGTATAGCCTCTTTGATTCGTA 59.016 40.000 0.00 0.00 0.00 3.43
4245 4865 4.811557 GCAAGTATAGCCTCTTTGATTCGT 59.188 41.667 0.00 0.00 0.00 3.85
4246 4866 4.084849 CGCAAGTATAGCCTCTTTGATTCG 60.085 45.833 0.00 0.00 0.00 3.34
4247 4867 4.319118 GCGCAAGTATAGCCTCTTTGATTC 60.319 45.833 0.30 0.00 41.68 2.52
4248 4868 3.561725 GCGCAAGTATAGCCTCTTTGATT 59.438 43.478 0.30 0.00 41.68 2.57
4249 4869 3.134458 GCGCAAGTATAGCCTCTTTGAT 58.866 45.455 0.30 0.00 41.68 2.57
4250 4870 2.093711 TGCGCAAGTATAGCCTCTTTGA 60.094 45.455 8.16 0.00 41.68 2.69
4251 4871 2.279741 TGCGCAAGTATAGCCTCTTTG 58.720 47.619 8.16 0.00 41.68 2.77
4252 4872 2.691409 TGCGCAAGTATAGCCTCTTT 57.309 45.000 8.16 0.00 41.68 2.52
4253 4873 2.918712 ATGCGCAAGTATAGCCTCTT 57.081 45.000 17.11 0.00 42.39 2.85
4295 4915 7.013178 CACATAATAACAATGCCACCATGACTA 59.987 37.037 0.00 0.00 0.00 2.59
4303 4923 7.881643 TGAAAACACATAATAACAATGCCAC 57.118 32.000 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.