Multiple sequence alignment - TraesCS7A01G256600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G256600 chr7A 100.000 3473 0 0 1 3473 245593974 245597446 0.000000e+00 6414.0
1 TraesCS7A01G256600 chr7A 76.239 585 87 31 2754 3307 487355177 487355740 2.660000e-66 263.0
2 TraesCS7A01G256600 chr7A 88.732 71 4 4 3405 3473 21831080 21831012 2.220000e-12 84.2
3 TraesCS7A01G256600 chr7D 94.042 2887 99 30 573 3396 233214851 233211975 0.000000e+00 4311.0
4 TraesCS7A01G256600 chr7D 87.179 78 9 1 3178 3255 358485067 358484991 1.720000e-13 87.9
5 TraesCS7A01G256600 chr7B 93.426 2799 95 26 501 3243 204687837 204685072 0.000000e+00 4067.0
6 TraesCS7A01G256600 chr5A 84.537 1371 169 25 1042 2389 490816647 490815297 0.000000e+00 1317.0
7 TraesCS7A01G256600 chr5B 84.307 1370 169 24 1043 2389 466334002 466332656 0.000000e+00 1297.0
8 TraesCS7A01G256600 chr5B 93.750 64 4 0 3403 3466 439355718 439355781 2.850000e-16 97.1
9 TraesCS7A01G256600 chr5D 84.015 1370 176 26 1043 2389 387729260 387727911 0.000000e+00 1277.0
10 TraesCS7A01G256600 chr5D 92.188 64 5 0 3403 3466 117842757 117842694 1.330000e-14 91.6
11 TraesCS7A01G256600 chr5D 87.324 71 9 0 3403 3473 117895523 117895453 7.990000e-12 82.4
12 TraesCS7A01G256600 chr6B 78.773 1027 193 23 1363 2380 660564111 660563101 0.000000e+00 665.0
13 TraesCS7A01G256600 chr3D 77.568 584 81 28 2754 3307 275694089 275694652 1.210000e-79 307.0
14 TraesCS7A01G256600 chr3D 91.935 62 5 0 3405 3466 33061272 33061333 1.720000e-13 87.9
15 TraesCS7A01G256600 chr4B 77.568 584 80 31 2754 3307 217812353 217811791 4.350000e-79 305.0
16 TraesCS7A01G256600 chr4B 92.188 64 5 0 3403 3466 459521054 459521117 1.330000e-14 91.6
17 TraesCS7A01G256600 chr6D 77.615 478 63 22 2856 3307 208860809 208861268 2.070000e-62 250.0
18 TraesCS7A01G256600 chr6D 75.064 389 77 15 127 499 404606470 404606854 2.770000e-36 163.0
19 TraesCS7A01G256600 chr6D 79.365 189 38 1 86 273 404606363 404606551 7.820000e-27 132.0
20 TraesCS7A01G256600 chrUn 79.747 158 31 1 86 242 45519056 45518899 2.830000e-21 113.0
21 TraesCS7A01G256600 chr2D 92.308 65 5 0 3403 3467 7164847 7164911 3.690000e-15 93.5
22 TraesCS7A01G256600 chr2D 92.308 65 5 0 3402 3466 585369529 585369593 3.690000e-15 93.5
23 TraesCS7A01G256600 chr3A 92.188 64 5 0 3403 3466 450311097 450311034 1.330000e-14 91.6
24 TraesCS7A01G256600 chr1B 84.810 79 10 2 3178 3255 228575726 228575803 1.030000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G256600 chr7A 245593974 245597446 3472 False 6414 6414 100.000 1 3473 1 chr7A.!!$F1 3472
1 TraesCS7A01G256600 chr7A 487355177 487355740 563 False 263 263 76.239 2754 3307 1 chr7A.!!$F2 553
2 TraesCS7A01G256600 chr7D 233211975 233214851 2876 True 4311 4311 94.042 573 3396 1 chr7D.!!$R1 2823
3 TraesCS7A01G256600 chr7B 204685072 204687837 2765 True 4067 4067 93.426 501 3243 1 chr7B.!!$R1 2742
4 TraesCS7A01G256600 chr5A 490815297 490816647 1350 True 1317 1317 84.537 1042 2389 1 chr5A.!!$R1 1347
5 TraesCS7A01G256600 chr5B 466332656 466334002 1346 True 1297 1297 84.307 1043 2389 1 chr5B.!!$R1 1346
6 TraesCS7A01G256600 chr5D 387727911 387729260 1349 True 1277 1277 84.015 1043 2389 1 chr5D.!!$R3 1346
7 TraesCS7A01G256600 chr6B 660563101 660564111 1010 True 665 665 78.773 1363 2380 1 chr6B.!!$R1 1017
8 TraesCS7A01G256600 chr3D 275694089 275694652 563 False 307 307 77.568 2754 3307 1 chr3D.!!$F2 553
9 TraesCS7A01G256600 chr4B 217811791 217812353 562 True 305 305 77.568 2754 3307 1 chr4B.!!$R1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.034198 TGCATTGGAACTTCGTCGGA 59.966 50.0 0.0 0.0 0.00 4.55 F
408 409 0.040351 TAGGAGGCTGTGAGCTGTCT 59.960 55.0 0.0 0.0 41.99 3.41 F
414 415 0.108898 GCTGTGAGCTGTCTGATCGT 60.109 55.0 0.0 0.0 38.45 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 1173 1.513622 GAAGAGGAGGTGCGAGGAC 59.486 63.158 0.00 0.0 0.00 3.85 R
2311 2383 2.530916 GGTGGTGGGGTGGTACCT 60.531 66.667 14.36 0.0 38.64 3.08 R
2519 2591 2.802247 CGAGAACAGAATGCACACTTGA 59.198 45.455 0.00 0.0 42.53 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.166011 GCCAACGACCGCTGCATC 62.166 66.667 0.00 0.00 0.00 3.91
35 36 2.741985 CCAACGACCGCTGCATCA 60.742 61.111 0.00 0.00 0.00 3.07
36 37 2.476051 CAACGACCGCTGCATCAC 59.524 61.111 0.00 0.00 0.00 3.06
37 38 2.030412 AACGACCGCTGCATCACA 59.970 55.556 0.00 0.00 0.00 3.58
45 46 3.499050 CTGCATCACAGCTCTGGC 58.501 61.111 1.66 0.00 40.19 4.85
46 47 2.435410 TGCATCACAGCTCTGGCG 60.435 61.111 1.66 0.00 44.37 5.69
47 48 3.200593 GCATCACAGCTCTGGCGG 61.201 66.667 1.66 0.00 44.37 6.13
48 49 3.200593 CATCACAGCTCTGGCGGC 61.201 66.667 0.00 0.00 44.37 6.53
49 50 3.397439 ATCACAGCTCTGGCGGCT 61.397 61.111 11.43 0.00 44.37 5.52
50 51 2.964310 ATCACAGCTCTGGCGGCTT 61.964 57.895 11.43 0.00 44.37 4.35
51 52 3.429141 CACAGCTCTGGCGGCTTG 61.429 66.667 11.43 3.13 44.37 4.01
52 53 3.630013 ACAGCTCTGGCGGCTTGA 61.630 61.111 11.43 7.80 44.37 3.02
53 54 3.123620 CAGCTCTGGCGGCTTGAC 61.124 66.667 11.43 0.00 44.37 3.18
54 55 4.749310 AGCTCTGGCGGCTTGACG 62.749 66.667 11.43 0.00 44.37 4.35
55 56 4.742201 GCTCTGGCGGCTTGACGA 62.742 66.667 11.43 0.00 35.47 4.20
56 57 2.811317 CTCTGGCGGCTTGACGAC 60.811 66.667 11.43 0.00 43.68 4.34
57 58 4.373116 TCTGGCGGCTTGACGACC 62.373 66.667 11.43 0.74 42.43 4.79
64 65 4.077188 GCTTGACGACCGCTGCAC 62.077 66.667 0.00 0.00 0.00 4.57
65 66 3.414700 CTTGACGACCGCTGCACC 61.415 66.667 0.00 0.00 0.00 5.01
66 67 4.228567 TTGACGACCGCTGCACCA 62.229 61.111 0.00 0.00 0.00 4.17
67 68 4.961511 TGACGACCGCTGCACCAC 62.962 66.667 0.00 0.00 0.00 4.16
68 69 4.961511 GACGACCGCTGCACCACA 62.962 66.667 0.00 0.00 0.00 4.17
76 77 3.054503 CTGCACCACAGCTCCAGC 61.055 66.667 0.00 0.00 40.19 4.85
105 106 3.426568 GCTGCTGCGGTGGAACTC 61.427 66.667 10.62 0.00 36.74 3.01
106 107 2.743928 CTGCTGCGGTGGAACTCC 60.744 66.667 0.00 0.00 38.86 3.85
114 115 2.654877 GTGGAACTCCGCCGAGAA 59.345 61.111 9.16 0.00 40.56 2.87
115 116 1.446272 GTGGAACTCCGCCGAGAAG 60.446 63.158 9.16 0.00 40.56 2.85
116 117 1.906824 TGGAACTCCGCCGAGAAGT 60.907 57.895 9.16 0.00 38.52 3.01
117 118 1.153804 GGAACTCCGCCGAGAAGTC 60.154 63.158 9.16 3.46 38.52 3.01
118 119 1.596895 GGAACTCCGCCGAGAAGTCT 61.597 60.000 9.16 0.00 38.52 3.24
119 120 1.093159 GAACTCCGCCGAGAAGTCTA 58.907 55.000 9.16 0.00 38.52 2.59
120 121 1.064357 GAACTCCGCCGAGAAGTCTAG 59.936 57.143 9.16 0.00 38.52 2.43
121 122 1.357334 CTCCGCCGAGAAGTCTAGC 59.643 63.158 0.00 0.00 38.52 3.42
122 123 2.024871 CCGCCGAGAAGTCTAGCG 59.975 66.667 14.97 14.97 43.94 4.26
123 124 2.652496 CGCCGAGAAGTCTAGCGC 60.652 66.667 0.00 0.00 40.35 5.92
124 125 2.802106 GCCGAGAAGTCTAGCGCT 59.198 61.111 17.26 17.26 0.00 5.92
125 126 1.773054 CGCCGAGAAGTCTAGCGCTA 61.773 60.000 17.75 17.75 40.35 4.26
126 127 0.317186 GCCGAGAAGTCTAGCGCTAC 60.317 60.000 14.45 7.76 0.00 3.58
127 128 1.015109 CCGAGAAGTCTAGCGCTACA 58.985 55.000 14.45 0.00 0.00 2.74
128 129 1.400846 CCGAGAAGTCTAGCGCTACAA 59.599 52.381 14.45 1.33 0.00 2.41
129 130 2.033550 CCGAGAAGTCTAGCGCTACAAT 59.966 50.000 14.45 0.00 0.00 2.71
130 131 3.039405 CGAGAAGTCTAGCGCTACAATG 58.961 50.000 14.45 3.81 0.00 2.82
131 132 3.376540 GAGAAGTCTAGCGCTACAATGG 58.623 50.000 14.45 3.38 0.00 3.16
132 133 3.024547 AGAAGTCTAGCGCTACAATGGA 58.975 45.455 14.45 6.10 0.00 3.41
133 134 3.067461 AGAAGTCTAGCGCTACAATGGAG 59.933 47.826 14.45 3.56 0.00 3.86
134 135 1.067821 AGTCTAGCGCTACAATGGAGC 59.932 52.381 14.45 7.55 36.54 4.70
135 136 1.067821 GTCTAGCGCTACAATGGAGCT 59.932 52.381 16.28 4.48 42.08 4.09
136 137 1.757118 TCTAGCGCTACAATGGAGCTT 59.243 47.619 16.28 6.25 40.12 3.74
137 138 2.131183 CTAGCGCTACAATGGAGCTTC 58.869 52.381 16.28 7.16 40.12 3.86
138 139 0.462759 AGCGCTACAATGGAGCTTCC 60.463 55.000 16.28 3.82 36.50 3.46
139 140 1.440145 GCGCTACAATGGAGCTTCCC 61.440 60.000 16.28 0.00 37.81 3.97
140 141 0.815615 CGCTACAATGGAGCTTCCCC 60.816 60.000 16.28 0.00 37.81 4.81
141 142 0.815615 GCTACAATGGAGCTTCCCCG 60.816 60.000 10.80 0.00 35.03 5.73
142 143 0.541863 CTACAATGGAGCTTCCCCGT 59.458 55.000 0.00 0.00 35.03 5.28
143 144 0.251916 TACAATGGAGCTTCCCCGTG 59.748 55.000 0.00 0.00 35.03 4.94
144 145 1.750399 CAATGGAGCTTCCCCGTGG 60.750 63.158 0.00 0.00 35.03 4.94
145 146 2.983879 AATGGAGCTTCCCCGTGGG 61.984 63.158 0.00 0.00 46.11 4.61
168 169 4.827087 CGGTGCTGCGATGGAGCT 62.827 66.667 11.54 0.00 37.35 4.09
169 170 2.437359 GGTGCTGCGATGGAGCTT 60.437 61.111 11.54 0.00 37.35 3.74
170 171 2.467826 GGTGCTGCGATGGAGCTTC 61.468 63.158 11.54 5.01 37.35 3.86
171 172 2.510012 TGCTGCGATGGAGCTTCG 60.510 61.111 11.54 1.88 37.35 3.79
193 194 3.049674 CGCCGTCCAGTGTTGCAT 61.050 61.111 0.00 0.00 0.00 3.96
194 195 2.616330 CGCCGTCCAGTGTTGCATT 61.616 57.895 0.00 0.00 0.00 3.56
195 196 1.081242 GCCGTCCAGTGTTGCATTG 60.081 57.895 0.00 0.00 0.00 2.82
196 197 1.580942 CCGTCCAGTGTTGCATTGG 59.419 57.895 4.55 4.55 41.68 3.16
197 198 0.888736 CCGTCCAGTGTTGCATTGGA 60.889 55.000 8.92 8.92 45.66 3.53
200 201 2.363306 TCCAGTGTTGCATTGGAACT 57.637 45.000 19.80 0.00 45.05 3.01
201 202 2.665165 TCCAGTGTTGCATTGGAACTT 58.335 42.857 19.80 7.51 45.05 2.66
202 203 2.622942 TCCAGTGTTGCATTGGAACTTC 59.377 45.455 19.80 13.33 45.05 3.01
203 204 2.605338 CCAGTGTTGCATTGGAACTTCG 60.605 50.000 19.80 9.13 42.72 3.79
204 205 2.033299 CAGTGTTGCATTGGAACTTCGT 59.967 45.455 19.80 1.90 0.00 3.85
205 206 2.290641 AGTGTTGCATTGGAACTTCGTC 59.709 45.455 19.80 7.35 0.00 4.20
206 207 1.262950 TGTTGCATTGGAACTTCGTCG 59.737 47.619 19.80 0.00 0.00 5.12
207 208 0.871722 TTGCATTGGAACTTCGTCGG 59.128 50.000 0.00 0.00 0.00 4.79
208 209 0.034198 TGCATTGGAACTTCGTCGGA 59.966 50.000 0.00 0.00 0.00 4.55
209 210 0.721718 GCATTGGAACTTCGTCGGAG 59.278 55.000 0.00 0.00 0.00 4.63
210 211 1.359848 CATTGGAACTTCGTCGGAGG 58.640 55.000 5.33 0.00 0.00 4.30
211 212 0.249398 ATTGGAACTTCGTCGGAGGG 59.751 55.000 5.33 0.00 0.00 4.30
212 213 2.125633 GGAACTTCGTCGGAGGGC 60.126 66.667 5.33 0.00 0.00 5.19
213 214 2.125633 GAACTTCGTCGGAGGGCC 60.126 66.667 5.33 0.00 0.00 5.80
229 230 4.781959 CCGCCGGTGCTGCAATTG 62.782 66.667 10.27 0.00 34.43 2.32
230 231 3.736100 CGCCGGTGCTGCAATTGA 61.736 61.111 10.34 0.00 34.43 2.57
231 232 2.180017 GCCGGTGCTGCAATTGAG 59.820 61.111 10.34 5.14 33.53 3.02
232 233 2.879907 CCGGTGCTGCAATTGAGG 59.120 61.111 10.34 1.53 0.00 3.86
233 234 1.973281 CCGGTGCTGCAATTGAGGT 60.973 57.895 10.34 0.00 0.00 3.85
234 235 1.503542 CGGTGCTGCAATTGAGGTC 59.496 57.895 10.34 0.00 0.00 3.85
235 236 1.885871 GGTGCTGCAATTGAGGTCC 59.114 57.895 10.34 0.00 0.00 4.46
236 237 1.503542 GTGCTGCAATTGAGGTCCG 59.496 57.895 10.34 0.00 0.00 4.79
237 238 2.334946 TGCTGCAATTGAGGTCCGC 61.335 57.895 10.34 0.00 0.00 5.54
238 239 3.056313 GCTGCAATTGAGGTCCGCC 62.056 63.158 10.34 0.00 0.00 6.13
239 240 2.745884 TGCAATTGAGGTCCGCCG 60.746 61.111 10.34 0.00 40.50 6.46
240 241 2.435938 GCAATTGAGGTCCGCCGA 60.436 61.111 10.34 0.00 40.50 5.54
241 242 2.464459 GCAATTGAGGTCCGCCGAG 61.464 63.158 10.34 0.00 40.50 4.63
242 243 1.815421 CAATTGAGGTCCGCCGAGG 60.815 63.158 0.00 0.00 40.50 4.63
243 244 2.291043 AATTGAGGTCCGCCGAGGT 61.291 57.895 0.00 0.00 41.99 3.85
244 245 2.240162 AATTGAGGTCCGCCGAGGTC 62.240 60.000 0.00 0.00 41.99 3.85
251 252 4.143333 CCGCCGAGGTCGTCCAAT 62.143 66.667 0.51 0.00 37.74 3.16
252 253 2.885644 CGCCGAGGTCGTCCAATG 60.886 66.667 0.51 0.00 37.74 2.82
253 254 3.195698 GCCGAGGTCGTCCAATGC 61.196 66.667 0.51 0.00 37.74 3.56
254 255 2.579201 CCGAGGTCGTCCAATGCT 59.421 61.111 0.51 0.00 37.74 3.79
255 256 1.811266 CCGAGGTCGTCCAATGCTG 60.811 63.158 0.51 0.00 37.74 4.41
256 257 2.456119 CGAGGTCGTCCAATGCTGC 61.456 63.158 0.51 0.00 35.89 5.25
257 258 1.375908 GAGGTCGTCCAATGCTGCA 60.376 57.895 4.13 4.13 35.89 4.41
258 259 1.364626 GAGGTCGTCCAATGCTGCAG 61.365 60.000 10.11 10.11 35.89 4.41
259 260 2.482374 GTCGTCCAATGCTGCAGC 59.518 61.111 31.89 31.89 42.50 5.25
260 261 3.120385 TCGTCCAATGCTGCAGCG 61.120 61.111 32.11 18.72 45.83 5.18
261 262 4.170062 CGTCCAATGCTGCAGCGG 62.170 66.667 32.11 26.36 45.83 5.52
262 263 2.747460 GTCCAATGCTGCAGCGGA 60.747 61.111 32.11 28.10 45.83 5.54
263 264 2.437180 TCCAATGCTGCAGCGGAG 60.437 61.111 32.11 22.76 45.83 4.63
281 282 4.444838 CATCGCCGGGGTCGTTGA 62.445 66.667 19.13 0.00 33.95 3.18
282 283 3.697747 ATCGCCGGGGTCGTTGAA 61.698 61.111 19.13 0.00 33.95 2.69
283 284 3.659089 ATCGCCGGGGTCGTTGAAG 62.659 63.158 19.13 0.00 33.95 3.02
285 286 4.699522 GCCGGGGTCGTTGAAGCT 62.700 66.667 2.18 0.00 33.95 3.74
286 287 2.742372 CCGGGGTCGTTGAAGCTG 60.742 66.667 0.00 0.00 33.95 4.24
287 288 3.423154 CGGGGTCGTTGAAGCTGC 61.423 66.667 0.00 0.00 0.00 5.25
288 289 3.423154 GGGGTCGTTGAAGCTGCG 61.423 66.667 0.00 0.00 0.00 5.18
289 290 4.090057 GGGTCGTTGAAGCTGCGC 62.090 66.667 0.00 0.00 0.00 6.09
290 291 4.090057 GGTCGTTGAAGCTGCGCC 62.090 66.667 4.18 0.00 0.00 6.53
291 292 4.430423 GTCGTTGAAGCTGCGCCG 62.430 66.667 4.18 0.00 0.00 6.46
294 295 3.793144 GTTGAAGCTGCGCCGGAG 61.793 66.667 5.05 1.55 0.00 4.63
304 305 3.126879 CGCCGGAGCTGCAATGAA 61.127 61.111 5.05 0.00 36.60 2.57
305 306 2.796651 GCCGGAGCTGCAATGAAG 59.203 61.111 5.05 0.00 35.50 3.02
306 307 2.768492 GCCGGAGCTGCAATGAAGG 61.768 63.158 5.05 0.00 35.50 3.46
307 308 2.117156 CCGGAGCTGCAATGAAGGG 61.117 63.158 5.91 0.00 0.00 3.95
308 309 1.377725 CGGAGCTGCAATGAAGGGT 60.378 57.895 5.91 0.00 0.00 4.34
309 310 1.372087 CGGAGCTGCAATGAAGGGTC 61.372 60.000 5.91 0.00 0.00 4.46
310 311 1.372087 GGAGCTGCAATGAAGGGTCG 61.372 60.000 0.00 0.00 0.00 4.79
311 312 0.674895 GAGCTGCAATGAAGGGTCGT 60.675 55.000 1.02 0.00 0.00 4.34
312 313 0.250901 AGCTGCAATGAAGGGTCGTT 60.251 50.000 1.02 0.00 32.98 3.85
314 315 0.523072 CTGCAATGAAGGGTCGTTGG 59.477 55.000 9.94 0.00 46.67 3.77
315 316 0.109532 TGCAATGAAGGGTCGTTGGA 59.890 50.000 9.94 5.06 46.67 3.53
316 317 0.804989 GCAATGAAGGGTCGTTGGAG 59.195 55.000 9.94 0.00 46.67 3.86
317 318 1.882352 GCAATGAAGGGTCGTTGGAGT 60.882 52.381 9.94 0.00 46.67 3.85
318 319 2.504367 CAATGAAGGGTCGTTGGAGTT 58.496 47.619 1.48 0.00 44.06 3.01
319 320 2.185004 ATGAAGGGTCGTTGGAGTTG 57.815 50.000 0.00 0.00 0.00 3.16
320 321 0.534203 TGAAGGGTCGTTGGAGTTGC 60.534 55.000 0.00 0.00 0.00 4.17
321 322 0.534203 GAAGGGTCGTTGGAGTTGCA 60.534 55.000 0.00 0.00 0.00 4.08
322 323 0.106918 AAGGGTCGTTGGAGTTGCAA 60.107 50.000 0.00 0.00 0.00 4.08
323 324 0.110486 AGGGTCGTTGGAGTTGCAAT 59.890 50.000 0.59 0.00 0.00 3.56
324 325 0.240945 GGGTCGTTGGAGTTGCAATG 59.759 55.000 0.59 0.00 0.00 2.82
325 326 0.240945 GGTCGTTGGAGTTGCAATGG 59.759 55.000 0.59 0.00 0.00 3.16
326 327 1.234821 GTCGTTGGAGTTGCAATGGA 58.765 50.000 0.59 0.00 0.00 3.41
327 328 1.197721 GTCGTTGGAGTTGCAATGGAG 59.802 52.381 0.59 0.00 0.00 3.86
328 329 0.109597 CGTTGGAGTTGCAATGGAGC 60.110 55.000 0.59 0.00 0.00 4.70
329 330 0.109597 GTTGGAGTTGCAATGGAGCG 60.110 55.000 0.59 0.00 37.31 5.03
330 331 1.865788 TTGGAGTTGCAATGGAGCGC 61.866 55.000 0.59 0.00 37.31 5.92
331 332 2.486966 GAGTTGCAATGGAGCGCC 59.513 61.111 2.29 0.00 37.31 6.53
344 345 3.647978 GCGCCATAGAGCTGCTGC 61.648 66.667 7.01 7.62 35.67 5.25
345 346 2.971413 CGCCATAGAGCTGCTGCC 60.971 66.667 7.01 4.03 40.80 4.85
346 347 2.971413 GCCATAGAGCTGCTGCCG 60.971 66.667 7.01 0.00 40.80 5.69
347 348 2.280660 CCATAGAGCTGCTGCCGG 60.281 66.667 7.01 0.00 40.80 6.13
348 349 2.503061 CATAGAGCTGCTGCCGGT 59.497 61.111 7.01 0.00 40.80 5.28
349 350 1.886313 CATAGAGCTGCTGCCGGTG 60.886 63.158 7.01 2.99 40.80 4.94
350 351 3.746949 ATAGAGCTGCTGCCGGTGC 62.747 63.158 7.01 13.41 40.80 5.01
372 373 2.187685 TGGTGCGCCATAGAGCTG 59.812 61.111 16.89 0.00 40.46 4.24
373 374 3.275338 GGTGCGCCATAGAGCTGC 61.275 66.667 12.58 0.00 39.89 5.25
374 375 2.202987 GTGCGCCATAGAGCTGCT 60.203 61.111 4.18 0.00 39.89 4.24
375 376 2.202974 TGCGCCATAGAGCTGCTG 60.203 61.111 7.01 0.00 39.89 4.41
376 377 2.202987 GCGCCATAGAGCTGCTGT 60.203 61.111 7.01 5.47 35.67 4.40
377 378 2.532256 GCGCCATAGAGCTGCTGTG 61.532 63.158 7.01 2.98 35.67 3.66
378 379 1.153489 CGCCATAGAGCTGCTGTGT 60.153 57.895 7.01 0.00 34.23 3.72
379 380 1.426816 CGCCATAGAGCTGCTGTGTG 61.427 60.000 15.19 15.19 34.23 3.82
380 381 1.094073 GCCATAGAGCTGCTGTGTGG 61.094 60.000 30.08 30.08 34.23 4.17
381 382 0.251354 CCATAGAGCTGCTGTGTGGT 59.749 55.000 27.37 2.87 34.23 4.16
382 383 1.339438 CCATAGAGCTGCTGTGTGGTT 60.339 52.381 27.37 0.00 34.23 3.67
383 384 2.005451 CATAGAGCTGCTGTGTGGTTC 58.995 52.381 14.48 0.00 31.70 3.62
384 385 1.342074 TAGAGCTGCTGTGTGGTTCT 58.658 50.000 7.01 0.00 0.00 3.01
385 386 0.250209 AGAGCTGCTGTGTGGTTCTG 60.250 55.000 7.01 0.00 0.00 3.02
386 387 1.849976 GAGCTGCTGTGTGGTTCTGC 61.850 60.000 7.01 0.00 0.00 4.26
387 388 2.912624 GCTGCTGTGTGGTTCTGCC 61.913 63.158 0.00 0.00 37.90 4.85
388 389 1.526686 CTGCTGTGTGGTTCTGCCA 60.527 57.895 0.00 0.00 46.95 4.92
404 405 2.525784 CCATAGGAGGCTGTGAGCT 58.474 57.895 0.00 0.00 41.99 4.09
405 406 0.106335 CCATAGGAGGCTGTGAGCTG 59.894 60.000 0.00 0.00 41.99 4.24
406 407 0.829333 CATAGGAGGCTGTGAGCTGT 59.171 55.000 0.00 0.00 41.99 4.40
407 408 1.118838 ATAGGAGGCTGTGAGCTGTC 58.881 55.000 0.00 0.00 41.99 3.51
408 409 0.040351 TAGGAGGCTGTGAGCTGTCT 59.960 55.000 0.00 0.00 41.99 3.41
409 410 1.079266 GGAGGCTGTGAGCTGTCTG 60.079 63.158 0.00 0.00 41.99 3.51
410 411 1.539560 GGAGGCTGTGAGCTGTCTGA 61.540 60.000 0.00 0.00 41.99 3.27
411 412 0.536260 GAGGCTGTGAGCTGTCTGAT 59.464 55.000 0.00 0.00 41.99 2.90
412 413 0.536260 AGGCTGTGAGCTGTCTGATC 59.464 55.000 0.00 0.00 41.99 2.92
413 414 0.805322 GGCTGTGAGCTGTCTGATCG 60.805 60.000 0.00 0.00 41.99 3.69
414 415 0.108898 GCTGTGAGCTGTCTGATCGT 60.109 55.000 0.00 0.00 38.45 3.73
415 416 1.133216 GCTGTGAGCTGTCTGATCGTA 59.867 52.381 0.00 0.00 38.45 3.43
416 417 2.791567 CTGTGAGCTGTCTGATCGTAC 58.208 52.381 0.00 0.00 32.98 3.67
417 418 1.130561 TGTGAGCTGTCTGATCGTACG 59.869 52.381 9.53 9.53 32.98 3.67
418 419 0.733150 TGAGCTGTCTGATCGTACGG 59.267 55.000 16.52 0.00 32.98 4.02
419 420 0.592754 GAGCTGTCTGATCGTACGGC 60.593 60.000 16.52 18.63 46.27 5.68
420 421 1.433879 GCTGTCTGATCGTACGGCT 59.566 57.895 16.52 2.89 43.28 5.52
421 422 0.867753 GCTGTCTGATCGTACGGCTG 60.868 60.000 16.52 11.77 43.28 4.85
422 423 0.867753 CTGTCTGATCGTACGGCTGC 60.868 60.000 16.52 3.17 0.00 5.25
423 424 1.939785 GTCTGATCGTACGGCTGCG 60.940 63.158 16.52 0.95 0.00 5.18
424 425 2.655364 CTGATCGTACGGCTGCGG 60.655 66.667 16.52 5.60 0.00 5.69
425 426 3.120979 CTGATCGTACGGCTGCGGA 62.121 63.158 16.52 0.00 0.00 5.54
426 427 2.353607 GATCGTACGGCTGCGGAG 60.354 66.667 16.52 0.00 0.00 4.63
427 428 3.122250 GATCGTACGGCTGCGGAGT 62.122 63.158 16.52 6.73 0.00 3.85
428 429 1.779025 GATCGTACGGCTGCGGAGTA 61.779 60.000 16.52 5.75 0.00 2.59
429 430 1.170919 ATCGTACGGCTGCGGAGTAT 61.171 55.000 16.52 0.00 0.00 2.12
430 431 1.370172 CGTACGGCTGCGGAGTATC 60.370 63.158 14.45 0.00 0.00 2.24
431 432 1.783031 CGTACGGCTGCGGAGTATCT 61.783 60.000 14.45 0.00 33.73 1.98
432 433 0.317938 GTACGGCTGCGGAGTATCTG 60.318 60.000 14.45 0.00 46.81 2.90
441 442 3.940723 GGAGTATCTGAACGGACGG 57.059 57.895 0.00 0.00 33.73 4.79
442 443 0.248949 GGAGTATCTGAACGGACGGC 60.249 60.000 0.00 0.00 33.73 5.68
443 444 0.739561 GAGTATCTGAACGGACGGCT 59.260 55.000 0.00 0.00 0.00 5.52
444 445 0.739561 AGTATCTGAACGGACGGCTC 59.260 55.000 0.00 0.00 0.00 4.70
445 446 0.739561 GTATCTGAACGGACGGCTCT 59.260 55.000 0.00 0.00 0.00 4.09
446 447 0.738975 TATCTGAACGGACGGCTCTG 59.261 55.000 0.00 0.00 0.00 3.35
447 448 0.965866 ATCTGAACGGACGGCTCTGA 60.966 55.000 0.00 2.88 0.00 3.27
448 449 1.153939 CTGAACGGACGGCTCTGAG 60.154 63.158 0.00 0.00 0.00 3.35
449 450 2.182030 GAACGGACGGCTCTGAGG 59.818 66.667 6.83 0.00 0.00 3.86
450 451 3.358076 GAACGGACGGCTCTGAGGG 62.358 68.421 6.83 0.00 0.00 4.30
451 452 3.881019 AACGGACGGCTCTGAGGGA 62.881 63.158 6.83 0.00 0.00 4.20
452 453 3.522731 CGGACGGCTCTGAGGGAG 61.523 72.222 6.83 0.00 44.49 4.30
453 454 3.151022 GGACGGCTCTGAGGGAGG 61.151 72.222 6.83 0.00 42.08 4.30
460 461 2.789409 GCTCTGAGGGAGGCTTAAAA 57.211 50.000 6.83 0.00 42.08 1.52
461 462 2.360844 GCTCTGAGGGAGGCTTAAAAC 58.639 52.381 6.83 0.00 42.08 2.43
462 463 2.026729 GCTCTGAGGGAGGCTTAAAACT 60.027 50.000 6.83 0.00 42.08 2.66
463 464 3.604582 CTCTGAGGGAGGCTTAAAACTG 58.395 50.000 0.00 0.00 38.35 3.16
464 465 2.305927 TCTGAGGGAGGCTTAAAACTGG 59.694 50.000 0.00 0.00 0.00 4.00
465 466 2.305927 CTGAGGGAGGCTTAAAACTGGA 59.694 50.000 0.00 0.00 0.00 3.86
466 467 2.919602 TGAGGGAGGCTTAAAACTGGAT 59.080 45.455 0.00 0.00 0.00 3.41
467 468 3.054361 TGAGGGAGGCTTAAAACTGGATC 60.054 47.826 0.00 0.00 0.00 3.36
468 469 2.919602 AGGGAGGCTTAAAACTGGATCA 59.080 45.455 0.00 0.00 0.00 2.92
469 470 3.333680 AGGGAGGCTTAAAACTGGATCAA 59.666 43.478 0.00 0.00 0.00 2.57
470 471 4.086457 GGGAGGCTTAAAACTGGATCAAA 58.914 43.478 0.00 0.00 0.00 2.69
471 472 4.711846 GGGAGGCTTAAAACTGGATCAAAT 59.288 41.667 0.00 0.00 0.00 2.32
472 473 5.163509 GGGAGGCTTAAAACTGGATCAAATC 60.164 44.000 0.00 0.00 0.00 2.17
473 474 5.418840 GGAGGCTTAAAACTGGATCAAATCA 59.581 40.000 0.00 0.00 0.00 2.57
474 475 6.097412 GGAGGCTTAAAACTGGATCAAATCAT 59.903 38.462 0.00 0.00 0.00 2.45
475 476 7.105241 AGGCTTAAAACTGGATCAAATCATC 57.895 36.000 0.00 0.00 0.00 2.92
476 477 6.097412 AGGCTTAAAACTGGATCAAATCATCC 59.903 38.462 0.00 0.00 42.68 3.51
477 478 5.973565 GCTTAAAACTGGATCAAATCATCCG 59.026 40.000 0.00 0.00 45.03 4.18
478 479 6.183360 GCTTAAAACTGGATCAAATCATCCGA 60.183 38.462 0.00 0.00 45.03 4.55
479 480 5.567138 AAAACTGGATCAAATCATCCGAC 57.433 39.130 0.00 0.00 45.03 4.79
480 481 4.494091 AACTGGATCAAATCATCCGACT 57.506 40.909 0.00 0.00 45.03 4.18
481 482 3.801698 ACTGGATCAAATCATCCGACTG 58.198 45.455 0.00 0.00 45.03 3.51
482 483 3.136763 CTGGATCAAATCATCCGACTGG 58.863 50.000 0.00 0.00 45.03 4.00
483 484 2.505407 TGGATCAAATCATCCGACTGGT 59.495 45.455 0.00 0.00 45.03 4.00
484 485 3.134458 GGATCAAATCATCCGACTGGTC 58.866 50.000 0.00 0.00 33.13 4.02
485 486 2.691409 TCAAATCATCCGACTGGTCC 57.309 50.000 0.00 0.00 36.30 4.46
486 487 1.134818 TCAAATCATCCGACTGGTCCG 60.135 52.381 0.00 0.00 36.30 4.79
487 488 0.902531 AAATCATCCGACTGGTCCGT 59.097 50.000 0.00 0.00 36.30 4.69
488 489 1.771565 AATCATCCGACTGGTCCGTA 58.228 50.000 0.00 0.00 36.30 4.02
489 490 1.319541 ATCATCCGACTGGTCCGTAG 58.680 55.000 0.00 0.00 36.30 3.51
490 491 1.065928 CATCCGACTGGTCCGTAGC 59.934 63.158 0.00 0.00 36.30 3.58
491 492 1.379443 ATCCGACTGGTCCGTAGCA 60.379 57.895 0.00 0.00 36.30 3.49
492 493 0.968901 ATCCGACTGGTCCGTAGCAA 60.969 55.000 0.00 0.00 36.30 3.91
493 494 0.968901 TCCGACTGGTCCGTAGCAAT 60.969 55.000 0.00 0.00 36.30 3.56
494 495 0.527817 CCGACTGGTCCGTAGCAATC 60.528 60.000 0.00 0.00 31.48 2.67
495 496 0.866061 CGACTGGTCCGTAGCAATCG 60.866 60.000 0.00 0.00 44.80 3.34
496 497 1.146358 GACTGGTCCGTAGCAATCGC 61.146 60.000 0.00 0.00 38.99 4.58
497 498 1.883084 CTGGTCCGTAGCAATCGCC 60.883 63.158 0.00 0.00 39.83 5.54
498 499 2.185867 GGTCCGTAGCAATCGCCA 59.814 61.111 0.00 0.00 39.83 5.69
499 500 1.227556 GGTCCGTAGCAATCGCCAT 60.228 57.895 0.00 0.00 39.83 4.40
564 565 1.903404 GGGTGTGTTGGCCCAGAAG 60.903 63.158 0.00 0.00 44.23 2.85
568 569 0.482446 TGTGTTGGCCCAGAAGGAAT 59.518 50.000 0.00 0.00 38.24 3.01
569 570 0.890683 GTGTTGGCCCAGAAGGAATG 59.109 55.000 0.00 0.00 38.24 2.67
571 572 0.251787 GTTGGCCCAGAAGGAATGGT 60.252 55.000 0.00 0.00 38.24 3.55
580 581 3.607084 AAGGAATGGTGCCCCCTGC 62.607 63.158 0.00 0.00 41.77 4.85
600 601 1.446966 GCGTCCAAGGCAGAGAGAC 60.447 63.158 0.00 0.00 0.00 3.36
601 602 1.967535 CGTCCAAGGCAGAGAGACA 59.032 57.895 0.00 0.00 0.00 3.41
602 603 0.389166 CGTCCAAGGCAGAGAGACAC 60.389 60.000 0.00 0.00 0.00 3.67
652 653 8.706035 ACTACTATTTTTGTAGTTGTAGCAACG 58.294 33.333 6.39 0.00 45.60 4.10
695 720 3.532155 CGCCTCCCCTCTTCCTCG 61.532 72.222 0.00 0.00 0.00 4.63
701 726 2.646175 CCCCTCTTCCTCGCGACAA 61.646 63.158 3.71 0.00 0.00 3.18
769 795 2.383442 TCCTCCCGAGCTAAGCTAAT 57.617 50.000 0.00 0.00 39.88 1.73
771 797 2.158445 TCCTCCCGAGCTAAGCTAATCT 60.158 50.000 0.00 0.00 39.88 2.40
889 919 2.122729 CTCTCACTCCCACCCCCA 59.877 66.667 0.00 0.00 0.00 4.96
890 920 2.203938 TCTCACTCCCACCCCCAC 60.204 66.667 0.00 0.00 0.00 4.61
891 921 3.330720 CTCACTCCCACCCCCACC 61.331 72.222 0.00 0.00 0.00 4.61
892 922 4.995058 TCACTCCCACCCCCACCC 62.995 72.222 0.00 0.00 0.00 4.61
1137 1173 4.847516 TCCAAGATCGTCGCGGCG 62.848 66.667 29.79 29.79 0.00 6.46
1591 1660 3.348055 CTGCTCGAGCGGCTCTTCA 62.348 63.158 31.83 18.41 45.83 3.02
1785 1854 1.370064 GGTGTACGGGCTCAACACT 59.630 57.895 16.40 0.00 42.46 3.55
2079 2148 3.637273 GTGAAGGGGTGCCTCGGT 61.637 66.667 0.00 0.00 0.00 4.69
2235 2307 1.002900 CTCGGCAAGAAAGCGAACAAA 60.003 47.619 0.00 0.00 34.64 2.83
2447 2519 6.003950 CCAAGACTACCAAGAAGAAATCCAA 58.996 40.000 0.00 0.00 0.00 3.53
2519 2591 2.746375 GCCCGGATGTCCAGTCCAT 61.746 63.158 0.73 0.00 35.41 3.41
2540 2612 2.802247 TCAAGTGTGCATTCTGTTCTCG 59.198 45.455 0.00 0.00 0.00 4.04
2549 2621 1.874345 TTCTGTTCTCGTCGGAGGCC 61.874 60.000 0.00 0.00 40.85 5.19
2776 2849 1.002134 ACATGAGCCGTGGAAAGGG 60.002 57.895 0.00 0.00 35.32 3.95
2844 2918 2.459934 GGTTCAGGTTGTTTTTGCTCG 58.540 47.619 0.00 0.00 0.00 5.03
2888 2962 6.341316 GGTCACTATCTTGTTCTTGCTCATA 58.659 40.000 0.00 0.00 0.00 2.15
2971 3056 0.454600 CAAGATGCTGTGGTGGATGC 59.545 55.000 0.00 0.00 0.00 3.91
2999 3086 1.233285 CCGAGCAGCTGCAGTTTTCT 61.233 55.000 38.24 17.87 45.16 2.52
3045 3132 1.511318 TTGACGGTGGATTTGGTGCG 61.511 55.000 0.00 0.00 0.00 5.34
3193 3297 2.644992 CGAGGTTTGGTGGCAAGC 59.355 61.111 0.00 0.00 0.00 4.01
3197 3301 2.644992 GTTTGGTGGCAAGCGAGG 59.355 61.111 0.00 0.00 0.00 4.63
3201 3305 3.706373 GGTGGCAAGCGAGGGAGA 61.706 66.667 0.00 0.00 0.00 3.71
3233 3337 3.181434 TGTTTGAGCCTTGGACTTGGTAT 60.181 43.478 0.00 0.00 0.00 2.73
3258 3362 3.334583 TCTTTCCAGTAGCATCACACC 57.665 47.619 0.00 0.00 0.00 4.16
3266 3374 1.740025 GTAGCATCACACCAGCCTTTC 59.260 52.381 0.00 0.00 0.00 2.62
3293 3401 5.764686 ACATTGATGTTTCTTGCTGTCTACA 59.235 36.000 0.00 0.00 37.90 2.74
3318 3426 2.143122 GGCGTGATGACTGAAGTTGAA 58.857 47.619 0.00 0.00 0.00 2.69
3321 3429 3.987868 GCGTGATGACTGAAGTTGAACTA 59.012 43.478 0.00 0.00 0.00 2.24
3356 3486 0.107263 TGTGGAACTGTGAAGCTGCA 60.107 50.000 1.02 0.00 38.04 4.41
3358 3488 1.068748 GTGGAACTGTGAAGCTGCATG 60.069 52.381 0.00 0.00 0.00 4.06
3369 3499 4.394300 GTGAAGCTGCATGAGTATGAACTT 59.606 41.667 0.00 0.00 35.56 2.66
3396 3526 4.584638 TCCTACTAAACACAATGGCCAT 57.415 40.909 14.09 14.09 0.00 4.40
3397 3527 4.929479 TCCTACTAAACACAATGGCCATT 58.071 39.130 25.73 25.73 0.00 3.16
3406 3536 2.133281 CAATGGCCATTGGTCAGAGA 57.867 50.000 39.89 1.65 42.12 3.10
3407 3537 2.662866 CAATGGCCATTGGTCAGAGAT 58.337 47.619 39.89 11.73 42.12 2.75
3408 3538 2.359981 ATGGCCATTGGTCAGAGATG 57.640 50.000 14.09 0.00 42.12 2.90
3409 3539 0.994247 TGGCCATTGGTCAGAGATGT 59.006 50.000 5.72 0.00 29.54 3.06
3410 3540 1.355381 TGGCCATTGGTCAGAGATGTT 59.645 47.619 5.72 0.00 29.54 2.71
3411 3541 2.225091 TGGCCATTGGTCAGAGATGTTT 60.225 45.455 5.72 0.00 29.54 2.83
3412 3542 2.827921 GGCCATTGGTCAGAGATGTTTT 59.172 45.455 1.41 0.00 0.00 2.43
3413 3543 3.367703 GGCCATTGGTCAGAGATGTTTTG 60.368 47.826 1.41 0.00 0.00 2.44
3414 3544 3.841643 CCATTGGTCAGAGATGTTTTGC 58.158 45.455 0.00 0.00 0.00 3.68
3415 3545 3.256383 CCATTGGTCAGAGATGTTTTGCA 59.744 43.478 0.00 0.00 0.00 4.08
3416 3546 4.262121 CCATTGGTCAGAGATGTTTTGCAA 60.262 41.667 0.00 0.00 0.00 4.08
3417 3547 5.475719 CATTGGTCAGAGATGTTTTGCAAT 58.524 37.500 0.00 0.00 0.00 3.56
3418 3548 6.350361 CCATTGGTCAGAGATGTTTTGCAATA 60.350 38.462 0.00 0.00 0.00 1.90
3419 3549 5.627499 TGGTCAGAGATGTTTTGCAATAC 57.373 39.130 12.51 12.51 0.00 1.89
3420 3550 5.069318 TGGTCAGAGATGTTTTGCAATACA 58.931 37.500 22.29 22.29 0.00 2.29
3421 3551 5.534278 TGGTCAGAGATGTTTTGCAATACAA 59.466 36.000 23.53 9.91 36.13 2.41
3422 3552 6.209192 TGGTCAGAGATGTTTTGCAATACAAT 59.791 34.615 23.53 16.20 38.31 2.71
3423 3553 7.392953 TGGTCAGAGATGTTTTGCAATACAATA 59.607 33.333 23.53 4.19 38.31 1.90
3424 3554 8.243426 GGTCAGAGATGTTTTGCAATACAATAA 58.757 33.333 23.53 3.83 38.31 1.40
3425 3555 9.793252 GTCAGAGATGTTTTGCAATACAATAAT 57.207 29.630 23.53 9.72 38.31 1.28
3427 3557 8.950961 CAGAGATGTTTTGCAATACAATAATCG 58.049 33.333 23.53 9.60 38.31 3.34
3428 3558 8.677300 AGAGATGTTTTGCAATACAATAATCGT 58.323 29.630 23.53 8.05 38.31 3.73
3429 3559 9.289303 GAGATGTTTTGCAATACAATAATCGTT 57.711 29.630 23.53 7.38 38.31 3.85
3430 3560 9.075519 AGATGTTTTGCAATACAATAATCGTTG 57.924 29.630 23.53 0.00 38.31 4.10
3431 3561 8.755696 ATGTTTTGCAATACAATAATCGTTGT 57.244 26.923 23.53 3.68 44.09 3.32
3432 3562 9.847706 ATGTTTTGCAATACAATAATCGTTGTA 57.152 25.926 23.53 2.41 45.55 2.41
3448 3578 6.872628 TCGTTGTATTGATAGAGTATCGGT 57.127 37.500 0.00 0.00 42.67 4.69
3449 3579 6.665465 TCGTTGTATTGATAGAGTATCGGTG 58.335 40.000 0.00 0.00 42.67 4.94
3450 3580 5.342525 CGTTGTATTGATAGAGTATCGGTGC 59.657 44.000 0.00 0.00 42.67 5.01
3451 3581 6.213677 GTTGTATTGATAGAGTATCGGTGCA 58.786 40.000 0.00 0.00 42.67 4.57
3452 3582 5.769367 TGTATTGATAGAGTATCGGTGCAC 58.231 41.667 8.80 8.80 42.67 4.57
3453 3583 3.349488 TTGATAGAGTATCGGTGCACG 57.651 47.619 11.45 6.55 42.67 5.34
3454 3584 2.294979 TGATAGAGTATCGGTGCACGT 58.705 47.619 11.45 1.83 44.69 4.49
3455 3585 3.469739 TGATAGAGTATCGGTGCACGTA 58.530 45.455 11.45 0.85 44.69 3.57
3456 3586 4.070009 TGATAGAGTATCGGTGCACGTAT 58.930 43.478 11.45 9.19 44.69 3.06
3457 3587 5.240121 TGATAGAGTATCGGTGCACGTATA 58.760 41.667 11.45 8.15 44.69 1.47
3458 3588 5.878669 TGATAGAGTATCGGTGCACGTATAT 59.121 40.000 11.45 4.05 44.69 0.86
3459 3589 7.043565 TGATAGAGTATCGGTGCACGTATATA 58.956 38.462 11.45 3.07 44.69 0.86
3460 3590 7.713942 TGATAGAGTATCGGTGCACGTATATAT 59.286 37.037 11.45 6.16 44.69 0.86
3461 3591 9.201127 GATAGAGTATCGGTGCACGTATATATA 57.799 37.037 11.45 6.16 44.69 0.86
3462 3592 7.854557 AGAGTATCGGTGCACGTATATATAA 57.145 36.000 11.45 0.00 44.69 0.98
3463 3593 7.917597 AGAGTATCGGTGCACGTATATATAAG 58.082 38.462 11.45 4.36 44.69 1.73
3464 3594 7.551974 AGAGTATCGGTGCACGTATATATAAGT 59.448 37.037 11.45 5.59 44.69 2.24
3465 3595 8.722480 AGTATCGGTGCACGTATATATAAGTA 57.278 34.615 11.45 0.00 44.69 2.24
3466 3596 9.334947 AGTATCGGTGCACGTATATATAAGTAT 57.665 33.333 11.45 3.70 44.69 2.12
3467 3597 9.941664 GTATCGGTGCACGTATATATAAGTATT 57.058 33.333 11.45 0.00 44.69 1.89
3468 3598 8.851960 ATCGGTGCACGTATATATAAGTATTG 57.148 34.615 11.45 1.78 44.69 1.90
3469 3599 7.252708 TCGGTGCACGTATATATAAGTATTGG 58.747 38.462 11.45 1.41 44.69 3.16
3470 3600 7.121020 TCGGTGCACGTATATATAAGTATTGGA 59.879 37.037 11.45 0.00 44.69 3.53
3471 3601 7.919091 CGGTGCACGTATATATAAGTATTGGAT 59.081 37.037 11.45 0.00 37.93 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.166011 GATGCAGCGGTCGTTGGC 62.166 66.667 9.06 3.35 0.00 4.52
18 19 2.741985 TGATGCAGCGGTCGTTGG 60.742 61.111 9.06 0.00 0.00 3.77
19 20 2.231745 CTGTGATGCAGCGGTCGTTG 62.232 60.000 0.00 2.92 38.52 4.10
20 21 2.029288 CTGTGATGCAGCGGTCGTT 61.029 57.895 0.00 0.00 38.52 3.85
21 22 2.433145 CTGTGATGCAGCGGTCGT 60.433 61.111 0.00 0.00 38.52 4.34
29 30 2.435410 CGCCAGAGCTGTGATGCA 60.435 61.111 13.38 0.00 36.60 3.96
30 31 3.200593 CCGCCAGAGCTGTGATGC 61.201 66.667 13.38 7.24 36.60 3.91
31 32 3.200593 GCCGCCAGAGCTGTGATG 61.201 66.667 13.38 3.86 36.60 3.07
32 33 2.964310 AAGCCGCCAGAGCTGTGAT 61.964 57.895 13.38 0.00 40.49 3.06
33 34 3.630013 AAGCCGCCAGAGCTGTGA 61.630 61.111 13.38 0.00 40.49 3.58
34 35 3.429141 CAAGCCGCCAGAGCTGTG 61.429 66.667 3.32 3.32 40.49 3.66
35 36 3.630013 TCAAGCCGCCAGAGCTGT 61.630 61.111 0.00 0.00 40.49 4.40
36 37 3.123620 GTCAAGCCGCCAGAGCTG 61.124 66.667 0.00 0.00 40.49 4.24
37 38 4.749310 CGTCAAGCCGCCAGAGCT 62.749 66.667 0.00 0.00 44.19 4.09
38 39 4.742201 TCGTCAAGCCGCCAGAGC 62.742 66.667 0.00 0.00 0.00 4.09
39 40 2.811317 GTCGTCAAGCCGCCAGAG 60.811 66.667 0.00 0.00 0.00 3.35
40 41 4.373116 GGTCGTCAAGCCGCCAGA 62.373 66.667 0.00 0.00 0.00 3.86
47 48 4.077188 GTGCAGCGGTCGTCAAGC 62.077 66.667 0.00 0.00 0.00 4.01
48 49 3.414700 GGTGCAGCGGTCGTCAAG 61.415 66.667 0.00 0.00 0.00 3.02
49 50 4.228567 TGGTGCAGCGGTCGTCAA 62.229 61.111 11.91 0.00 0.00 3.18
50 51 4.961511 GTGGTGCAGCGGTCGTCA 62.962 66.667 11.91 0.00 0.00 4.35
51 52 4.961511 TGTGGTGCAGCGGTCGTC 62.962 66.667 11.91 0.00 0.00 4.20
52 53 4.969196 CTGTGGTGCAGCGGTCGT 62.969 66.667 11.91 0.00 38.52 4.34
60 61 4.994471 CGCTGGAGCTGTGGTGCA 62.994 66.667 0.00 0.00 39.32 4.57
88 89 3.426568 GAGTTCCACCGCAGCAGC 61.427 66.667 0.00 0.00 37.42 5.25
89 90 2.743928 GGAGTTCCACCGCAGCAG 60.744 66.667 0.00 0.00 35.64 4.24
90 91 4.680237 CGGAGTTCCACCGCAGCA 62.680 66.667 0.00 0.00 43.74 4.41
96 97 2.837371 CTTCTCGGCGGAGTTCCACC 62.837 65.000 19.51 0.00 41.26 4.61
97 98 1.446272 CTTCTCGGCGGAGTTCCAC 60.446 63.158 19.51 0.00 41.26 4.02
98 99 1.874345 GACTTCTCGGCGGAGTTCCA 61.874 60.000 19.51 0.00 41.26 3.53
99 100 1.153804 GACTTCTCGGCGGAGTTCC 60.154 63.158 19.51 5.78 41.26 3.62
100 101 1.064357 CTAGACTTCTCGGCGGAGTTC 59.936 57.143 19.51 14.22 41.26 3.01
101 102 1.096416 CTAGACTTCTCGGCGGAGTT 58.904 55.000 19.51 6.81 41.26 3.01
102 103 1.378124 GCTAGACTTCTCGGCGGAGT 61.378 60.000 19.51 9.18 41.26 3.85
103 104 1.357334 GCTAGACTTCTCGGCGGAG 59.643 63.158 14.80 14.80 41.89 4.63
104 105 2.470362 CGCTAGACTTCTCGGCGGA 61.470 63.158 7.21 0.00 41.27 5.54
105 106 2.024871 CGCTAGACTTCTCGGCGG 59.975 66.667 7.21 0.00 41.27 6.13
106 107 1.773054 TAGCGCTAGACTTCTCGGCG 61.773 60.000 14.45 16.97 44.74 6.46
107 108 0.317186 GTAGCGCTAGACTTCTCGGC 60.317 60.000 19.48 0.00 0.00 5.54
108 109 1.015109 TGTAGCGCTAGACTTCTCGG 58.985 55.000 19.48 0.00 0.00 4.63
109 110 2.826979 TTGTAGCGCTAGACTTCTCG 57.173 50.000 19.48 0.00 0.00 4.04
110 111 3.066900 TCCATTGTAGCGCTAGACTTCTC 59.933 47.826 19.48 4.57 0.00 2.87
111 112 3.024547 TCCATTGTAGCGCTAGACTTCT 58.975 45.455 19.48 0.00 0.00 2.85
112 113 3.376540 CTCCATTGTAGCGCTAGACTTC 58.623 50.000 19.48 6.18 0.00 3.01
113 114 2.482142 GCTCCATTGTAGCGCTAGACTT 60.482 50.000 19.48 3.71 0.00 3.01
114 115 1.067821 GCTCCATTGTAGCGCTAGACT 59.932 52.381 19.48 8.18 0.00 3.24
115 116 1.067821 AGCTCCATTGTAGCGCTAGAC 59.932 52.381 19.48 10.77 44.87 2.59
116 117 1.403814 AGCTCCATTGTAGCGCTAGA 58.596 50.000 19.48 14.99 44.87 2.43
117 118 2.131183 GAAGCTCCATTGTAGCGCTAG 58.869 52.381 19.48 7.10 44.87 3.42
118 119 1.202533 GGAAGCTCCATTGTAGCGCTA 60.203 52.381 14.45 14.45 44.87 4.26
119 120 0.462759 GGAAGCTCCATTGTAGCGCT 60.463 55.000 17.26 17.26 44.87 5.92
120 121 1.440145 GGGAAGCTCCATTGTAGCGC 61.440 60.000 0.00 0.00 44.87 5.92
121 122 0.815615 GGGGAAGCTCCATTGTAGCG 60.816 60.000 0.00 0.00 44.87 4.26
122 123 0.815615 CGGGGAAGCTCCATTGTAGC 60.816 60.000 0.00 0.00 38.64 3.58
123 124 0.541863 ACGGGGAAGCTCCATTGTAG 59.458 55.000 0.00 0.00 38.64 2.74
124 125 0.251916 CACGGGGAAGCTCCATTGTA 59.748 55.000 0.00 0.00 38.64 2.41
125 126 1.002134 CACGGGGAAGCTCCATTGT 60.002 57.895 0.00 0.00 38.64 2.71
126 127 1.750399 CCACGGGGAAGCTCCATTG 60.750 63.158 0.00 0.00 38.64 2.82
127 128 2.677228 CCACGGGGAAGCTCCATT 59.323 61.111 0.00 0.00 38.64 3.16
151 152 4.827087 AGCTCCATCGCAGCACCG 62.827 66.667 0.00 0.00 39.56 4.94
152 153 2.437359 AAGCTCCATCGCAGCACC 60.437 61.111 0.00 0.00 39.56 5.01
153 154 2.806856 CGAAGCTCCATCGCAGCAC 61.807 63.158 0.00 0.00 39.56 4.40
154 155 2.510012 CGAAGCTCCATCGCAGCA 60.510 61.111 0.00 0.00 39.56 4.41
176 177 2.616330 AATGCAACACTGGACGGCG 61.616 57.895 4.80 4.80 0.00 6.46
177 178 1.081242 CAATGCAACACTGGACGGC 60.081 57.895 0.00 0.00 0.00 5.68
178 179 0.888736 TCCAATGCAACACTGGACGG 60.889 55.000 6.19 0.00 34.26 4.79
179 180 0.950836 TTCCAATGCAACACTGGACG 59.049 50.000 9.09 0.00 38.97 4.79
180 181 1.956477 AGTTCCAATGCAACACTGGAC 59.044 47.619 9.09 6.08 38.97 4.02
181 182 2.363306 AGTTCCAATGCAACACTGGA 57.637 45.000 6.19 6.19 37.47 3.86
182 183 2.605338 CGAAGTTCCAATGCAACACTGG 60.605 50.000 0.00 0.00 0.00 4.00
183 184 2.033299 ACGAAGTTCCAATGCAACACTG 59.967 45.455 0.00 0.00 37.78 3.66
184 185 2.297701 ACGAAGTTCCAATGCAACACT 58.702 42.857 0.00 0.00 37.78 3.55
185 186 2.774439 ACGAAGTTCCAATGCAACAC 57.226 45.000 0.00 0.00 37.78 3.32
214 215 2.180017 CTCAATTGCAGCACCGGC 59.820 61.111 0.00 0.00 41.61 6.13
215 216 1.926511 GACCTCAATTGCAGCACCGG 61.927 60.000 0.00 0.00 0.00 5.28
216 217 1.503542 GACCTCAATTGCAGCACCG 59.496 57.895 0.00 0.00 0.00 4.94
217 218 1.885871 GGACCTCAATTGCAGCACC 59.114 57.895 0.00 2.65 0.00 5.01
218 219 1.503542 CGGACCTCAATTGCAGCAC 59.496 57.895 0.00 0.00 0.00 4.40
219 220 2.334946 GCGGACCTCAATTGCAGCA 61.335 57.895 0.00 0.00 0.00 4.41
220 221 2.486966 GCGGACCTCAATTGCAGC 59.513 61.111 0.00 0.00 0.00 5.25
221 222 2.753966 CGGCGGACCTCAATTGCAG 61.754 63.158 0.00 0.00 0.00 4.41
222 223 2.745884 CGGCGGACCTCAATTGCA 60.746 61.111 0.00 0.00 0.00 4.08
223 224 2.435938 TCGGCGGACCTCAATTGC 60.436 61.111 7.21 0.00 0.00 3.56
224 225 1.815421 CCTCGGCGGACCTCAATTG 60.815 63.158 7.21 0.00 33.16 2.32
225 226 2.240162 GACCTCGGCGGACCTCAATT 62.240 60.000 7.21 0.00 36.31 2.32
226 227 2.683933 ACCTCGGCGGACCTCAAT 60.684 61.111 7.21 0.00 36.31 2.57
227 228 3.379445 GACCTCGGCGGACCTCAA 61.379 66.667 7.21 0.00 36.31 3.02
237 238 1.811266 CAGCATTGGACGACCTCGG 60.811 63.158 5.33 0.00 44.95 4.63
238 239 2.456119 GCAGCATTGGACGACCTCG 61.456 63.158 5.33 0.00 46.33 4.63
239 240 1.364626 CTGCAGCATTGGACGACCTC 61.365 60.000 0.00 0.00 37.04 3.85
240 241 1.376424 CTGCAGCATTGGACGACCT 60.376 57.895 0.00 0.00 37.04 3.85
241 242 3.044059 GCTGCAGCATTGGACGACC 62.044 63.158 33.36 0.00 41.59 4.79
242 243 2.482374 GCTGCAGCATTGGACGAC 59.518 61.111 33.36 0.00 41.59 4.34
243 244 3.120385 CGCTGCAGCATTGGACGA 61.120 61.111 36.03 0.00 42.21 4.20
244 245 4.170062 CCGCTGCAGCATTGGACG 62.170 66.667 36.03 18.75 42.21 4.79
245 246 2.747460 TCCGCTGCAGCATTGGAC 60.747 61.111 36.03 7.35 42.21 4.02
246 247 2.437180 CTCCGCTGCAGCATTGGA 60.437 61.111 36.03 30.53 42.21 3.53
247 248 4.189188 GCTCCGCTGCAGCATTGG 62.189 66.667 36.03 28.32 42.21 3.16
248 249 3.436924 TGCTCCGCTGCAGCATTG 61.437 61.111 36.03 24.59 42.09 2.82
264 265 3.943479 TTCAACGACCCCGGCGATG 62.943 63.158 9.30 5.50 40.78 3.84
265 266 3.659089 CTTCAACGACCCCGGCGAT 62.659 63.158 9.30 0.00 40.78 4.58
266 267 4.367023 CTTCAACGACCCCGGCGA 62.367 66.667 9.30 0.00 40.78 5.54
268 269 4.699522 AGCTTCAACGACCCCGGC 62.700 66.667 0.00 0.00 40.78 6.13
269 270 2.742372 CAGCTTCAACGACCCCGG 60.742 66.667 0.00 0.00 40.78 5.73
270 271 3.423154 GCAGCTTCAACGACCCCG 61.423 66.667 0.00 0.00 42.50 5.73
271 272 3.423154 CGCAGCTTCAACGACCCC 61.423 66.667 0.00 0.00 0.00 4.95
287 288 3.104602 CTTCATTGCAGCTCCGGCG 62.105 63.158 0.00 0.00 44.37 6.46
288 289 2.768492 CCTTCATTGCAGCTCCGGC 61.768 63.158 0.00 0.00 39.06 6.13
289 290 2.117156 CCCTTCATTGCAGCTCCGG 61.117 63.158 0.00 0.00 0.00 5.14
290 291 1.372087 GACCCTTCATTGCAGCTCCG 61.372 60.000 0.00 0.00 0.00 4.63
291 292 1.372087 CGACCCTTCATTGCAGCTCC 61.372 60.000 0.00 0.00 0.00 4.70
292 293 0.674895 ACGACCCTTCATTGCAGCTC 60.675 55.000 0.00 0.00 0.00 4.09
293 294 0.250901 AACGACCCTTCATTGCAGCT 60.251 50.000 0.00 0.00 0.00 4.24
294 295 0.109597 CAACGACCCTTCATTGCAGC 60.110 55.000 0.00 0.00 0.00 5.25
295 296 0.523072 CCAACGACCCTTCATTGCAG 59.477 55.000 0.00 0.00 0.00 4.41
296 297 0.109532 TCCAACGACCCTTCATTGCA 59.890 50.000 0.00 0.00 0.00 4.08
297 298 0.804989 CTCCAACGACCCTTCATTGC 59.195 55.000 0.00 0.00 0.00 3.56
298 299 2.185004 ACTCCAACGACCCTTCATTG 57.815 50.000 0.00 0.00 0.00 2.82
299 300 2.504367 CAACTCCAACGACCCTTCATT 58.496 47.619 0.00 0.00 0.00 2.57
300 301 1.882352 GCAACTCCAACGACCCTTCAT 60.882 52.381 0.00 0.00 0.00 2.57
301 302 0.534203 GCAACTCCAACGACCCTTCA 60.534 55.000 0.00 0.00 0.00 3.02
302 303 0.534203 TGCAACTCCAACGACCCTTC 60.534 55.000 0.00 0.00 0.00 3.46
303 304 0.106918 TTGCAACTCCAACGACCCTT 60.107 50.000 0.00 0.00 0.00 3.95
304 305 0.110486 ATTGCAACTCCAACGACCCT 59.890 50.000 0.00 0.00 0.00 4.34
305 306 0.240945 CATTGCAACTCCAACGACCC 59.759 55.000 0.00 0.00 0.00 4.46
306 307 0.240945 CCATTGCAACTCCAACGACC 59.759 55.000 0.00 0.00 0.00 4.79
307 308 1.197721 CTCCATTGCAACTCCAACGAC 59.802 52.381 0.00 0.00 0.00 4.34
308 309 1.522668 CTCCATTGCAACTCCAACGA 58.477 50.000 0.00 0.00 0.00 3.85
309 310 0.109597 GCTCCATTGCAACTCCAACG 60.110 55.000 0.00 0.00 0.00 4.10
310 311 0.109597 CGCTCCATTGCAACTCCAAC 60.110 55.000 0.00 0.00 0.00 3.77
311 312 1.865788 GCGCTCCATTGCAACTCCAA 61.866 55.000 0.00 0.00 0.00 3.53
312 313 2.334946 GCGCTCCATTGCAACTCCA 61.335 57.895 0.00 0.00 0.00 3.86
313 314 2.486966 GCGCTCCATTGCAACTCC 59.513 61.111 0.00 0.00 0.00 3.85
314 315 2.334946 TGGCGCTCCATTGCAACTC 61.335 57.895 7.64 0.00 37.47 3.01
315 316 2.282391 TGGCGCTCCATTGCAACT 60.282 55.556 7.64 0.00 37.47 3.16
324 325 2.664518 GCAGCTCTATGGCGCTCC 60.665 66.667 7.64 0.00 33.45 4.70
325 326 1.955157 CAGCAGCTCTATGGCGCTC 60.955 63.158 7.64 0.00 38.92 5.03
326 327 2.108566 CAGCAGCTCTATGGCGCT 59.891 61.111 7.64 0.00 40.48 5.92
327 328 3.647978 GCAGCAGCTCTATGGCGC 61.648 66.667 0.00 0.00 37.91 6.53
328 329 2.971413 GGCAGCAGCTCTATGGCG 60.971 66.667 0.00 0.00 41.70 5.69
329 330 2.971413 CGGCAGCAGCTCTATGGC 60.971 66.667 0.00 5.97 41.70 4.40
330 331 2.280660 CCGGCAGCAGCTCTATGG 60.281 66.667 0.00 0.00 41.70 2.74
331 332 1.886313 CACCGGCAGCAGCTCTATG 60.886 63.158 0.00 0.00 41.70 2.23
332 333 2.503061 CACCGGCAGCAGCTCTAT 59.497 61.111 0.00 0.00 41.70 1.98
333 334 4.457496 GCACCGGCAGCAGCTCTA 62.457 66.667 14.06 0.00 41.70 2.43
356 357 3.275338 GCAGCTCTATGGCGCACC 61.275 66.667 10.83 0.00 37.29 5.01
357 358 2.202987 AGCAGCTCTATGGCGCAC 60.203 61.111 10.83 0.00 37.29 5.34
358 359 2.202974 CAGCAGCTCTATGGCGCA 60.203 61.111 10.83 0.00 37.29 6.09
359 360 2.202987 ACAGCAGCTCTATGGCGC 60.203 61.111 0.00 0.00 37.29 6.53
360 361 1.153489 ACACAGCAGCTCTATGGCG 60.153 57.895 0.00 0.00 37.29 5.69
361 362 1.094073 CCACACAGCAGCTCTATGGC 61.094 60.000 0.00 0.00 0.00 4.40
362 363 0.251354 ACCACACAGCAGCTCTATGG 59.749 55.000 12.15 12.15 0.00 2.74
363 364 2.005451 GAACCACACAGCAGCTCTATG 58.995 52.381 0.00 0.00 0.00 2.23
364 365 1.905215 AGAACCACACAGCAGCTCTAT 59.095 47.619 0.00 0.00 0.00 1.98
365 366 1.001293 CAGAACCACACAGCAGCTCTA 59.999 52.381 0.00 0.00 0.00 2.43
366 367 0.250209 CAGAACCACACAGCAGCTCT 60.250 55.000 0.00 0.00 0.00 4.09
367 368 1.849976 GCAGAACCACACAGCAGCTC 61.850 60.000 0.00 0.00 0.00 4.09
368 369 1.895707 GCAGAACCACACAGCAGCT 60.896 57.895 0.00 0.00 0.00 4.24
369 370 2.641559 GCAGAACCACACAGCAGC 59.358 61.111 0.00 0.00 0.00 5.25
370 371 1.526686 TGGCAGAACCACACAGCAG 60.527 57.895 0.00 0.00 46.36 4.24
371 372 2.594536 TGGCAGAACCACACAGCA 59.405 55.556 0.00 0.00 46.36 4.41
386 387 0.106335 CAGCTCACAGCCTCCTATGG 59.894 60.000 0.00 0.00 43.77 2.74
387 388 0.829333 ACAGCTCACAGCCTCCTATG 59.171 55.000 0.00 0.00 43.77 2.23
388 389 1.118838 GACAGCTCACAGCCTCCTAT 58.881 55.000 0.00 0.00 43.77 2.57
389 390 0.040351 AGACAGCTCACAGCCTCCTA 59.960 55.000 0.00 0.00 43.77 2.94
390 391 1.229145 AGACAGCTCACAGCCTCCT 60.229 57.895 0.00 0.00 43.77 3.69
391 392 1.079266 CAGACAGCTCACAGCCTCC 60.079 63.158 0.00 0.00 43.77 4.30
392 393 0.536260 ATCAGACAGCTCACAGCCTC 59.464 55.000 0.00 0.00 43.77 4.70
393 394 0.536260 GATCAGACAGCTCACAGCCT 59.464 55.000 0.00 0.00 43.77 4.58
394 395 0.805322 CGATCAGACAGCTCACAGCC 60.805 60.000 0.00 0.00 43.77 4.85
395 396 0.108898 ACGATCAGACAGCTCACAGC 60.109 55.000 0.00 0.00 42.84 4.40
396 397 2.789436 CGTACGATCAGACAGCTCACAG 60.789 54.545 10.44 0.00 0.00 3.66
397 398 1.130561 CGTACGATCAGACAGCTCACA 59.869 52.381 10.44 0.00 0.00 3.58
398 399 1.532090 CCGTACGATCAGACAGCTCAC 60.532 57.143 18.76 0.00 0.00 3.51
399 400 0.733150 CCGTACGATCAGACAGCTCA 59.267 55.000 18.76 0.00 0.00 4.26
400 401 0.592754 GCCGTACGATCAGACAGCTC 60.593 60.000 18.76 0.00 0.00 4.09
401 402 1.032657 AGCCGTACGATCAGACAGCT 61.033 55.000 18.76 11.22 0.00 4.24
402 403 0.867753 CAGCCGTACGATCAGACAGC 60.868 60.000 18.76 8.86 0.00 4.40
403 404 0.867753 GCAGCCGTACGATCAGACAG 60.868 60.000 18.76 0.00 0.00 3.51
404 405 1.138883 GCAGCCGTACGATCAGACA 59.861 57.895 18.76 0.00 0.00 3.41
405 406 1.939785 CGCAGCCGTACGATCAGAC 60.940 63.158 18.76 0.00 0.00 3.51
406 407 2.407616 CGCAGCCGTACGATCAGA 59.592 61.111 18.76 0.00 0.00 3.27
407 408 2.655364 CCGCAGCCGTACGATCAG 60.655 66.667 18.76 6.20 0.00 2.90
408 409 3.120979 CTCCGCAGCCGTACGATCA 62.121 63.158 18.76 0.00 0.00 2.92
409 410 1.779025 TACTCCGCAGCCGTACGATC 61.779 60.000 18.76 8.14 0.00 3.69
410 411 1.170919 ATACTCCGCAGCCGTACGAT 61.171 55.000 18.76 1.33 0.00 3.73
411 412 1.779025 GATACTCCGCAGCCGTACGA 61.779 60.000 18.76 0.00 0.00 3.43
412 413 1.370172 GATACTCCGCAGCCGTACG 60.370 63.158 8.69 8.69 0.00 3.67
413 414 0.317938 CAGATACTCCGCAGCCGTAC 60.318 60.000 0.00 0.00 0.00 3.67
414 415 0.464916 TCAGATACTCCGCAGCCGTA 60.465 55.000 0.00 0.00 0.00 4.02
415 416 1.320344 TTCAGATACTCCGCAGCCGT 61.320 55.000 0.00 0.00 0.00 5.68
416 417 0.872021 GTTCAGATACTCCGCAGCCG 60.872 60.000 0.00 0.00 0.00 5.52
417 418 0.872021 CGTTCAGATACTCCGCAGCC 60.872 60.000 0.00 0.00 0.00 4.85
418 419 0.872021 CCGTTCAGATACTCCGCAGC 60.872 60.000 0.00 0.00 0.00 5.25
419 420 0.738975 TCCGTTCAGATACTCCGCAG 59.261 55.000 0.00 0.00 0.00 5.18
420 421 0.454600 GTCCGTTCAGATACTCCGCA 59.545 55.000 0.00 0.00 0.00 5.69
421 422 0.591741 CGTCCGTTCAGATACTCCGC 60.592 60.000 0.00 0.00 0.00 5.54
422 423 0.029035 CCGTCCGTTCAGATACTCCG 59.971 60.000 0.00 0.00 0.00 4.63
423 424 0.248949 GCCGTCCGTTCAGATACTCC 60.249 60.000 0.00 0.00 0.00 3.85
424 425 0.739561 AGCCGTCCGTTCAGATACTC 59.260 55.000 0.00 0.00 0.00 2.59
425 426 0.739561 GAGCCGTCCGTTCAGATACT 59.260 55.000 0.00 0.00 0.00 2.12
426 427 0.739561 AGAGCCGTCCGTTCAGATAC 59.260 55.000 0.00 0.00 0.00 2.24
427 428 0.738975 CAGAGCCGTCCGTTCAGATA 59.261 55.000 0.00 0.00 0.00 1.98
428 429 0.965866 TCAGAGCCGTCCGTTCAGAT 60.966 55.000 0.00 0.00 0.00 2.90
429 430 1.587043 CTCAGAGCCGTCCGTTCAGA 61.587 60.000 0.00 0.00 0.00 3.27
430 431 1.153939 CTCAGAGCCGTCCGTTCAG 60.154 63.158 0.00 0.00 0.00 3.02
431 432 2.636412 CCTCAGAGCCGTCCGTTCA 61.636 63.158 0.00 0.00 0.00 3.18
432 433 2.182030 CCTCAGAGCCGTCCGTTC 59.818 66.667 0.00 0.00 0.00 3.95
433 434 3.382832 CCCTCAGAGCCGTCCGTT 61.383 66.667 0.00 0.00 0.00 4.44
434 435 4.361971 TCCCTCAGAGCCGTCCGT 62.362 66.667 0.00 0.00 0.00 4.69
435 436 3.522731 CTCCCTCAGAGCCGTCCG 61.523 72.222 0.00 0.00 35.31 4.79
436 437 3.151022 CCTCCCTCAGAGCCGTCC 61.151 72.222 0.00 0.00 41.74 4.79
437 438 3.844090 GCCTCCCTCAGAGCCGTC 61.844 72.222 0.00 0.00 41.74 4.79
438 439 2.516048 TAAGCCTCCCTCAGAGCCGT 62.516 60.000 0.00 0.00 41.74 5.68
439 440 1.330655 TTAAGCCTCCCTCAGAGCCG 61.331 60.000 0.00 0.00 41.74 5.52
440 441 0.912486 TTTAAGCCTCCCTCAGAGCC 59.088 55.000 0.00 0.00 41.74 4.70
441 442 2.026729 AGTTTTAAGCCTCCCTCAGAGC 60.027 50.000 0.00 0.00 41.74 4.09
442 443 3.604582 CAGTTTTAAGCCTCCCTCAGAG 58.395 50.000 0.00 0.00 42.83 3.35
443 444 2.305927 CCAGTTTTAAGCCTCCCTCAGA 59.694 50.000 0.00 0.00 0.00 3.27
444 445 2.305927 TCCAGTTTTAAGCCTCCCTCAG 59.694 50.000 0.00 0.00 0.00 3.35
445 446 2.344592 TCCAGTTTTAAGCCTCCCTCA 58.655 47.619 0.00 0.00 0.00 3.86
446 447 3.054361 TGATCCAGTTTTAAGCCTCCCTC 60.054 47.826 0.00 0.00 0.00 4.30
447 448 2.919602 TGATCCAGTTTTAAGCCTCCCT 59.080 45.455 0.00 0.00 0.00 4.20
448 449 3.366052 TGATCCAGTTTTAAGCCTCCC 57.634 47.619 0.00 0.00 0.00 4.30
449 450 5.418840 TGATTTGATCCAGTTTTAAGCCTCC 59.581 40.000 0.00 0.00 0.00 4.30
450 451 6.515272 TGATTTGATCCAGTTTTAAGCCTC 57.485 37.500 0.00 0.00 0.00 4.70
451 452 6.097412 GGATGATTTGATCCAGTTTTAAGCCT 59.903 38.462 0.00 0.00 41.59 4.58
452 453 6.276091 GGATGATTTGATCCAGTTTTAAGCC 58.724 40.000 0.00 0.00 41.59 4.35
453 454 5.973565 CGGATGATTTGATCCAGTTTTAAGC 59.026 40.000 0.00 0.00 42.01 3.09
454 455 7.066284 AGTCGGATGATTTGATCCAGTTTTAAG 59.934 37.037 0.00 0.00 42.01 1.85
455 456 6.884295 AGTCGGATGATTTGATCCAGTTTTAA 59.116 34.615 0.00 0.00 42.01 1.52
456 457 6.316140 CAGTCGGATGATTTGATCCAGTTTTA 59.684 38.462 0.00 0.00 42.01 1.52
457 458 5.124457 CAGTCGGATGATTTGATCCAGTTTT 59.876 40.000 0.00 0.00 42.01 2.43
458 459 4.637534 CAGTCGGATGATTTGATCCAGTTT 59.362 41.667 0.00 0.00 42.01 2.66
459 460 4.194640 CAGTCGGATGATTTGATCCAGTT 58.805 43.478 0.00 0.00 42.01 3.16
460 461 3.432749 CCAGTCGGATGATTTGATCCAGT 60.433 47.826 0.00 0.00 42.01 4.00
461 462 3.136763 CCAGTCGGATGATTTGATCCAG 58.863 50.000 0.00 0.00 42.01 3.86
462 463 2.505407 ACCAGTCGGATGATTTGATCCA 59.495 45.455 0.00 0.00 42.01 3.41
463 464 3.134458 GACCAGTCGGATGATTTGATCC 58.866 50.000 0.00 0.00 38.93 3.36
464 465 3.134458 GGACCAGTCGGATGATTTGATC 58.866 50.000 0.00 0.00 35.59 2.92
465 466 2.483714 CGGACCAGTCGGATGATTTGAT 60.484 50.000 0.00 0.00 35.59 2.57
466 467 1.134818 CGGACCAGTCGGATGATTTGA 60.135 52.381 0.00 0.00 35.59 2.69
467 468 1.290203 CGGACCAGTCGGATGATTTG 58.710 55.000 0.00 0.00 35.59 2.32
468 469 0.902531 ACGGACCAGTCGGATGATTT 59.097 50.000 11.78 0.00 35.59 2.17
469 470 1.681793 CTACGGACCAGTCGGATGATT 59.318 52.381 11.78 0.00 35.59 2.57
470 471 1.319541 CTACGGACCAGTCGGATGAT 58.680 55.000 11.78 0.00 35.59 2.45
471 472 1.381928 GCTACGGACCAGTCGGATGA 61.382 60.000 11.78 0.00 35.59 2.92
472 473 1.065928 GCTACGGACCAGTCGGATG 59.934 63.158 11.78 5.51 35.59 3.51
473 474 0.968901 TTGCTACGGACCAGTCGGAT 60.969 55.000 11.78 0.44 35.59 4.18
474 475 0.968901 ATTGCTACGGACCAGTCGGA 60.969 55.000 11.78 0.00 35.59 4.55
475 476 0.527817 GATTGCTACGGACCAGTCGG 60.528 60.000 4.02 4.02 38.77 4.79
476 477 0.866061 CGATTGCTACGGACCAGTCG 60.866 60.000 0.00 0.00 35.47 4.18
477 478 1.146358 GCGATTGCTACGGACCAGTC 61.146 60.000 0.00 0.00 38.39 3.51
478 479 1.153628 GCGATTGCTACGGACCAGT 60.154 57.895 0.00 0.00 38.39 4.00
479 480 1.883084 GGCGATTGCTACGGACCAG 60.883 63.158 4.59 0.00 42.25 4.00
480 481 1.966901 ATGGCGATTGCTACGGACCA 61.967 55.000 4.59 0.00 42.25 4.02
481 482 0.032952 TATGGCGATTGCTACGGACC 59.967 55.000 4.59 0.00 42.25 4.46
482 483 1.137513 GTATGGCGATTGCTACGGAC 58.862 55.000 4.59 0.00 42.25 4.79
483 484 0.318360 CGTATGGCGATTGCTACGGA 60.318 55.000 15.56 0.00 44.77 4.69
484 485 0.318360 TCGTATGGCGATTGCTACGG 60.318 55.000 20.51 7.82 45.68 4.02
485 486 3.173247 TCGTATGGCGATTGCTACG 57.827 52.632 16.72 16.72 45.68 3.51
580 581 3.997064 CTCTCTGCCTTGGACGCGG 62.997 68.421 12.47 0.00 0.00 6.46
600 601 0.535102 GTTCCCTCCCACTGTGTGTG 60.535 60.000 7.08 0.00 45.80 3.82
601 602 1.837090 GTTCCCTCCCACTGTGTGT 59.163 57.895 7.08 0.00 0.00 3.72
602 603 1.301716 CGTTCCCTCCCACTGTGTG 60.302 63.158 7.08 0.00 0.00 3.82
652 653 2.350772 CCCAATCAACGCACAGAAGTTC 60.351 50.000 0.00 0.00 0.00 3.01
679 680 3.855853 GCGAGGAAGAGGGGAGGC 61.856 72.222 0.00 0.00 0.00 4.70
695 720 3.670377 GGGGCTGTGGTTTGTCGC 61.670 66.667 0.00 0.00 0.00 5.19
769 795 5.511363 TCCAAAAACCAAAAGTAGGTCAGA 58.489 37.500 0.00 0.00 38.76 3.27
771 797 4.098807 GCTCCAAAAACCAAAAGTAGGTCA 59.901 41.667 0.00 0.00 38.76 4.02
843 871 4.741239 GAGGGGGAGGGGACAGCA 62.741 72.222 0.00 0.00 0.00 4.41
892 922 4.704833 CTGGTGAGTGGTGGCGGG 62.705 72.222 0.00 0.00 0.00 6.13
894 924 4.320456 AGCTGGTGAGTGGTGGCG 62.320 66.667 0.00 0.00 0.00 5.69
895 925 2.359230 GAGCTGGTGAGTGGTGGC 60.359 66.667 0.00 0.00 0.00 5.01
896 926 2.047844 CGAGCTGGTGAGTGGTGG 60.048 66.667 0.00 0.00 0.00 4.61
897 927 1.373497 GTCGAGCTGGTGAGTGGTG 60.373 63.158 0.00 0.00 0.00 4.17
898 928 1.528292 GAGTCGAGCTGGTGAGTGGT 61.528 60.000 0.00 0.00 0.00 4.16
1019 1052 3.685214 CTGGCCGAGGAAGACGACG 62.685 68.421 0.00 0.00 0.00 5.12
1020 1053 2.182030 CTGGCCGAGGAAGACGAC 59.818 66.667 0.00 0.00 0.00 4.34
1021 1054 2.282958 ACTGGCCGAGGAAGACGA 60.283 61.111 0.00 0.00 0.00 4.20
1118 1154 2.278857 CCGCGACGATCTTGGAGG 60.279 66.667 8.23 0.00 0.00 4.30
1137 1173 1.513622 GAAGAGGAGGTGCGAGGAC 59.486 63.158 0.00 0.00 0.00 3.85
1785 1854 3.699955 CTCGGAGAATGGCGCGTCA 62.700 63.158 19.03 19.03 34.09 4.35
2311 2383 2.530916 GGTGGTGGGGTGGTACCT 60.531 66.667 14.36 0.00 38.64 3.08
2519 2591 2.802247 CGAGAACAGAATGCACACTTGA 59.198 45.455 0.00 0.00 42.53 3.02
2549 2621 2.829206 TTGTGCAAGACAACCGCCG 61.829 57.895 0.00 0.00 39.78 6.46
2582 2654 2.680513 GCAATGGCTTAAACAATGGGGG 60.681 50.000 0.00 0.00 36.96 5.40
2604 2676 0.114954 ATCAAGGGGGAAAAGCAGCA 59.885 50.000 0.00 0.00 0.00 4.41
2606 2678 2.220653 TCATCAAGGGGGAAAAGCAG 57.779 50.000 0.00 0.00 0.00 4.24
2776 2849 0.458669 TTTATCGTGTCCTCCTCGCC 59.541 55.000 0.00 0.00 0.00 5.54
2888 2962 8.037758 TCACAAAACACAAGACAAATTAACCAT 58.962 29.630 0.00 0.00 0.00 3.55
2971 3056 2.811317 GCTGCTCGGACGGACTTG 60.811 66.667 0.00 0.00 0.00 3.16
3018 3105 4.226761 CAAATCCACCGTCAAGCTTTAAC 58.773 43.478 0.00 0.00 0.00 2.01
3193 3297 5.932303 TCAAACAAATTAACTCTCTCCCTCG 59.068 40.000 0.00 0.00 0.00 4.63
3197 3301 5.707764 AGGCTCAAACAAATTAACTCTCTCC 59.292 40.000 0.00 0.00 0.00 3.71
3201 3305 5.833131 TCCAAGGCTCAAACAAATTAACTCT 59.167 36.000 0.00 0.00 0.00 3.24
3233 3337 4.040339 TGTGATGCTACTGGAAAGAAGTGA 59.960 41.667 0.00 0.00 0.00 3.41
3258 3362 4.685169 AACATCAATGTACGAAAGGCTG 57.315 40.909 0.00 0.00 40.80 4.85
3266 3374 5.034554 ACAGCAAGAAACATCAATGTACG 57.965 39.130 0.00 0.00 40.80 3.67
3293 3401 2.434884 CAGTCATCACGCCGCCTT 60.435 61.111 0.00 0.00 0.00 4.35
3318 3426 3.935203 CACAAGAGGATTCGTGCATTAGT 59.065 43.478 0.00 0.00 36.43 2.24
3321 3429 2.086869 CCACAAGAGGATTCGTGCATT 58.913 47.619 0.00 0.00 36.43 3.56
3369 3499 6.354130 GCCATTGTGTTTAGTAGGAATCCTA 58.646 40.000 4.61 4.61 34.61 2.94
3387 3517 2.133281 TCTCTGACCAATGGCCATTG 57.867 50.000 40.28 40.28 45.77 2.82
3396 3526 5.534278 TGTATTGCAAAACATCTCTGACCAA 59.466 36.000 1.71 0.00 0.00 3.67
3397 3527 5.069318 TGTATTGCAAAACATCTCTGACCA 58.931 37.500 1.71 0.00 0.00 4.02
3398 3528 5.627499 TGTATTGCAAAACATCTCTGACC 57.373 39.130 1.71 0.00 0.00 4.02
3399 3529 9.793252 ATTATTGTATTGCAAAACATCTCTGAC 57.207 29.630 1.71 0.00 40.91 3.51
3401 3531 8.950961 CGATTATTGTATTGCAAAACATCTCTG 58.049 33.333 1.71 0.00 40.91 3.35
3402 3532 8.677300 ACGATTATTGTATTGCAAAACATCTCT 58.323 29.630 1.71 0.00 40.91 3.10
3403 3533 8.841444 ACGATTATTGTATTGCAAAACATCTC 57.159 30.769 1.71 0.00 40.91 2.75
3404 3534 9.075519 CAACGATTATTGTATTGCAAAACATCT 57.924 29.630 1.71 0.00 40.91 2.90
3405 3535 8.859156 ACAACGATTATTGTATTGCAAAACATC 58.141 29.630 1.71 0.00 41.04 3.06
3406 3536 8.755696 ACAACGATTATTGTATTGCAAAACAT 57.244 26.923 1.71 0.00 41.04 2.71
3422 3552 9.006839 ACCGATACTCTATCAATACAACGATTA 57.993 33.333 0.00 0.00 34.87 1.75
3423 3553 7.808381 CACCGATACTCTATCAATACAACGATT 59.192 37.037 0.00 0.00 34.87 3.34
3424 3554 7.306213 CACCGATACTCTATCAATACAACGAT 58.694 38.462 0.00 0.00 34.87 3.73
3425 3555 6.665465 CACCGATACTCTATCAATACAACGA 58.335 40.000 0.00 0.00 34.87 3.85
3426 3556 5.342525 GCACCGATACTCTATCAATACAACG 59.657 44.000 0.00 0.00 34.87 4.10
3427 3557 6.144080 GTGCACCGATACTCTATCAATACAAC 59.856 42.308 5.22 0.00 34.87 3.32
3428 3558 6.213677 GTGCACCGATACTCTATCAATACAA 58.786 40.000 5.22 0.00 34.87 2.41
3429 3559 5.562113 CGTGCACCGATACTCTATCAATACA 60.562 44.000 12.15 0.00 39.56 2.29
3430 3560 4.852104 CGTGCACCGATACTCTATCAATAC 59.148 45.833 12.15 0.00 39.56 1.89
3431 3561 4.517832 ACGTGCACCGATACTCTATCAATA 59.482 41.667 12.15 0.00 40.70 1.90
3432 3562 3.318275 ACGTGCACCGATACTCTATCAAT 59.682 43.478 12.15 0.00 40.70 2.57
3433 3563 2.686405 ACGTGCACCGATACTCTATCAA 59.314 45.455 12.15 0.00 40.70 2.57
3434 3564 2.294979 ACGTGCACCGATACTCTATCA 58.705 47.619 12.15 0.00 40.70 2.15
3435 3565 4.681835 ATACGTGCACCGATACTCTATC 57.318 45.455 12.15 0.00 40.70 2.08
3436 3566 9.551734 TTATATATACGTGCACCGATACTCTAT 57.448 33.333 12.15 6.82 40.70 1.98
3437 3567 8.947055 TTATATATACGTGCACCGATACTCTA 57.053 34.615 12.15 0.00 40.70 2.43
3438 3568 7.551974 ACTTATATATACGTGCACCGATACTCT 59.448 37.037 12.15 0.00 40.70 3.24
3439 3569 7.692088 ACTTATATATACGTGCACCGATACTC 58.308 38.462 12.15 0.00 40.70 2.59
3440 3570 7.621428 ACTTATATATACGTGCACCGATACT 57.379 36.000 12.15 3.58 40.70 2.12
3441 3571 9.941664 AATACTTATATATACGTGCACCGATAC 57.058 33.333 12.15 0.00 40.70 2.24
3442 3572 9.940166 CAATACTTATATATACGTGCACCGATA 57.060 33.333 12.15 9.43 40.70 2.92
3443 3573 7.919091 CCAATACTTATATATACGTGCACCGAT 59.081 37.037 12.15 7.32 40.70 4.18
3444 3574 7.121020 TCCAATACTTATATATACGTGCACCGA 59.879 37.037 12.15 0.00 40.70 4.69
3445 3575 7.252708 TCCAATACTTATATATACGTGCACCG 58.747 38.462 12.15 9.19 44.03 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.