Multiple sequence alignment - TraesCS7A01G256800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G256800 chr7A 100.000 6045 0 0 1 6045 245930808 245936852 0.000000e+00 11164.0
1 TraesCS7A01G256800 chr7A 93.570 1042 62 5 3810 4847 663599040 663598000 0.000000e+00 1548.0
2 TraesCS7A01G256800 chr7A 98.214 112 2 0 5507 5618 245936208 245936319 4.780000e-46 196.0
3 TraesCS7A01G256800 chr7A 98.214 112 2 0 5401 5512 245936314 245936425 4.780000e-46 196.0
4 TraesCS7A01G256800 chr7A 83.529 85 12 2 5283 5366 262470617 262470534 1.810000e-10 78.7
5 TraesCS7A01G256800 chr7D 96.325 1823 52 10 815 2628 233018676 233016860 0.000000e+00 2981.0
6 TraesCS7A01G256800 chr7D 92.359 1047 67 12 3807 4846 177122746 177121706 0.000000e+00 1478.0
7 TraesCS7A01G256800 chr7D 92.976 783 36 10 1 769 264322817 264323594 0.000000e+00 1123.0
8 TraesCS7A01G256800 chr7D 92.830 781 37 10 1 766 192143440 192144216 0.000000e+00 1114.0
9 TraesCS7A01G256800 chr7D 92.531 482 18 7 3334 3803 233016851 233016376 0.000000e+00 675.0
10 TraesCS7A01G256800 chr7D 87.282 401 27 9 4932 5310 233015846 233015448 2.590000e-118 436.0
11 TraesCS7A01G256800 chr7D 93.846 65 4 0 5584 5648 233015298 233015234 1.390000e-16 99.0
12 TraesCS7A01G256800 chr7D 82.353 85 10 4 5283 5365 521891451 521891370 1.090000e-07 69.4
13 TraesCS7A01G256800 chr7B 95.122 1804 72 9 815 2613 204062196 204060404 0.000000e+00 2830.0
14 TraesCS7A01G256800 chr7B 93.870 783 30 9 1 770 155898432 155899209 0.000000e+00 1164.0
15 TraesCS7A01G256800 chr7B 84.945 631 49 21 4879 5477 204059813 204059197 1.120000e-166 597.0
16 TraesCS7A01G256800 chr7B 86.053 380 15 18 3334 3703 204060395 204060044 2.060000e-99 374.0
17 TraesCS7A01G256800 chr6D 95.192 1040 44 4 3810 4847 379093452 379092417 0.000000e+00 1639.0
18 TraesCS7A01G256800 chr6D 91.736 242 17 3 5647 5886 447386128 447386368 3.490000e-87 333.0
19 TraesCS7A01G256800 chr6D 91.322 242 18 3 5647 5886 89874724 89874484 1.620000e-85 327.0
20 TraesCS7A01G256800 chr2D 94.665 1031 52 3 3818 4847 505640922 505639894 0.000000e+00 1596.0
21 TraesCS7A01G256800 chr2D 92.621 786 38 14 1 772 587276498 587277277 0.000000e+00 1112.0
22 TraesCS7A01G256800 chr2D 91.393 244 18 3 5647 5888 498759871 498760113 1.260000e-86 331.0
23 TraesCS7A01G256800 chr2D 85.556 90 11 2 5283 5371 36406030 36405942 6.450000e-15 93.5
24 TraesCS7A01G256800 chr3D 94.056 1043 58 4 3810 4848 31866837 31867879 0.000000e+00 1580.0
25 TraesCS7A01G256800 chr3D 91.483 1045 82 6 3807 4848 115036745 115035705 0.000000e+00 1430.0
26 TraesCS7A01G256800 chr6B 93.225 1048 64 7 3807 4848 63260564 63261610 0.000000e+00 1535.0
27 TraesCS7A01G256800 chr6B 96.285 646 24 0 2634 3279 21064050 21063405 0.000000e+00 1061.0
28 TraesCS7A01G256800 chr6B 88.636 88 6 4 5283 5368 125727029 125726944 2.980000e-18 104.0
29 TraesCS7A01G256800 chr1D 93.295 1044 63 7 3810 4847 469381886 469382928 0.000000e+00 1533.0
30 TraesCS7A01G256800 chr1D 91.322 242 18 3 5647 5886 13626864 13627104 1.620000e-85 327.0
31 TraesCS7A01G256800 chr5A 92.375 1036 73 5 3811 4845 439180734 439181764 0.000000e+00 1471.0
32 TraesCS7A01G256800 chr5A 93.367 784 31 10 1 769 201396476 201395699 0.000000e+00 1140.0
33 TraesCS7A01G256800 chr5A 95.000 40 2 0 5283 5322 560718694 560718655 5.060000e-06 63.9
34 TraesCS7A01G256800 chr5B 94.730 778 26 11 1 766 693022132 693021358 0.000000e+00 1195.0
35 TraesCS7A01G256800 chr3A 94.344 778 30 8 1 766 663364124 663363349 0.000000e+00 1181.0
36 TraesCS7A01G256800 chr3A 91.498 247 17 4 5643 5887 80219527 80219283 2.700000e-88 337.0
37 TraesCS7A01G256800 chr6A 97.466 671 14 2 2633 3300 4098370 4099040 0.000000e+00 1142.0
38 TraesCS7A01G256800 chr4A 92.766 788 37 11 1 772 604597041 604596258 0.000000e+00 1122.0
39 TraesCS7A01G256800 chr4A 95.969 645 25 1 2633 3277 21229764 21229121 0.000000e+00 1046.0
40 TraesCS7A01G256800 chr1A 92.683 779 37 12 1 765 566579534 566578762 0.000000e+00 1105.0
41 TraesCS7A01G256800 chr1A 96.273 644 24 0 2634 3277 40891086 40891729 0.000000e+00 1057.0
42 TraesCS7A01G256800 chr1A 91.322 242 18 3 5647 5886 325414320 325414560 1.620000e-85 327.0
43 TraesCS7A01G256800 chr4B 96.875 640 20 0 2640 3279 59189780 59190419 0.000000e+00 1072.0
44 TraesCS7A01G256800 chr1B 96.296 648 23 1 2633 3279 269218256 269218903 0.000000e+00 1062.0
45 TraesCS7A01G256800 chr1B 95.833 648 26 1 2632 3279 25227106 25227752 0.000000e+00 1046.0
46 TraesCS7A01G256800 chr2B 95.969 645 26 0 2633 3277 225398335 225398979 0.000000e+00 1048.0
47 TraesCS7A01G256800 chr3B 95.545 651 25 3 2632 3281 26835783 26835136 0.000000e+00 1038.0
48 TraesCS7A01G256800 chr3B 97.297 37 1 0 5283 5319 47462554 47462518 5.060000e-06 63.9
49 TraesCS7A01G256800 chrUn 84.945 631 49 21 4879 5477 217710170 217710786 1.120000e-166 597.0
50 TraesCS7A01G256800 chrUn 90.698 387 23 8 815 1196 217708160 217708538 2.510000e-138 503.0
51 TraesCS7A01G256800 chrUn 90.698 387 23 9 815 1196 391403254 391402876 2.510000e-138 503.0
52 TraesCS7A01G256800 chrUn 90.698 387 23 9 815 1196 391493092 391492714 2.510000e-138 503.0
53 TraesCS7A01G256800 chrUn 95.000 40 2 0 5283 5322 84293678 84293639 5.060000e-06 63.9
54 TraesCS7A01G256800 chrUn 95.000 40 2 0 5283 5322 226947003 226946964 5.060000e-06 63.9
55 TraesCS7A01G256800 chr5D 91.322 242 18 3 5647 5886 423894395 423894635 1.620000e-85 327.0
56 TraesCS7A01G256800 chr5D 85.882 85 10 2 5283 5366 547799095 547799012 8.350000e-14 89.8
57 TraesCS7A01G256800 chr4D 91.322 242 18 3 5647 5886 45807605 45807845 1.620000e-85 327.0
58 TraesCS7A01G256800 chr4D 91.322 242 18 3 5647 5886 208004710 208004470 1.620000e-85 327.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G256800 chr7A 245930808 245936852 6044 False 3852.00 11164 98.809333 1 6045 3 chr7A.!!$F1 6044
1 TraesCS7A01G256800 chr7A 663598000 663599040 1040 True 1548.00 1548 93.570000 3810 4847 1 chr7A.!!$R2 1037
2 TraesCS7A01G256800 chr7D 177121706 177122746 1040 True 1478.00 1478 92.359000 3807 4846 1 chr7D.!!$R1 1039
3 TraesCS7A01G256800 chr7D 264322817 264323594 777 False 1123.00 1123 92.976000 1 769 1 chr7D.!!$F2 768
4 TraesCS7A01G256800 chr7D 192143440 192144216 776 False 1114.00 1114 92.830000 1 766 1 chr7D.!!$F1 765
5 TraesCS7A01G256800 chr7D 233015234 233018676 3442 True 1047.75 2981 92.496000 815 5648 4 chr7D.!!$R3 4833
6 TraesCS7A01G256800 chr7B 204059197 204062196 2999 True 1267.00 2830 88.706667 815 5477 3 chr7B.!!$R1 4662
7 TraesCS7A01G256800 chr7B 155898432 155899209 777 False 1164.00 1164 93.870000 1 770 1 chr7B.!!$F1 769
8 TraesCS7A01G256800 chr6D 379092417 379093452 1035 True 1639.00 1639 95.192000 3810 4847 1 chr6D.!!$R2 1037
9 TraesCS7A01G256800 chr2D 505639894 505640922 1028 True 1596.00 1596 94.665000 3818 4847 1 chr2D.!!$R2 1029
10 TraesCS7A01G256800 chr2D 587276498 587277277 779 False 1112.00 1112 92.621000 1 772 1 chr2D.!!$F2 771
11 TraesCS7A01G256800 chr3D 31866837 31867879 1042 False 1580.00 1580 94.056000 3810 4848 1 chr3D.!!$F1 1038
12 TraesCS7A01G256800 chr3D 115035705 115036745 1040 True 1430.00 1430 91.483000 3807 4848 1 chr3D.!!$R1 1041
13 TraesCS7A01G256800 chr6B 63260564 63261610 1046 False 1535.00 1535 93.225000 3807 4848 1 chr6B.!!$F1 1041
14 TraesCS7A01G256800 chr6B 21063405 21064050 645 True 1061.00 1061 96.285000 2634 3279 1 chr6B.!!$R1 645
15 TraesCS7A01G256800 chr1D 469381886 469382928 1042 False 1533.00 1533 93.295000 3810 4847 1 chr1D.!!$F2 1037
16 TraesCS7A01G256800 chr5A 439180734 439181764 1030 False 1471.00 1471 92.375000 3811 4845 1 chr5A.!!$F1 1034
17 TraesCS7A01G256800 chr5A 201395699 201396476 777 True 1140.00 1140 93.367000 1 769 1 chr5A.!!$R1 768
18 TraesCS7A01G256800 chr5B 693021358 693022132 774 True 1195.00 1195 94.730000 1 766 1 chr5B.!!$R1 765
19 TraesCS7A01G256800 chr3A 663363349 663364124 775 True 1181.00 1181 94.344000 1 766 1 chr3A.!!$R2 765
20 TraesCS7A01G256800 chr6A 4098370 4099040 670 False 1142.00 1142 97.466000 2633 3300 1 chr6A.!!$F1 667
21 TraesCS7A01G256800 chr4A 604596258 604597041 783 True 1122.00 1122 92.766000 1 772 1 chr4A.!!$R2 771
22 TraesCS7A01G256800 chr4A 21229121 21229764 643 True 1046.00 1046 95.969000 2633 3277 1 chr4A.!!$R1 644
23 TraesCS7A01G256800 chr1A 566578762 566579534 772 True 1105.00 1105 92.683000 1 765 1 chr1A.!!$R1 764
24 TraesCS7A01G256800 chr1A 40891086 40891729 643 False 1057.00 1057 96.273000 2634 3277 1 chr1A.!!$F1 643
25 TraesCS7A01G256800 chr4B 59189780 59190419 639 False 1072.00 1072 96.875000 2640 3279 1 chr4B.!!$F1 639
26 TraesCS7A01G256800 chr1B 269218256 269218903 647 False 1062.00 1062 96.296000 2633 3279 1 chr1B.!!$F2 646
27 TraesCS7A01G256800 chr1B 25227106 25227752 646 False 1046.00 1046 95.833000 2632 3279 1 chr1B.!!$F1 647
28 TraesCS7A01G256800 chr2B 225398335 225398979 644 False 1048.00 1048 95.969000 2633 3277 1 chr2B.!!$F1 644
29 TraesCS7A01G256800 chr3B 26835136 26835783 647 True 1038.00 1038 95.545000 2632 3281 1 chr3B.!!$R1 649
30 TraesCS7A01G256800 chrUn 217708160 217710786 2626 False 550.00 597 87.821500 815 5477 2 chrUn.!!$F1 4662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 820 0.110486 AAACGGGCTCACAAGGACAT 59.890 50.000 0.00 0.0 0.00 3.06 F
797 821 0.321653 AACGGGCTCACAAGGACATC 60.322 55.000 0.00 0.0 0.00 3.06 F
799 823 0.824109 CGGGCTCACAAGGACATCTA 59.176 55.000 0.00 0.0 0.00 1.98 F
2082 2115 1.003718 GCTCTACAACCGCCACCTT 60.004 57.895 0.00 0.0 0.00 3.50 F
3305 3340 1.337703 TGGCAGTGCTGTTCAATCAAC 59.662 47.619 16.11 0.0 35.28 3.18 F
4024 4077 0.036164 TTAGCAGTTCGCCCACACAT 59.964 50.000 0.00 0.0 44.04 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2733 2766 0.038892 TTCGGTGCTTGTAGTCGTCC 60.039 55.0 0.00 0.0 0.00 4.79 R
2933 2966 5.333875 CGGATCTCGTCGTTGTTCATCTATA 60.334 44.0 0.00 0.0 0.00 1.31 R
2939 2972 0.876399 TCGGATCTCGTCGTTGTTCA 59.124 50.0 0.00 0.0 40.32 3.18 R
3803 3856 0.095762 GGCGTTAACATTTCCGTCCG 59.904 55.0 6.39 0.0 0.00 4.79 R
4108 4163 0.249405 CAAAACGCATGGCAACTGGT 60.249 50.0 0.00 0.0 37.61 4.00 R
5925 6486 0.096281 GAACGGATCATTTTCGCGCA 59.904 50.0 8.75 0.0 0.00 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
351 364 9.950680 AAATTCGCCAATTAATTACTACTGATG 57.049 29.630 0.00 0.00 31.51 3.07
699 723 1.134729 GCCGACGGGGTGATACTTTTA 60.135 52.381 17.22 0.00 38.44 1.52
787 811 8.570068 AAAAATCTAAGTAATAAACGGGCTCA 57.430 30.769 0.00 0.00 0.00 4.26
788 812 7.549615 AAATCTAAGTAATAAACGGGCTCAC 57.450 36.000 0.00 0.00 0.00 3.51
789 813 5.664294 TCTAAGTAATAAACGGGCTCACA 57.336 39.130 0.00 0.00 0.00 3.58
790 814 6.040209 TCTAAGTAATAAACGGGCTCACAA 57.960 37.500 0.00 0.00 0.00 3.33
791 815 6.103997 TCTAAGTAATAAACGGGCTCACAAG 58.896 40.000 0.00 0.00 0.00 3.16
792 816 3.606687 AGTAATAAACGGGCTCACAAGG 58.393 45.455 0.00 0.00 0.00 3.61
793 817 2.871096 AATAAACGGGCTCACAAGGA 57.129 45.000 0.00 0.00 0.00 3.36
794 818 2.109425 ATAAACGGGCTCACAAGGAC 57.891 50.000 0.00 0.00 0.00 3.85
795 819 0.759959 TAAACGGGCTCACAAGGACA 59.240 50.000 0.00 0.00 0.00 4.02
796 820 0.110486 AAACGGGCTCACAAGGACAT 59.890 50.000 0.00 0.00 0.00 3.06
797 821 0.321653 AACGGGCTCACAAGGACATC 60.322 55.000 0.00 0.00 0.00 3.06
798 822 1.194781 ACGGGCTCACAAGGACATCT 61.195 55.000 0.00 0.00 0.00 2.90
799 823 0.824109 CGGGCTCACAAGGACATCTA 59.176 55.000 0.00 0.00 0.00 1.98
800 824 1.414181 CGGGCTCACAAGGACATCTAT 59.586 52.381 0.00 0.00 0.00 1.98
801 825 2.804572 CGGGCTCACAAGGACATCTATG 60.805 54.545 0.00 0.00 0.00 2.23
802 826 2.171448 GGGCTCACAAGGACATCTATGT 59.829 50.000 0.00 0.00 45.16 2.29
803 827 3.201290 GGCTCACAAGGACATCTATGTG 58.799 50.000 0.00 9.77 41.95 3.21
804 828 3.201290 GCTCACAAGGACATCTATGTGG 58.799 50.000 0.00 8.48 42.56 4.17
805 829 3.118629 GCTCACAAGGACATCTATGTGGA 60.119 47.826 0.00 4.81 42.56 4.02
806 830 4.623886 GCTCACAAGGACATCTATGTGGAA 60.624 45.833 0.00 1.08 42.56 3.53
807 831 5.089970 TCACAAGGACATCTATGTGGAAG 57.910 43.478 0.00 0.00 42.56 3.46
808 832 4.080919 TCACAAGGACATCTATGTGGAAGG 60.081 45.833 0.00 0.00 42.56 3.46
809 833 4.080919 CACAAGGACATCTATGTGGAAGGA 60.081 45.833 0.00 0.00 41.95 3.36
810 834 4.723789 ACAAGGACATCTATGTGGAAGGAT 59.276 41.667 0.00 0.00 41.95 3.24
811 835 5.905331 ACAAGGACATCTATGTGGAAGGATA 59.095 40.000 0.00 0.00 41.95 2.59
812 836 6.183361 ACAAGGACATCTATGTGGAAGGATAC 60.183 42.308 0.00 0.00 41.95 2.24
847 871 4.823442 CGTTTTAGGGTTTCCAGGTTACTT 59.177 41.667 0.00 0.00 34.83 2.24
860 884 1.583054 GTTACTTCCCATAGCGGCAG 58.417 55.000 1.45 0.00 0.00 4.85
937 961 6.322491 CGCTATTTTCCTTCCCTGTTTTAAG 58.678 40.000 0.00 0.00 0.00 1.85
940 964 8.242053 GCTATTTTCCTTCCCTGTTTTAAGTAC 58.758 37.037 0.00 0.00 0.00 2.73
948 972 5.613329 TCCCTGTTTTAAGTACATTCGTGT 58.387 37.500 0.00 0.00 0.00 4.49
982 1006 1.952621 TCTAACCCAACCTCTCCCTG 58.047 55.000 0.00 0.00 0.00 4.45
1042 1066 7.783119 TCCATTCCATCTCAGATCAAAATCAAT 59.217 33.333 0.00 0.00 34.07 2.57
1164 1194 3.358076 CTCACGTTCCCCTCTCCGC 62.358 68.421 0.00 0.00 0.00 5.54
1181 1211 1.132262 CCGCGCACCAATCTAATGTTT 59.868 47.619 8.75 0.00 0.00 2.83
1782 1815 1.341531 CTCGACTTCCTCAACCACACT 59.658 52.381 0.00 0.00 0.00 3.55
1833 1866 3.963124 CTTCCCTTGGGCGGCCAAT 62.963 63.158 39.62 0.00 0.00 3.16
1845 1878 1.475034 GCGGCCAATCAGAAGGACATA 60.475 52.381 2.24 0.00 29.93 2.29
2082 2115 1.003718 GCTCTACAACCGCCACCTT 60.004 57.895 0.00 0.00 0.00 3.50
2142 2175 2.679996 AGGTCCAAAATGCCGGCC 60.680 61.111 26.77 6.44 0.00 6.13
2385 2418 1.887707 CCTCGCCCTGAATTACGCC 60.888 63.158 0.00 0.00 0.00 5.68
2452 2485 2.813908 GCTACGAGCCCAACACCG 60.814 66.667 0.00 0.00 34.48 4.94
2505 2538 2.598394 TGGCAGCAGTTCAAGGCC 60.598 61.111 0.00 0.00 44.82 5.19
2613 2646 5.982516 TGCTCGCAAATCTTTACAAATTTGT 59.017 32.000 25.99 25.99 42.29 2.83
2615 2648 7.003648 GCTCGCAAATCTTTACAAATTTGTTC 58.996 34.615 27.66 6.64 42.29 3.18
2616 2649 7.088097 TCGCAAATCTTTACAAATTTGTTCG 57.912 32.000 27.66 16.12 42.29 3.95
2617 2650 5.778345 CGCAAATCTTTACAAATTTGTTCGC 59.222 36.000 27.66 16.38 42.29 4.70
2618 2651 6.345723 CGCAAATCTTTACAAATTTGTTCGCT 60.346 34.615 27.66 6.32 42.29 4.93
2619 2652 7.149047 CGCAAATCTTTACAAATTTGTTCGCTA 60.149 33.333 27.66 7.86 42.29 4.26
2620 2653 8.484008 GCAAATCTTTACAAATTTGTTCGCTAA 58.516 29.630 27.66 13.46 42.29 3.09
2623 2656 7.561237 TCTTTACAAATTTGTTCGCTAATGC 57.439 32.000 27.66 0.00 42.35 3.56
2624 2657 7.367285 TCTTTACAAATTTGTTCGCTAATGCT 58.633 30.769 27.66 2.17 42.35 3.79
2625 2658 8.508062 TCTTTACAAATTTGTTCGCTAATGCTA 58.492 29.630 27.66 3.63 42.35 3.49
2626 2659 8.667987 TTTACAAATTTGTTCGCTAATGCTAG 57.332 30.769 27.66 0.00 42.35 3.42
2627 2660 5.095490 ACAAATTTGTTCGCTAATGCTAGC 58.905 37.500 18.13 8.10 41.96 3.42
2628 2661 5.335583 ACAAATTTGTTCGCTAATGCTAGCA 60.336 36.000 21.85 21.85 43.91 3.49
2629 2662 6.789822 ACAAATTTGTTCGCTAATGCTAGCAA 60.790 34.615 23.54 5.03 43.91 3.91
2630 2663 8.517576 ACAAATTTGTTCGCTAATGCTAGCAAG 61.518 37.037 23.54 16.71 43.91 4.01
2733 2766 2.623889 CCAGAATCGTAGACCACCTAGG 59.376 54.545 7.41 7.41 42.51 3.02
2869 2902 1.694169 ATAGGACCAGCACCCCAGG 60.694 63.158 0.00 0.00 0.00 4.45
2939 2972 3.914312 CCGAAGGCACACGAATATAGAT 58.086 45.455 0.00 0.00 46.14 1.98
3263 3298 6.457799 GCACGAACCTTAACTTTCTTTCTTGA 60.458 38.462 0.00 0.00 0.00 3.02
3300 3335 2.031245 CGTAATTGGCAGTGCTGTTCAA 60.031 45.455 16.11 10.92 33.33 2.69
3301 3336 3.366273 CGTAATTGGCAGTGCTGTTCAAT 60.366 43.478 16.11 12.77 37.79 2.57
3302 3337 3.308438 AATTGGCAGTGCTGTTCAATC 57.692 42.857 16.11 0.00 36.43 2.67
3303 3338 1.689984 TTGGCAGTGCTGTTCAATCA 58.310 45.000 16.11 0.00 0.00 2.57
3304 3339 1.689984 TGGCAGTGCTGTTCAATCAA 58.310 45.000 16.11 0.00 0.00 2.57
3305 3340 1.337703 TGGCAGTGCTGTTCAATCAAC 59.662 47.619 16.11 0.00 35.28 3.18
3306 3341 1.610522 GGCAGTGCTGTTCAATCAACT 59.389 47.619 16.11 0.00 35.79 3.16
3307 3342 2.606308 GGCAGTGCTGTTCAATCAACTG 60.606 50.000 16.11 0.00 35.79 3.16
3308 3343 2.291465 GCAGTGCTGTTCAATCAACTGA 59.709 45.455 8.18 0.00 36.30 3.41
3309 3344 3.608707 GCAGTGCTGTTCAATCAACTGAG 60.609 47.826 8.18 0.00 36.30 3.35
3310 3345 3.562973 CAGTGCTGTTCAATCAACTGAGT 59.437 43.478 0.00 0.00 36.30 3.41
3311 3346 4.751600 CAGTGCTGTTCAATCAACTGAGTA 59.248 41.667 0.00 0.00 36.30 2.59
3312 3347 5.237127 CAGTGCTGTTCAATCAACTGAGTAA 59.763 40.000 0.00 0.00 36.30 2.24
3313 3348 5.237344 AGTGCTGTTCAATCAACTGAGTAAC 59.763 40.000 0.00 0.00 36.30 2.50
3314 3349 4.515191 TGCTGTTCAATCAACTGAGTAACC 59.485 41.667 0.00 0.00 36.30 2.85
3315 3350 4.377431 GCTGTTCAATCAACTGAGTAACCG 60.377 45.833 0.00 0.00 36.30 4.44
3316 3351 4.951254 TGTTCAATCAACTGAGTAACCGA 58.049 39.130 0.00 0.00 35.79 4.69
3317 3352 5.547465 TGTTCAATCAACTGAGTAACCGAT 58.453 37.500 0.00 0.00 35.79 4.18
3318 3353 5.995282 TGTTCAATCAACTGAGTAACCGATT 59.005 36.000 0.00 0.00 35.79 3.34
3319 3354 6.073276 TGTTCAATCAACTGAGTAACCGATTG 60.073 38.462 15.22 15.22 40.53 2.67
3320 3355 5.547465 TCAATCAACTGAGTAACCGATTGT 58.453 37.500 18.25 0.00 40.23 2.71
3321 3356 5.995282 TCAATCAACTGAGTAACCGATTGTT 59.005 36.000 18.25 0.00 40.23 2.83
3322 3357 7.156000 TCAATCAACTGAGTAACCGATTGTTA 58.844 34.615 18.25 5.96 40.23 2.41
3323 3358 7.822334 TCAATCAACTGAGTAACCGATTGTTAT 59.178 33.333 18.25 0.00 41.33 1.89
3324 3359 6.961359 TCAACTGAGTAACCGATTGTTATG 57.039 37.500 0.00 0.00 41.33 1.90
3325 3360 5.872617 TCAACTGAGTAACCGATTGTTATGG 59.127 40.000 0.00 0.00 41.33 2.74
3326 3361 5.416271 ACTGAGTAACCGATTGTTATGGT 57.584 39.130 0.00 0.00 41.33 3.55
3328 3363 6.938507 ACTGAGTAACCGATTGTTATGGTTA 58.061 36.000 0.00 0.00 43.91 2.85
3329 3364 7.039882 ACTGAGTAACCGATTGTTATGGTTAG 58.960 38.462 3.46 0.00 45.99 2.34
3331 3366 7.388437 TGAGTAACCGATTGTTATGGTTAGTT 58.612 34.615 10.97 1.02 46.65 2.24
3332 3367 7.546667 TGAGTAACCGATTGTTATGGTTAGTTC 59.453 37.037 10.97 8.99 46.65 3.01
3400 3435 9.363401 TGTGGTGATAATTAGCAGTAGTAGTAT 57.637 33.333 3.09 0.00 0.00 2.12
3678 3730 5.633117 TCATGCCTATCATTTTCTATGCCA 58.367 37.500 0.00 0.00 31.79 4.92
3892 3945 4.997395 TCCAGTAACTTCTGCACAAATCTC 59.003 41.667 0.00 0.00 34.47 2.75
3949 4002 1.299544 CTCGCGTGTGTGGTGTGTA 60.300 57.895 5.77 0.00 0.00 2.90
3990 4043 0.397564 GTTTTACCACACGGAGGGGA 59.602 55.000 5.34 0.00 35.59 4.81
4024 4077 0.036164 TTAGCAGTTCGCCCACACAT 59.964 50.000 0.00 0.00 44.04 3.21
4082 4136 4.760047 GCCATCTCGCCCACACGT 62.760 66.667 0.00 0.00 0.00 4.49
4108 4163 0.909610 CCTCTCCCACACCCAAGCTA 60.910 60.000 0.00 0.00 0.00 3.32
4211 4269 5.364446 ACCCGAACATGTCAGTTACCATATA 59.636 40.000 0.00 0.00 0.00 0.86
4221 4279 8.744568 TGTCAGTTACCATATATTTTGCATGA 57.255 30.769 0.00 0.00 0.00 3.07
4328 4387 6.471146 AGCACATGTCAACTCTCTCTTTTAT 58.529 36.000 0.00 0.00 0.00 1.40
4571 4635 4.788201 GCAACTGCACTTAAACGAACATGA 60.788 41.667 0.00 0.00 41.59 3.07
4619 4686 1.635663 GGCGCGCAGTAAAGTGTCAT 61.636 55.000 34.42 0.00 0.00 3.06
4660 4727 4.720127 TACGAGGCCTGACGTACA 57.280 55.556 19.65 4.26 42.61 2.90
4779 4852 3.168528 ACGTGTGGGCTGGTCCTT 61.169 61.111 0.00 0.00 34.39 3.36
4783 4856 1.244816 GTGTGGGCTGGTCCTTTTAC 58.755 55.000 0.00 0.00 34.39 2.01
4784 4857 0.847373 TGTGGGCTGGTCCTTTTACA 59.153 50.000 0.00 0.00 34.39 2.41
4848 4921 0.892755 TGACAGTTATCGGCGTCCTT 59.107 50.000 6.85 0.00 0.00 3.36
4849 4922 1.274167 TGACAGTTATCGGCGTCCTTT 59.726 47.619 6.85 0.00 0.00 3.11
4850 4923 2.289195 TGACAGTTATCGGCGTCCTTTT 60.289 45.455 6.85 0.00 0.00 2.27
4851 4924 2.344025 ACAGTTATCGGCGTCCTTTTC 58.656 47.619 6.85 0.00 0.00 2.29
4852 4925 1.323534 CAGTTATCGGCGTCCTTTTCG 59.676 52.381 6.85 0.00 0.00 3.46
4858 4931 0.739813 CGGCGTCCTTTTCGGAATCT 60.740 55.000 0.00 0.00 45.32 2.40
4875 4948 5.586243 CGGAATCTATTTGGACTTGATGTGT 59.414 40.000 0.00 0.00 0.00 3.72
4876 4949 6.457392 CGGAATCTATTTGGACTTGATGTGTG 60.457 42.308 0.00 0.00 0.00 3.82
4877 4950 5.824904 ATCTATTTGGACTTGATGTGTGC 57.175 39.130 0.00 0.00 0.00 4.57
4920 5208 4.932200 ACTACTTGATGTCTGCTTAACAGC 59.068 41.667 0.00 0.00 46.76 4.40
5067 5589 4.808414 ACTGGTCGAAGAATGAGATGAA 57.192 40.909 0.00 0.00 39.69 2.57
5076 5598 5.919707 CGAAGAATGAGATGAATGTCGATCT 59.080 40.000 0.00 0.00 0.00 2.75
5082 5604 3.894920 AGATGAATGTCGATCTACGCTG 58.105 45.455 0.00 0.00 42.26 5.18
5141 5663 4.262894 CCCTTTTAGTCTGTAGGCAGTCAA 60.263 45.833 0.00 0.00 43.05 3.18
5142 5664 4.932200 CCTTTTAGTCTGTAGGCAGTCAAG 59.068 45.833 0.00 0.00 43.05 3.02
5143 5665 3.594603 TTAGTCTGTAGGCAGTCAAGC 57.405 47.619 0.00 0.00 43.05 4.01
5144 5666 1.342074 AGTCTGTAGGCAGTCAAGCA 58.658 50.000 0.00 0.00 43.05 3.91
5145 5667 1.001406 AGTCTGTAGGCAGTCAAGCAC 59.999 52.381 0.00 0.00 43.05 4.40
5146 5668 1.001406 GTCTGTAGGCAGTCAAGCACT 59.999 52.381 0.00 0.00 43.05 4.40
5147 5669 1.694150 TCTGTAGGCAGTCAAGCACTT 59.306 47.619 0.00 0.00 43.05 3.16
5148 5670 2.897326 TCTGTAGGCAGTCAAGCACTTA 59.103 45.455 0.00 0.00 43.05 2.24
5181 5726 8.401709 CCCAGCTTCATTTAGTTCTAAAGAATC 58.598 37.037 10.16 9.15 36.33 2.52
5281 5826 6.308282 CACTTCTGTAAGTTGGTTACTCGATC 59.692 42.308 0.00 0.00 43.60 3.69
5291 5836 2.359531 GGTTACTCGATCACTCCCTCTG 59.640 54.545 0.00 0.00 0.00 3.35
5387 5941 9.638239 GAGTACAAAATTGCATTGAAGGATTTA 57.362 29.630 5.55 0.00 0.00 1.40
5402 5963 6.543831 TGAAGGATTTATTAGCTTTCTGCCTC 59.456 38.462 0.00 0.00 44.23 4.70
5421 5982 4.574013 GCCTCTGGACATTGAGATTGTTAG 59.426 45.833 0.00 0.00 32.44 2.34
5432 5993 5.392767 TGAGATTGTTAGGAGTGTGAGAC 57.607 43.478 0.00 0.00 0.00 3.36
5433 5994 5.080337 TGAGATTGTTAGGAGTGTGAGACT 58.920 41.667 0.00 0.00 37.76 3.24
5441 6002 2.362169 GAGTGTGAGACTCTCTTGCC 57.638 55.000 2.06 0.00 46.85 4.52
5457 6018 1.674322 GCCGTGCACTGTGGGTATT 60.674 57.895 16.19 0.00 0.00 1.89
5458 6019 1.241315 GCCGTGCACTGTGGGTATTT 61.241 55.000 16.19 0.00 0.00 1.40
5478 6039 4.083862 GGGAGACACGGGGACTGC 62.084 72.222 0.00 0.00 39.14 4.40
5479 6040 3.311110 GGAGACACGGGGACTGCA 61.311 66.667 0.00 0.00 39.14 4.41
5483 6044 3.883744 GACACGGGGACTGCAGGTG 62.884 68.421 19.93 17.48 39.14 4.00
5490 6051 2.113986 GACTGCAGGTGCCCTTGT 59.886 61.111 19.93 0.00 41.18 3.16
5491 6052 1.374947 GACTGCAGGTGCCCTTGTA 59.625 57.895 19.93 0.00 41.18 2.41
5494 6055 2.034066 GCAGGTGCCCTTGTAGCA 59.966 61.111 0.00 0.00 38.08 3.49
5495 6056 1.379044 GCAGGTGCCCTTGTAGCAT 60.379 57.895 0.00 0.00 43.29 3.79
5496 6057 0.967380 GCAGGTGCCCTTGTAGCATT 60.967 55.000 0.00 0.00 43.29 3.56
5497 6058 1.098050 CAGGTGCCCTTGTAGCATTC 58.902 55.000 0.00 0.00 43.29 2.67
5499 6060 1.285962 AGGTGCCCTTGTAGCATTCAT 59.714 47.619 0.00 0.00 43.29 2.57
5500 6061 2.509548 AGGTGCCCTTGTAGCATTCATA 59.490 45.455 0.00 0.00 43.29 2.15
5501 6062 2.618709 GGTGCCCTTGTAGCATTCATAC 59.381 50.000 0.00 0.00 43.29 2.39
5502 6063 3.545703 GTGCCCTTGTAGCATTCATACT 58.454 45.455 0.00 0.00 43.29 2.12
5503 6064 3.947834 GTGCCCTTGTAGCATTCATACTT 59.052 43.478 0.00 0.00 43.29 2.24
5505 6066 4.199310 GCCCTTGTAGCATTCATACTTCA 58.801 43.478 0.00 0.00 0.00 3.02
5507 6068 5.431765 CCCTTGTAGCATTCATACTTCACT 58.568 41.667 0.00 0.00 0.00 3.41
5508 6069 5.882557 CCCTTGTAGCATTCATACTTCACTT 59.117 40.000 0.00 0.00 0.00 3.16
5509 6070 6.375455 CCCTTGTAGCATTCATACTTCACTTT 59.625 38.462 0.00 0.00 0.00 2.66
5510 6071 7.246311 CCTTGTAGCATTCATACTTCACTTTG 58.754 38.462 0.00 0.00 0.00 2.77
5511 6072 6.741992 TGTAGCATTCATACTTCACTTTGG 57.258 37.500 0.00 0.00 0.00 3.28
5512 6073 6.472016 TGTAGCATTCATACTTCACTTTGGA 58.528 36.000 0.00 0.00 0.00 3.53
5514 6075 4.393062 AGCATTCATACTTCACTTTGGACG 59.607 41.667 0.00 0.00 0.00 4.79
5515 6076 4.154195 GCATTCATACTTCACTTTGGACGT 59.846 41.667 0.00 0.00 0.00 4.34
5516 6077 5.334879 GCATTCATACTTCACTTTGGACGTT 60.335 40.000 0.00 0.00 0.00 3.99
5517 6078 5.666969 TTCATACTTCACTTTGGACGTTG 57.333 39.130 0.00 0.00 0.00 4.10
5518 6079 4.951254 TCATACTTCACTTTGGACGTTGA 58.049 39.130 0.00 0.00 0.00 3.18
5519 6080 4.988540 TCATACTTCACTTTGGACGTTGAG 59.011 41.667 0.00 0.00 0.00 3.02
5520 6081 3.536956 ACTTCACTTTGGACGTTGAGA 57.463 42.857 0.00 0.00 0.00 3.27
5521 6082 4.073293 ACTTCACTTTGGACGTTGAGAT 57.927 40.909 0.00 0.00 0.00 2.75
5522 6083 4.451900 ACTTCACTTTGGACGTTGAGATT 58.548 39.130 0.00 0.00 0.00 2.40
5523 6084 4.273480 ACTTCACTTTGGACGTTGAGATTG 59.727 41.667 0.00 0.00 0.00 2.67
5524 6085 3.804036 TCACTTTGGACGTTGAGATTGT 58.196 40.909 0.00 0.00 0.00 2.71
5525 6086 4.196193 TCACTTTGGACGTTGAGATTGTT 58.804 39.130 0.00 0.00 0.00 2.83
5526 6087 5.361427 TCACTTTGGACGTTGAGATTGTTA 58.639 37.500 0.00 0.00 0.00 2.41
5527 6088 5.465390 TCACTTTGGACGTTGAGATTGTTAG 59.535 40.000 0.00 0.00 0.00 2.34
5528 6089 4.755123 ACTTTGGACGTTGAGATTGTTAGG 59.245 41.667 0.00 0.00 0.00 2.69
5529 6090 4.610605 TTGGACGTTGAGATTGTTAGGA 57.389 40.909 0.00 0.00 0.00 2.94
5530 6091 4.188247 TGGACGTTGAGATTGTTAGGAG 57.812 45.455 0.00 0.00 0.00 3.69
5531 6092 3.576982 TGGACGTTGAGATTGTTAGGAGT 59.423 43.478 0.00 0.00 0.00 3.85
5532 6093 3.927142 GGACGTTGAGATTGTTAGGAGTG 59.073 47.826 0.00 0.00 0.00 3.51
5533 6094 4.557205 GACGTTGAGATTGTTAGGAGTGT 58.443 43.478 0.00 0.00 0.00 3.55
5534 6095 4.307432 ACGTTGAGATTGTTAGGAGTGTG 58.693 43.478 0.00 0.00 0.00 3.82
5535 6096 4.038763 ACGTTGAGATTGTTAGGAGTGTGA 59.961 41.667 0.00 0.00 0.00 3.58
5536 6097 4.623167 CGTTGAGATTGTTAGGAGTGTGAG 59.377 45.833 0.00 0.00 0.00 3.51
5537 6098 5.564848 CGTTGAGATTGTTAGGAGTGTGAGA 60.565 44.000 0.00 0.00 0.00 3.27
5538 6099 5.392767 TGAGATTGTTAGGAGTGTGAGAC 57.607 43.478 0.00 0.00 0.00 3.36
5539 6100 5.080337 TGAGATTGTTAGGAGTGTGAGACT 58.920 41.667 0.00 0.00 37.76 3.24
5547 6108 2.362169 GAGTGTGAGACTCTCTTGCC 57.638 55.000 2.06 0.00 46.85 4.52
5548 6109 0.600557 AGTGTGAGACTCTCTTGCCG 59.399 55.000 7.58 0.00 0.00 5.69
5549 6110 0.315568 GTGTGAGACTCTCTTGCCGT 59.684 55.000 7.58 0.00 0.00 5.68
5550 6111 0.315251 TGTGAGACTCTCTTGCCGTG 59.685 55.000 7.58 0.00 0.00 4.94
5551 6112 1.011451 GTGAGACTCTCTTGCCGTGC 61.011 60.000 7.58 0.00 0.00 5.34
5552 6113 1.290324 GAGACTCTCTTGCCGTGCA 59.710 57.895 0.00 0.00 36.47 4.57
5553 6114 1.005630 AGACTCTCTTGCCGTGCAC 60.006 57.895 6.82 6.82 38.71 4.57
5554 6115 1.005630 GACTCTCTTGCCGTGCACT 60.006 57.895 16.19 0.00 38.71 4.40
5555 6116 1.287730 GACTCTCTTGCCGTGCACTG 61.288 60.000 16.19 9.93 38.71 3.66
5556 6117 1.301244 CTCTCTTGCCGTGCACTGT 60.301 57.895 16.19 0.00 38.71 3.55
5557 6118 1.563435 CTCTCTTGCCGTGCACTGTG 61.563 60.000 16.19 2.76 38.71 3.66
5558 6119 2.591429 TCTTGCCGTGCACTGTGG 60.591 61.111 16.19 10.15 38.71 4.17
5559 6120 3.663176 CTTGCCGTGCACTGTGGG 61.663 66.667 16.19 9.76 38.71 4.61
5560 6121 4.497984 TTGCCGTGCACTGTGGGT 62.498 61.111 16.19 0.00 38.71 4.51
5561 6122 3.108288 TTGCCGTGCACTGTGGGTA 62.108 57.895 16.19 5.17 38.71 3.69
5562 6123 2.046314 GCCGTGCACTGTGGGTAT 60.046 61.111 16.19 0.00 0.00 2.73
5563 6124 1.674322 GCCGTGCACTGTGGGTATT 60.674 57.895 16.19 0.00 0.00 1.89
5564 6125 1.241315 GCCGTGCACTGTGGGTATTT 61.241 55.000 16.19 0.00 0.00 1.40
5565 6126 0.521291 CCGTGCACTGTGGGTATTTG 59.479 55.000 16.19 0.00 0.00 2.32
5566 6127 1.518325 CGTGCACTGTGGGTATTTGA 58.482 50.000 16.19 0.00 0.00 2.69
5567 6128 1.464608 CGTGCACTGTGGGTATTTGAG 59.535 52.381 16.19 0.00 0.00 3.02
5568 6129 1.812571 GTGCACTGTGGGTATTTGAGG 59.187 52.381 10.32 0.00 0.00 3.86
5569 6130 1.271871 TGCACTGTGGGTATTTGAGGG 60.272 52.381 10.21 0.00 0.00 4.30
5570 6131 1.004277 GCACTGTGGGTATTTGAGGGA 59.996 52.381 10.21 0.00 0.00 4.20
5571 6132 2.941415 GCACTGTGGGTATTTGAGGGAG 60.941 54.545 10.21 0.00 0.00 4.30
5572 6133 2.571653 CACTGTGGGTATTTGAGGGAGA 59.428 50.000 0.00 0.00 0.00 3.71
5573 6134 2.572104 ACTGTGGGTATTTGAGGGAGAC 59.428 50.000 0.00 0.00 0.00 3.36
5574 6135 2.571653 CTGTGGGTATTTGAGGGAGACA 59.428 50.000 0.00 0.00 0.00 3.41
5575 6136 2.304761 TGTGGGTATTTGAGGGAGACAC 59.695 50.000 0.00 0.00 0.00 3.67
5576 6137 1.553248 TGGGTATTTGAGGGAGACACG 59.447 52.381 0.00 0.00 0.00 4.49
5577 6138 1.134491 GGGTATTTGAGGGAGACACGG 60.134 57.143 0.00 0.00 0.00 4.94
5578 6139 1.134491 GGTATTTGAGGGAGACACGGG 60.134 57.143 0.00 0.00 0.00 5.28
5579 6140 1.134491 GTATTTGAGGGAGACACGGGG 60.134 57.143 0.00 0.00 0.00 5.73
5580 6141 0.546747 ATTTGAGGGAGACACGGGGA 60.547 55.000 0.00 0.00 0.00 4.81
5581 6142 1.477685 TTTGAGGGAGACACGGGGAC 61.478 60.000 0.00 0.00 0.00 4.46
5582 6143 2.037527 GAGGGAGACACGGGGACT 59.962 66.667 0.00 0.00 0.00 3.85
5605 6166 1.285962 AGGTGCCCTTGTAGCATTCAT 59.714 47.619 0.00 0.00 43.29 2.57
5616 6177 7.246311 CCTTGTAGCATTCATACTTCACTTTG 58.754 38.462 0.00 0.00 0.00 2.77
5617 6178 6.741992 TGTAGCATTCATACTTCACTTTGG 57.258 37.500 0.00 0.00 0.00 3.28
5648 6209 3.200165 AGGGAGAGGGCAAAACAGTATAC 59.800 47.826 0.00 0.00 0.00 1.47
5649 6210 3.200165 GGGAGAGGGCAAAACAGTATACT 59.800 47.826 0.00 0.00 0.00 2.12
5650 6211 4.443621 GGAGAGGGCAAAACAGTATACTC 58.556 47.826 1.26 0.00 0.00 2.59
5651 6212 4.443621 GAGAGGGCAAAACAGTATACTCC 58.556 47.826 1.26 0.00 0.00 3.85
5652 6213 3.200165 AGAGGGCAAAACAGTATACTCCC 59.800 47.826 14.53 14.53 0.00 4.30
5653 6214 3.190439 AGGGCAAAACAGTATACTCCCT 58.810 45.455 17.86 17.86 37.99 4.20
5654 6215 3.200165 AGGGCAAAACAGTATACTCCCTC 59.800 47.826 17.86 1.28 38.39 4.30
5655 6216 3.542648 GGCAAAACAGTATACTCCCTCC 58.457 50.000 1.26 0.00 0.00 4.30
5656 6217 3.200165 GGCAAAACAGTATACTCCCTCCT 59.800 47.826 1.26 0.00 0.00 3.69
5657 6218 4.324331 GGCAAAACAGTATACTCCCTCCTT 60.324 45.833 1.26 0.00 0.00 3.36
5658 6219 5.254115 GCAAAACAGTATACTCCCTCCTTT 58.746 41.667 1.26 0.00 0.00 3.11
5659 6220 5.354513 GCAAAACAGTATACTCCCTCCTTTC 59.645 44.000 1.26 0.00 0.00 2.62
5660 6221 6.472887 CAAAACAGTATACTCCCTCCTTTCA 58.527 40.000 1.26 0.00 0.00 2.69
5661 6222 6.893020 AAACAGTATACTCCCTCCTTTCAT 57.107 37.500 1.26 0.00 0.00 2.57
5662 6223 6.487299 AACAGTATACTCCCTCCTTTCATC 57.513 41.667 1.26 0.00 0.00 2.92
5663 6224 5.782925 ACAGTATACTCCCTCCTTTCATCT 58.217 41.667 1.26 0.00 0.00 2.90
5664 6225 6.923670 ACAGTATACTCCCTCCTTTCATCTA 58.076 40.000 1.26 0.00 0.00 1.98
5665 6226 7.540183 ACAGTATACTCCCTCCTTTCATCTAT 58.460 38.462 1.26 0.00 0.00 1.98
5666 6227 8.679725 ACAGTATACTCCCTCCTTTCATCTATA 58.320 37.037 1.26 0.00 0.00 1.31
5667 6228 9.707957 CAGTATACTCCCTCCTTTCATCTATAT 57.292 37.037 1.26 0.00 0.00 0.86
5672 6233 6.895204 ACTCCCTCCTTTCATCTATATAGAGC 59.105 42.308 17.22 0.00 35.50 4.09
5673 6234 7.050493 TCCCTCCTTTCATCTATATAGAGCT 57.950 40.000 17.22 0.00 35.50 4.09
5674 6235 8.176216 TCCCTCCTTTCATCTATATAGAGCTA 57.824 38.462 17.22 3.47 35.50 3.32
5675 6236 8.624670 TCCCTCCTTTCATCTATATAGAGCTAA 58.375 37.037 17.22 8.80 35.50 3.09
5676 6237 9.432982 CCCTCCTTTCATCTATATAGAGCTAAT 57.567 37.037 17.22 0.00 35.50 1.73
5773 6334 8.610248 TTATTGAAAGTTCCTTTGTCATACGA 57.390 30.769 0.00 0.00 33.49 3.43
5774 6335 6.928979 TTGAAAGTTCCTTTGTCATACGAA 57.071 33.333 0.00 0.00 33.49 3.85
5775 6336 7.504924 TTGAAAGTTCCTTTGTCATACGAAT 57.495 32.000 0.00 0.00 33.49 3.34
5776 6337 7.504924 TGAAAGTTCCTTTGTCATACGAATT 57.495 32.000 0.00 0.00 33.49 2.17
5777 6338 7.936584 TGAAAGTTCCTTTGTCATACGAATTT 58.063 30.769 0.00 0.00 33.49 1.82
5778 6339 7.860373 TGAAAGTTCCTTTGTCATACGAATTTG 59.140 33.333 0.00 0.00 33.49 2.32
5779 6340 7.504924 AAGTTCCTTTGTCATACGAATTTGA 57.495 32.000 0.00 0.00 0.00 2.69
5780 6341 7.504924 AGTTCCTTTGTCATACGAATTTGAA 57.495 32.000 0.00 0.00 0.00 2.69
5781 6342 7.584987 AGTTCCTTTGTCATACGAATTTGAAG 58.415 34.615 0.00 0.00 0.00 3.02
5782 6343 6.494893 TCCTTTGTCATACGAATTTGAAGG 57.505 37.500 0.00 0.49 0.00 3.46
5783 6344 6.001460 TCCTTTGTCATACGAATTTGAAGGT 58.999 36.000 0.00 0.00 0.00 3.50
5784 6345 7.162761 TCCTTTGTCATACGAATTTGAAGGTA 58.837 34.615 0.00 0.00 0.00 3.08
5785 6346 7.827236 TCCTTTGTCATACGAATTTGAAGGTAT 59.173 33.333 0.00 0.00 0.00 2.73
5786 6347 7.910162 CCTTTGTCATACGAATTTGAAGGTATG 59.090 37.037 0.00 4.16 42.10 2.39
5787 6348 6.358118 TGTCATACGAATTTGAAGGTATGC 57.642 37.500 0.00 2.77 41.09 3.14
5788 6349 6.112734 TGTCATACGAATTTGAAGGTATGCT 58.887 36.000 0.00 0.00 41.09 3.79
5789 6350 6.597672 TGTCATACGAATTTGAAGGTATGCTT 59.402 34.615 0.00 0.00 41.09 3.91
5790 6351 7.126398 GTCATACGAATTTGAAGGTATGCTTC 58.874 38.462 0.00 0.00 41.09 3.86
5791 6352 4.600012 ACGAATTTGAAGGTATGCTTCG 57.400 40.909 0.00 0.00 39.71 3.79
5792 6353 4.000988 ACGAATTTGAAGGTATGCTTCGT 58.999 39.130 0.00 0.00 41.43 3.85
5793 6354 4.142902 ACGAATTTGAAGGTATGCTTCGTG 60.143 41.667 6.63 0.00 43.65 4.35
5794 6355 4.142902 CGAATTTGAAGGTATGCTTCGTGT 60.143 41.667 0.00 0.00 33.83 4.49
5795 6356 5.062934 CGAATTTGAAGGTATGCTTCGTGTA 59.937 40.000 0.00 0.00 33.83 2.90
5796 6357 6.401688 CGAATTTGAAGGTATGCTTCGTGTAA 60.402 38.462 0.00 0.00 33.83 2.41
5797 6358 5.856126 TTTGAAGGTATGCTTCGTGTAAG 57.144 39.130 0.00 0.00 38.32 2.34
5798 6359 4.530710 TGAAGGTATGCTTCGTGTAAGT 57.469 40.909 0.00 0.00 37.53 2.24
5799 6360 4.890088 TGAAGGTATGCTTCGTGTAAGTT 58.110 39.130 0.00 0.00 37.53 2.66
5800 6361 4.688879 TGAAGGTATGCTTCGTGTAAGTTG 59.311 41.667 0.00 0.00 37.53 3.16
5801 6362 3.000727 AGGTATGCTTCGTGTAAGTTGC 58.999 45.455 0.00 0.00 37.53 4.17
5802 6363 2.739913 GGTATGCTTCGTGTAAGTTGCA 59.260 45.455 0.00 0.00 37.53 4.08
5803 6364 3.374058 GGTATGCTTCGTGTAAGTTGCAT 59.626 43.478 0.00 0.00 42.64 3.96
5804 6365 2.967459 TGCTTCGTGTAAGTTGCATG 57.033 45.000 6.82 6.82 37.53 4.06
5805 6366 2.217750 TGCTTCGTGTAAGTTGCATGT 58.782 42.857 12.19 0.00 37.53 3.21
5806 6367 2.223144 TGCTTCGTGTAAGTTGCATGTC 59.777 45.455 12.19 4.99 37.53 3.06
5807 6368 2.223144 GCTTCGTGTAAGTTGCATGTCA 59.777 45.455 12.19 1.50 37.53 3.58
5808 6369 3.120199 GCTTCGTGTAAGTTGCATGTCAT 60.120 43.478 12.19 0.00 37.53 3.06
5809 6370 4.092821 GCTTCGTGTAAGTTGCATGTCATA 59.907 41.667 12.19 0.00 37.53 2.15
5810 6371 5.220662 GCTTCGTGTAAGTTGCATGTCATAT 60.221 40.000 12.19 0.00 37.53 1.78
5811 6372 6.019075 GCTTCGTGTAAGTTGCATGTCATATA 60.019 38.462 12.19 0.00 37.53 0.86
5812 6373 7.307396 GCTTCGTGTAAGTTGCATGTCATATAT 60.307 37.037 12.19 0.00 37.53 0.86
5813 6374 8.432110 TTCGTGTAAGTTGCATGTCATATATT 57.568 30.769 12.19 0.00 0.00 1.28
5814 6375 9.535878 TTCGTGTAAGTTGCATGTCATATATTA 57.464 29.630 12.19 0.00 0.00 0.98
5815 6376 9.705290 TCGTGTAAGTTGCATGTCATATATTAT 57.295 29.630 12.19 0.00 0.00 1.28
5837 6398 9.830975 ATTATTGCTTTAAAGTTTGGTCAAAGT 57.169 25.926 16.38 0.00 35.61 2.66
5838 6399 9.660180 TTATTGCTTTAAAGTTTGGTCAAAGTT 57.340 25.926 16.38 9.87 43.55 2.66
5840 6401 9.660180 ATTGCTTTAAAGTTTGGTCAAAGTTAA 57.340 25.926 16.38 10.67 41.57 2.01
5841 6402 8.468720 TGCTTTAAAGTTTGGTCAAAGTTAAC 57.531 30.769 16.38 0.00 41.57 2.01
5842 6403 8.088981 TGCTTTAAAGTTTGGTCAAAGTTAACA 58.911 29.630 16.38 7.92 41.57 2.41
5843 6404 9.093970 GCTTTAAAGTTTGGTCAAAGTTAACAT 57.906 29.630 16.38 0.00 41.57 2.71
5845 6406 8.844441 TTAAAGTTTGGTCAAAGTTAACATCG 57.156 30.769 14.53 0.00 41.57 3.84
5846 6407 6.687081 AAGTTTGGTCAAAGTTAACATCGA 57.313 33.333 13.06 0.00 40.88 3.59
5847 6408 6.687081 AGTTTGGTCAAAGTTAACATCGAA 57.313 33.333 8.61 0.00 30.25 3.71
5848 6409 7.090953 AGTTTGGTCAAAGTTAACATCGAAA 57.909 32.000 8.61 1.10 30.25 3.46
5849 6410 7.540299 AGTTTGGTCAAAGTTAACATCGAAAA 58.460 30.769 8.61 0.00 30.25 2.29
5850 6411 8.030106 AGTTTGGTCAAAGTTAACATCGAAAAA 58.970 29.630 8.61 3.17 30.25 1.94
5851 6412 7.743520 TTGGTCAAAGTTAACATCGAAAAAC 57.256 32.000 8.61 0.00 0.00 2.43
5852 6413 5.966503 TGGTCAAAGTTAACATCGAAAAACG 59.033 36.000 8.61 0.00 44.09 3.60
5853 6414 5.108518 GGTCAAAGTTAACATCGAAAAACGC 60.109 40.000 8.61 0.00 42.26 4.84
5854 6415 5.452944 GTCAAAGTTAACATCGAAAAACGCA 59.547 36.000 8.61 0.00 42.26 5.24
5855 6416 6.141685 GTCAAAGTTAACATCGAAAAACGCAT 59.858 34.615 8.61 0.00 42.26 4.73
5856 6417 6.693545 TCAAAGTTAACATCGAAAAACGCATT 59.306 30.769 8.61 0.00 42.26 3.56
5857 6418 7.856398 TCAAAGTTAACATCGAAAAACGCATTA 59.144 29.630 8.61 0.00 42.26 1.90
5858 6419 7.775729 AAGTTAACATCGAAAAACGCATTAG 57.224 32.000 8.61 0.00 42.26 1.73
5859 6420 7.124347 AGTTAACATCGAAAAACGCATTAGA 57.876 32.000 8.61 0.00 42.26 2.10
5860 6421 7.013529 AGTTAACATCGAAAAACGCATTAGAC 58.986 34.615 8.61 0.00 42.26 2.59
5861 6422 5.607119 AACATCGAAAAACGCATTAGACT 57.393 34.783 0.00 0.00 42.26 3.24
5862 6423 5.204673 ACATCGAAAAACGCATTAGACTC 57.795 39.130 0.00 0.00 42.26 3.36
5863 6424 4.929808 ACATCGAAAAACGCATTAGACTCT 59.070 37.500 0.00 0.00 42.26 3.24
5864 6425 6.097356 ACATCGAAAAACGCATTAGACTCTA 58.903 36.000 0.00 0.00 42.26 2.43
5865 6426 6.757010 ACATCGAAAAACGCATTAGACTCTAT 59.243 34.615 0.00 0.00 42.26 1.98
5866 6427 7.919091 ACATCGAAAAACGCATTAGACTCTATA 59.081 33.333 0.00 0.00 42.26 1.31
5867 6428 8.916654 CATCGAAAAACGCATTAGACTCTATAT 58.083 33.333 0.00 0.00 42.26 0.86
5869 6430 9.608617 TCGAAAAACGCATTAGACTCTATATAG 57.391 33.333 3.10 3.10 42.26 1.31
5870 6431 9.608617 CGAAAAACGCATTAGACTCTATATAGA 57.391 33.333 11.94 11.94 34.51 1.98
5873 6434 9.862371 AAAACGCATTAGACTCTATATAGATGG 57.138 33.333 12.86 5.31 0.00 3.51
5874 6435 8.809468 AACGCATTAGACTCTATATAGATGGA 57.191 34.615 12.86 0.00 0.00 3.41
5875 6436 8.809468 ACGCATTAGACTCTATATAGATGGAA 57.191 34.615 12.86 6.07 0.00 3.53
5876 6437 9.244292 ACGCATTAGACTCTATATAGATGGAAA 57.756 33.333 12.86 6.56 0.00 3.13
5877 6438 9.729023 CGCATTAGACTCTATATAGATGGAAAG 57.271 37.037 12.86 3.24 0.00 2.62
5881 6442 9.983024 TTAGACTCTATATAGATGGAAAGAGGG 57.017 37.037 12.86 0.53 35.80 4.30
5882 6443 8.238365 AGACTCTATATAGATGGAAAGAGGGA 57.762 38.462 12.86 0.00 35.80 4.20
5883 6444 8.336235 AGACTCTATATAGATGGAAAGAGGGAG 58.664 40.741 12.86 0.00 35.80 4.30
5884 6445 8.006967 ACTCTATATAGATGGAAAGAGGGAGT 57.993 38.462 12.86 0.46 35.80 3.85
5885 6446 9.129870 ACTCTATATAGATGGAAAGAGGGAGTA 57.870 37.037 12.86 0.00 35.80 2.59
5891 6452 6.120507 AGATGGAAAGAGGGAGTATATTGC 57.879 41.667 0.00 0.00 0.00 3.56
5892 6453 5.848921 AGATGGAAAGAGGGAGTATATTGCT 59.151 40.000 0.00 0.00 0.00 3.91
5893 6454 5.552870 TGGAAAGAGGGAGTATATTGCTC 57.447 43.478 0.00 0.00 0.00 4.26
5894 6455 5.219739 TGGAAAGAGGGAGTATATTGCTCT 58.780 41.667 6.86 0.00 33.73 4.09
5895 6456 5.070981 TGGAAAGAGGGAGTATATTGCTCTG 59.929 44.000 0.00 0.00 33.73 3.35
5896 6457 5.071115 GGAAAGAGGGAGTATATTGCTCTGT 59.929 44.000 0.00 0.00 33.73 3.41
5897 6458 5.543507 AAGAGGGAGTATATTGCTCTGTG 57.456 43.478 0.00 0.00 33.73 3.66
5898 6459 4.551671 AGAGGGAGTATATTGCTCTGTGT 58.448 43.478 0.00 0.00 33.73 3.72
5899 6460 4.343526 AGAGGGAGTATATTGCTCTGTGTG 59.656 45.833 0.00 0.00 33.73 3.82
5900 6461 4.290093 AGGGAGTATATTGCTCTGTGTGA 58.710 43.478 6.86 0.00 33.73 3.58
5901 6462 4.100189 AGGGAGTATATTGCTCTGTGTGAC 59.900 45.833 6.86 0.00 33.73 3.67
5902 6463 4.045104 GGAGTATATTGCTCTGTGTGACG 58.955 47.826 6.86 0.00 33.73 4.35
5903 6464 4.045104 GAGTATATTGCTCTGTGTGACGG 58.955 47.826 0.00 0.00 0.00 4.79
5904 6465 2.315925 ATATTGCTCTGTGTGACGGG 57.684 50.000 0.00 0.00 0.00 5.28
5905 6466 0.391130 TATTGCTCTGTGTGACGGGC 60.391 55.000 0.00 0.00 0.00 6.13
5906 6467 4.662961 TGCTCTGTGTGACGGGCG 62.663 66.667 0.00 0.00 0.00 6.13
5908 6469 3.991051 CTCTGTGTGACGGGCGGT 61.991 66.667 0.00 0.00 0.00 5.68
5909 6470 4.293648 TCTGTGTGACGGGCGGTG 62.294 66.667 1.11 0.00 0.00 4.94
5912 6473 4.367023 GTGTGACGGGCGGTGCTA 62.367 66.667 1.11 0.00 0.00 3.49
5913 6474 3.387091 TGTGACGGGCGGTGCTAT 61.387 61.111 1.11 0.00 0.00 2.97
5914 6475 2.053277 TGTGACGGGCGGTGCTATA 61.053 57.895 1.11 0.00 0.00 1.31
5915 6476 1.590792 GTGACGGGCGGTGCTATAC 60.591 63.158 1.11 0.00 0.00 1.47
5916 6477 2.053277 TGACGGGCGGTGCTATACA 61.053 57.895 1.11 0.00 0.00 2.29
5926 6487 1.560923 GTGCTATACACCGCTCACTG 58.439 55.000 0.00 0.00 44.02 3.66
5927 6488 0.179111 TGCTATACACCGCTCACTGC 60.179 55.000 0.00 0.00 38.57 4.40
5936 6497 4.047030 GCTCACTGCGCGAAAATG 57.953 55.556 12.10 0.00 0.00 2.32
5937 6498 1.497278 GCTCACTGCGCGAAAATGA 59.503 52.632 12.10 5.25 0.00 2.57
5938 6499 0.097674 GCTCACTGCGCGAAAATGAT 59.902 50.000 12.10 0.00 0.00 2.45
5939 6500 1.853646 GCTCACTGCGCGAAAATGATC 60.854 52.381 12.10 0.00 0.00 2.92
5940 6501 0.726827 TCACTGCGCGAAAATGATCC 59.273 50.000 12.10 0.00 0.00 3.36
5941 6502 0.587242 CACTGCGCGAAAATGATCCG 60.587 55.000 12.10 0.00 0.00 4.18
5942 6503 1.019278 ACTGCGCGAAAATGATCCGT 61.019 50.000 12.10 0.00 0.00 4.69
5943 6504 0.096976 CTGCGCGAAAATGATCCGTT 59.903 50.000 12.10 0.00 0.00 4.44
5944 6505 0.096281 TGCGCGAAAATGATCCGTTC 59.904 50.000 12.10 0.00 0.00 3.95
5945 6506 0.919427 GCGCGAAAATGATCCGTTCG 60.919 55.000 12.10 14.68 45.28 3.95
5947 6508 3.509266 CGAAAATGATCCGTTCGCC 57.491 52.632 8.88 0.00 37.88 5.54
5948 6509 1.006832 CGAAAATGATCCGTTCGCCT 58.993 50.000 8.88 0.00 37.88 5.52
5949 6510 1.396996 CGAAAATGATCCGTTCGCCTT 59.603 47.619 8.88 0.00 37.88 4.35
5950 6511 2.159572 CGAAAATGATCCGTTCGCCTTT 60.160 45.455 8.88 0.00 37.88 3.11
5951 6512 3.062909 CGAAAATGATCCGTTCGCCTTTA 59.937 43.478 8.88 0.00 37.88 1.85
5952 6513 4.588278 GAAAATGATCCGTTCGCCTTTAG 58.412 43.478 0.00 0.00 0.00 1.85
5953 6514 1.583054 ATGATCCGTTCGCCTTTAGC 58.417 50.000 0.00 0.00 38.52 3.09
5962 6523 3.184206 GCCTTTAGCGAAACCCGG 58.816 61.111 0.00 0.00 39.04 5.73
5963 6524 3.047718 GCCTTTAGCGAAACCCGGC 62.048 63.158 0.00 5.51 39.04 6.13
5964 6525 1.673009 CCTTTAGCGAAACCCGGCA 60.673 57.895 0.00 0.00 39.04 5.69
5965 6526 1.029947 CCTTTAGCGAAACCCGGCAT 61.030 55.000 0.00 0.00 39.04 4.40
5966 6527 0.377203 CTTTAGCGAAACCCGGCATC 59.623 55.000 0.00 0.00 39.04 3.91
5967 6528 0.321741 TTTAGCGAAACCCGGCATCA 60.322 50.000 0.00 0.00 39.04 3.07
5968 6529 0.321741 TTAGCGAAACCCGGCATCAA 60.322 50.000 0.00 0.00 39.04 2.57
5969 6530 1.022451 TAGCGAAACCCGGCATCAAC 61.022 55.000 0.00 0.00 39.04 3.18
5970 6531 2.478746 CGAAACCCGGCATCAACG 59.521 61.111 0.00 0.00 33.91 4.10
5978 6539 2.203209 GGCATCAACGGCCCCTAG 60.203 66.667 0.00 0.00 45.87 3.02
5979 6540 2.203209 GCATCAACGGCCCCTAGG 60.203 66.667 0.06 0.06 0.00 3.02
5991 6552 2.437085 CCCCTAGGGCGATTTTTCTT 57.563 50.000 23.84 0.00 35.35 2.52
5992 6553 2.735151 CCCCTAGGGCGATTTTTCTTT 58.265 47.619 23.84 0.00 35.35 2.52
5993 6554 3.096852 CCCCTAGGGCGATTTTTCTTTT 58.903 45.455 23.84 0.00 35.35 2.27
5994 6555 3.119137 CCCCTAGGGCGATTTTTCTTTTG 60.119 47.826 23.84 0.00 35.35 2.44
5995 6556 3.119137 CCCTAGGGCGATTTTTCTTTTGG 60.119 47.826 16.90 0.00 0.00 3.28
5996 6557 3.509967 CCTAGGGCGATTTTTCTTTTGGT 59.490 43.478 0.00 0.00 0.00 3.67
5997 6558 4.021456 CCTAGGGCGATTTTTCTTTTGGTT 60.021 41.667 0.00 0.00 0.00 3.67
5998 6559 4.415881 AGGGCGATTTTTCTTTTGGTTT 57.584 36.364 0.00 0.00 0.00 3.27
5999 6560 4.377021 AGGGCGATTTTTCTTTTGGTTTC 58.623 39.130 0.00 0.00 0.00 2.78
6000 6561 4.100963 AGGGCGATTTTTCTTTTGGTTTCT 59.899 37.500 0.00 0.00 0.00 2.52
6001 6562 4.814234 GGGCGATTTTTCTTTTGGTTTCTT 59.186 37.500 0.00 0.00 0.00 2.52
6002 6563 5.295787 GGGCGATTTTTCTTTTGGTTTCTTT 59.704 36.000 0.00 0.00 0.00 2.52
6003 6564 6.183360 GGGCGATTTTTCTTTTGGTTTCTTTT 60.183 34.615 0.00 0.00 0.00 2.27
6004 6565 6.686679 GGCGATTTTTCTTTTGGTTTCTTTTG 59.313 34.615 0.00 0.00 0.00 2.44
6005 6566 6.686679 GCGATTTTTCTTTTGGTTTCTTTTGG 59.313 34.615 0.00 0.00 0.00 3.28
6006 6567 7.625395 GCGATTTTTCTTTTGGTTTCTTTTGGT 60.625 33.333 0.00 0.00 0.00 3.67
6007 6568 7.691877 CGATTTTTCTTTTGGTTTCTTTTGGTG 59.308 33.333 0.00 0.00 0.00 4.17
6008 6569 5.871465 TTTCTTTTGGTTTCTTTTGGTGC 57.129 34.783 0.00 0.00 0.00 5.01
6009 6570 4.543590 TCTTTTGGTTTCTTTTGGTGCA 57.456 36.364 0.00 0.00 0.00 4.57
6010 6571 4.502962 TCTTTTGGTTTCTTTTGGTGCAG 58.497 39.130 0.00 0.00 0.00 4.41
6011 6572 3.971245 TTTGGTTTCTTTTGGTGCAGT 57.029 38.095 0.00 0.00 0.00 4.40
6012 6573 3.971245 TTGGTTTCTTTTGGTGCAGTT 57.029 38.095 0.00 0.00 0.00 3.16
6013 6574 3.971245 TGGTTTCTTTTGGTGCAGTTT 57.029 38.095 0.00 0.00 0.00 2.66
6014 6575 5.407407 TTGGTTTCTTTTGGTGCAGTTTA 57.593 34.783 0.00 0.00 0.00 2.01
6015 6576 5.606348 TGGTTTCTTTTGGTGCAGTTTAT 57.394 34.783 0.00 0.00 0.00 1.40
6016 6577 5.596845 TGGTTTCTTTTGGTGCAGTTTATC 58.403 37.500 0.00 0.00 0.00 1.75
6017 6578 5.127845 TGGTTTCTTTTGGTGCAGTTTATCA 59.872 36.000 0.00 0.00 0.00 2.15
6018 6579 5.691754 GGTTTCTTTTGGTGCAGTTTATCAG 59.308 40.000 0.00 0.00 0.00 2.90
6019 6580 6.273071 GTTTCTTTTGGTGCAGTTTATCAGT 58.727 36.000 0.00 0.00 0.00 3.41
6020 6581 6.463995 TTCTTTTGGTGCAGTTTATCAGTT 57.536 33.333 0.00 0.00 0.00 3.16
6021 6582 6.463995 TCTTTTGGTGCAGTTTATCAGTTT 57.536 33.333 0.00 0.00 0.00 2.66
6022 6583 7.575414 TCTTTTGGTGCAGTTTATCAGTTTA 57.425 32.000 0.00 0.00 0.00 2.01
6023 6584 8.177119 TCTTTTGGTGCAGTTTATCAGTTTAT 57.823 30.769 0.00 0.00 0.00 1.40
6024 6585 8.637986 TCTTTTGGTGCAGTTTATCAGTTTATT 58.362 29.630 0.00 0.00 0.00 1.40
6025 6586 9.906660 CTTTTGGTGCAGTTTATCAGTTTATTA 57.093 29.630 0.00 0.00 0.00 0.98
6030 6591 9.516314 GGTGCAGTTTATCAGTTTATTATTTCC 57.484 33.333 0.00 0.00 0.00 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
351 364 6.417930 GCTACTGGTTCTTTGTGAATTTGTTC 59.582 38.462 0.00 0.00 36.99 3.18
675 693 3.369410 TATCACCCCGTCGGCCTCT 62.369 63.158 5.50 0.00 33.26 3.69
699 723 9.990868 AACTATACACCCTAATGGAGAAAAATT 57.009 29.630 0.00 0.00 38.00 1.82
772 796 3.373130 GTCCTTGTGAGCCCGTTTATTAC 59.627 47.826 0.00 0.00 0.00 1.89
773 797 3.008157 TGTCCTTGTGAGCCCGTTTATTA 59.992 43.478 0.00 0.00 0.00 0.98
774 798 2.224670 TGTCCTTGTGAGCCCGTTTATT 60.225 45.455 0.00 0.00 0.00 1.40
775 799 1.349688 TGTCCTTGTGAGCCCGTTTAT 59.650 47.619 0.00 0.00 0.00 1.40
776 800 0.759959 TGTCCTTGTGAGCCCGTTTA 59.240 50.000 0.00 0.00 0.00 2.01
777 801 0.110486 ATGTCCTTGTGAGCCCGTTT 59.890 50.000 0.00 0.00 0.00 3.60
778 802 0.321653 GATGTCCTTGTGAGCCCGTT 60.322 55.000 0.00 0.00 0.00 4.44
779 803 1.194781 AGATGTCCTTGTGAGCCCGT 61.195 55.000 0.00 0.00 0.00 5.28
780 804 0.824109 TAGATGTCCTTGTGAGCCCG 59.176 55.000 0.00 0.00 0.00 6.13
781 805 2.171448 ACATAGATGTCCTTGTGAGCCC 59.829 50.000 0.00 0.00 35.87 5.19
782 806 3.201290 CACATAGATGTCCTTGTGAGCC 58.799 50.000 6.97 0.00 41.50 4.70
783 807 3.118629 TCCACATAGATGTCCTTGTGAGC 60.119 47.826 12.07 0.00 41.50 4.26
784 808 4.743057 TCCACATAGATGTCCTTGTGAG 57.257 45.455 12.07 5.44 41.50 3.51
785 809 4.080919 CCTTCCACATAGATGTCCTTGTGA 60.081 45.833 12.07 0.68 41.50 3.58
786 810 4.080919 TCCTTCCACATAGATGTCCTTGTG 60.081 45.833 0.00 0.00 39.39 3.33
787 811 4.104086 TCCTTCCACATAGATGTCCTTGT 58.896 43.478 0.00 0.00 39.39 3.16
788 812 4.760530 TCCTTCCACATAGATGTCCTTG 57.239 45.455 0.00 0.00 39.39 3.61
789 813 6.146760 AGTATCCTTCCACATAGATGTCCTT 58.853 40.000 0.00 0.00 39.39 3.36
790 814 5.721225 AGTATCCTTCCACATAGATGTCCT 58.279 41.667 0.00 0.00 39.39 3.85
791 815 6.268847 AGAAGTATCCTTCCACATAGATGTCC 59.731 42.308 0.00 0.00 46.93 4.02
792 816 7.151308 CAGAAGTATCCTTCCACATAGATGTC 58.849 42.308 0.00 0.00 46.93 3.06
793 817 6.613271 ACAGAAGTATCCTTCCACATAGATGT 59.387 38.462 0.00 0.00 46.93 3.06
794 818 7.060383 ACAGAAGTATCCTTCCACATAGATG 57.940 40.000 0.00 0.00 46.93 2.90
795 819 7.504403 CAACAGAAGTATCCTTCCACATAGAT 58.496 38.462 0.00 0.00 46.93 1.98
796 820 6.630413 GCAACAGAAGTATCCTTCCACATAGA 60.630 42.308 0.00 0.00 46.93 1.98
797 821 5.525378 GCAACAGAAGTATCCTTCCACATAG 59.475 44.000 0.00 0.00 46.93 2.23
798 822 5.428253 GCAACAGAAGTATCCTTCCACATA 58.572 41.667 0.00 0.00 46.93 2.29
799 823 4.265073 GCAACAGAAGTATCCTTCCACAT 58.735 43.478 0.00 0.00 46.93 3.21
800 824 3.674997 GCAACAGAAGTATCCTTCCACA 58.325 45.455 0.00 0.00 46.93 4.17
801 825 2.673368 CGCAACAGAAGTATCCTTCCAC 59.327 50.000 0.00 0.00 46.93 4.02
802 826 2.935238 GCGCAACAGAAGTATCCTTCCA 60.935 50.000 0.30 0.00 46.93 3.53
803 827 1.666189 GCGCAACAGAAGTATCCTTCC 59.334 52.381 0.30 0.00 46.93 3.46
804 828 1.666189 GGCGCAACAGAAGTATCCTTC 59.334 52.381 10.83 0.00 46.23 3.46
805 829 1.739067 GGCGCAACAGAAGTATCCTT 58.261 50.000 10.83 0.00 0.00 3.36
806 830 0.460284 CGGCGCAACAGAAGTATCCT 60.460 55.000 10.83 0.00 0.00 3.24
807 831 0.739813 ACGGCGCAACAGAAGTATCC 60.740 55.000 10.83 0.00 0.00 2.59
808 832 1.076332 AACGGCGCAACAGAAGTATC 58.924 50.000 10.83 0.00 0.00 2.24
809 833 1.519408 AAACGGCGCAACAGAAGTAT 58.481 45.000 10.83 0.00 0.00 2.12
810 834 1.301423 AAAACGGCGCAACAGAAGTA 58.699 45.000 10.83 0.00 0.00 2.24
811 835 1.263217 CTAAAACGGCGCAACAGAAGT 59.737 47.619 10.83 0.00 0.00 3.01
812 836 1.399727 CCTAAAACGGCGCAACAGAAG 60.400 52.381 10.83 0.00 0.00 2.85
813 837 0.589223 CCTAAAACGGCGCAACAGAA 59.411 50.000 10.83 0.00 0.00 3.02
860 884 1.749063 CCTAACCATTTTTCTCGGGGC 59.251 52.381 0.00 0.00 0.00 5.80
957 981 6.329197 CAGGGAGAGGTTGGGTTAGATATTTA 59.671 42.308 0.00 0.00 0.00 1.40
958 982 5.132816 CAGGGAGAGGTTGGGTTAGATATTT 59.867 44.000 0.00 0.00 0.00 1.40
959 983 4.660771 CAGGGAGAGGTTGGGTTAGATATT 59.339 45.833 0.00 0.00 0.00 1.28
960 984 4.077982 TCAGGGAGAGGTTGGGTTAGATAT 60.078 45.833 0.00 0.00 0.00 1.63
982 1006 4.724279 TCATATAAAGGGGAGGGCTTTC 57.276 45.455 0.00 0.00 0.00 2.62
1042 1066 8.604035 GTTCTCTTGCGAATTGTTGAATCTATA 58.396 33.333 0.00 0.00 0.00 1.31
1044 1068 6.426633 TGTTCTCTTGCGAATTGTTGAATCTA 59.573 34.615 0.00 0.00 0.00 1.98
1055 1079 0.512952 GCGTGTGTTCTCTTGCGAAT 59.487 50.000 0.00 0.00 0.00 3.34
1164 1194 6.176975 TCAAGTAAACATTAGATTGGTGCG 57.823 37.500 0.00 0.00 0.00 5.34
1181 1211 8.822805 ACTGGTCAGGAACTAATTAATCAAGTA 58.177 33.333 2.87 0.00 36.02 2.24
1296 1329 3.966026 GAGGTCGTCGCCGAGGTTG 62.966 68.421 6.70 0.00 45.26 3.77
1487 1520 1.470051 GTTGTTGTCCACCCACTTGT 58.530 50.000 0.00 0.00 0.00 3.16
1833 1866 2.362397 GTCCAGCGATATGTCCTTCTGA 59.638 50.000 0.00 0.00 0.00 3.27
1875 1908 4.778415 ACGTAGTGGCTGCTCGCG 62.778 66.667 0.00 0.00 42.51 5.87
2082 2115 3.834013 TTTGTGCATCCGACGGGCA 62.834 57.895 15.25 13.99 34.70 5.36
2142 2175 0.728129 TGTACAGCGCGAAGACGAAG 60.728 55.000 12.10 0.00 42.66 3.79
2286 2319 3.771160 GTCTGGTCATCCGGCGGT 61.771 66.667 27.32 10.72 39.81 5.68
2505 2538 2.568623 AGTAACAACTGCCTCCCTTG 57.431 50.000 0.00 0.00 0.00 3.61
2733 2766 0.038892 TTCGGTGCTTGTAGTCGTCC 60.039 55.000 0.00 0.00 0.00 4.79
2933 2966 5.333875 CGGATCTCGTCGTTGTTCATCTATA 60.334 44.000 0.00 0.00 0.00 1.31
2939 2972 0.876399 TCGGATCTCGTCGTTGTTCA 59.124 50.000 0.00 0.00 40.32 3.18
3263 3298 0.335361 TACGCCTCCTCCTCCTTCTT 59.665 55.000 0.00 0.00 0.00 2.52
3300 3335 6.538742 CCATAACAATCGGTTACTCAGTTGAT 59.461 38.462 0.00 0.00 44.36 2.57
3301 3336 5.872617 CCATAACAATCGGTTACTCAGTTGA 59.127 40.000 0.00 0.00 44.36 3.18
3302 3337 5.642063 ACCATAACAATCGGTTACTCAGTTG 59.358 40.000 0.00 0.00 44.36 3.16
3303 3338 5.801380 ACCATAACAATCGGTTACTCAGTT 58.199 37.500 0.00 0.00 44.36 3.16
3304 3339 5.416271 ACCATAACAATCGGTTACTCAGT 57.584 39.130 0.00 0.00 44.36 3.41
3305 3340 7.039882 ACTAACCATAACAATCGGTTACTCAG 58.960 38.462 0.00 0.00 44.36 3.35
3306 3341 6.938507 ACTAACCATAACAATCGGTTACTCA 58.061 36.000 0.00 0.00 44.36 3.41
3307 3342 7.546667 TGAACTAACCATAACAATCGGTTACTC 59.453 37.037 0.00 0.00 44.36 2.59
3308 3343 7.388437 TGAACTAACCATAACAATCGGTTACT 58.612 34.615 0.00 0.00 44.36 2.24
3309 3344 7.599630 TGAACTAACCATAACAATCGGTTAC 57.400 36.000 0.00 0.00 44.36 2.50
3310 3345 9.887629 TTATGAACTAACCATAACAATCGGTTA 57.112 29.630 0.00 0.00 45.55 2.85
3311 3346 8.795842 TTATGAACTAACCATAACAATCGGTT 57.204 30.769 0.00 0.00 44.98 4.44
3312 3347 8.795842 TTTATGAACTAACCATAACAATCGGT 57.204 30.769 0.00 0.00 36.54 4.69
3323 3358 9.757227 CTGGAAAACAAATTTATGAACTAACCA 57.243 29.630 0.00 0.00 0.00 3.67
3324 3359 9.758651 ACTGGAAAACAAATTTATGAACTAACC 57.241 29.630 0.00 0.00 0.00 2.85
3678 3730 2.519691 AGGATCATAACCTGGGGCATTT 59.480 45.455 0.00 0.00 36.30 2.32
3803 3856 0.095762 GGCGTTAACATTTCCGTCCG 59.904 55.000 6.39 0.00 0.00 4.79
3804 3857 0.448990 GGGCGTTAACATTTCCGTCC 59.551 55.000 6.39 0.00 37.97 4.79
3805 3858 1.135888 GTGGGCGTTAACATTTCCGTC 60.136 52.381 6.39 0.00 0.00 4.79
3892 3945 3.100817 CAAAATCAGCTAATTCGTGCCG 58.899 45.455 0.00 0.00 0.00 5.69
3990 4043 1.595929 CTAAACGCCCACACACCGT 60.596 57.895 0.00 0.00 36.68 4.83
4024 4077 2.017138 TGTGCGTGACTGAAAACTGA 57.983 45.000 0.00 0.00 0.00 3.41
4082 4136 3.992641 TGTGGGAGAGGAGGCGGA 61.993 66.667 0.00 0.00 0.00 5.54
4108 4163 0.249405 CAAAACGCATGGCAACTGGT 60.249 50.000 0.00 0.00 37.61 4.00
4153 4208 1.480789 TGCCATCTGCTTGCAATCAT 58.519 45.000 3.01 0.00 42.00 2.45
4204 4262 7.178805 TGCCATGTATCATGCAAAATATATGGT 59.821 33.333 28.56 9.68 43.58 3.55
4345 4405 1.144969 CGCTACAAGAAAAGGCGTGA 58.855 50.000 0.00 0.00 40.78 4.35
4348 4408 3.495127 TGTAGCGCTACAAGAAAAGGCG 61.495 50.000 40.32 0.00 42.49 5.52
4598 4662 3.799755 CACTTTACTGCGCGCCCC 61.800 66.667 30.77 0.92 0.00 5.80
4638 4705 2.044555 CGTCAGGCCTCGTACCTCA 61.045 63.158 0.00 0.00 34.42 3.86
4660 4727 3.675619 GATAACGCCCACACGCCCT 62.676 63.158 0.00 0.00 36.19 5.19
4735 4808 1.103987 TGGGCAAAACAACTAGCGCA 61.104 50.000 11.47 0.00 45.71 6.09
4779 4852 2.673862 CACGTTCTGTGTGGTGTGTAAA 59.326 45.455 0.00 0.00 43.88 2.01
4802 4875 1.004277 TGGGCGTTAAGAAATCTGCCT 59.996 47.619 8.78 0.00 42.11 4.75
4831 4904 2.344025 GAAAAGGACGCCGATAACTGT 58.656 47.619 0.00 0.00 0.00 3.55
4848 4921 6.884295 ACATCAAGTCCAAATAGATTCCGAAA 59.116 34.615 0.00 0.00 0.00 3.46
4849 4922 6.316140 CACATCAAGTCCAAATAGATTCCGAA 59.684 38.462 0.00 0.00 0.00 4.30
4850 4923 5.817296 CACATCAAGTCCAAATAGATTCCGA 59.183 40.000 0.00 0.00 0.00 4.55
4851 4924 5.586243 ACACATCAAGTCCAAATAGATTCCG 59.414 40.000 0.00 0.00 0.00 4.30
4852 4925 6.678900 GCACACATCAAGTCCAAATAGATTCC 60.679 42.308 0.00 0.00 0.00 3.01
4858 4931 6.403866 AAAAGCACACATCAAGTCCAAATA 57.596 33.333 0.00 0.00 0.00 1.40
4919 5207 7.371936 AGTCTCTACAATAATAACGGATGAGC 58.628 38.462 0.00 0.00 0.00 4.26
5020 5542 0.610232 AGCTGGGGAACTTGCATGAC 60.610 55.000 6.60 0.36 0.00 3.06
5067 5589 3.128764 TCTTGAACAGCGTAGATCGACAT 59.871 43.478 6.77 0.00 42.86 3.06
5076 5598 4.859304 TTTCCTACTCTTGAACAGCGTA 57.141 40.909 0.00 0.00 0.00 4.42
5082 5604 4.456222 GGCCTTCTTTTCCTACTCTTGAAC 59.544 45.833 0.00 0.00 0.00 3.18
5141 5663 3.728385 AGCTGGGAGAAAATAAGTGCT 57.272 42.857 0.00 0.00 0.00 4.40
5142 5664 3.758554 TGAAGCTGGGAGAAAATAAGTGC 59.241 43.478 0.00 0.00 0.00 4.40
5143 5665 6.521151 AATGAAGCTGGGAGAAAATAAGTG 57.479 37.500 0.00 0.00 0.00 3.16
5144 5666 7.890655 ACTAAATGAAGCTGGGAGAAAATAAGT 59.109 33.333 0.00 0.00 0.00 2.24
5145 5667 8.286191 ACTAAATGAAGCTGGGAGAAAATAAG 57.714 34.615 0.00 0.00 0.00 1.73
5146 5668 8.650143 AACTAAATGAAGCTGGGAGAAAATAA 57.350 30.769 0.00 0.00 0.00 1.40
5147 5669 8.109634 AGAACTAAATGAAGCTGGGAGAAAATA 58.890 33.333 0.00 0.00 0.00 1.40
5148 5670 6.950619 AGAACTAAATGAAGCTGGGAGAAAAT 59.049 34.615 0.00 0.00 0.00 1.82
5181 5726 4.209911 CGATAAGTATCACACATGTGGCAG 59.790 45.833 28.64 17.83 45.65 4.85
5349 5903 6.919115 GCAATTTTGTACTCCCTTCGTAAAAA 59.081 34.615 0.00 0.00 0.00 1.94
5351 5905 5.531659 TGCAATTTTGTACTCCCTTCGTAAA 59.468 36.000 0.00 0.00 0.00 2.01
5387 5941 2.573462 TGTCCAGAGGCAGAAAGCTAAT 59.427 45.455 0.00 0.00 44.79 1.73
5402 5963 5.583854 CACTCCTAACAATCTCAATGTCCAG 59.416 44.000 0.00 0.00 0.00 3.86
5432 5993 1.301244 ACAGTGCACGGCAAGAGAG 60.301 57.895 17.33 0.01 41.47 3.20
5433 5994 1.595109 CACAGTGCACGGCAAGAGA 60.595 57.895 17.33 0.00 41.47 3.10
5440 6001 0.521291 CAAATACCCACAGTGCACGG 59.479 55.000 15.82 15.82 0.00 4.94
5441 6002 1.464608 CTCAAATACCCACAGTGCACG 59.535 52.381 12.01 9.15 0.00 5.34
5457 6018 1.911766 GTCCCCGTGTCTCCCTCAA 60.912 63.158 0.00 0.00 0.00 3.02
5458 6019 2.283676 GTCCCCGTGTCTCCCTCA 60.284 66.667 0.00 0.00 0.00 3.86
5483 6044 4.035675 GTGAAGTATGAATGCTACAAGGGC 59.964 45.833 0.00 0.00 0.00 5.19
5484 6045 5.431765 AGTGAAGTATGAATGCTACAAGGG 58.568 41.667 0.00 0.00 0.00 3.95
5485 6046 6.992063 AAGTGAAGTATGAATGCTACAAGG 57.008 37.500 0.00 0.00 0.00 3.61
5486 6047 7.119699 TCCAAAGTGAAGTATGAATGCTACAAG 59.880 37.037 0.00 0.00 0.00 3.16
5487 6048 6.939730 TCCAAAGTGAAGTATGAATGCTACAA 59.060 34.615 0.00 0.00 0.00 2.41
5490 6051 5.580691 CGTCCAAAGTGAAGTATGAATGCTA 59.419 40.000 0.00 0.00 0.00 3.49
5491 6052 4.393062 CGTCCAAAGTGAAGTATGAATGCT 59.607 41.667 0.00 0.00 0.00 3.79
5494 6055 5.995282 TCAACGTCCAAAGTGAAGTATGAAT 59.005 36.000 0.00 0.00 0.00 2.57
5495 6056 5.361427 TCAACGTCCAAAGTGAAGTATGAA 58.639 37.500 0.00 0.00 0.00 2.57
5496 6057 4.951254 TCAACGTCCAAAGTGAAGTATGA 58.049 39.130 0.00 0.00 0.00 2.15
5497 6058 4.988540 TCTCAACGTCCAAAGTGAAGTATG 59.011 41.667 0.00 0.00 0.00 2.39
5499 6060 4.659111 TCTCAACGTCCAAAGTGAAGTA 57.341 40.909 0.00 0.00 0.00 2.24
5500 6061 3.536956 TCTCAACGTCCAAAGTGAAGT 57.463 42.857 0.00 0.00 0.00 3.01
5501 6062 4.273480 ACAATCTCAACGTCCAAAGTGAAG 59.727 41.667 0.00 0.00 0.00 3.02
5502 6063 4.196193 ACAATCTCAACGTCCAAAGTGAA 58.804 39.130 0.00 0.00 0.00 3.18
5503 6064 3.804036 ACAATCTCAACGTCCAAAGTGA 58.196 40.909 0.00 0.00 0.00 3.41
5505 6066 4.755123 CCTAACAATCTCAACGTCCAAAGT 59.245 41.667 0.00 0.00 0.00 2.66
5507 6068 4.963373 TCCTAACAATCTCAACGTCCAAA 58.037 39.130 0.00 0.00 0.00 3.28
5508 6069 4.039973 ACTCCTAACAATCTCAACGTCCAA 59.960 41.667 0.00 0.00 0.00 3.53
5509 6070 3.576982 ACTCCTAACAATCTCAACGTCCA 59.423 43.478 0.00 0.00 0.00 4.02
5510 6071 3.927142 CACTCCTAACAATCTCAACGTCC 59.073 47.826 0.00 0.00 0.00 4.79
5511 6072 4.386049 CACACTCCTAACAATCTCAACGTC 59.614 45.833 0.00 0.00 0.00 4.34
5512 6073 4.038763 TCACACTCCTAACAATCTCAACGT 59.961 41.667 0.00 0.00 0.00 3.99
5514 6075 5.635700 GTCTCACACTCCTAACAATCTCAAC 59.364 44.000 0.00 0.00 0.00 3.18
5515 6076 5.540337 AGTCTCACACTCCTAACAATCTCAA 59.460 40.000 0.00 0.00 0.00 3.02
5516 6077 5.080337 AGTCTCACACTCCTAACAATCTCA 58.920 41.667 0.00 0.00 0.00 3.27
5517 6078 5.646606 GAGTCTCACACTCCTAACAATCTC 58.353 45.833 0.00 0.00 45.47 2.75
5518 6079 5.652994 GAGTCTCACACTCCTAACAATCT 57.347 43.478 0.00 0.00 45.47 2.40
5529 6090 0.600557 CGGCAAGAGAGTCTCACACT 59.399 55.000 22.05 0.00 38.45 3.55
5530 6091 0.315568 ACGGCAAGAGAGTCTCACAC 59.684 55.000 22.05 9.92 32.06 3.82
5531 6092 0.315251 CACGGCAAGAGAGTCTCACA 59.685 55.000 22.05 0.00 32.06 3.58
5532 6093 1.011451 GCACGGCAAGAGAGTCTCAC 61.011 60.000 22.05 10.61 32.06 3.51
5533 6094 1.290324 GCACGGCAAGAGAGTCTCA 59.710 57.895 22.05 0.00 32.06 3.27
5534 6095 1.011451 GTGCACGGCAAGAGAGTCTC 61.011 60.000 12.54 12.54 41.47 3.36
5535 6096 1.005630 GTGCACGGCAAGAGAGTCT 60.006 57.895 0.00 0.00 41.47 3.24
5536 6097 1.005630 AGTGCACGGCAAGAGAGTC 60.006 57.895 12.01 0.00 41.47 3.36
5537 6098 1.301244 CAGTGCACGGCAAGAGAGT 60.301 57.895 12.01 0.00 41.47 3.24
5538 6099 1.301244 ACAGTGCACGGCAAGAGAG 60.301 57.895 17.33 0.01 41.47 3.20
5539 6100 1.595109 CACAGTGCACGGCAAGAGA 60.595 57.895 17.33 0.00 41.47 3.10
5540 6101 2.610694 CCACAGTGCACGGCAAGAG 61.611 63.158 17.33 2.35 41.47 2.85
5541 6102 2.591429 CCACAGTGCACGGCAAGA 60.591 61.111 17.33 0.00 41.47 3.02
5542 6103 3.663176 CCCACAGTGCACGGCAAG 61.663 66.667 17.33 7.25 41.47 4.01
5543 6104 2.404566 ATACCCACAGTGCACGGCAA 62.405 55.000 17.33 2.04 41.47 4.52
5544 6105 2.404566 AATACCCACAGTGCACGGCA 62.405 55.000 17.33 0.00 35.60 5.69
5545 6106 1.241315 AAATACCCACAGTGCACGGC 61.241 55.000 17.33 0.00 0.00 5.68
5546 6107 0.521291 CAAATACCCACAGTGCACGG 59.479 55.000 15.82 15.82 0.00 4.94
5547 6108 1.464608 CTCAAATACCCACAGTGCACG 59.535 52.381 12.01 9.15 0.00 5.34
5548 6109 1.812571 CCTCAAATACCCACAGTGCAC 59.187 52.381 9.40 9.40 0.00 4.57
5549 6110 1.271871 CCCTCAAATACCCACAGTGCA 60.272 52.381 0.00 0.00 0.00 4.57
5550 6111 1.004277 TCCCTCAAATACCCACAGTGC 59.996 52.381 0.00 0.00 0.00 4.40
5551 6112 2.571653 TCTCCCTCAAATACCCACAGTG 59.428 50.000 0.00 0.00 0.00 3.66
5552 6113 2.572104 GTCTCCCTCAAATACCCACAGT 59.428 50.000 0.00 0.00 0.00 3.55
5553 6114 2.571653 TGTCTCCCTCAAATACCCACAG 59.428 50.000 0.00 0.00 0.00 3.66
5554 6115 2.304761 GTGTCTCCCTCAAATACCCACA 59.695 50.000 0.00 0.00 0.00 4.17
5555 6116 2.677037 CGTGTCTCCCTCAAATACCCAC 60.677 54.545 0.00 0.00 0.00 4.61
5556 6117 1.553248 CGTGTCTCCCTCAAATACCCA 59.447 52.381 0.00 0.00 0.00 4.51
5557 6118 1.134491 CCGTGTCTCCCTCAAATACCC 60.134 57.143 0.00 0.00 0.00 3.69
5558 6119 1.134491 CCCGTGTCTCCCTCAAATACC 60.134 57.143 0.00 0.00 0.00 2.73
5559 6120 1.134491 CCCCGTGTCTCCCTCAAATAC 60.134 57.143 0.00 0.00 0.00 1.89
5560 6121 1.200519 CCCCGTGTCTCCCTCAAATA 58.799 55.000 0.00 0.00 0.00 1.40
5561 6122 0.546747 TCCCCGTGTCTCCCTCAAAT 60.547 55.000 0.00 0.00 0.00 2.32
5562 6123 1.152204 TCCCCGTGTCTCCCTCAAA 60.152 57.895 0.00 0.00 0.00 2.69
5563 6124 1.911766 GTCCCCGTGTCTCCCTCAA 60.912 63.158 0.00 0.00 0.00 3.02
5564 6125 2.283676 GTCCCCGTGTCTCCCTCA 60.284 66.667 0.00 0.00 0.00 3.86
5565 6126 2.037527 AGTCCCCGTGTCTCCCTC 59.962 66.667 0.00 0.00 0.00 4.30
5566 6127 2.283966 CAGTCCCCGTGTCTCCCT 60.284 66.667 0.00 0.00 0.00 4.20
5567 6128 4.083862 GCAGTCCCCGTGTCTCCC 62.084 72.222 0.00 0.00 0.00 4.30
5568 6129 3.302347 CTGCAGTCCCCGTGTCTCC 62.302 68.421 5.25 0.00 0.00 3.71
5569 6130 2.262915 CTGCAGTCCCCGTGTCTC 59.737 66.667 5.25 0.00 0.00 3.36
5570 6131 3.314331 CCTGCAGTCCCCGTGTCT 61.314 66.667 13.81 0.00 0.00 3.41
5571 6132 3.626924 ACCTGCAGTCCCCGTGTC 61.627 66.667 13.81 0.00 0.00 3.67
5572 6133 3.941188 CACCTGCAGTCCCCGTGT 61.941 66.667 13.81 0.00 0.00 4.49
5590 6151 5.431765 AGTGAAGTATGAATGCTACAAGGG 58.568 41.667 0.00 0.00 0.00 3.95
5605 6166 4.819630 CCTAACTTGTGCCAAAGTGAAGTA 59.180 41.667 2.19 0.00 40.28 2.24
5616 6177 0.253327 CCCTCTCCCTAACTTGTGCC 59.747 60.000 0.00 0.00 0.00 5.01
5617 6178 0.393132 GCCCTCTCCCTAACTTGTGC 60.393 60.000 0.00 0.00 0.00 4.57
5648 6209 7.125391 AGCTCTATATAGATGAAAGGAGGGAG 58.875 42.308 12.86 0.00 0.00 4.30
5649 6210 7.050493 AGCTCTATATAGATGAAAGGAGGGA 57.950 40.000 12.86 0.00 0.00 4.20
5650 6211 8.830915 TTAGCTCTATATAGATGAAAGGAGGG 57.169 38.462 12.86 0.00 0.00 4.30
5757 6318 6.801862 CCTTCAAATTCGTATGACAAAGGAAC 59.198 38.462 0.00 0.00 0.00 3.62
5758 6319 6.488683 ACCTTCAAATTCGTATGACAAAGGAA 59.511 34.615 13.11 0.00 29.60 3.36
5759 6320 6.001460 ACCTTCAAATTCGTATGACAAAGGA 58.999 36.000 13.11 0.00 29.60 3.36
5760 6321 6.254281 ACCTTCAAATTCGTATGACAAAGG 57.746 37.500 0.00 0.00 30.71 3.11
5761 6322 7.429340 GCATACCTTCAAATTCGTATGACAAAG 59.571 37.037 9.60 0.00 40.20 2.77
5762 6323 7.120579 AGCATACCTTCAAATTCGTATGACAAA 59.879 33.333 9.60 0.00 40.20 2.83
5763 6324 6.597672 AGCATACCTTCAAATTCGTATGACAA 59.402 34.615 9.60 0.00 40.20 3.18
5764 6325 6.112734 AGCATACCTTCAAATTCGTATGACA 58.887 36.000 9.60 0.00 40.20 3.58
5765 6326 6.604735 AGCATACCTTCAAATTCGTATGAC 57.395 37.500 9.60 2.65 40.20 3.06
5778 6339 4.435651 GCAACTTACACGAAGCATACCTTC 60.436 45.833 0.00 0.00 45.26 3.46
5779 6340 3.435671 GCAACTTACACGAAGCATACCTT 59.564 43.478 0.00 0.00 38.92 3.50
5780 6341 3.000727 GCAACTTACACGAAGCATACCT 58.999 45.455 0.00 0.00 38.92 3.08
5781 6342 2.739913 TGCAACTTACACGAAGCATACC 59.260 45.455 0.00 0.00 38.92 2.73
5782 6343 4.142902 ACATGCAACTTACACGAAGCATAC 60.143 41.667 0.00 0.00 40.38 2.39
5783 6344 4.000325 ACATGCAACTTACACGAAGCATA 59.000 39.130 0.00 0.00 40.38 3.14
5784 6345 2.813754 ACATGCAACTTACACGAAGCAT 59.186 40.909 0.00 0.00 42.82 3.79
5785 6346 2.217750 ACATGCAACTTACACGAAGCA 58.782 42.857 0.00 0.00 38.92 3.91
5786 6347 2.223144 TGACATGCAACTTACACGAAGC 59.777 45.455 0.00 0.00 38.92 3.86
5787 6348 4.668576 ATGACATGCAACTTACACGAAG 57.331 40.909 0.00 0.00 41.37 3.79
5788 6349 8.432110 AATATATGACATGCAACTTACACGAA 57.568 30.769 0.00 0.00 0.00 3.85
5789 6350 9.705290 ATAATATATGACATGCAACTTACACGA 57.295 29.630 0.00 0.00 0.00 4.35
5811 6372 9.830975 ACTTTGACCAAACTTTAAAGCAATAAT 57.169 25.926 15.24 0.00 32.97 1.28
5812 6373 9.660180 AACTTTGACCAAACTTTAAAGCAATAA 57.340 25.926 15.24 0.00 32.97 1.40
5814 6375 9.660180 TTAACTTTGACCAAACTTTAAAGCAAT 57.340 25.926 15.24 0.00 32.97 3.56
5815 6376 8.927721 GTTAACTTTGACCAAACTTTAAAGCAA 58.072 29.630 15.24 7.27 32.97 3.91
5816 6377 8.088981 TGTTAACTTTGACCAAACTTTAAAGCA 58.911 29.630 15.24 1.18 32.97 3.91
5817 6378 8.468720 TGTTAACTTTGACCAAACTTTAAAGC 57.531 30.769 15.24 0.00 32.97 3.51
5819 6380 9.291664 CGATGTTAACTTTGACCAAACTTTAAA 57.708 29.630 7.22 0.00 0.00 1.52
5820 6381 8.675504 TCGATGTTAACTTTGACCAAACTTTAA 58.324 29.630 7.22 0.00 0.00 1.52
5821 6382 8.211116 TCGATGTTAACTTTGACCAAACTTTA 57.789 30.769 7.22 0.00 0.00 1.85
5822 6383 7.090953 TCGATGTTAACTTTGACCAAACTTT 57.909 32.000 7.22 0.00 0.00 2.66
5823 6384 6.687081 TCGATGTTAACTTTGACCAAACTT 57.313 33.333 7.22 0.00 0.00 2.66
5824 6385 6.687081 TTCGATGTTAACTTTGACCAAACT 57.313 33.333 10.24 0.00 0.00 2.66
5825 6386 7.743520 TTTTCGATGTTAACTTTGACCAAAC 57.256 32.000 10.24 0.00 0.00 2.93
5826 6387 7.008447 CGTTTTTCGATGTTAACTTTGACCAAA 59.992 33.333 10.24 9.70 42.86 3.28
5827 6388 6.469595 CGTTTTTCGATGTTAACTTTGACCAA 59.530 34.615 10.24 5.18 42.86 3.67
5828 6389 5.966503 CGTTTTTCGATGTTAACTTTGACCA 59.033 36.000 10.24 0.00 42.86 4.02
5829 6390 5.108518 GCGTTTTTCGATGTTAACTTTGACC 60.109 40.000 10.24 0.97 42.86 4.02
5830 6391 5.452944 TGCGTTTTTCGATGTTAACTTTGAC 59.547 36.000 10.24 1.12 42.86 3.18
5831 6392 5.570344 TGCGTTTTTCGATGTTAACTTTGA 58.430 33.333 7.22 7.22 42.86 2.69
5832 6393 5.858159 TGCGTTTTTCGATGTTAACTTTG 57.142 34.783 7.22 4.81 42.86 2.77
5833 6394 8.071368 TCTAATGCGTTTTTCGATGTTAACTTT 58.929 29.630 7.22 0.00 42.86 2.66
5834 6395 7.532884 GTCTAATGCGTTTTTCGATGTTAACTT 59.467 33.333 7.22 0.00 42.86 2.66
5835 6396 7.013529 GTCTAATGCGTTTTTCGATGTTAACT 58.986 34.615 7.22 0.00 42.86 2.24
5836 6397 7.013529 AGTCTAATGCGTTTTTCGATGTTAAC 58.986 34.615 0.00 0.00 42.86 2.01
5837 6398 7.117236 AGAGTCTAATGCGTTTTTCGATGTTAA 59.883 33.333 0.00 0.00 42.86 2.01
5838 6399 6.588756 AGAGTCTAATGCGTTTTTCGATGTTA 59.411 34.615 0.00 0.00 42.86 2.41
5839 6400 5.408604 AGAGTCTAATGCGTTTTTCGATGTT 59.591 36.000 0.00 0.00 42.86 2.71
5840 6401 4.929808 AGAGTCTAATGCGTTTTTCGATGT 59.070 37.500 0.00 0.00 42.86 3.06
5841 6402 5.456192 AGAGTCTAATGCGTTTTTCGATG 57.544 39.130 0.00 0.00 42.86 3.84
5843 6404 9.608617 CTATATAGAGTCTAATGCGTTTTTCGA 57.391 33.333 3.45 0.00 42.86 3.71
5844 6405 9.608617 TCTATATAGAGTCTAATGCGTTTTTCG 57.391 33.333 8.44 0.00 43.12 3.46
5847 6408 9.862371 CCATCTATATAGAGTCTAATGCGTTTT 57.138 33.333 17.22 0.00 35.50 2.43
5848 6409 9.244292 TCCATCTATATAGAGTCTAATGCGTTT 57.756 33.333 17.22 0.00 35.50 3.60
5849 6410 8.809468 TCCATCTATATAGAGTCTAATGCGTT 57.191 34.615 17.22 0.00 35.50 4.84
5850 6411 8.809468 TTCCATCTATATAGAGTCTAATGCGT 57.191 34.615 17.22 0.00 35.50 5.24
5851 6412 9.729023 CTTTCCATCTATATAGAGTCTAATGCG 57.271 37.037 17.22 5.24 35.50 4.73
5855 6416 9.983024 CCCTCTTTCCATCTATATAGAGTCTAA 57.017 37.037 17.22 8.63 35.50 2.10
5856 6417 9.352839 TCCCTCTTTCCATCTATATAGAGTCTA 57.647 37.037 17.22 1.45 35.50 2.59
5857 6418 8.238365 TCCCTCTTTCCATCTATATAGAGTCT 57.762 38.462 17.22 0.00 35.50 3.24
5858 6419 8.113462 ACTCCCTCTTTCCATCTATATAGAGTC 58.887 40.741 17.22 0.00 35.50 3.36
5859 6420 8.006967 ACTCCCTCTTTCCATCTATATAGAGT 57.993 38.462 17.22 3.20 35.50 3.24
5865 6426 8.982723 GCAATATACTCCCTCTTTCCATCTATA 58.017 37.037 0.00 0.00 0.00 1.31
5866 6427 7.682028 AGCAATATACTCCCTCTTTCCATCTAT 59.318 37.037 0.00 0.00 0.00 1.98
5867 6428 7.019388 AGCAATATACTCCCTCTTTCCATCTA 58.981 38.462 0.00 0.00 0.00 1.98
5868 6429 5.848921 AGCAATATACTCCCTCTTTCCATCT 59.151 40.000 0.00 0.00 0.00 2.90
5869 6430 6.013812 AGAGCAATATACTCCCTCTTTCCATC 60.014 42.308 2.78 0.00 34.56 3.51
5870 6431 5.848921 AGAGCAATATACTCCCTCTTTCCAT 59.151 40.000 2.78 0.00 34.56 3.41
5871 6432 5.070981 CAGAGCAATATACTCCCTCTTTCCA 59.929 44.000 2.78 0.00 34.56 3.53
5872 6433 5.071115 ACAGAGCAATATACTCCCTCTTTCC 59.929 44.000 2.78 0.00 34.56 3.13
5873 6434 5.988561 CACAGAGCAATATACTCCCTCTTTC 59.011 44.000 2.78 0.00 34.56 2.62
5874 6435 5.426833 ACACAGAGCAATATACTCCCTCTTT 59.573 40.000 2.78 0.00 34.56 2.52
5875 6436 4.965532 ACACAGAGCAATATACTCCCTCTT 59.034 41.667 2.78 0.00 34.56 2.85
5876 6437 4.343526 CACACAGAGCAATATACTCCCTCT 59.656 45.833 2.78 0.00 34.56 3.69
5877 6438 4.342378 TCACACAGAGCAATATACTCCCTC 59.658 45.833 2.78 0.00 34.56 4.30
5878 6439 4.100189 GTCACACAGAGCAATATACTCCCT 59.900 45.833 2.78 0.00 34.56 4.20
5879 6440 4.372656 GTCACACAGAGCAATATACTCCC 58.627 47.826 2.78 0.00 34.56 4.30
5880 6441 4.045104 CGTCACACAGAGCAATATACTCC 58.955 47.826 2.78 0.00 34.56 3.85
5881 6442 4.045104 CCGTCACACAGAGCAATATACTC 58.955 47.826 0.00 0.00 0.00 2.59
5882 6443 3.181475 CCCGTCACACAGAGCAATATACT 60.181 47.826 0.00 0.00 0.00 2.12
5883 6444 3.123804 CCCGTCACACAGAGCAATATAC 58.876 50.000 0.00 0.00 0.00 1.47
5884 6445 2.483013 GCCCGTCACACAGAGCAATATA 60.483 50.000 0.00 0.00 0.00 0.86
5885 6446 1.743772 GCCCGTCACACAGAGCAATAT 60.744 52.381 0.00 0.00 0.00 1.28
5886 6447 0.391130 GCCCGTCACACAGAGCAATA 60.391 55.000 0.00 0.00 0.00 1.90
5887 6448 1.672356 GCCCGTCACACAGAGCAAT 60.672 57.895 0.00 0.00 0.00 3.56
5888 6449 2.280797 GCCCGTCACACAGAGCAA 60.281 61.111 0.00 0.00 0.00 3.91
5889 6450 4.662961 CGCCCGTCACACAGAGCA 62.663 66.667 0.00 0.00 0.00 4.26
5891 6452 3.991051 ACCGCCCGTCACACAGAG 61.991 66.667 0.00 0.00 0.00 3.35
5892 6453 4.293648 CACCGCCCGTCACACAGA 62.294 66.667 0.00 0.00 0.00 3.41
5895 6456 2.287457 TATAGCACCGCCCGTCACAC 62.287 60.000 0.00 0.00 0.00 3.82
5896 6457 2.053277 TATAGCACCGCCCGTCACA 61.053 57.895 0.00 0.00 0.00 3.58
5897 6458 1.590792 GTATAGCACCGCCCGTCAC 60.591 63.158 0.00 0.00 0.00 3.67
5898 6459 2.053277 TGTATAGCACCGCCCGTCA 61.053 57.895 0.00 0.00 0.00 4.35
5899 6460 1.590792 GTGTATAGCACCGCCCGTC 60.591 63.158 0.00 0.00 42.10 4.79
5900 6461 2.497770 GTGTATAGCACCGCCCGT 59.502 61.111 0.00 0.00 42.10 5.28
5907 6468 1.560923 CAGTGAGCGGTGTATAGCAC 58.439 55.000 0.00 0.00 46.97 4.40
5908 6469 0.179111 GCAGTGAGCGGTGTATAGCA 60.179 55.000 0.00 0.00 35.48 3.49
5909 6470 2.594541 GCAGTGAGCGGTGTATAGC 58.405 57.895 0.00 0.00 0.00 2.97
5922 6483 0.587242 CGGATCATTTTCGCGCAGTG 60.587 55.000 8.75 0.00 40.84 3.66
5923 6484 1.019278 ACGGATCATTTTCGCGCAGT 61.019 50.000 8.75 0.00 0.00 4.40
5924 6485 0.096976 AACGGATCATTTTCGCGCAG 59.903 50.000 8.75 0.00 0.00 5.18
5925 6486 0.096281 GAACGGATCATTTTCGCGCA 59.904 50.000 8.75 0.00 0.00 6.09
5926 6487 0.919427 CGAACGGATCATTTTCGCGC 60.919 55.000 0.00 0.00 36.09 6.86
5927 6488 3.113122 CGAACGGATCATTTTCGCG 57.887 52.632 0.00 0.00 36.09 5.87
5929 6490 1.006832 AGGCGAACGGATCATTTTCG 58.993 50.000 14.78 14.78 43.92 3.46
5930 6491 3.487563 AAAGGCGAACGGATCATTTTC 57.512 42.857 0.00 0.00 0.00 2.29
5931 6492 3.181500 GCTAAAGGCGAACGGATCATTTT 60.181 43.478 0.00 0.00 0.00 1.82
5932 6493 2.354821 GCTAAAGGCGAACGGATCATTT 59.645 45.455 0.00 0.00 0.00 2.32
5933 6494 1.940613 GCTAAAGGCGAACGGATCATT 59.059 47.619 0.00 0.00 0.00 2.57
5934 6495 1.583054 GCTAAAGGCGAACGGATCAT 58.417 50.000 0.00 0.00 0.00 2.45
5935 6496 3.059603 GCTAAAGGCGAACGGATCA 57.940 52.632 0.00 0.00 0.00 2.92
5945 6506 3.047718 GCCGGGTTTCGCTAAAGGC 62.048 63.158 2.18 0.00 37.59 4.35
5946 6507 1.029947 ATGCCGGGTTTCGCTAAAGG 61.030 55.000 2.18 0.00 37.59 3.11
5947 6508 0.377203 GATGCCGGGTTTCGCTAAAG 59.623 55.000 2.18 0.00 37.59 1.85
5948 6509 0.321741 TGATGCCGGGTTTCGCTAAA 60.322 50.000 2.18 0.00 37.59 1.85
5949 6510 0.321741 TTGATGCCGGGTTTCGCTAA 60.322 50.000 2.18 0.00 37.59 3.09
5950 6511 1.022451 GTTGATGCCGGGTTTCGCTA 61.022 55.000 2.18 0.00 37.59 4.26
5951 6512 2.033448 TTGATGCCGGGTTTCGCT 59.967 55.556 2.18 0.00 37.59 4.93
5952 6513 2.178273 GTTGATGCCGGGTTTCGC 59.822 61.111 2.18 0.00 37.59 4.70
5953 6514 2.478746 CGTTGATGCCGGGTTTCG 59.521 61.111 2.18 0.00 38.88 3.46
5954 6515 2.874751 CCGTTGATGCCGGGTTTC 59.125 61.111 2.18 0.00 41.78 2.78
5955 6516 3.370231 GCCGTTGATGCCGGGTTT 61.370 61.111 2.18 0.00 45.57 3.27
5962 6523 2.203209 CCTAGGGGCCGTTGATGC 60.203 66.667 3.09 0.00 0.00 3.91
5963 6524 2.510906 CCCTAGGGGCCGTTGATG 59.489 66.667 21.44 0.00 35.35 3.07
5973 6534 3.119137 CCAAAAGAAAAATCGCCCTAGGG 60.119 47.826 24.89 24.89 38.57 3.53
5974 6535 3.509967 ACCAAAAGAAAAATCGCCCTAGG 59.490 43.478 0.06 0.06 0.00 3.02
5975 6536 4.783764 ACCAAAAGAAAAATCGCCCTAG 57.216 40.909 0.00 0.00 0.00 3.02
5976 6537 5.303333 AGAAACCAAAAGAAAAATCGCCCTA 59.697 36.000 0.00 0.00 0.00 3.53
5977 6538 4.100963 AGAAACCAAAAGAAAAATCGCCCT 59.899 37.500 0.00 0.00 0.00 5.19
5978 6539 4.377021 AGAAACCAAAAGAAAAATCGCCC 58.623 39.130 0.00 0.00 0.00 6.13
5979 6540 5.984233 AAGAAACCAAAAGAAAAATCGCC 57.016 34.783 0.00 0.00 0.00 5.54
5980 6541 6.686679 CCAAAAGAAACCAAAAGAAAAATCGC 59.313 34.615 0.00 0.00 0.00 4.58
5981 6542 7.691877 CACCAAAAGAAACCAAAAGAAAAATCG 59.308 33.333 0.00 0.00 0.00 3.34
5982 6543 7.484641 GCACCAAAAGAAACCAAAAGAAAAATC 59.515 33.333 0.00 0.00 0.00 2.17
5983 6544 7.040132 TGCACCAAAAGAAACCAAAAGAAAAAT 60.040 29.630 0.00 0.00 0.00 1.82
5984 6545 6.263168 TGCACCAAAAGAAACCAAAAGAAAAA 59.737 30.769 0.00 0.00 0.00 1.94
5985 6546 5.765182 TGCACCAAAAGAAACCAAAAGAAAA 59.235 32.000 0.00 0.00 0.00 2.29
5986 6547 5.308825 TGCACCAAAAGAAACCAAAAGAAA 58.691 33.333 0.00 0.00 0.00 2.52
5987 6548 4.899502 TGCACCAAAAGAAACCAAAAGAA 58.100 34.783 0.00 0.00 0.00 2.52
5988 6549 4.020662 ACTGCACCAAAAGAAACCAAAAGA 60.021 37.500 0.00 0.00 0.00 2.52
5989 6550 4.252878 ACTGCACCAAAAGAAACCAAAAG 58.747 39.130 0.00 0.00 0.00 2.27
5990 6551 4.278975 ACTGCACCAAAAGAAACCAAAA 57.721 36.364 0.00 0.00 0.00 2.44
5991 6552 3.971245 ACTGCACCAAAAGAAACCAAA 57.029 38.095 0.00 0.00 0.00 3.28
5992 6553 3.971245 AACTGCACCAAAAGAAACCAA 57.029 38.095 0.00 0.00 0.00 3.67
5993 6554 3.971245 AAACTGCACCAAAAGAAACCA 57.029 38.095 0.00 0.00 0.00 3.67
5994 6555 5.596845 TGATAAACTGCACCAAAAGAAACC 58.403 37.500 0.00 0.00 0.00 3.27
5995 6556 6.273071 ACTGATAAACTGCACCAAAAGAAAC 58.727 36.000 0.00 0.00 0.00 2.78
5996 6557 6.463995 ACTGATAAACTGCACCAAAAGAAA 57.536 33.333 0.00 0.00 0.00 2.52
5997 6558 6.463995 AACTGATAAACTGCACCAAAAGAA 57.536 33.333 0.00 0.00 0.00 2.52
5998 6559 6.463995 AAACTGATAAACTGCACCAAAAGA 57.536 33.333 0.00 0.00 0.00 2.52
5999 6560 8.816640 AATAAACTGATAAACTGCACCAAAAG 57.183 30.769 0.00 0.00 0.00 2.27
6004 6565 9.516314 GGAAATAATAAACTGATAAACTGCACC 57.484 33.333 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.