Multiple sequence alignment - TraesCS7A01G257100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G257100 chr7A 100.000 7332 0 0 1 7332 246271612 246264281 0.000000e+00 13540.0
1 TraesCS7A01G257100 chr7A 96.510 573 16 2 3922 4493 682197477 682196908 0.000000e+00 944.0
2 TraesCS7A01G257100 chr7A 95.979 572 15 2 3922 4493 560204378 560203815 0.000000e+00 922.0
3 TraesCS7A01G257100 chr7A 92.341 457 26 3 3919 4375 16308612 16309059 6.200000e-180 641.0
4 TraesCS7A01G257100 chr7A 95.722 374 9 4 4490 4858 682196268 682195897 4.900000e-166 595.0
5 TraesCS7A01G257100 chr7A 94.892 372 11 5 4490 4856 560203177 560202809 6.380000e-160 575.0
6 TraesCS7A01G257100 chr7A 88.679 371 25 12 4500 4855 16309445 16309813 3.140000e-118 436.0
7 TraesCS7A01G257100 chr7A 97.196 107 3 0 1953 2059 619573673 619573567 1.620000e-41 182.0
8 TraesCS7A01G257100 chr7A 96.330 109 4 0 1951 2059 25411002 25411110 5.840000e-41 180.0
9 TraesCS7A01G257100 chr7D 94.083 1859 67 14 4854 6671 232814412 232816268 0.000000e+00 2784.0
10 TraesCS7A01G257100 chr7D 91.955 1964 120 16 1 1954 232810541 232812476 0.000000e+00 2717.0
11 TraesCS7A01G257100 chr7D 92.853 1861 72 21 2085 3925 232812593 232814412 0.000000e+00 2643.0
12 TraesCS7A01G257100 chr7D 91.489 188 10 2 5550 5732 243814752 243814938 3.400000e-63 254.0
13 TraesCS7A01G257100 chr7B 93.775 1751 80 16 4854 6584 203743429 203745170 0.000000e+00 2603.0
14 TraesCS7A01G257100 chr7B 91.002 1367 70 28 2569 3925 203742106 203743429 0.000000e+00 1794.0
15 TraesCS7A01G257100 chr7B 94.778 766 31 7 555 1317 203740236 203740995 0.000000e+00 1184.0
16 TraesCS7A01G257100 chr7B 91.648 455 24 8 2085 2536 203741663 203742106 1.050000e-172 617.0
17 TraesCS7A01G257100 chr7B 85.481 551 42 14 1 549 203739365 203739879 2.330000e-149 540.0
18 TraesCS7A01G257100 chr7B 86.842 456 24 13 1356 1802 203740997 203741425 1.850000e-130 477.0
19 TraesCS7A01G257100 chr7B 91.216 296 24 1 3923 4218 746182825 746183118 1.150000e-107 401.0
20 TraesCS7A01G257100 chr2A 95.527 626 19 6 6713 7332 724290542 724291164 0.000000e+00 992.0
21 TraesCS7A01G257100 chr2A 96.330 109 4 0 1951 2059 763687461 763687569 5.840000e-41 180.0
22 TraesCS7A01G257100 chr2A 89.286 112 10 2 1087 1197 458051223 458051333 9.920000e-29 139.0
23 TraesCS7A01G257100 chr1A 92.574 606 21 5 6747 7332 386480891 386481492 0.000000e+00 848.0
24 TraesCS7A01G257100 chr1A 95.536 112 4 1 1948 2059 366271049 366270939 2.100000e-40 178.0
25 TraesCS7A01G257100 chr1A 84.242 165 20 3 365 526 590554016 590553855 9.850000e-34 156.0
26 TraesCS7A01G257100 chr1A 81.579 76 11 3 3923 3997 241656422 241656349 7.940000e-05 60.2
27 TraesCS7A01G257100 chr5A 91.667 624 22 8 6732 7332 564435956 564435340 0.000000e+00 837.0
28 TraesCS7A01G257100 chr5A 94.262 122 7 0 1953 2074 169309776 169309897 3.490000e-43 187.0
29 TraesCS7A01G257100 chr3D 87.544 570 32 17 3922 4490 39160614 39161145 2.250000e-174 623.0
30 TraesCS7A01G257100 chr3D 88.845 251 16 7 4607 4852 39186706 39186949 1.550000e-76 298.0
31 TraesCS7A01G257100 chr4A 83.706 626 53 14 6710 7332 474753032 474752453 5.000000e-151 545.0
32 TraesCS7A01G257100 chr5B 90.704 355 29 1 3925 4279 470714114 470713764 3.100000e-128 470.0
33 TraesCS7A01G257100 chrUn 96.396 111 3 1 1949 2059 218481709 218481600 1.620000e-41 182.0
34 TraesCS7A01G257100 chrUn 92.424 66 5 0 6711 6776 310738420 310738485 2.180000e-15 95.3
35 TraesCS7A01G257100 chr6A 96.330 109 4 0 1952 2060 150232055 150231947 5.840000e-41 180.0
36 TraesCS7A01G257100 chr5D 94.690 113 6 0 1948 2060 547442036 547442148 7.560000e-40 176.0
37 TraesCS7A01G257100 chr3A 88.806 134 12 3 1951 2084 235837116 235837246 2.120000e-35 161.0
38 TraesCS7A01G257100 chr3A 90.541 74 5 2 4784 4856 57018300 57018228 6.050000e-16 97.1
39 TraesCS7A01G257100 chr3A 88.608 79 8 1 4785 4863 371675922 371675845 2.180000e-15 95.3
40 TraesCS7A01G257100 chr2D 90.179 112 9 2 1087 1197 345626689 345626579 2.130000e-30 145.0
41 TraesCS7A01G257100 chr1D 87.156 109 14 0 6713 6821 466009134 466009026 2.780000e-24 124.0
42 TraesCS7A01G257100 chr1D 93.443 61 3 1 6712 6772 437689158 437689099 1.010000e-13 89.8
43 TraesCS7A01G257100 chr2B 91.250 80 7 0 382 461 55203871 55203792 7.780000e-20 110.0
44 TraesCS7A01G257100 chr2B 93.651 63 1 2 6713 6774 796103852 796103792 2.820000e-14 91.6
45 TraesCS7A01G257100 chr4B 87.059 85 10 1 4771 4855 320086691 320086608 2.180000e-15 95.3
46 TraesCS7A01G257100 chr4B 88.333 60 5 2 3908 3967 665355737 665355794 3.670000e-08 71.3
47 TraesCS7A01G257100 chr3B 92.424 66 5 0 6711 6776 820509398 820509463 2.180000e-15 95.3
48 TraesCS7A01G257100 chr3B 91.667 48 4 0 4715 4762 660791798 660791845 4.750000e-07 67.6
49 TraesCS7A01G257100 chr4D 83.495 103 11 5 6722 6821 132919123 132919222 2.820000e-14 91.6
50 TraesCS7A01G257100 chr1B 93.103 58 4 0 6710 6767 57084142 57084199 1.310000e-12 86.1
51 TraesCS7A01G257100 chr6D 100.000 39 0 0 3925 3963 362969834 362969796 1.020000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G257100 chr7A 246264281 246271612 7331 True 13540.000000 13540 100.000000 1 7332 1 chr7A.!!$R1 7331
1 TraesCS7A01G257100 chr7A 682195897 682197477 1580 True 769.500000 944 96.116000 3922 4858 2 chr7A.!!$R4 936
2 TraesCS7A01G257100 chr7A 560202809 560204378 1569 True 748.500000 922 95.435500 3922 4856 2 chr7A.!!$R3 934
3 TraesCS7A01G257100 chr7A 16308612 16309813 1201 False 538.500000 641 90.510000 3919 4855 2 chr7A.!!$F2 936
4 TraesCS7A01G257100 chr7D 232810541 232816268 5727 False 2714.666667 2784 92.963667 1 6671 3 chr7D.!!$F2 6670
5 TraesCS7A01G257100 chr7B 203739365 203745170 5805 False 1202.500000 2603 90.587667 1 6584 6 chr7B.!!$F2 6583
6 TraesCS7A01G257100 chr2A 724290542 724291164 622 False 992.000000 992 95.527000 6713 7332 1 chr2A.!!$F2 619
7 TraesCS7A01G257100 chr1A 386480891 386481492 601 False 848.000000 848 92.574000 6747 7332 1 chr1A.!!$F1 585
8 TraesCS7A01G257100 chr5A 564435340 564435956 616 True 837.000000 837 91.667000 6732 7332 1 chr5A.!!$R1 600
9 TraesCS7A01G257100 chr3D 39160614 39161145 531 False 623.000000 623 87.544000 3922 4490 1 chr3D.!!$F1 568
10 TraesCS7A01G257100 chr4A 474752453 474753032 579 True 545.000000 545 83.706000 6710 7332 1 chr4A.!!$R1 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.171679 TTGGATTGCATCTTGCTGCG 59.828 50.000 0.75 0.00 45.31 5.18 F
679 1033 0.174617 GGAGAGGCTCCGAAAGACAG 59.825 60.000 11.71 0.00 41.08 3.51 F
2075 2447 0.521291 GTAGCAAATTGCCAGTGCGA 59.479 50.000 15.04 0.00 46.52 5.10 F
2621 3123 0.325272 TTTGGCTGGTGCGGTACATA 59.675 50.000 0.00 0.00 40.82 2.29 F
3526 4049 0.181114 AACCTGCTGAGAGTGTTGCA 59.819 50.000 0.00 0.00 0.00 4.08 F
4377 4901 1.005097 TCATGAGAAGCTTGCATGGGT 59.995 47.619 26.38 2.72 39.76 4.51 F
5641 6835 1.227674 CGGCTTCTCTATGGTGCCC 60.228 63.158 0.00 0.00 40.40 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1266 1622 0.393808 TGAATCCTAAAGCGGGGCAC 60.394 55.000 0.00 0.0 0.00 5.01 R
2342 2806 0.106819 ATCCTCAGCCAACAGGATGC 60.107 55.000 0.00 0.0 46.16 3.91 R
3139 3654 1.032014 CATTGGCCGGAATAGTTGGG 58.968 55.000 5.05 0.0 0.00 4.12 R
4336 4860 1.078823 TCTACCCTGCCTTCTTCCTGA 59.921 52.381 0.00 0.0 0.00 3.86 R
4695 5875 0.038159 ACGCACAGAAGACTAGCACC 60.038 55.000 0.00 0.0 0.00 5.01 R
5667 6861 0.106268 TGAACTTTGCAGCCTGGGAA 60.106 50.000 0.00 0.0 0.00 3.97 R
6614 7840 0.038251 ATGAGACGTTCAAGCAGCGA 60.038 50.000 0.00 0.0 39.77 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.866483 ATCTCCAGTGGGCATTGGCA 61.866 55.000 9.92 0.00 43.71 4.92
39 40 1.075212 TGGCATCATCACCCAAACTGA 59.925 47.619 0.00 0.00 0.00 3.41
53 54 4.240096 CCAAACTGAAGGCAATCAACATC 58.760 43.478 0.00 0.00 0.00 3.06
103 104 2.362369 ACCAGCATCGACTCCCCTG 61.362 63.158 0.00 0.00 0.00 4.45
136 137 0.171679 TTGGATTGCATCTTGCTGCG 59.828 50.000 0.75 0.00 45.31 5.18
150 151 0.809241 GCTGCGATGCTAGCTGAAGT 60.809 55.000 17.23 0.00 36.99 3.01
156 157 3.039405 CGATGCTAGCTGAAGTACTTCG 58.961 50.000 26.35 21.56 42.28 3.79
171 172 6.780706 AGTACTTCGTTTACAAGAACCATG 57.219 37.500 0.00 0.00 0.00 3.66
189 190 4.051922 CCATGTTTCTACACGGATAGCTC 58.948 47.826 0.00 0.00 40.02 4.09
194 195 2.573369 TCTACACGGATAGCTCTGTCC 58.427 52.381 0.00 2.92 39.02 4.02
239 240 1.409802 CCATCTTCAAGGATGCAGGCT 60.410 52.381 0.00 0.00 41.04 4.58
274 275 4.028490 ACCCTTGCGGCCATTCGA 62.028 61.111 2.24 0.00 33.26 3.71
277 278 1.819208 CCTTGCGGCCATTCGATCA 60.819 57.895 2.24 0.00 0.00 2.92
282 283 1.372683 CGGCCATTCGATCATCCCT 59.627 57.895 2.24 0.00 0.00 4.20
300 301 3.075283 TCCCTAACTTTCCATTCCAGCAA 59.925 43.478 0.00 0.00 0.00 3.91
315 316 2.422479 CCAGCAAGACCAATCATGTCAG 59.578 50.000 0.00 0.00 35.15 3.51
318 319 4.880120 CAGCAAGACCAATCATGTCAGTAT 59.120 41.667 0.00 0.00 35.15 2.12
339 340 9.025020 CAGTATGCACTATAATATTAAGGCTCG 57.975 37.037 0.00 0.00 32.21 5.03
346 347 7.010552 CACTATAATATTAAGGCTCGCCATCAC 59.989 40.741 11.02 0.00 38.92 3.06
370 371 5.464168 GCAAAGCTAGCTCTCAAAATTCAA 58.536 37.500 19.65 0.00 0.00 2.69
460 463 3.007940 CCCTGTCAAGTGTGAGTCCATTA 59.992 47.826 0.00 0.00 33.27 1.90
461 464 4.248859 CCTGTCAAGTGTGAGTCCATTAG 58.751 47.826 0.00 0.00 33.27 1.73
504 507 8.477984 TGTTGCTAATGGAATAAAAATCTTGC 57.522 30.769 0.00 0.00 0.00 4.01
543 546 9.857656 AAGGAAAGATTTGAGCTCATATTATGA 57.142 29.630 19.04 6.23 37.76 2.15
553 907 6.148315 TGAGCTCATATTATGAAAAGATGGCG 59.852 38.462 13.74 0.00 39.11 5.69
628 982 9.014297 TCTAGAAGGTCCTTTGAATTCAATTTC 57.986 33.333 21.10 15.85 35.55 2.17
633 987 5.481824 GGTCCTTTGAATTCAATTTCCTCCT 59.518 40.000 21.10 0.00 35.55 3.69
679 1033 0.174617 GGAGAGGCTCCGAAAGACAG 59.825 60.000 11.71 0.00 41.08 3.51
716 1070 1.133025 CTGTGCGTGGGGATTTGAATC 59.867 52.381 0.00 0.00 34.66 2.52
785 1139 2.389962 TACGATGCTACCCACCAAAC 57.610 50.000 0.00 0.00 0.00 2.93
818 1173 2.545742 GCTGCCGTTCACTTTCCATTTT 60.546 45.455 0.00 0.00 0.00 1.82
820 1175 3.712187 TGCCGTTCACTTTCCATTTTTC 58.288 40.909 0.00 0.00 0.00 2.29
821 1176 3.383185 TGCCGTTCACTTTCCATTTTTCT 59.617 39.130 0.00 0.00 0.00 2.52
822 1177 4.580995 TGCCGTTCACTTTCCATTTTTCTA 59.419 37.500 0.00 0.00 0.00 2.10
823 1178 5.067936 TGCCGTTCACTTTCCATTTTTCTAA 59.932 36.000 0.00 0.00 0.00 2.10
825 1180 6.308041 GCCGTTCACTTTCCATTTTTCTAATC 59.692 38.462 0.00 0.00 0.00 1.75
895 1251 1.670590 CTCATCATCTCCCCCTCGC 59.329 63.158 0.00 0.00 0.00 5.03
991 1347 2.304180 ACAAACCTCAGATCTCACCCAG 59.696 50.000 0.00 0.00 0.00 4.45
1158 1514 2.660064 GCTCAAGGAGGGCGAAGGA 61.660 63.158 0.00 0.00 0.00 3.36
1206 1562 1.027357 TCGAAGGTATCCGCACTACC 58.973 55.000 0.00 0.00 39.18 3.18
1218 1574 1.471287 CGCACTACCACTGCTACAGTA 59.529 52.381 0.00 0.00 43.43 2.74
1239 1595 1.945387 TCCTCTCAAATCGCAGATGC 58.055 50.000 0.00 0.00 45.12 3.91
1266 1622 1.874019 CGCAGTTCGATCCAGTCCG 60.874 63.158 0.00 0.00 41.67 4.79
1334 1690 7.890655 AGCTAGTGGACAAATTAGGAGAAAAAT 59.109 33.333 0.00 0.00 0.00 1.82
1350 1706 7.384387 AGGAGAAAAATTTGTACGAGTAGACAC 59.616 37.037 0.00 0.00 0.00 3.67
1368 1724 1.995484 CACCTTGTCTCACGCTGTATG 59.005 52.381 0.00 0.00 0.00 2.39
1386 1742 6.749118 GCTGTATGGTCTGTCAATTTTGAATC 59.251 38.462 0.00 0.00 39.21 2.52
1493 1849 6.365520 AGTGGTGAAACTAGGAGAAAATTGT 58.634 36.000 0.00 0.00 36.74 2.71
1506 1862 8.879342 AGGAGAAAATTGTATATGACTTCTCG 57.121 34.615 0.00 0.00 36.88 4.04
1540 1896 8.998377 TCATCTGTGAAGTTCGAATCATTTTTA 58.002 29.630 0.00 0.00 0.00 1.52
1550 1906 8.522830 AGTTCGAATCATTTTTATGACATGGTT 58.477 29.630 0.00 0.00 32.79 3.67
1619 1989 7.229581 AGTTAGTGGTGAAACTAGGAGTAAG 57.770 40.000 0.00 0.00 34.23 2.34
1643 2013 2.510238 ACGGCTTCGCTCATGCTC 60.510 61.111 0.00 0.00 37.41 4.26
1724 2095 9.618890 ATGTGACATTATGCTAGTTTGATTAGT 57.381 29.630 0.00 0.00 0.00 2.24
1725 2096 9.448438 TGTGACATTATGCTAGTTTGATTAGTT 57.552 29.630 0.00 0.00 0.00 2.24
1810 2181 6.237901 TGCTGTGGAAAGTGTACTTTATGAT 58.762 36.000 9.78 0.00 45.37 2.45
1846 2218 3.186409 GCGGATAGCGCTTGAATAATGAA 59.814 43.478 18.68 0.00 35.41 2.57
1853 2225 5.510671 AGCGCTTGAATAATGAAATAACGG 58.489 37.500 2.64 0.00 0.00 4.44
1885 2257 7.479352 TTTGAATGAAATTGCTCATTAGGGA 57.521 32.000 5.53 0.00 44.29 4.20
1910 2282 4.775058 TTATTATTGTTGCCGTTGCTGT 57.225 36.364 0.00 0.00 38.71 4.40
1916 2288 0.865639 GTTGCCGTTGCTGTTGTGTC 60.866 55.000 0.00 0.00 38.71 3.67
1952 2324 7.016563 TCCATGCCTGAACAGATTATGTATACT 59.983 37.037 4.17 0.00 43.00 2.12
1953 2325 8.314021 CCATGCCTGAACAGATTATGTATACTA 58.686 37.037 4.17 0.00 43.00 1.82
1954 2326 9.144747 CATGCCTGAACAGATTATGTATACTAC 57.855 37.037 4.17 0.00 43.00 2.73
1955 2327 8.478775 TGCCTGAACAGATTATGTATACTACT 57.521 34.615 4.17 0.00 43.00 2.57
1956 2328 8.577296 TGCCTGAACAGATTATGTATACTACTC 58.423 37.037 4.17 0.00 43.00 2.59
1957 2329 8.030106 GCCTGAACAGATTATGTATACTACTCC 58.970 40.741 4.17 0.00 43.00 3.85
1958 2330 8.524487 CCTGAACAGATTATGTATACTACTCCC 58.476 40.741 4.17 0.00 43.00 4.30
1959 2331 9.303116 CTGAACAGATTATGTATACTACTCCCT 57.697 37.037 4.17 0.00 43.00 4.20
1960 2332 9.298250 TGAACAGATTATGTATACTACTCCCTC 57.702 37.037 4.17 0.00 43.00 4.30
1961 2333 8.653036 AACAGATTATGTATACTACTCCCTCC 57.347 38.462 4.17 0.00 43.00 4.30
1962 2334 6.885376 ACAGATTATGTATACTACTCCCTCCG 59.115 42.308 4.17 0.00 41.60 4.63
1963 2335 6.885376 CAGATTATGTATACTACTCCCTCCGT 59.115 42.308 4.17 0.00 0.00 4.69
1964 2336 7.393796 CAGATTATGTATACTACTCCCTCCGTT 59.606 40.741 4.17 0.00 0.00 4.44
1965 2337 7.611079 AGATTATGTATACTACTCCCTCCGTTC 59.389 40.741 4.17 0.00 0.00 3.95
1966 2338 4.785346 TGTATACTACTCCCTCCGTTCT 57.215 45.455 4.17 0.00 0.00 3.01
1967 2339 5.894298 TGTATACTACTCCCTCCGTTCTA 57.106 43.478 4.17 0.00 0.00 2.10
1968 2340 6.252599 TGTATACTACTCCCTCCGTTCTAA 57.747 41.667 4.17 0.00 0.00 2.10
1969 2341 6.662755 TGTATACTACTCCCTCCGTTCTAAA 58.337 40.000 4.17 0.00 0.00 1.85
1970 2342 7.293073 TGTATACTACTCCCTCCGTTCTAAAT 58.707 38.462 4.17 0.00 0.00 1.40
1971 2343 7.781693 TGTATACTACTCCCTCCGTTCTAAATT 59.218 37.037 4.17 0.00 0.00 1.82
1972 2344 9.289782 GTATACTACTCCCTCCGTTCTAAATTA 57.710 37.037 0.00 0.00 0.00 1.40
1973 2345 6.462552 ACTACTCCCTCCGTTCTAAATTAC 57.537 41.667 0.00 0.00 0.00 1.89
1974 2346 6.193504 ACTACTCCCTCCGTTCTAAATTACT 58.806 40.000 0.00 0.00 0.00 2.24
1975 2347 5.595257 ACTCCCTCCGTTCTAAATTACTC 57.405 43.478 0.00 0.00 0.00 2.59
1976 2348 4.097589 ACTCCCTCCGTTCTAAATTACTCG 59.902 45.833 0.00 0.00 0.00 4.18
1977 2349 4.019174 TCCCTCCGTTCTAAATTACTCGT 58.981 43.478 0.00 0.00 0.00 4.18
1978 2350 4.096984 TCCCTCCGTTCTAAATTACTCGTC 59.903 45.833 0.00 0.00 0.00 4.20
1979 2351 4.033684 CCTCCGTTCTAAATTACTCGTCG 58.966 47.826 0.00 0.00 0.00 5.12
1980 2352 4.437930 CCTCCGTTCTAAATTACTCGTCGT 60.438 45.833 0.00 0.00 0.00 4.34
1981 2353 5.220662 CCTCCGTTCTAAATTACTCGTCGTA 60.221 44.000 0.00 0.00 0.00 3.43
1982 2354 5.799960 TCCGTTCTAAATTACTCGTCGTAG 58.200 41.667 0.00 0.00 0.00 3.51
1983 2355 5.580691 TCCGTTCTAAATTACTCGTCGTAGA 59.419 40.000 0.00 0.00 0.00 2.59
1984 2356 6.092122 TCCGTTCTAAATTACTCGTCGTAGAA 59.908 38.462 0.00 0.00 39.69 2.10
1985 2357 6.742718 CCGTTCTAAATTACTCGTCGTAGAAA 59.257 38.462 0.00 0.00 39.69 2.52
1986 2358 7.430502 CCGTTCTAAATTACTCGTCGTAGAAAT 59.569 37.037 0.00 0.00 39.69 2.17
1987 2359 8.251114 CGTTCTAAATTACTCGTCGTAGAAATG 58.749 37.037 0.00 0.00 39.69 2.32
1988 2360 8.529911 GTTCTAAATTACTCGTCGTAGAAATGG 58.470 37.037 0.00 0.00 39.69 3.16
1989 2361 7.988737 TCTAAATTACTCGTCGTAGAAATGGA 58.011 34.615 0.00 0.00 39.69 3.41
1990 2362 8.627403 TCTAAATTACTCGTCGTAGAAATGGAT 58.373 33.333 0.00 0.00 39.69 3.41
1991 2363 7.464830 AAATTACTCGTCGTAGAAATGGATG 57.535 36.000 0.00 0.00 39.69 3.51
1992 2364 5.571784 TTACTCGTCGTAGAAATGGATGT 57.428 39.130 0.00 0.00 39.69 3.06
1993 2365 6.682423 TTACTCGTCGTAGAAATGGATGTA 57.318 37.500 0.00 0.00 39.69 2.29
1994 2366 5.769484 ACTCGTCGTAGAAATGGATGTAT 57.231 39.130 0.00 0.00 39.69 2.29
1995 2367 5.759963 ACTCGTCGTAGAAATGGATGTATC 58.240 41.667 0.00 0.00 39.69 2.24
1996 2368 5.531659 ACTCGTCGTAGAAATGGATGTATCT 59.468 40.000 0.00 0.00 39.69 1.98
1997 2369 6.709397 ACTCGTCGTAGAAATGGATGTATCTA 59.291 38.462 0.00 0.00 39.69 1.98
1998 2370 7.095144 ACTCGTCGTAGAAATGGATGTATCTAG 60.095 40.741 0.00 0.00 39.69 2.43
1999 2371 6.932960 TCGTCGTAGAAATGGATGTATCTAGA 59.067 38.462 0.00 0.00 39.69 2.43
2000 2372 7.443272 TCGTCGTAGAAATGGATGTATCTAGAA 59.557 37.037 0.00 0.00 39.69 2.10
2001 2373 7.534578 CGTCGTAGAAATGGATGTATCTAGAAC 59.465 40.741 0.00 0.00 39.69 3.01
2002 2374 8.569641 GTCGTAGAAATGGATGTATCTAGAACT 58.430 37.037 0.00 0.00 39.69 3.01
2003 2375 9.788889 TCGTAGAAATGGATGTATCTAGAACTA 57.211 33.333 0.00 0.00 0.00 2.24
2033 2405 8.637196 ACATCTAGATACATCCATTTCTACGA 57.363 34.615 4.54 0.00 0.00 3.43
2034 2406 8.516234 ACATCTAGATACATCCATTTCTACGAC 58.484 37.037 4.54 0.00 0.00 4.34
2035 2407 7.130303 TCTAGATACATCCATTTCTACGACG 57.870 40.000 0.00 0.00 0.00 5.12
2036 2408 6.932960 TCTAGATACATCCATTTCTACGACGA 59.067 38.462 0.00 0.00 0.00 4.20
2037 2409 6.003234 AGATACATCCATTTCTACGACGAG 57.997 41.667 0.00 0.00 0.00 4.18
2038 2410 5.531659 AGATACATCCATTTCTACGACGAGT 59.468 40.000 0.00 0.00 0.00 4.18
2039 2411 6.709397 AGATACATCCATTTCTACGACGAGTA 59.291 38.462 0.00 0.00 0.00 2.59
2040 2412 5.571784 ACATCCATTTCTACGACGAGTAA 57.428 39.130 0.00 0.00 34.45 2.24
2041 2413 6.145338 ACATCCATTTCTACGACGAGTAAT 57.855 37.500 0.00 0.00 34.45 1.89
2042 2414 6.570692 ACATCCATTTCTACGACGAGTAATT 58.429 36.000 0.00 0.00 34.45 1.40
2043 2415 7.039882 ACATCCATTTCTACGACGAGTAATTT 58.960 34.615 0.00 0.00 34.45 1.82
2044 2416 6.880822 TCCATTTCTACGACGAGTAATTTG 57.119 37.500 0.00 0.00 34.45 2.32
2045 2417 5.808540 TCCATTTCTACGACGAGTAATTTGG 59.191 40.000 0.00 0.59 34.45 3.28
2046 2418 5.808540 CCATTTCTACGACGAGTAATTTGGA 59.191 40.000 0.00 0.00 34.45 3.53
2047 2419 6.311935 CCATTTCTACGACGAGTAATTTGGAA 59.688 38.462 0.00 0.00 34.45 3.53
2048 2420 6.695292 TTTCTACGACGAGTAATTTGGAAC 57.305 37.500 0.00 0.00 34.45 3.62
2049 2421 4.406069 TCTACGACGAGTAATTTGGAACG 58.594 43.478 0.00 0.00 34.45 3.95
2050 2422 2.331194 ACGACGAGTAATTTGGAACGG 58.669 47.619 0.00 0.00 0.00 4.44
2051 2423 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2052 2424 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2053 2425 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2054 2426 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2055 2427 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2056 2428 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2075 2447 0.521291 GTAGCAAATTGCCAGTGCGA 59.479 50.000 15.04 0.00 46.52 5.10
2076 2448 1.068610 GTAGCAAATTGCCAGTGCGAA 60.069 47.619 15.04 0.00 46.52 4.70
2153 2615 3.495331 GCTGATCTGGAGATACTGAGGA 58.505 50.000 1.46 0.00 34.37 3.71
2170 2632 3.318839 TGAGGAGTTTTCTGCAAATGTGG 59.681 43.478 0.00 0.00 40.83 4.17
2215 2678 8.789881 TTTCAAAATTACCACAAGTTACATCG 57.210 30.769 0.00 0.00 0.00 3.84
2226 2689 1.677576 AGTTACATCGCATGCATTGGG 59.322 47.619 19.57 0.14 39.56 4.12
2275 2739 4.033702 CGATGACAGAAACACCATCATCAG 59.966 45.833 11.79 2.95 43.82 2.90
2280 2744 2.821969 AGAAACACCATCATCAGCAACC 59.178 45.455 0.00 0.00 0.00 3.77
2298 2762 6.533723 CAGCAACCGAGTTTTATATGAGTGTA 59.466 38.462 0.00 0.00 0.00 2.90
2299 2763 7.224753 CAGCAACCGAGTTTTATATGAGTGTAT 59.775 37.037 0.00 0.00 0.00 2.29
2300 2764 7.769044 AGCAACCGAGTTTTATATGAGTGTATT 59.231 33.333 0.00 0.00 0.00 1.89
2301 2765 8.395633 GCAACCGAGTTTTATATGAGTGTATTT 58.604 33.333 0.00 0.00 0.00 1.40
2365 2829 1.704628 TCCTGTTGGCTGAGGATTTGA 59.295 47.619 0.00 0.00 33.18 2.69
2395 2859 3.591196 TTTTGGCTGATGTACCATTGC 57.409 42.857 0.00 0.00 35.42 3.56
2402 2866 3.789791 GCTGATGTACCATTGCGTTGATG 60.790 47.826 0.00 0.00 0.00 3.07
2446 2910 5.048013 CACCCTCCTTGATGGTAAAAAGTTC 60.048 44.000 0.00 0.00 37.07 3.01
2558 3022 9.927081 ATGTATTCTCATTTTTGGATAAGGTCT 57.073 29.630 0.00 0.00 0.00 3.85
2559 3023 9.753674 TGTATTCTCATTTTTGGATAAGGTCTT 57.246 29.630 0.00 0.00 0.00 3.01
2561 3025 8.655935 ATTCTCATTTTTGGATAAGGTCTTGT 57.344 30.769 0.00 0.00 0.00 3.16
2562 3026 9.753674 ATTCTCATTTTTGGATAAGGTCTTGTA 57.246 29.630 0.00 0.00 0.00 2.41
2563 3027 9.581289 TTCTCATTTTTGGATAAGGTCTTGTAA 57.419 29.630 0.00 0.00 0.00 2.41
2564 3028 9.581289 TCTCATTTTTGGATAAGGTCTTGTAAA 57.419 29.630 0.00 0.00 0.00 2.01
2565 3029 9.626045 CTCATTTTTGGATAAGGTCTTGTAAAC 57.374 33.333 0.00 0.00 0.00 2.01
2566 3030 8.293867 TCATTTTTGGATAAGGTCTTGTAAACG 58.706 33.333 0.00 0.00 0.00 3.60
2567 3031 7.804843 TTTTTGGATAAGGTCTTGTAAACGA 57.195 32.000 0.00 0.00 0.00 3.85
2579 3078 6.797033 GGTCTTGTAAACGATTTGATTGTGAG 59.203 38.462 0.00 0.00 0.00 3.51
2620 3122 0.960364 CTTTGGCTGGTGCGGTACAT 60.960 55.000 0.00 0.00 40.82 2.29
2621 3123 0.325272 TTTGGCTGGTGCGGTACATA 59.675 50.000 0.00 0.00 40.82 2.29
2622 3124 0.325272 TTGGCTGGTGCGGTACATAA 59.675 50.000 0.00 0.00 40.82 1.90
2691 3193 2.026822 ACGATCCTTCATTTGACAGGCT 60.027 45.455 0.00 0.00 0.00 4.58
2733 3239 3.066760 GCTTGTGTGCTAAACAACTTCCT 59.933 43.478 0.00 0.00 41.57 3.36
2742 3248 0.877071 AACAACTTCCTGCGAGCATG 59.123 50.000 0.00 0.00 0.00 4.06
2764 3270 3.057315 GTGAGCTTTGGTAATGTGCACAT 60.057 43.478 26.61 26.61 38.41 3.21
2766 3272 1.994779 GCTTTGGTAATGTGCACATGC 59.005 47.619 31.98 25.18 36.56 4.06
2778 3285 2.953466 GCACATGCAATCACCATTCT 57.047 45.000 0.00 0.00 41.59 2.40
2810 3317 3.062763 CTGGACTGTAGTTGCTTGACAG 58.937 50.000 0.00 0.00 44.98 3.51
2838 3345 4.119862 GCTGATGACCGACTAAATGCTAA 58.880 43.478 0.00 0.00 0.00 3.09
2903 3410 5.628193 TCTTTCTTTAGTTTAGTCACGCTCG 59.372 40.000 0.00 0.00 0.00 5.03
2914 3421 7.543172 AGTTTAGTCACGCTCGTCATTTATTAA 59.457 33.333 0.00 0.00 0.00 1.40
2915 3422 7.997107 TTAGTCACGCTCGTCATTTATTAAT 57.003 32.000 0.00 0.00 0.00 1.40
2916 3423 6.903883 AGTCACGCTCGTCATTTATTAATT 57.096 33.333 0.00 0.00 0.00 1.40
2917 3424 7.997107 AGTCACGCTCGTCATTTATTAATTA 57.003 32.000 0.00 0.00 0.00 1.40
2918 3425 8.589335 AGTCACGCTCGTCATTTATTAATTAT 57.411 30.769 0.00 0.00 0.00 1.28
2919 3426 9.042008 AGTCACGCTCGTCATTTATTAATTATT 57.958 29.630 0.00 0.00 0.00 1.40
2991 3506 5.754782 TGGGATTGCACATTCTAGTGTATT 58.245 37.500 0.00 0.00 41.52 1.89
3064 3579 1.238615 AGGGATGGGATCAAGGCATT 58.761 50.000 0.00 0.00 0.00 3.56
3091 3606 3.261390 CCATGAAGAAAGGGGAAAATGCA 59.739 43.478 0.00 0.00 0.00 3.96
3340 3861 3.248024 TCCTATCGCATGTATTCCCCTT 58.752 45.455 0.00 0.00 0.00 3.95
3341 3862 3.260884 TCCTATCGCATGTATTCCCCTTC 59.739 47.826 0.00 0.00 0.00 3.46
3342 3863 3.261897 CCTATCGCATGTATTCCCCTTCT 59.738 47.826 0.00 0.00 0.00 2.85
3349 3870 5.532557 GCATGTATTCCCCTTCTTATTTGC 58.467 41.667 0.00 0.00 0.00 3.68
3355 3876 3.613030 TCCCCTTCTTATTTGCGTAACC 58.387 45.455 0.00 0.00 0.00 2.85
3359 3880 3.680937 CCTTCTTATTTGCGTAACCGACA 59.319 43.478 0.00 0.00 35.63 4.35
3407 3930 0.471191 TCGGCTCGAGGATGGTACTA 59.529 55.000 15.58 0.00 0.00 1.82
3456 3979 8.243426 TGAATTTACTGTTAAAGATGGTGATGC 58.757 33.333 0.00 0.00 30.58 3.91
3457 3980 7.944729 ATTTACTGTTAAAGATGGTGATGCT 57.055 32.000 0.00 0.00 30.58 3.79
3458 3981 6.985188 TTACTGTTAAAGATGGTGATGCTC 57.015 37.500 0.00 0.00 0.00 4.26
3459 3982 5.171339 ACTGTTAAAGATGGTGATGCTCT 57.829 39.130 0.00 0.00 0.00 4.09
3460 3983 5.181748 ACTGTTAAAGATGGTGATGCTCTC 58.818 41.667 0.00 0.00 0.00 3.20
3461 3984 5.046014 ACTGTTAAAGATGGTGATGCTCTCT 60.046 40.000 0.00 0.00 0.00 3.10
3462 3985 5.423015 TGTTAAAGATGGTGATGCTCTCTC 58.577 41.667 0.00 0.00 0.00 3.20
3463 3986 5.188555 TGTTAAAGATGGTGATGCTCTCTCT 59.811 40.000 0.00 0.00 0.00 3.10
3464 3987 4.405116 AAAGATGGTGATGCTCTCTCTC 57.595 45.455 0.00 0.00 0.00 3.20
3465 3988 3.317455 AGATGGTGATGCTCTCTCTCT 57.683 47.619 0.00 0.00 0.00 3.10
3466 3989 3.225104 AGATGGTGATGCTCTCTCTCTC 58.775 50.000 0.00 0.00 0.00 3.20
3467 3990 2.824689 TGGTGATGCTCTCTCTCTCT 57.175 50.000 0.00 0.00 0.00 3.10
3468 3991 2.653726 TGGTGATGCTCTCTCTCTCTC 58.346 52.381 0.00 0.00 0.00 3.20
3469 3992 2.241941 TGGTGATGCTCTCTCTCTCTCT 59.758 50.000 0.00 0.00 0.00 3.10
3504 4027 2.447443 TCCGCTCTTCTCTACACATGT 58.553 47.619 0.00 0.00 0.00 3.21
3513 4036 1.466167 CTCTACACATGTGCAACCTGC 59.534 52.381 25.68 0.00 45.29 4.85
3526 4049 0.181114 AACCTGCTGAGAGTGTTGCA 59.819 50.000 0.00 0.00 0.00 4.08
3663 4186 4.697352 AGCCACAGTGTAAGCTTATTTGAG 59.303 41.667 9.88 7.24 29.27 3.02
3678 4201 3.876309 TTTGAGGCTACCTTCCTTTGT 57.124 42.857 0.00 0.00 31.76 2.83
3715 4238 2.200899 CGGGCAGGTTTTTGAACTTTG 58.799 47.619 0.00 0.00 0.00 2.77
3716 4239 1.939934 GGGCAGGTTTTTGAACTTTGC 59.060 47.619 9.29 9.29 34.72 3.68
3717 4240 2.626840 GGCAGGTTTTTGAACTTTGCA 58.373 42.857 15.49 0.00 36.05 4.08
3718 4241 3.205338 GGCAGGTTTTTGAACTTTGCAT 58.795 40.909 15.49 0.00 36.05 3.96
4336 4860 3.645434 TGGCTAATTGCTGATTTGGGAT 58.355 40.909 0.00 0.00 42.39 3.85
4377 4901 1.005097 TCATGAGAAGCTTGCATGGGT 59.995 47.619 26.38 2.72 39.76 4.51
4553 5728 7.685481 TGACCTGTTCTTTATCTACCAATGAA 58.315 34.615 0.00 0.00 0.00 2.57
4662 5842 3.056313 GAAGGGTTGCAGCCATCGC 62.056 63.158 22.07 6.62 38.48 4.58
4695 5875 2.908626 GCTGAAAATAAAACGCACGAGG 59.091 45.455 0.00 0.00 0.00 4.63
4718 5898 1.783284 CTAGTCTTCTGTGCGTTGCA 58.217 50.000 0.00 0.00 35.60 4.08
5092 6278 2.534298 TGTTTGTGCATGTTTTGGTCG 58.466 42.857 0.00 0.00 0.00 4.79
5122 6310 5.707298 AGTAATCCATTGAACTCCACTGTTG 59.293 40.000 0.00 0.00 0.00 3.33
5185 6373 1.757699 ACTCTATTTCCAGAGGCGGTC 59.242 52.381 5.22 0.00 45.36 4.79
5275 6463 4.823442 CCTGAATATGCTTATGGCTCAACA 59.177 41.667 0.00 0.00 42.39 3.33
5373 6561 5.127682 AGGTGTGCTTCTCTTTGAAATGTTT 59.872 36.000 0.00 0.00 33.79 2.83
5394 6582 5.874895 TTCTGTGCATTCTTCTGATTCAG 57.125 39.130 7.38 7.38 0.00 3.02
5582 6770 1.531578 GGTCTGACGTCTTCCTTTTGC 59.468 52.381 17.92 0.00 0.00 3.68
5595 6784 7.522374 GTCTTCCTTTTGCTTTACATCTGTAG 58.478 38.462 0.00 0.00 0.00 2.74
5600 6789 7.119699 TCCTTTTGCTTTACATCTGTAGACATG 59.880 37.037 0.00 0.00 0.00 3.21
5641 6835 1.227674 CGGCTTCTCTATGGTGCCC 60.228 63.158 0.00 0.00 40.40 5.36
5667 6861 7.012704 CGATTGACCATCTGAAATCCATTTACT 59.987 37.037 0.00 0.00 0.00 2.24
5840 7040 5.765182 CCAAGGTACATTTATCACTGATCCC 59.235 44.000 0.00 0.00 0.00 3.85
5883 7083 5.482686 TTCGTAACAAACCAAGGTAACAC 57.517 39.130 0.00 0.00 41.41 3.32
5884 7084 4.511527 TCGTAACAAACCAAGGTAACACA 58.488 39.130 0.00 0.00 41.41 3.72
5892 7092 2.271800 CCAAGGTAACACATCTCGCTC 58.728 52.381 0.00 0.00 41.41 5.03
5894 7094 3.589988 CAAGGTAACACATCTCGCTCTT 58.410 45.455 0.00 0.00 41.41 2.85
5991 7191 2.291411 TGACCTAGAGTTAGCGGAGGTT 60.291 50.000 0.00 0.00 40.65 3.50
6027 7227 6.069847 AGGCATTGGAAATTGATCCTGAAAAT 60.070 34.615 0.00 0.00 40.35 1.82
6039 7239 3.343617 TCCTGAAAATAGGCAAGTTCCG 58.656 45.455 0.00 0.00 37.76 4.30
6041 7241 1.466950 TGAAAATAGGCAAGTTCCGCG 59.533 47.619 0.00 0.00 0.00 6.46
6054 7254 0.906775 TTCCGCGGAAGGGTCTATTT 59.093 50.000 35.81 0.00 43.37 1.40
6061 7261 4.632688 CGCGGAAGGGTCTATTTTCTAAAA 59.367 41.667 0.00 0.00 39.50 1.52
6062 7262 5.220605 CGCGGAAGGGTCTATTTTCTAAAAG 60.221 44.000 0.00 0.00 39.50 2.27
6063 7263 5.448768 GCGGAAGGGTCTATTTTCTAAAAGC 60.449 44.000 0.00 0.00 0.00 3.51
6064 7264 5.880887 CGGAAGGGTCTATTTTCTAAAAGCT 59.119 40.000 0.00 0.00 0.00 3.74
6104 7329 6.481954 AGGTTACACTGTCGATTTGATTTC 57.518 37.500 0.00 0.00 0.00 2.17
6391 7616 2.959484 CGCTCAAGGAAGGGCCAGA 61.959 63.158 6.18 0.00 40.02 3.86
6395 7620 0.323725 TCAAGGAAGGGCCAGATTGC 60.324 55.000 6.18 0.93 40.02 3.56
6563 7789 2.771688 TCCGGGAAATAGATGGTCCTT 58.228 47.619 0.00 0.00 0.00 3.36
6568 7794 4.720046 GGGAAATAGATGGTCCTTCCTTC 58.280 47.826 1.13 3.15 39.71 3.46
6579 7805 3.261897 GGTCCTTCCTTCAGAATCTGTGA 59.738 47.826 10.36 3.29 32.82 3.58
6590 7816 4.453478 TCAGAATCTGTGATGTGTGCTTTC 59.547 41.667 10.36 0.00 32.61 2.62
6594 7820 4.350368 TCTGTGATGTGTGCTTTCCTAA 57.650 40.909 0.00 0.00 0.00 2.69
6595 7821 4.065088 TCTGTGATGTGTGCTTTCCTAAC 58.935 43.478 0.00 0.00 0.00 2.34
6598 7824 1.804151 GATGTGTGCTTTCCTAACGCA 59.196 47.619 0.00 0.00 38.56 5.24
6602 7828 0.605589 GTGCTTTCCTAACGCACCCT 60.606 55.000 9.40 0.00 46.09 4.34
6619 7845 2.549633 CCTTATGCAAGGTTTCGCTG 57.450 50.000 0.00 0.00 45.59 5.18
6620 7846 1.468054 CCTTATGCAAGGTTTCGCTGC 60.468 52.381 0.00 0.00 45.59 5.25
6621 7847 1.470098 CTTATGCAAGGTTTCGCTGCT 59.530 47.619 0.00 0.00 37.00 4.24
6622 7848 1.533625 TATGCAAGGTTTCGCTGCTT 58.466 45.000 0.00 0.00 37.00 3.91
6631 7864 0.859232 TTTCGCTGCTTGAACGTCTC 59.141 50.000 0.00 0.00 0.00 3.36
6659 7892 4.810790 AGAGTTAATCTGAAGTGTGTCGG 58.189 43.478 0.00 0.00 36.69 4.79
6667 7900 3.865929 AAGTGTGTCGGCGCTCCTG 62.866 63.158 7.64 0.00 0.00 3.86
6673 7906 4.441695 TCGGCGCTCCTGCTGAAG 62.442 66.667 7.64 0.00 46.80 3.02
6686 7919 3.441244 CTGAAGGCAGCGTATGTGA 57.559 52.632 0.00 0.00 34.95 3.58
6687 7920 1.945387 CTGAAGGCAGCGTATGTGAT 58.055 50.000 0.00 0.00 34.95 3.06
6688 7921 1.596260 CTGAAGGCAGCGTATGTGATG 59.404 52.381 0.00 0.00 34.95 3.07
6689 7922 1.206849 TGAAGGCAGCGTATGTGATGA 59.793 47.619 0.00 0.00 0.00 2.92
6690 7923 2.158914 TGAAGGCAGCGTATGTGATGAT 60.159 45.455 0.00 0.00 0.00 2.45
6691 7924 3.069443 TGAAGGCAGCGTATGTGATGATA 59.931 43.478 0.00 0.00 0.00 2.15
6692 7925 3.309961 AGGCAGCGTATGTGATGATAG 57.690 47.619 0.00 0.00 0.00 2.08
6693 7926 1.728971 GGCAGCGTATGTGATGATAGC 59.271 52.381 0.00 0.00 0.00 2.97
6694 7927 1.728971 GCAGCGTATGTGATGATAGCC 59.271 52.381 0.00 0.00 0.00 3.93
6695 7928 2.341257 CAGCGTATGTGATGATAGCCC 58.659 52.381 0.00 0.00 0.00 5.19
6696 7929 1.276421 AGCGTATGTGATGATAGCCCC 59.724 52.381 0.00 0.00 0.00 5.80
6697 7930 1.276421 GCGTATGTGATGATAGCCCCT 59.724 52.381 0.00 0.00 0.00 4.79
6698 7931 2.496070 GCGTATGTGATGATAGCCCCTA 59.504 50.000 0.00 0.00 0.00 3.53
6699 7932 3.056107 GCGTATGTGATGATAGCCCCTAA 60.056 47.826 0.00 0.00 0.00 2.69
6700 7933 4.495422 CGTATGTGATGATAGCCCCTAAC 58.505 47.826 0.00 0.00 0.00 2.34
6701 7934 3.685139 ATGTGATGATAGCCCCTAACG 57.315 47.619 0.00 0.00 0.00 3.18
6702 7935 1.070134 TGTGATGATAGCCCCTAACGC 59.930 52.381 0.00 0.00 0.00 4.84
6703 7936 1.070134 GTGATGATAGCCCCTAACGCA 59.930 52.381 0.00 0.00 0.00 5.24
6704 7937 1.765904 TGATGATAGCCCCTAACGCAA 59.234 47.619 0.00 0.00 0.00 4.85
6705 7938 2.171659 TGATGATAGCCCCTAACGCAAA 59.828 45.455 0.00 0.00 0.00 3.68
6706 7939 2.325583 TGATAGCCCCTAACGCAAAG 57.674 50.000 0.00 0.00 0.00 2.77
6707 7940 1.557832 TGATAGCCCCTAACGCAAAGT 59.442 47.619 0.00 0.00 0.00 2.66
6708 7941 2.767394 TGATAGCCCCTAACGCAAAGTA 59.233 45.455 0.00 0.00 0.00 2.24
6897 8165 1.153329 TGGGTTGTCGTGCGTCTTT 60.153 52.632 0.00 0.00 0.00 2.52
6902 8170 2.511879 GTTGTCGTGCGTCTTTGTTTT 58.488 42.857 0.00 0.00 0.00 2.43
6947 8217 3.143728 TCGTTGGCCCTTTTTCTTCTAC 58.856 45.455 0.00 0.00 0.00 2.59
6951 8221 1.530323 GCCCTTTTTCTTCTACCGCA 58.470 50.000 0.00 0.00 0.00 5.69
7011 8281 1.070914 TGTAAGCCGGTGTTGTGATGA 59.929 47.619 1.90 0.00 0.00 2.92
7101 8375 7.147915 TGTCACTTTCACCTTTATGCTTTCTTT 60.148 33.333 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.225091 TGCCTTCAGTTTGGGTGATGAT 60.225 45.455 0.00 0.00 0.00 2.45
53 54 0.110056 GAGACATGCAGTTGTTGGCG 60.110 55.000 0.00 0.00 0.00 5.69
103 104 0.822164 ATCCAAATGCTTCAGCCTGC 59.178 50.000 0.00 0.00 41.18 4.85
136 137 4.035278 ACGAAGTACTTCAGCTAGCATC 57.965 45.455 29.95 5.27 41.94 3.91
150 151 7.496591 AGAAACATGGTTCTTGTAAACGAAGTA 59.503 33.333 20.53 0.00 34.80 2.24
156 157 6.849305 CGTGTAGAAACATGGTTCTTGTAAAC 59.151 38.462 30.00 21.10 38.71 2.01
171 172 4.352887 GACAGAGCTATCCGTGTAGAAAC 58.647 47.826 0.00 0.00 0.00 2.78
194 195 4.183686 CTTTGCCGCCGATGCCAG 62.184 66.667 0.00 0.00 0.00 4.85
239 240 1.144913 GGTGGGCCTAATGCTCCAATA 59.855 52.381 4.53 0.00 41.03 1.90
274 275 5.699143 CTGGAATGGAAAGTTAGGGATGAT 58.301 41.667 0.00 0.00 0.00 2.45
277 278 3.269381 TGCTGGAATGGAAAGTTAGGGAT 59.731 43.478 0.00 0.00 0.00 3.85
282 283 4.079253 GGTCTTGCTGGAATGGAAAGTTA 58.921 43.478 0.00 0.00 0.00 2.24
300 301 4.080695 AGTGCATACTGACATGATTGGTCT 60.081 41.667 0.00 0.00 35.34 3.85
315 316 7.042658 GGCGAGCCTTAATATTATAGTGCATAC 60.043 40.741 6.90 0.00 0.00 2.39
318 319 5.175859 GGCGAGCCTTAATATTATAGTGCA 58.824 41.667 6.90 0.00 0.00 4.57
339 340 1.063166 GCTAGCTTTGCGTGATGGC 59.937 57.895 7.70 0.00 0.00 4.40
346 347 3.754188 ATTTTGAGAGCTAGCTTTGCG 57.246 42.857 20.42 0.00 35.28 4.85
383 384 4.449405 GTCTGAAGAAAGACACCTAACAGC 59.551 45.833 0.00 0.00 44.98 4.40
417 418 3.889538 GGAAATAACATCCCTACCAAGGC 59.110 47.826 0.00 0.00 42.14 4.35
460 463 5.355350 GCAACATTTTACATAGAGGAGTGCT 59.645 40.000 0.00 0.00 0.00 4.40
461 464 5.355350 AGCAACATTTTACATAGAGGAGTGC 59.645 40.000 0.00 0.00 0.00 4.40
606 960 6.997655 AGGAAATTGAATTCAAAGGACCTTC 58.002 36.000 23.91 17.00 39.55 3.46
679 1033 0.458370 CAGGCCATGCGTTTAAAGCC 60.458 55.000 5.01 5.91 40.79 4.35
716 1070 5.351189 TGATCACGTGGTTACATTTCATCAG 59.649 40.000 17.00 0.00 0.00 2.90
895 1251 0.732571 AGCGAGAGAAAGAGAGAGCG 59.267 55.000 0.00 0.00 0.00 5.03
1206 1562 4.991153 TGAGAGGAATACTGTAGCAGTG 57.009 45.455 11.57 0.00 45.01 3.66
1218 1574 2.877168 GCATCTGCGATTTGAGAGGAAT 59.123 45.455 0.00 0.00 0.00 3.01
1247 1603 1.519455 GGACTGGATCGAACTGCGG 60.519 63.158 0.00 0.00 41.33 5.69
1266 1622 0.393808 TGAATCCTAAAGCGGGGCAC 60.394 55.000 0.00 0.00 0.00 5.01
1334 1690 4.863491 GACAAGGTGTCTACTCGTACAAA 58.137 43.478 1.09 0.00 43.73 2.83
1350 1706 1.066858 ACCATACAGCGTGAGACAAGG 60.067 52.381 0.00 0.00 0.00 3.61
1368 1724 4.382754 GCAACGATTCAAAATTGACAGACC 59.617 41.667 0.00 0.00 36.83 3.85
1386 1742 1.974249 ATCACAGCATCGCAGCAACG 61.974 55.000 0.00 0.00 36.85 4.10
1417 1773 2.690497 CTGATTCCAGAGGAGCGAACTA 59.310 50.000 0.00 0.00 43.02 2.24
1452 1808 0.907704 ACTAACTCCGCATCCCACCA 60.908 55.000 0.00 0.00 0.00 4.17
1493 1849 4.037923 TGACAGCATGCGAGAAGTCATATA 59.962 41.667 20.64 6.47 42.53 0.86
1506 1862 2.082231 ACTTCACAGATGACAGCATGC 58.918 47.619 10.51 10.51 42.53 4.06
1540 1896 6.219417 TCAAAACTTCACAAACCATGTCAT 57.781 33.333 0.00 0.00 41.46 3.06
1643 2013 5.852738 ACGATTCAAACTTCACAGATGAG 57.147 39.130 0.00 0.00 35.83 2.90
1718 2089 6.655003 TGAACACCTCAAGGATCAAACTAATC 59.345 38.462 2.30 0.00 38.94 1.75
1719 2090 6.542821 TGAACACCTCAAGGATCAAACTAAT 58.457 36.000 2.30 0.00 38.94 1.73
1720 2091 5.935945 TGAACACCTCAAGGATCAAACTAA 58.064 37.500 2.30 0.00 38.94 2.24
1721 2092 5.560722 TGAACACCTCAAGGATCAAACTA 57.439 39.130 2.30 0.00 38.94 2.24
1722 2093 4.437682 TGAACACCTCAAGGATCAAACT 57.562 40.909 2.30 0.00 38.94 2.66
1750 2121 3.056107 TGGTAGAGCTAGCAACAACGAAT 60.056 43.478 18.83 0.00 40.17 3.34
1864 2236 8.953368 AATTTCCCTAATGAGCAATTTCATTC 57.047 30.769 8.33 0.00 44.43 2.67
1885 2257 6.648725 ACAGCAACGGCAACAATAATAAATTT 59.351 30.769 0.00 0.00 44.61 1.82
1902 2274 3.878086 ATAAGTGACACAACAGCAACG 57.122 42.857 8.59 0.00 0.00 4.10
1952 2324 5.297776 CGAGTAATTTAGAACGGAGGGAGTA 59.702 44.000 0.00 0.00 0.00 2.59
1953 2325 4.097589 CGAGTAATTTAGAACGGAGGGAGT 59.902 45.833 0.00 0.00 0.00 3.85
1954 2326 4.097589 ACGAGTAATTTAGAACGGAGGGAG 59.902 45.833 0.00 0.00 0.00 4.30
1955 2327 4.019174 ACGAGTAATTTAGAACGGAGGGA 58.981 43.478 0.00 0.00 0.00 4.20
1956 2328 4.357996 GACGAGTAATTTAGAACGGAGGG 58.642 47.826 0.00 0.00 0.00 4.30
1957 2329 4.033684 CGACGAGTAATTTAGAACGGAGG 58.966 47.826 0.00 0.00 0.00 4.30
1958 2330 4.656041 ACGACGAGTAATTTAGAACGGAG 58.344 43.478 0.00 0.00 0.00 4.63
1959 2331 4.685169 ACGACGAGTAATTTAGAACGGA 57.315 40.909 0.00 0.00 0.00 4.69
1960 2332 5.799960 TCTACGACGAGTAATTTAGAACGG 58.200 41.667 0.00 0.00 34.45 4.44
1961 2333 7.710852 TTTCTACGACGAGTAATTTAGAACG 57.289 36.000 0.00 0.00 34.45 3.95
1962 2334 8.529911 CCATTTCTACGACGAGTAATTTAGAAC 58.470 37.037 0.00 0.00 34.45 3.01
1963 2335 8.461222 TCCATTTCTACGACGAGTAATTTAGAA 58.539 33.333 0.00 0.00 34.45 2.10
1964 2336 7.988737 TCCATTTCTACGACGAGTAATTTAGA 58.011 34.615 0.00 0.00 34.45 2.10
1965 2337 8.691727 CATCCATTTCTACGACGAGTAATTTAG 58.308 37.037 0.00 0.00 34.45 1.85
1966 2338 8.192774 ACATCCATTTCTACGACGAGTAATTTA 58.807 33.333 0.00 0.00 34.45 1.40
1967 2339 7.039882 ACATCCATTTCTACGACGAGTAATTT 58.960 34.615 0.00 0.00 34.45 1.82
1968 2340 6.570692 ACATCCATTTCTACGACGAGTAATT 58.429 36.000 0.00 0.00 34.45 1.40
1969 2341 6.145338 ACATCCATTTCTACGACGAGTAAT 57.855 37.500 0.00 0.00 34.45 1.89
1970 2342 5.571784 ACATCCATTTCTACGACGAGTAA 57.428 39.130 0.00 0.00 34.45 2.24
1971 2343 6.709397 AGATACATCCATTTCTACGACGAGTA 59.291 38.462 0.00 0.00 0.00 2.59
1972 2344 5.531659 AGATACATCCATTTCTACGACGAGT 59.468 40.000 0.00 0.00 0.00 4.18
1973 2345 6.003234 AGATACATCCATTTCTACGACGAG 57.997 41.667 0.00 0.00 0.00 4.18
1974 2346 6.932960 TCTAGATACATCCATTTCTACGACGA 59.067 38.462 0.00 0.00 0.00 4.20
1975 2347 7.130303 TCTAGATACATCCATTTCTACGACG 57.870 40.000 0.00 0.00 0.00 5.12
1976 2348 8.569641 AGTTCTAGATACATCCATTTCTACGAC 58.430 37.037 0.00 0.00 0.00 4.34
1977 2349 8.693120 AGTTCTAGATACATCCATTTCTACGA 57.307 34.615 0.00 0.00 0.00 3.43
2007 2379 9.734984 TCGTAGAAATGGATGTATCTAGATGTA 57.265 33.333 15.79 4.44 0.00 2.29
2008 2380 8.516234 GTCGTAGAAATGGATGTATCTAGATGT 58.484 37.037 15.79 1.25 39.69 3.06
2009 2381 7.694367 CGTCGTAGAAATGGATGTATCTAGATG 59.306 40.741 15.79 0.00 39.69 2.90
2010 2382 7.606839 TCGTCGTAGAAATGGATGTATCTAGAT 59.393 37.037 10.73 10.73 39.69 1.98
2011 2383 6.932960 TCGTCGTAGAAATGGATGTATCTAGA 59.067 38.462 0.00 0.00 39.69 2.43
2012 2384 7.095144 ACTCGTCGTAGAAATGGATGTATCTAG 60.095 40.741 0.00 0.00 39.69 2.43
2013 2385 6.709397 ACTCGTCGTAGAAATGGATGTATCTA 59.291 38.462 0.00 0.00 39.69 1.98
2014 2386 5.531659 ACTCGTCGTAGAAATGGATGTATCT 59.468 40.000 0.00 0.00 39.69 1.98
2015 2387 5.759963 ACTCGTCGTAGAAATGGATGTATC 58.240 41.667 0.00 0.00 39.69 2.24
2016 2388 5.769484 ACTCGTCGTAGAAATGGATGTAT 57.231 39.130 0.00 0.00 39.69 2.29
2017 2389 6.682423 TTACTCGTCGTAGAAATGGATGTA 57.318 37.500 0.00 0.00 39.69 2.29
2018 2390 5.571784 TTACTCGTCGTAGAAATGGATGT 57.428 39.130 0.00 0.00 39.69 3.06
2019 2391 7.337718 CAAATTACTCGTCGTAGAAATGGATG 58.662 38.462 0.00 0.00 39.69 3.51
2020 2392 6.479001 CCAAATTACTCGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
2021 2393 5.808540 CCAAATTACTCGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
2022 2394 5.808540 TCCAAATTACTCGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
2023 2395 6.880822 TCCAAATTACTCGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
2024 2396 6.034256 CGTTCCAAATTACTCGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
2025 2397 5.343058 CGTTCCAAATTACTCGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
2026 2398 4.853196 CGTTCCAAATTACTCGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
2027 2399 4.406069 CGTTCCAAATTACTCGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
2028 2400 3.545078 CCGTTCCAAATTACTCGTCGTAG 59.455 47.826 0.00 0.00 0.00 3.51
2029 2401 3.190327 TCCGTTCCAAATTACTCGTCGTA 59.810 43.478 0.00 0.00 0.00 3.43
2030 2402 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2031 2403 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2032 2404 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2033 2405 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2034 2406 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2035 2407 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2036 2408 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2037 2409 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2038 2410 3.118519 GCTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
2039 2411 2.355818 GCTACTCCCTCCGTTCCAAATT 60.356 50.000 0.00 0.00 0.00 1.82
2040 2412 1.209747 GCTACTCCCTCCGTTCCAAAT 59.790 52.381 0.00 0.00 0.00 2.32
2041 2413 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
2042 2414 0.543410 TGCTACTCCCTCCGTTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
2043 2415 0.543410 TTGCTACTCCCTCCGTTCCA 60.543 55.000 0.00 0.00 0.00 3.53
2044 2416 0.611714 TTTGCTACTCCCTCCGTTCC 59.388 55.000 0.00 0.00 0.00 3.62
2045 2417 2.678336 CAATTTGCTACTCCCTCCGTTC 59.322 50.000 0.00 0.00 0.00 3.95
2046 2418 2.711542 CAATTTGCTACTCCCTCCGTT 58.288 47.619 0.00 0.00 0.00 4.44
2047 2419 1.679032 GCAATTTGCTACTCCCTCCGT 60.679 52.381 14.11 0.00 40.96 4.69
2048 2420 1.017387 GCAATTTGCTACTCCCTCCG 58.983 55.000 14.11 0.00 40.96 4.63
2049 2421 1.340991 TGGCAATTTGCTACTCCCTCC 60.341 52.381 20.06 1.92 44.28 4.30
2050 2422 2.019984 CTGGCAATTTGCTACTCCCTC 58.980 52.381 20.06 2.60 44.28 4.30
2051 2423 1.355720 ACTGGCAATTTGCTACTCCCT 59.644 47.619 20.06 0.00 44.28 4.20
2052 2424 1.474077 CACTGGCAATTTGCTACTCCC 59.526 52.381 20.06 3.97 44.28 4.30
2053 2425 1.135286 GCACTGGCAATTTGCTACTCC 60.135 52.381 20.06 4.66 44.28 3.85
2054 2426 1.466360 CGCACTGGCAATTTGCTACTC 60.466 52.381 20.06 5.02 44.28 2.59
2055 2427 0.523072 CGCACTGGCAATTTGCTACT 59.477 50.000 20.06 1.41 44.28 2.57
2056 2428 0.521291 TCGCACTGGCAATTTGCTAC 59.479 50.000 20.06 6.06 44.28 3.58
2087 2499 7.650104 CGTCCAAAGAAGTAAGAGGAATAGATC 59.350 40.741 0.00 0.00 0.00 2.75
2153 2615 2.694628 TGCTCCACATTTGCAGAAAACT 59.305 40.909 0.00 0.00 32.55 2.66
2170 2632 1.831580 AAGAACCCTGCATTCTGCTC 58.168 50.000 1.89 0.00 45.31 4.26
2226 2689 1.737838 TTTGACCATCCGATCTGCAC 58.262 50.000 0.00 0.00 0.00 4.57
2275 2739 5.796350 ACACTCATATAAAACTCGGTTGC 57.204 39.130 0.00 0.00 0.00 4.17
2342 2806 0.106819 ATCCTCAGCCAACAGGATGC 60.107 55.000 0.00 0.00 46.16 3.91
2365 2829 9.030452 TGGTACATCAGCCAAAAATTACTTATT 57.970 29.630 0.00 0.00 0.00 1.40
2395 2859 5.179368 AGTGTAATGGACTGAAACATCAACG 59.821 40.000 0.00 0.00 0.00 4.10
2402 2866 3.058224 GTGCCAGTGTAATGGACTGAAAC 60.058 47.826 2.02 0.00 43.04 2.78
2473 2937 2.297701 TGTCCCAGCTTGAACTTGAAC 58.702 47.619 0.00 0.00 0.00 3.18
2532 2996 9.927081 AGACCTTATCCAAAAATGAGAATACAT 57.073 29.630 0.00 0.00 0.00 2.29
2533 2997 9.753674 AAGACCTTATCCAAAAATGAGAATACA 57.246 29.630 0.00 0.00 0.00 2.29
2535 2999 9.753674 ACAAGACCTTATCCAAAAATGAGAATA 57.246 29.630 0.00 0.00 0.00 1.75
2536 3000 8.655935 ACAAGACCTTATCCAAAAATGAGAAT 57.344 30.769 0.00 0.00 0.00 2.40
2537 3001 9.581289 TTACAAGACCTTATCCAAAAATGAGAA 57.419 29.630 0.00 0.00 0.00 2.87
2538 3002 9.581289 TTTACAAGACCTTATCCAAAAATGAGA 57.419 29.630 0.00 0.00 0.00 3.27
2539 3003 9.626045 GTTTACAAGACCTTATCCAAAAATGAG 57.374 33.333 0.00 0.00 0.00 2.90
2540 3004 8.293867 CGTTTACAAGACCTTATCCAAAAATGA 58.706 33.333 0.00 0.00 0.00 2.57
2541 3005 8.293867 TCGTTTACAAGACCTTATCCAAAAATG 58.706 33.333 0.00 0.00 0.00 2.32
2542 3006 8.398878 TCGTTTACAAGACCTTATCCAAAAAT 57.601 30.769 0.00 0.00 0.00 1.82
2543 3007 7.804843 TCGTTTACAAGACCTTATCCAAAAA 57.195 32.000 0.00 0.00 0.00 1.94
2544 3008 7.989416 ATCGTTTACAAGACCTTATCCAAAA 57.011 32.000 0.00 0.00 0.00 2.44
2545 3009 7.989416 AATCGTTTACAAGACCTTATCCAAA 57.011 32.000 0.00 0.00 0.00 3.28
2546 3010 7.662258 TCAAATCGTTTACAAGACCTTATCCAA 59.338 33.333 0.00 0.00 0.00 3.53
2547 3011 7.162761 TCAAATCGTTTACAAGACCTTATCCA 58.837 34.615 0.00 0.00 0.00 3.41
2548 3012 7.605410 TCAAATCGTTTACAAGACCTTATCC 57.395 36.000 0.00 0.00 0.00 2.59
2549 3013 9.490663 CAATCAAATCGTTTACAAGACCTTATC 57.509 33.333 0.00 0.00 0.00 1.75
2550 3014 9.010029 ACAATCAAATCGTTTACAAGACCTTAT 57.990 29.630 0.00 0.00 0.00 1.73
2551 3015 8.286800 CACAATCAAATCGTTTACAAGACCTTA 58.713 33.333 0.00 0.00 0.00 2.69
2552 3016 7.012894 TCACAATCAAATCGTTTACAAGACCTT 59.987 33.333 0.00 0.00 0.00 3.50
2553 3017 6.485313 TCACAATCAAATCGTTTACAAGACCT 59.515 34.615 0.00 0.00 0.00 3.85
2554 3018 6.664515 TCACAATCAAATCGTTTACAAGACC 58.335 36.000 0.00 0.00 0.00 3.85
2555 3019 6.303259 GCTCACAATCAAATCGTTTACAAGAC 59.697 38.462 0.00 0.00 0.00 3.01
2556 3020 6.017523 TGCTCACAATCAAATCGTTTACAAGA 60.018 34.615 0.00 0.00 0.00 3.02
2557 3021 6.142139 TGCTCACAATCAAATCGTTTACAAG 58.858 36.000 0.00 0.00 0.00 3.16
2558 3022 6.066054 TGCTCACAATCAAATCGTTTACAA 57.934 33.333 0.00 0.00 0.00 2.41
2559 3023 5.238432 ACTGCTCACAATCAAATCGTTTACA 59.762 36.000 0.00 0.00 0.00 2.41
2560 3024 5.565259 CACTGCTCACAATCAAATCGTTTAC 59.435 40.000 0.00 0.00 0.00 2.01
2561 3025 5.238432 ACACTGCTCACAATCAAATCGTTTA 59.762 36.000 0.00 0.00 0.00 2.01
2562 3026 4.036734 ACACTGCTCACAATCAAATCGTTT 59.963 37.500 0.00 0.00 0.00 3.60
2563 3027 3.565482 ACACTGCTCACAATCAAATCGTT 59.435 39.130 0.00 0.00 0.00 3.85
2564 3028 3.058708 CACACTGCTCACAATCAAATCGT 60.059 43.478 0.00 0.00 0.00 3.73
2565 3029 3.485633 CACACTGCTCACAATCAAATCG 58.514 45.455 0.00 0.00 0.00 3.34
2566 3030 3.240069 GCACACTGCTCACAATCAAATC 58.760 45.455 0.00 0.00 40.96 2.17
2567 3031 3.293311 GCACACTGCTCACAATCAAAT 57.707 42.857 0.00 0.00 40.96 2.32
2620 3122 8.387813 ACTACAAGAAACCCCATAATTCTGTTA 58.612 33.333 0.00 0.00 33.86 2.41
2621 3123 7.238710 ACTACAAGAAACCCCATAATTCTGTT 58.761 34.615 0.00 0.00 33.86 3.16
2622 3124 6.790319 ACTACAAGAAACCCCATAATTCTGT 58.210 36.000 0.00 0.00 33.86 3.41
2691 3193 2.159028 GCACAAGGCCCAAAACAAACTA 60.159 45.455 0.00 0.00 36.11 2.24
2733 3239 1.579964 CCAAAGCTCACATGCTCGCA 61.580 55.000 0.00 0.00 43.24 5.10
2742 3248 2.293122 TGTGCACATTACCAAAGCTCAC 59.707 45.455 17.42 0.00 0.00 3.51
2764 3270 4.933505 TTGTTCAAGAATGGTGATTGCA 57.066 36.364 0.00 0.00 0.00 4.08
2766 3272 7.543172 CCAGTATTTGTTCAAGAATGGTGATTG 59.457 37.037 7.41 0.00 37.12 2.67
2767 3273 7.451255 TCCAGTATTTGTTCAAGAATGGTGATT 59.549 33.333 12.29 0.00 41.65 2.57
2778 3285 6.017440 GCAACTACAGTCCAGTATTTGTTCAA 60.017 38.462 0.00 0.00 37.13 2.69
2810 3317 2.086054 AGTCGGTCATCAGCAACTTC 57.914 50.000 0.00 0.00 0.00 3.01
2838 3345 6.400568 CCATTGGTACAGAAATTTGCTGAAT 58.599 36.000 11.51 0.00 42.39 2.57
2852 3359 4.719773 AGATTGCTACTACCCATTGGTACA 59.280 41.667 1.20 0.00 45.45 2.90
2864 3371 9.998106 ACTAAAGAAAGAACAAGATTGCTACTA 57.002 29.630 0.00 0.00 0.00 1.82
2869 3376 9.952188 ACTAAACTAAAGAAAGAACAAGATTGC 57.048 29.630 0.00 0.00 0.00 3.56
2915 3422 9.856488 TTGCGGCAATTAACTTTGTTATAATAA 57.144 25.926 12.11 0.00 0.00 1.40
2916 3423 9.509855 CTTGCGGCAATTAACTTTGTTATAATA 57.490 29.630 16.80 0.00 0.00 0.98
2917 3424 8.032451 ACTTGCGGCAATTAACTTTGTTATAAT 58.968 29.630 16.80 0.00 0.00 1.28
2918 3425 7.371936 ACTTGCGGCAATTAACTTTGTTATAA 58.628 30.769 16.80 0.00 0.00 0.98
2919 3426 6.915349 ACTTGCGGCAATTAACTTTGTTATA 58.085 32.000 16.80 0.00 0.00 0.98
2920 3427 5.778862 ACTTGCGGCAATTAACTTTGTTAT 58.221 33.333 16.80 0.00 0.00 1.89
2921 3428 5.189659 ACTTGCGGCAATTAACTTTGTTA 57.810 34.783 16.80 0.00 0.00 2.41
2922 3429 4.053469 ACTTGCGGCAATTAACTTTGTT 57.947 36.364 16.80 0.00 0.00 2.83
2923 3430 3.726291 ACTTGCGGCAATTAACTTTGT 57.274 38.095 16.80 5.02 0.00 2.83
2924 3431 4.269844 ACAAACTTGCGGCAATTAACTTTG 59.730 37.500 16.80 17.82 0.00 2.77
2925 3432 4.438148 ACAAACTTGCGGCAATTAACTTT 58.562 34.783 16.80 6.31 0.00 2.66
2991 3506 7.254227 ACAAATTAGCAACTGAGTAACGAAA 57.746 32.000 0.00 0.00 0.00 3.46
3064 3579 5.592587 TTTCCCCTTTCTTCATGGTCTTA 57.407 39.130 0.00 0.00 0.00 2.10
3091 3606 4.453480 TTCAGGAGGAATGGTGAAAAGT 57.547 40.909 0.00 0.00 0.00 2.66
3139 3654 1.032014 CATTGGCCGGAATAGTTGGG 58.968 55.000 5.05 0.00 0.00 4.12
3340 3861 5.640357 AGAAATGTCGGTTACGCAAATAAGA 59.360 36.000 0.00 0.00 40.69 2.10
3341 3862 5.864986 AGAAATGTCGGTTACGCAAATAAG 58.135 37.500 0.00 0.00 40.69 1.73
3342 3863 5.866335 AGAAATGTCGGTTACGCAAATAA 57.134 34.783 0.00 0.00 40.69 1.40
3349 3870 4.208355 CAACACAAGAAATGTCGGTTACG 58.792 43.478 0.00 0.00 41.46 3.18
3355 3876 5.651172 TCACTACAACACAAGAAATGTCG 57.349 39.130 0.00 0.00 41.46 4.35
3407 3930 1.352352 CCCCTCAGACTTGGACACAAT 59.648 52.381 0.00 0.00 35.73 2.71
3456 3979 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3457 3980 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3458 3981 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3459 3982 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3460 3983 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3461 3984 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3462 3985 5.221422 GGAAGAGAGAGAGAGAGAGAGAGAG 60.221 52.000 0.00 0.00 0.00 3.20
3463 3986 4.651503 GGAAGAGAGAGAGAGAGAGAGAGA 59.348 50.000 0.00 0.00 0.00 3.10
3464 3987 4.500545 CGGAAGAGAGAGAGAGAGAGAGAG 60.501 54.167 0.00 0.00 0.00 3.20
3465 3988 3.384789 CGGAAGAGAGAGAGAGAGAGAGA 59.615 52.174 0.00 0.00 0.00 3.10
3466 3989 3.722147 CGGAAGAGAGAGAGAGAGAGAG 58.278 54.545 0.00 0.00 0.00 3.20
3467 3990 2.158957 GCGGAAGAGAGAGAGAGAGAGA 60.159 54.545 0.00 0.00 0.00 3.10
3468 3991 2.158900 AGCGGAAGAGAGAGAGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
3469 3992 1.837439 AGCGGAAGAGAGAGAGAGAGA 59.163 52.381 0.00 0.00 0.00 3.10
3553 4076 2.982488 AGGTGTCCTGAAACCAGATTCT 59.018 45.455 9.15 0.00 39.05 2.40
3715 4238 1.483415 ACCAAATCCATCTGCCAATGC 59.517 47.619 0.00 0.00 38.26 3.56
3716 4239 2.761767 TCACCAAATCCATCTGCCAATG 59.238 45.455 0.00 0.00 0.00 2.82
3717 4240 3.028850 CTCACCAAATCCATCTGCCAAT 58.971 45.455 0.00 0.00 0.00 3.16
3718 4241 2.041485 TCTCACCAAATCCATCTGCCAA 59.959 45.455 0.00 0.00 0.00 4.52
3793 4317 7.309990 CCATGAAACCAACTCAAGGTCAATAAT 60.310 37.037 0.00 0.00 38.76 1.28
3808 4332 3.882888 GTGACAGTCTTCCATGAAACCAA 59.117 43.478 1.31 0.00 0.00 3.67
4226 4750 7.731882 ATCTGCATGAATGAATACTCTTCTG 57.268 36.000 0.00 0.00 0.00 3.02
4336 4860 1.078823 TCTACCCTGCCTTCTTCCTGA 59.921 52.381 0.00 0.00 0.00 3.86
4377 4901 1.317613 GCAGGACATTGTCAACCACA 58.682 50.000 18.09 0.00 33.68 4.17
4417 4941 9.263538 CGTGCACCTTATATTTGTAACCTATAA 57.736 33.333 12.15 0.00 0.00 0.98
4418 4942 8.423349 ACGTGCACCTTATATTTGTAACCTATA 58.577 33.333 12.15 0.00 0.00 1.31
4553 5728 6.160684 GCGTACAAAAACCCCAAAGAAATAT 58.839 36.000 0.00 0.00 0.00 1.28
4604 5779 3.260475 TCTCTGACCTCTCTCTCTTCG 57.740 52.381 0.00 0.00 0.00 3.79
4611 5786 1.203075 ACCCGTTTCTCTGACCTCTCT 60.203 52.381 0.00 0.00 0.00 3.10
4662 5842 9.072294 CGTTTTATTTTCAGCCTTATAAACCAG 57.928 33.333 0.00 0.00 0.00 4.00
4670 5850 4.213694 TCGTGCGTTTTATTTTCAGCCTTA 59.786 37.500 0.00 0.00 0.00 2.69
4671 5851 3.003897 TCGTGCGTTTTATTTTCAGCCTT 59.996 39.130 0.00 0.00 0.00 4.35
4695 5875 0.038159 ACGCACAGAAGACTAGCACC 60.038 55.000 0.00 0.00 0.00 5.01
4718 5898 3.644966 TGCCTTCCGTTTCCAATAGAT 57.355 42.857 0.00 0.00 0.00 1.98
4948 6134 7.920151 CCAGTTATTTTGACTGTCAATGACAAA 59.080 33.333 22.60 14.18 42.26 2.83
5092 6278 7.067494 AGTGGAGTTCAATGGATTACTTAATGC 59.933 37.037 0.00 0.00 34.99 3.56
5185 6373 1.667724 GCACGATCAAGACCCTCAATG 59.332 52.381 0.00 0.00 0.00 2.82
5373 6561 3.688185 GCTGAATCAGAAGAATGCACAGA 59.312 43.478 15.38 0.00 32.44 3.41
5394 6582 3.641437 TTTTGGCTGTACACAGAATGC 57.359 42.857 13.50 0.00 46.59 3.56
5582 6770 7.978414 ACAGATGACATGTCTACAGATGTAAAG 59.022 37.037 25.55 1.91 32.85 1.85
5595 6784 4.917887 GTGAGAACACAGATGACATGTC 57.082 45.455 19.27 19.27 45.32 3.06
5641 6835 5.762825 AATGGATTTCAGATGGTCAATCG 57.237 39.130 0.00 0.00 40.54 3.34
5667 6861 0.106268 TGAACTTTGCAGCCTGGGAA 60.106 50.000 0.00 0.00 0.00 3.97
5883 7083 2.693069 ACCTGTCAAAAGAGCGAGATG 58.307 47.619 0.00 0.00 0.00 2.90
5884 7084 3.007398 AGAACCTGTCAAAAGAGCGAGAT 59.993 43.478 0.00 0.00 0.00 2.75
5892 7092 3.316308 CCAGTTCCAGAACCTGTCAAAAG 59.684 47.826 6.91 0.00 42.06 2.27
5894 7094 2.507886 TCCAGTTCCAGAACCTGTCAAA 59.492 45.455 6.91 0.00 42.06 2.69
5970 7170 1.284198 ACCTCCGCTAACTCTAGGTCA 59.716 52.381 0.00 0.00 35.67 4.02
5985 7185 3.686016 TGCCTTCTTAATGTCAACCTCC 58.314 45.455 0.00 0.00 0.00 4.30
5991 7191 6.855763 ATTTCCAATGCCTTCTTAATGTCA 57.144 33.333 0.00 0.00 0.00 3.58
6027 7227 1.079405 CTTCCGCGGAACTTGCCTA 60.079 57.895 35.81 14.27 0.00 3.93
6039 7239 5.448768 GCTTTTAGAAAATAGACCCTTCCGC 60.449 44.000 0.00 0.00 0.00 5.54
6041 7241 6.884836 TGAGCTTTTAGAAAATAGACCCTTCC 59.115 38.462 0.00 0.00 0.00 3.46
6054 7254 8.314021 TGTCAGTATCAGATTGAGCTTTTAGAA 58.686 33.333 0.00 0.00 0.00 2.10
6061 7261 4.469227 ACCTTGTCAGTATCAGATTGAGCT 59.531 41.667 0.00 0.00 0.00 4.09
6062 7262 4.764172 ACCTTGTCAGTATCAGATTGAGC 58.236 43.478 0.00 0.00 0.00 4.26
6063 7263 7.276658 GTGTAACCTTGTCAGTATCAGATTGAG 59.723 40.741 0.00 0.00 0.00 3.02
6064 7264 7.039011 AGTGTAACCTTGTCAGTATCAGATTGA 60.039 37.037 0.00 0.00 37.80 2.57
6104 7329 0.940126 ACAAGCAGCAACTTCGTCAG 59.060 50.000 0.00 0.00 0.00 3.51
6114 7339 0.607217 CATCCCTGTCACAAGCAGCA 60.607 55.000 0.00 0.00 32.93 4.41
6122 7347 2.808543 GTCAACTTCACATCCCTGTCAC 59.191 50.000 0.00 0.00 31.62 3.67
6391 7616 1.202782 CCATAGAGCTGAGCAGGCAAT 60.203 52.381 7.39 0.00 0.00 3.56
6395 7620 1.071128 GCCCATAGAGCTGAGCAGG 59.929 63.158 7.39 0.00 0.00 4.85
6563 7789 4.572909 CACACATCACAGATTCTGAAGGA 58.427 43.478 20.33 13.66 35.18 3.36
6568 7794 4.379186 GGAAAGCACACATCACAGATTCTG 60.379 45.833 12.17 12.17 37.52 3.02
6579 7805 1.890876 TGCGTTAGGAAAGCACACAT 58.109 45.000 0.00 0.00 35.81 3.21
6602 7828 1.533625 AGCAGCGAAACCTTGCATAA 58.466 45.000 0.00 0.00 40.22 1.90
6614 7840 0.038251 ATGAGACGTTCAAGCAGCGA 60.038 50.000 0.00 0.00 39.77 4.93
6615 7841 0.792640 AATGAGACGTTCAAGCAGCG 59.207 50.000 0.00 0.00 39.77 5.18
6616 7842 2.224079 TGAAATGAGACGTTCAAGCAGC 59.776 45.455 0.00 0.00 39.77 5.25
6617 7843 3.742882 TCTGAAATGAGACGTTCAAGCAG 59.257 43.478 0.00 5.72 39.77 4.24
6618 7844 3.727726 TCTGAAATGAGACGTTCAAGCA 58.272 40.909 0.00 0.00 39.77 3.91
6619 7845 3.743396 ACTCTGAAATGAGACGTTCAAGC 59.257 43.478 0.00 0.00 39.77 4.01
6620 7846 5.914085 AACTCTGAAATGAGACGTTCAAG 57.086 39.130 0.00 0.00 39.77 3.02
6621 7847 7.872993 AGATTAACTCTGAAATGAGACGTTCAA 59.127 33.333 0.00 0.00 34.09 2.69
6622 7848 7.378966 AGATTAACTCTGAAATGAGACGTTCA 58.621 34.615 0.00 0.00 37.50 3.18
6671 7904 2.627515 ATCATCACATACGCTGCCTT 57.372 45.000 0.00 0.00 0.00 4.35
6672 7905 2.611473 GCTATCATCACATACGCTGCCT 60.611 50.000 0.00 0.00 0.00 4.75
6673 7906 1.728971 GCTATCATCACATACGCTGCC 59.271 52.381 0.00 0.00 0.00 4.85
6674 7907 1.728971 GGCTATCATCACATACGCTGC 59.271 52.381 0.00 0.00 0.00 5.25
6675 7908 2.341257 GGGCTATCATCACATACGCTG 58.659 52.381 0.00 0.00 0.00 5.18
6676 7909 1.276421 GGGGCTATCATCACATACGCT 59.724 52.381 0.00 0.00 0.00 5.07
6677 7910 1.276421 AGGGGCTATCATCACATACGC 59.724 52.381 0.00 0.00 0.00 4.42
6678 7911 4.495422 GTTAGGGGCTATCATCACATACG 58.505 47.826 0.00 0.00 0.00 3.06
6679 7912 4.495422 CGTTAGGGGCTATCATCACATAC 58.505 47.826 0.00 0.00 0.00 2.39
6680 7913 3.056107 GCGTTAGGGGCTATCATCACATA 60.056 47.826 0.00 0.00 0.00 2.29
6681 7914 2.289694 GCGTTAGGGGCTATCATCACAT 60.290 50.000 0.00 0.00 0.00 3.21
6682 7915 1.070134 GCGTTAGGGGCTATCATCACA 59.930 52.381 0.00 0.00 0.00 3.58
6683 7916 1.070134 TGCGTTAGGGGCTATCATCAC 59.930 52.381 0.00 0.00 0.00 3.06
6684 7917 1.419381 TGCGTTAGGGGCTATCATCA 58.581 50.000 0.00 0.00 0.00 3.07
6685 7918 2.543777 TTGCGTTAGGGGCTATCATC 57.456 50.000 0.00 0.00 0.00 2.92
6686 7919 2.172717 ACTTTGCGTTAGGGGCTATCAT 59.827 45.455 0.00 0.00 0.00 2.45
6687 7920 1.557832 ACTTTGCGTTAGGGGCTATCA 59.442 47.619 0.00 0.00 0.00 2.15
6688 7921 2.327200 ACTTTGCGTTAGGGGCTATC 57.673 50.000 0.00 0.00 0.00 2.08
6689 7922 4.432980 AATACTTTGCGTTAGGGGCTAT 57.567 40.909 0.00 0.00 0.00 2.97
6690 7923 3.918294 AATACTTTGCGTTAGGGGCTA 57.082 42.857 0.00 0.00 0.00 3.93
6691 7924 2.801077 AATACTTTGCGTTAGGGGCT 57.199 45.000 0.00 0.00 0.00 5.19
6692 7925 2.876550 CCTAATACTTTGCGTTAGGGGC 59.123 50.000 0.00 0.00 40.37 5.80
6695 7928 4.809426 CAGACCCTAATACTTTGCGTTAGG 59.191 45.833 3.92 3.92 42.56 2.69
6696 7929 5.416947 ACAGACCCTAATACTTTGCGTTAG 58.583 41.667 0.00 0.00 0.00 2.34
6697 7930 5.186409 AGACAGACCCTAATACTTTGCGTTA 59.814 40.000 0.00 0.00 0.00 3.18
6698 7931 4.020485 AGACAGACCCTAATACTTTGCGTT 60.020 41.667 0.00 0.00 0.00 4.84
6699 7932 3.514309 AGACAGACCCTAATACTTTGCGT 59.486 43.478 0.00 0.00 0.00 5.24
6700 7933 4.124851 AGACAGACCCTAATACTTTGCG 57.875 45.455 0.00 0.00 0.00 4.85
6701 7934 6.583562 ACATAGACAGACCCTAATACTTTGC 58.416 40.000 0.00 0.00 0.00 3.68
6702 7935 7.011482 GCAACATAGACAGACCCTAATACTTTG 59.989 40.741 0.00 0.00 0.00 2.77
6703 7936 7.048512 GCAACATAGACAGACCCTAATACTTT 58.951 38.462 0.00 0.00 0.00 2.66
6704 7937 6.156256 TGCAACATAGACAGACCCTAATACTT 59.844 38.462 0.00 0.00 0.00 2.24
6705 7938 5.661312 TGCAACATAGACAGACCCTAATACT 59.339 40.000 0.00 0.00 0.00 2.12
6706 7939 5.914033 TGCAACATAGACAGACCCTAATAC 58.086 41.667 0.00 0.00 0.00 1.89
6707 7940 6.554982 AGATGCAACATAGACAGACCCTAATA 59.445 38.462 0.00 0.00 0.00 0.98
6708 7941 5.367937 AGATGCAACATAGACAGACCCTAAT 59.632 40.000 0.00 0.00 0.00 1.73
6883 8151 2.904011 AAAACAAAGACGCACGACAA 57.096 40.000 0.00 0.00 0.00 3.18
6919 8189 4.699522 AGGGCCAACGAAGACGCC 62.700 66.667 6.18 0.00 43.96 5.68
6947 8217 2.330286 TCTTTACACACGTACATGCGG 58.670 47.619 0.00 0.00 35.98 5.69
6951 8221 6.145048 GTGCTAACTTCTTTACACACGTACAT 59.855 38.462 0.00 0.00 0.00 2.29
7011 8281 4.530710 TTCTACGTAATGTGACAGGCTT 57.469 40.909 0.00 0.00 0.00 4.35
7230 8508 8.779303 TCGTCATGTGTTTGTAAGATGTTTAAT 58.221 29.630 0.00 0.00 0.00 1.40
7233 8511 6.481976 TCTCGTCATGTGTTTGTAAGATGTTT 59.518 34.615 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.