Multiple sequence alignment - TraesCS7A01G256500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G256500 chr7A 100.000 3535 0 0 1 3535 245469143 245472677 0.000000e+00 6529
1 TraesCS7A01G256500 chr7A 92.971 313 22 0 284 596 690129121 690128809 1.160000e-124 457
2 TraesCS7A01G256500 chr7B 93.933 1434 73 7 1692 3120 204897192 204895768 0.000000e+00 2154
3 TraesCS7A01G256500 chr7B 93.135 1078 55 10 601 1670 204898232 204897166 0.000000e+00 1563
4 TraesCS7A01G256500 chr7B 94.366 426 15 6 3117 3535 204895698 204895275 0.000000e+00 645
5 TraesCS7A01G256500 chr7D 95.442 1053 38 5 2069 3120 233649706 233648663 0.000000e+00 1670
6 TraesCS7A01G256500 chr7D 94.340 1060 50 4 621 1670 233651234 233650175 0.000000e+00 1616
7 TraesCS7A01G256500 chr7D 94.326 423 15 4 3117 3535 233648565 233648148 1.070000e-179 640
8 TraesCS7A01G256500 chr7D 95.822 383 13 1 1692 2071 233650201 233649819 1.800000e-172 616
9 TraesCS7A01G256500 chr7D 89.723 253 16 6 6 249 204444686 204444937 7.370000e-82 315
10 TraesCS7A01G256500 chr2A 92.381 315 22 2 284 596 745402972 745402658 6.960000e-122 448
11 TraesCS7A01G256500 chr2A 88.492 252 23 5 4 249 33557066 33556815 2.060000e-77 300
12 TraesCS7A01G256500 chr3A 92.089 316 25 0 281 596 690436417 690436732 2.500000e-121 446
13 TraesCS7A01G256500 chr3B 92.532 308 21 2 289 596 330781845 330781540 1.160000e-119 440
14 TraesCS7A01G256500 chr5A 91.346 312 26 1 286 596 26956984 26956673 3.260000e-115 425
15 TraesCS7A01G256500 chr5A 91.083 314 27 1 284 596 228894954 228895267 1.170000e-114 424
16 TraesCS7A01G256500 chr5A 90.421 261 14 5 4 253 423456964 423457224 2.030000e-87 333
17 TraesCS7A01G256500 chr5A 89.695 262 18 5 1 253 423551022 423551283 3.400000e-85 326
18 TraesCS7A01G256500 chr4A 90.881 318 28 1 282 598 613414525 613414208 3.260000e-115 425
19 TraesCS7A01G256500 chr2D 90.596 319 29 1 281 598 36275111 36275429 4.220000e-114 422
20 TraesCS7A01G256500 chr2D 89.558 249 20 5 6 249 133248565 133248318 9.530000e-81 311
21 TraesCS7A01G256500 chr1A 88.184 347 36 5 282 624 396864004 396863659 3.280000e-110 409
22 TraesCS7A01G256500 chr1A 89.412 255 17 9 4 255 91497657 91497410 2.650000e-81 313
23 TraesCS7A01G256500 chr6A 89.734 263 14 10 4 254 598641413 598641674 1.220000e-84 324
24 TraesCS7A01G256500 chr5D 88.353 249 18 8 6 245 465705692 465705938 4.460000e-74 289
25 TraesCS7A01G256500 chr4D 87.500 264 15 12 2 249 461397886 461398147 4.460000e-74 289


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G256500 chr7A 245469143 245472677 3534 False 6529.0 6529 100.000000 1 3535 1 chr7A.!!$F1 3534
1 TraesCS7A01G256500 chr7B 204895275 204898232 2957 True 1454.0 2154 93.811333 601 3535 3 chr7B.!!$R1 2934
2 TraesCS7A01G256500 chr7D 233648148 233651234 3086 True 1135.5 1670 94.982500 621 3535 4 chr7D.!!$R1 2914


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 194 0.035317 AATGACTGAGAGCGTGCCAA 59.965 50.0 0.0 0.0 0.0 4.52 F
867 869 0.036010 AAGCAGGAATCACGGACCAG 60.036 55.0 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 1653 1.247567 AGTCGCAAGGAAAACATGGG 58.752 50.0 0.0 0.0 38.47 4.00 R
2696 2829 0.036952 CAACCGACCAGAGCATCACT 60.037 55.0 0.0 0.0 37.82 3.41 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 7.829378 TTTTATCGAGAAGCTAAGAAAGACC 57.171 36.000 0.00 0.00 0.00 3.85
67 68 3.489180 TCGAGAAGCTAAGAAAGACCG 57.511 47.619 0.00 0.00 0.00 4.79
68 69 2.163815 TCGAGAAGCTAAGAAAGACCGG 59.836 50.000 0.00 0.00 0.00 5.28
69 70 2.735762 CGAGAAGCTAAGAAAGACCGGG 60.736 54.545 6.32 0.00 0.00 5.73
70 71 2.496470 GAGAAGCTAAGAAAGACCGGGA 59.504 50.000 6.32 0.00 0.00 5.14
71 72 2.498078 AGAAGCTAAGAAAGACCGGGAG 59.502 50.000 6.32 0.00 0.00 4.30
72 73 2.233305 AGCTAAGAAAGACCGGGAGA 57.767 50.000 6.32 0.00 0.00 3.71
73 74 2.537143 AGCTAAGAAAGACCGGGAGAA 58.463 47.619 6.32 0.00 0.00 2.87
74 75 2.904434 AGCTAAGAAAGACCGGGAGAAA 59.096 45.455 6.32 0.00 0.00 2.52
75 76 3.326880 AGCTAAGAAAGACCGGGAGAAAA 59.673 43.478 6.32 0.00 0.00 2.29
76 77 3.436015 GCTAAGAAAGACCGGGAGAAAAC 59.564 47.826 6.32 0.00 0.00 2.43
77 78 2.563261 AGAAAGACCGGGAGAAAACC 57.437 50.000 6.32 0.00 0.00 3.27
78 79 1.772453 AGAAAGACCGGGAGAAAACCA 59.228 47.619 6.32 0.00 0.00 3.67
79 80 2.173996 AGAAAGACCGGGAGAAAACCAA 59.826 45.455 6.32 0.00 0.00 3.67
80 81 2.740506 AAGACCGGGAGAAAACCAAA 57.259 45.000 6.32 0.00 0.00 3.28
81 82 2.740506 AGACCGGGAGAAAACCAAAA 57.259 45.000 6.32 0.00 0.00 2.44
82 83 2.304092 AGACCGGGAGAAAACCAAAAC 58.696 47.619 6.32 0.00 0.00 2.43
83 84 1.002142 GACCGGGAGAAAACCAAAACG 60.002 52.381 6.32 0.00 0.00 3.60
84 85 1.026584 CCGGGAGAAAACCAAAACGT 58.973 50.000 0.00 0.00 0.00 3.99
85 86 1.002142 CCGGGAGAAAACCAAAACGTC 60.002 52.381 0.00 0.00 0.00 4.34
86 87 1.671845 CGGGAGAAAACCAAAACGTCA 59.328 47.619 0.00 0.00 0.00 4.35
87 88 2.097791 CGGGAGAAAACCAAAACGTCAA 59.902 45.455 0.00 0.00 0.00 3.18
88 89 3.427773 CGGGAGAAAACCAAAACGTCAAA 60.428 43.478 0.00 0.00 0.00 2.69
89 90 4.496360 GGGAGAAAACCAAAACGTCAAAA 58.504 39.130 0.00 0.00 0.00 2.44
90 91 4.930405 GGGAGAAAACCAAAACGTCAAAAA 59.070 37.500 0.00 0.00 0.00 1.94
126 127 3.130797 CGTTTAAAAAGCCGAAAACGC 57.869 42.857 6.30 0.00 44.94 4.84
127 128 2.406245 CGTTTAAAAAGCCGAAAACGCG 60.406 45.455 3.53 3.53 44.94 6.01
128 129 2.471862 TTAAAAAGCCGAAAACGCGT 57.528 40.000 5.58 5.58 0.00 6.01
129 130 1.744374 TAAAAAGCCGAAAACGCGTG 58.256 45.000 14.98 0.00 0.00 5.34
130 131 1.476235 AAAAAGCCGAAAACGCGTGC 61.476 50.000 14.98 12.13 0.00 5.34
131 132 4.659874 AAGCCGAAAACGCGTGCG 62.660 61.111 14.98 17.33 46.03 5.34
133 134 4.653252 GCCGAAAACGCGTGCGAA 62.653 61.111 24.61 0.00 42.83 4.70
134 135 2.052941 CCGAAAACGCGTGCGAAA 60.053 55.556 24.61 0.00 42.83 3.46
135 136 1.651730 CCGAAAACGCGTGCGAAAA 60.652 52.632 24.61 0.00 42.83 2.29
136 137 1.194896 CCGAAAACGCGTGCGAAAAA 61.195 50.000 24.61 0.00 42.83 1.94
155 156 3.660501 AAAAATTCAAAGGGAGCGTCC 57.339 42.857 0.00 0.00 35.23 4.79
156 157 2.286365 AAATTCAAAGGGAGCGTCCA 57.714 45.000 6.41 0.00 38.64 4.02
157 158 1.826385 AATTCAAAGGGAGCGTCCAG 58.174 50.000 6.41 0.00 38.64 3.86
158 159 0.984230 ATTCAAAGGGAGCGTCCAGA 59.016 50.000 6.41 0.00 38.64 3.86
159 160 0.321671 TTCAAAGGGAGCGTCCAGAG 59.678 55.000 6.41 0.00 38.64 3.35
160 161 1.743252 CAAAGGGAGCGTCCAGAGC 60.743 63.158 6.41 0.00 38.64 4.09
161 162 3.302347 AAAGGGAGCGTCCAGAGCG 62.302 63.158 6.41 0.00 38.64 5.03
169 170 4.702081 GTCCAGAGCGCGACACGT 62.702 66.667 12.10 0.00 46.11 4.49
170 171 4.700365 TCCAGAGCGCGACACGTG 62.700 66.667 15.48 15.48 46.11 4.49
180 181 4.261888 GACACGTGGCGAATGACT 57.738 55.556 21.57 0.00 0.00 3.41
181 182 1.781555 GACACGTGGCGAATGACTG 59.218 57.895 21.57 0.00 0.00 3.51
182 183 0.666274 GACACGTGGCGAATGACTGA 60.666 55.000 21.57 0.00 0.00 3.41
183 184 0.667487 ACACGTGGCGAATGACTGAG 60.667 55.000 21.57 0.00 0.00 3.35
184 185 0.388520 CACGTGGCGAATGACTGAGA 60.389 55.000 7.95 0.00 0.00 3.27
185 186 0.109086 ACGTGGCGAATGACTGAGAG 60.109 55.000 0.00 0.00 0.00 3.20
186 187 1.416813 CGTGGCGAATGACTGAGAGC 61.417 60.000 0.00 0.00 0.00 4.09
187 188 1.153765 TGGCGAATGACTGAGAGCG 60.154 57.895 0.00 0.00 0.00 5.03
188 189 1.153745 GGCGAATGACTGAGAGCGT 60.154 57.895 0.00 0.00 0.00 5.07
189 190 1.416813 GGCGAATGACTGAGAGCGTG 61.417 60.000 0.00 0.00 0.00 5.34
190 191 1.994467 CGAATGACTGAGAGCGTGC 59.006 57.895 0.00 0.00 0.00 5.34
191 192 1.416813 CGAATGACTGAGAGCGTGCC 61.417 60.000 0.00 0.00 0.00 5.01
192 193 0.390340 GAATGACTGAGAGCGTGCCA 60.390 55.000 0.00 0.00 0.00 4.92
193 194 0.035317 AATGACTGAGAGCGTGCCAA 59.965 50.000 0.00 0.00 0.00 4.52
194 195 0.390866 ATGACTGAGAGCGTGCCAAG 60.391 55.000 0.00 0.00 0.00 3.61
195 196 1.005630 GACTGAGAGCGTGCCAAGT 60.006 57.895 0.00 0.00 0.00 3.16
196 197 1.287730 GACTGAGAGCGTGCCAAGTG 61.288 60.000 0.00 0.00 0.00 3.16
197 198 2.031012 TGAGAGCGTGCCAAGTGG 59.969 61.111 0.00 0.00 38.53 4.00
207 208 2.434884 CCAAGTGGCGCTGATCGT 60.435 61.111 7.64 0.00 41.07 3.73
208 209 2.034879 CCAAGTGGCGCTGATCGTT 61.035 57.895 7.64 0.00 41.07 3.85
209 210 1.133253 CAAGTGGCGCTGATCGTTG 59.867 57.895 7.64 0.00 41.07 4.10
210 211 2.680913 AAGTGGCGCTGATCGTTGC 61.681 57.895 7.64 0.00 41.07 4.17
216 217 2.510238 GCTGATCGTTGCGAGGCT 60.510 61.111 0.00 0.00 39.91 4.58
217 218 2.806856 GCTGATCGTTGCGAGGCTG 61.807 63.158 0.00 0.00 39.91 4.85
218 219 2.806856 CTGATCGTTGCGAGGCTGC 61.807 63.158 0.00 0.00 39.91 5.25
219 220 3.567797 GATCGTTGCGAGGCTGCC 61.568 66.667 11.65 11.65 39.91 4.85
223 224 3.793144 GTTGCGAGGCTGCCGAAG 61.793 66.667 13.96 9.75 0.00 3.79
224 225 4.002506 TTGCGAGGCTGCCGAAGA 62.003 61.111 13.96 0.00 0.00 2.87
225 226 3.529341 TTGCGAGGCTGCCGAAGAA 62.529 57.895 13.96 0.00 0.00 2.52
226 227 3.191539 GCGAGGCTGCCGAAGAAG 61.192 66.667 13.96 3.57 0.00 2.85
227 228 3.191539 CGAGGCTGCCGAAGAAGC 61.192 66.667 13.96 0.00 36.50 3.86
228 229 3.191539 GAGGCTGCCGAAGAAGCG 61.192 66.667 13.96 0.00 37.79 4.68
231 232 3.858989 GCTGCCGAAGAAGCGCTC 61.859 66.667 12.06 4.30 0.00 5.03
232 233 3.549150 CTGCCGAAGAAGCGCTCG 61.549 66.667 12.06 10.54 0.00 5.03
233 234 4.357947 TGCCGAAGAAGCGCTCGT 62.358 61.111 12.06 2.20 0.00 4.18
234 235 3.112709 GCCGAAGAAGCGCTCGTT 61.113 61.111 12.06 7.24 0.00 3.85
235 236 1.804326 GCCGAAGAAGCGCTCGTTA 60.804 57.895 12.06 0.00 0.00 3.18
236 237 1.349259 GCCGAAGAAGCGCTCGTTAA 61.349 55.000 12.06 0.00 0.00 2.01
237 238 0.365859 CCGAAGAAGCGCTCGTTAAC 59.634 55.000 12.06 0.00 0.00 2.01
238 239 1.337821 CGAAGAAGCGCTCGTTAACT 58.662 50.000 12.06 0.00 0.00 2.24
239 240 2.512885 CGAAGAAGCGCTCGTTAACTA 58.487 47.619 12.06 0.00 0.00 2.24
240 241 2.526688 CGAAGAAGCGCTCGTTAACTAG 59.473 50.000 12.06 3.24 0.00 2.57
241 242 3.500014 GAAGAAGCGCTCGTTAACTAGT 58.500 45.455 12.06 0.00 0.00 2.57
242 243 3.572604 AGAAGCGCTCGTTAACTAGTT 57.427 42.857 12.06 13.68 0.00 2.24
243 244 3.243336 AGAAGCGCTCGTTAACTAGTTG 58.757 45.455 18.56 1.62 0.00 3.16
244 245 1.347320 AGCGCTCGTTAACTAGTTGC 58.653 50.000 18.56 11.18 0.00 4.17
245 246 0.369248 GCGCTCGTTAACTAGTTGCC 59.631 55.000 18.56 7.27 0.00 4.52
246 247 0.997196 CGCTCGTTAACTAGTTGCCC 59.003 55.000 18.56 4.84 0.00 5.36
247 248 1.366679 GCTCGTTAACTAGTTGCCCC 58.633 55.000 18.56 2.45 0.00 5.80
248 249 2.010544 GCTCGTTAACTAGTTGCCCCC 61.011 57.143 18.56 0.76 0.00 5.40
268 269 2.536761 CTGAACGTACCAGGAACCAA 57.463 50.000 9.33 0.00 0.00 3.67
269 270 2.841215 CTGAACGTACCAGGAACCAAA 58.159 47.619 9.33 0.00 0.00 3.28
270 271 2.546789 CTGAACGTACCAGGAACCAAAC 59.453 50.000 9.33 0.00 0.00 2.93
271 272 2.093075 TGAACGTACCAGGAACCAAACA 60.093 45.455 0.00 0.00 0.00 2.83
272 273 1.957668 ACGTACCAGGAACCAAACAC 58.042 50.000 0.00 0.00 0.00 3.32
273 274 0.863144 CGTACCAGGAACCAAACACG 59.137 55.000 0.00 0.00 0.00 4.49
274 275 0.589708 GTACCAGGAACCAAACACGC 59.410 55.000 0.00 0.00 0.00 5.34
275 276 0.535553 TACCAGGAACCAAACACGCC 60.536 55.000 0.00 0.00 0.00 5.68
276 277 2.561037 CCAGGAACCAAACACGCCC 61.561 63.158 0.00 0.00 0.00 6.13
277 278 1.528309 CAGGAACCAAACACGCCCT 60.528 57.895 0.00 0.00 0.00 5.19
278 279 1.106944 CAGGAACCAAACACGCCCTT 61.107 55.000 0.00 0.00 0.00 3.95
279 280 0.475044 AGGAACCAAACACGCCCTTA 59.525 50.000 0.00 0.00 0.00 2.69
280 281 1.133730 AGGAACCAAACACGCCCTTAA 60.134 47.619 0.00 0.00 0.00 1.85
281 282 1.890489 GGAACCAAACACGCCCTTAAT 59.110 47.619 0.00 0.00 0.00 1.40
282 283 3.083293 GGAACCAAACACGCCCTTAATA 58.917 45.455 0.00 0.00 0.00 0.98
283 284 3.506844 GGAACCAAACACGCCCTTAATAA 59.493 43.478 0.00 0.00 0.00 1.40
284 285 4.380128 GGAACCAAACACGCCCTTAATAAG 60.380 45.833 0.00 0.00 0.00 1.73
298 299 6.510879 CCTTAATAAGGGTCTGTTTGGTTC 57.489 41.667 11.17 0.00 45.27 3.62
299 300 5.123344 CCTTAATAAGGGTCTGTTTGGTTCG 59.877 44.000 11.17 0.00 45.27 3.95
300 301 4.360951 AATAAGGGTCTGTTTGGTTCGA 57.639 40.909 0.00 0.00 0.00 3.71
301 302 2.721425 AAGGGTCTGTTTGGTTCGAA 57.279 45.000 0.00 0.00 0.00 3.71
302 303 2.951229 AGGGTCTGTTTGGTTCGAAT 57.049 45.000 0.00 0.00 0.00 3.34
303 304 4.360951 AAGGGTCTGTTTGGTTCGAATA 57.639 40.909 0.00 0.00 0.00 1.75
304 305 4.360951 AGGGTCTGTTTGGTTCGAATAA 57.639 40.909 0.00 0.00 0.00 1.40
305 306 4.324267 AGGGTCTGTTTGGTTCGAATAAG 58.676 43.478 0.00 0.00 0.00 1.73
306 307 4.070009 GGGTCTGTTTGGTTCGAATAAGT 58.930 43.478 0.00 0.00 0.00 2.24
307 308 4.153655 GGGTCTGTTTGGTTCGAATAAGTC 59.846 45.833 0.00 0.00 0.00 3.01
308 309 4.753107 GGTCTGTTTGGTTCGAATAAGTCA 59.247 41.667 0.00 3.68 0.00 3.41
309 310 5.333875 GGTCTGTTTGGTTCGAATAAGTCAC 60.334 44.000 0.00 0.00 0.00 3.67
310 311 4.753107 TCTGTTTGGTTCGAATAAGTCACC 59.247 41.667 0.00 0.00 0.00 4.02
311 312 4.710324 TGTTTGGTTCGAATAAGTCACCT 58.290 39.130 0.00 0.00 0.00 4.00
312 313 4.513692 TGTTTGGTTCGAATAAGTCACCTG 59.486 41.667 0.00 0.00 0.00 4.00
313 314 4.610605 TTGGTTCGAATAAGTCACCTGA 57.389 40.909 0.00 0.00 0.00 3.86
314 315 3.921677 TGGTTCGAATAAGTCACCTGAC 58.078 45.455 0.00 0.00 45.08 3.51
344 345 6.229561 GTCAGGTGACTTAAAATCAGTGAC 57.770 41.667 0.00 12.02 41.65 3.67
345 346 5.992217 GTCAGGTGACTTAAAATCAGTGACT 59.008 40.000 16.19 0.00 41.65 3.41
346 347 6.483640 GTCAGGTGACTTAAAATCAGTGACTT 59.516 38.462 16.19 0.00 41.65 3.01
347 348 7.656137 GTCAGGTGACTTAAAATCAGTGACTTA 59.344 37.037 16.19 0.00 41.65 2.24
348 349 8.375506 TCAGGTGACTTAAAATCAGTGACTTAT 58.624 33.333 0.00 0.00 40.21 1.73
349 350 9.653287 CAGGTGACTTAAAATCAGTGACTTATA 57.347 33.333 0.00 0.00 40.21 0.98
363 364 3.611766 ACTTATAAGTCACGCCTGCTT 57.388 42.857 12.50 0.00 32.86 3.91
364 365 3.262420 ACTTATAAGTCACGCCTGCTTG 58.738 45.455 12.50 0.00 32.86 4.01
365 366 2.309528 TATAAGTCACGCCTGCTTGG 57.690 50.000 0.00 0.00 39.35 3.61
366 367 0.324943 ATAAGTCACGCCTGCTTGGT 59.675 50.000 0.00 0.00 38.35 3.67
367 368 0.107831 TAAGTCACGCCTGCTTGGTT 59.892 50.000 0.00 0.00 38.35 3.67
368 369 0.107831 AAGTCACGCCTGCTTGGTTA 59.892 50.000 0.00 0.00 38.35 2.85
369 370 0.324943 AGTCACGCCTGCTTGGTTAT 59.675 50.000 0.00 0.00 38.35 1.89
370 371 0.727398 GTCACGCCTGCTTGGTTATC 59.273 55.000 0.00 0.00 38.35 1.75
371 372 0.323302 TCACGCCTGCTTGGTTATCA 59.677 50.000 0.00 0.00 38.35 2.15
372 373 0.447801 CACGCCTGCTTGGTTATCAC 59.552 55.000 0.00 0.00 38.35 3.06
373 374 0.676782 ACGCCTGCTTGGTTATCACC 60.677 55.000 0.00 0.00 44.56 4.02
374 375 0.392998 CGCCTGCTTGGTTATCACCT 60.393 55.000 0.00 0.00 44.61 4.00
375 376 1.098050 GCCTGCTTGGTTATCACCTG 58.902 55.000 0.00 0.00 44.61 4.00
376 377 1.340017 GCCTGCTTGGTTATCACCTGA 60.340 52.381 0.00 0.00 44.61 3.86
377 378 2.684927 GCCTGCTTGGTTATCACCTGAT 60.685 50.000 0.00 0.00 44.61 2.90
378 379 3.624777 CCTGCTTGGTTATCACCTGATT 58.375 45.455 0.00 0.00 44.61 2.57
379 380 4.019174 CCTGCTTGGTTATCACCTGATTT 58.981 43.478 0.00 0.00 44.61 2.17
380 381 5.192927 CCTGCTTGGTTATCACCTGATTTA 58.807 41.667 0.00 0.00 44.61 1.40
381 382 5.829924 CCTGCTTGGTTATCACCTGATTTAT 59.170 40.000 0.00 0.00 44.61 1.40
382 383 6.998074 CCTGCTTGGTTATCACCTGATTTATA 59.002 38.462 0.00 0.00 44.61 0.98
383 384 7.502226 CCTGCTTGGTTATCACCTGATTTATAA 59.498 37.037 0.00 0.00 44.61 0.98
384 385 8.450578 TGCTTGGTTATCACCTGATTTATAAG 57.549 34.615 0.00 0.00 44.61 1.73
385 386 8.052748 TGCTTGGTTATCACCTGATTTATAAGT 58.947 33.333 0.00 0.00 44.61 2.24
386 387 8.560374 GCTTGGTTATCACCTGATTTATAAGTC 58.440 37.037 1.17 1.17 44.61 3.01
387 388 9.613428 CTTGGTTATCACCTGATTTATAAGTCA 57.387 33.333 9.97 9.97 44.61 3.41
388 389 8.958119 TGGTTATCACCTGATTTATAAGTCAC 57.042 34.615 6.58 0.00 44.61 3.67
389 390 8.544622 TGGTTATCACCTGATTTATAAGTCACA 58.455 33.333 6.58 0.00 44.61 3.58
390 391 9.561069 GGTTATCACCTGATTTATAAGTCACAT 57.439 33.333 6.58 0.00 40.44 3.21
393 394 8.899427 ATCACCTGATTTATAAGTCACATGAG 57.101 34.615 17.41 0.00 0.00 2.90
394 395 6.763135 TCACCTGATTTATAAGTCACATGAGC 59.237 38.462 6.58 0.00 0.00 4.26
395 396 6.539826 CACCTGATTTATAAGTCACATGAGCA 59.460 38.462 6.58 0.00 0.00 4.26
396 397 7.228108 CACCTGATTTATAAGTCACATGAGCAT 59.772 37.037 6.58 0.00 0.00 3.79
397 398 8.432013 ACCTGATTTATAAGTCACATGAGCATA 58.568 33.333 6.58 0.00 0.00 3.14
398 399 8.715998 CCTGATTTATAAGTCACATGAGCATAC 58.284 37.037 6.58 0.00 0.00 2.39
399 400 8.607441 TGATTTATAAGTCACATGAGCATACC 57.393 34.615 6.58 0.00 0.00 2.73
400 401 8.432013 TGATTTATAAGTCACATGAGCATACCT 58.568 33.333 6.58 0.00 0.00 3.08
401 402 9.277783 GATTTATAAGTCACATGAGCATACCTT 57.722 33.333 0.00 0.00 0.00 3.50
402 403 9.632638 ATTTATAAGTCACATGAGCATACCTTT 57.367 29.630 0.00 0.00 0.00 3.11
403 404 8.662781 TTATAAGTCACATGAGCATACCTTTC 57.337 34.615 0.00 0.00 0.00 2.62
404 405 4.833478 AGTCACATGAGCATACCTTTCT 57.167 40.909 0.00 0.00 0.00 2.52
405 406 5.939764 AGTCACATGAGCATACCTTTCTA 57.060 39.130 0.00 0.00 0.00 2.10
406 407 5.665459 AGTCACATGAGCATACCTTTCTAC 58.335 41.667 0.00 0.00 0.00 2.59
407 408 4.811557 GTCACATGAGCATACCTTTCTACC 59.188 45.833 0.00 0.00 0.00 3.18
408 409 4.716784 TCACATGAGCATACCTTTCTACCT 59.283 41.667 0.00 0.00 0.00 3.08
409 410 5.189736 TCACATGAGCATACCTTTCTACCTT 59.810 40.000 0.00 0.00 0.00 3.50
410 411 5.295292 CACATGAGCATACCTTTCTACCTTG 59.705 44.000 0.00 0.00 0.00 3.61
411 412 5.045578 ACATGAGCATACCTTTCTACCTTGT 60.046 40.000 0.00 0.00 0.00 3.16
412 413 5.499004 TGAGCATACCTTTCTACCTTGTT 57.501 39.130 0.00 0.00 0.00 2.83
413 414 5.876357 TGAGCATACCTTTCTACCTTGTTT 58.124 37.500 0.00 0.00 0.00 2.83
414 415 6.303839 TGAGCATACCTTTCTACCTTGTTTT 58.696 36.000 0.00 0.00 0.00 2.43
415 416 6.775629 TGAGCATACCTTTCTACCTTGTTTTT 59.224 34.615 0.00 0.00 0.00 1.94
437 438 7.696992 TTTTTATGTAAAGGTGATGAGACCC 57.303 36.000 0.00 0.00 36.56 4.46
438 439 6.381498 TTTATGTAAAGGTGATGAGACCCA 57.619 37.500 0.00 0.00 36.56 4.51
439 440 6.575244 TTATGTAAAGGTGATGAGACCCAT 57.425 37.500 0.00 0.00 36.56 4.00
440 441 4.220693 TGTAAAGGTGATGAGACCCATG 57.779 45.455 0.00 0.00 36.56 3.66
441 442 2.134789 AAAGGTGATGAGACCCATGC 57.865 50.000 0.00 0.00 36.56 4.06
442 443 0.994247 AAGGTGATGAGACCCATGCA 59.006 50.000 0.00 0.00 36.56 3.96
443 444 0.994247 AGGTGATGAGACCCATGCAA 59.006 50.000 0.00 0.00 36.56 4.08
444 445 1.355381 AGGTGATGAGACCCATGCAAA 59.645 47.619 0.00 0.00 36.56 3.68
445 446 2.170166 GGTGATGAGACCCATGCAAAA 58.830 47.619 0.00 0.00 35.17 2.44
446 447 2.165030 GGTGATGAGACCCATGCAAAAG 59.835 50.000 0.00 0.00 35.17 2.27
447 448 2.165030 GTGATGAGACCCATGCAAAAGG 59.835 50.000 0.00 0.00 35.17 3.11
462 463 7.961326 ATGCAAAAGGGATGACTTATAAGTT 57.039 32.000 18.96 4.55 39.88 2.66
463 464 7.775053 TGCAAAAGGGATGACTTATAAGTTT 57.225 32.000 18.96 10.17 39.88 2.66
464 465 8.189119 TGCAAAAGGGATGACTTATAAGTTTT 57.811 30.769 18.96 11.32 39.88 2.43
465 466 9.303116 TGCAAAAGGGATGACTTATAAGTTTTA 57.697 29.630 18.96 9.55 39.88 1.52
471 472 9.462606 AGGGATGACTTATAAGTTTTAAGTTGG 57.537 33.333 18.96 0.00 39.40 3.77
472 473 8.683615 GGGATGACTTATAAGTTTTAAGTTGGG 58.316 37.037 18.96 0.00 39.40 4.12
473 474 8.683615 GGATGACTTATAAGTTTTAAGTTGGGG 58.316 37.037 18.96 0.00 39.40 4.96
474 475 9.239551 GATGACTTATAAGTTTTAAGTTGGGGT 57.760 33.333 18.96 5.40 39.40 4.95
476 477 9.729281 TGACTTATAAGTTTTAAGTTGGGGTAG 57.271 33.333 18.96 0.00 39.40 3.18
477 478 9.948964 GACTTATAAGTTTTAAGTTGGGGTAGA 57.051 33.333 18.96 0.00 39.40 2.59
478 479 9.955102 ACTTATAAGTTTTAAGTTGGGGTAGAG 57.045 33.333 12.50 0.00 36.70 2.43
479 480 8.797350 TTATAAGTTTTAAGTTGGGGTAGAGC 57.203 34.615 0.00 0.00 0.00 4.09
480 481 4.717279 AGTTTTAAGTTGGGGTAGAGCA 57.283 40.909 0.00 0.00 0.00 4.26
481 482 5.056553 AGTTTTAAGTTGGGGTAGAGCAA 57.943 39.130 0.00 0.00 0.00 3.91
482 483 4.825634 AGTTTTAAGTTGGGGTAGAGCAAC 59.174 41.667 0.00 0.00 0.00 4.17
483 484 4.717279 TTTAAGTTGGGGTAGAGCAACT 57.283 40.909 0.00 0.00 39.27 3.16
484 485 4.717279 TTAAGTTGGGGTAGAGCAACTT 57.283 40.909 5.21 5.21 45.92 2.66
485 486 5.829062 TTAAGTTGGGGTAGAGCAACTTA 57.171 39.130 3.95 3.95 43.44 2.24
486 487 4.929146 AAGTTGGGGTAGAGCAACTTAT 57.071 40.909 0.32 0.00 43.44 1.73
487 488 4.222124 AGTTGGGGTAGAGCAACTTATG 57.778 45.455 0.00 0.00 34.63 1.90
488 489 3.844211 AGTTGGGGTAGAGCAACTTATGA 59.156 43.478 0.00 0.00 34.63 2.15
489 490 3.906720 TGGGGTAGAGCAACTTATGAC 57.093 47.619 0.00 0.00 0.00 3.06
490 491 3.450904 TGGGGTAGAGCAACTTATGACT 58.549 45.455 0.00 0.00 0.00 3.41
491 492 3.844211 TGGGGTAGAGCAACTTATGACTT 59.156 43.478 0.00 0.00 0.00 3.01
492 493 5.027460 TGGGGTAGAGCAACTTATGACTTA 58.973 41.667 0.00 0.00 0.00 2.24
493 494 5.665812 TGGGGTAGAGCAACTTATGACTTAT 59.334 40.000 0.00 0.00 0.00 1.73
494 495 6.842280 TGGGGTAGAGCAACTTATGACTTATA 59.158 38.462 0.00 0.00 0.00 0.98
495 496 7.346175 TGGGGTAGAGCAACTTATGACTTATAA 59.654 37.037 0.00 0.00 0.00 0.98
496 497 8.208903 GGGGTAGAGCAACTTATGACTTATAAA 58.791 37.037 0.00 0.00 31.12 1.40
497 498 9.780186 GGGTAGAGCAACTTATGACTTATAAAT 57.220 33.333 0.00 0.00 31.12 1.40
503 504 9.686683 AGCAACTTATGACTTATAAATTGAGGT 57.313 29.630 5.38 0.00 39.58 3.85
504 505 9.722056 GCAACTTATGACTTATAAATTGAGGTG 57.278 33.333 5.38 0.00 39.58 4.00
520 521 8.779354 AATTGAGGTGACTTATAAGTTGAGTC 57.221 34.615 18.96 13.62 44.43 3.36
521 522 5.950883 TGAGGTGACTTATAAGTTGAGTCG 58.049 41.667 18.96 0.00 44.43 4.18
522 523 5.105877 TGAGGTGACTTATAAGTTGAGTCGG 60.106 44.000 18.96 0.00 44.43 4.79
523 524 4.771054 AGGTGACTTATAAGTTGAGTCGGT 59.229 41.667 18.96 0.00 42.02 4.69
524 525 5.245526 AGGTGACTTATAAGTTGAGTCGGTT 59.754 40.000 18.96 0.00 42.02 4.44
525 526 5.930569 GGTGACTTATAAGTTGAGTCGGTTT 59.069 40.000 18.96 0.00 42.02 3.27
526 527 6.128634 GGTGACTTATAAGTTGAGTCGGTTTG 60.129 42.308 18.96 0.00 42.02 2.93
527 528 6.643770 GTGACTTATAAGTTGAGTCGGTTTGA 59.356 38.462 18.96 0.00 42.02 2.69
528 529 6.643770 TGACTTATAAGTTGAGTCGGTTTGAC 59.356 38.462 18.96 2.46 43.06 3.18
529 530 6.518493 ACTTATAAGTTGAGTCGGTTTGACA 58.482 36.000 12.50 0.00 42.77 3.58
530 531 6.987992 ACTTATAAGTTGAGTCGGTTTGACAA 59.012 34.615 12.50 0.00 42.77 3.18
531 532 7.496591 ACTTATAAGTTGAGTCGGTTTGACAAA 59.503 33.333 12.50 0.00 42.77 2.83
542 543 6.687081 TCGGTTTGACAAAATAAGTCACTT 57.313 33.333 1.27 0.00 44.95 3.16
543 544 7.090953 TCGGTTTGACAAAATAAGTCACTTT 57.909 32.000 1.27 0.00 44.95 2.66
544 545 7.540299 TCGGTTTGACAAAATAAGTCACTTTT 58.460 30.769 1.27 0.00 44.95 2.27
545 546 8.030106 TCGGTTTGACAAAATAAGTCACTTTTT 58.970 29.630 1.27 0.00 44.95 1.94
546 547 9.291664 CGGTTTGACAAAATAAGTCACTTTTTA 57.708 29.630 1.27 0.00 44.95 1.52
591 592 9.757227 TTGATGACTTATTTAAAACCAAACAGG 57.243 29.630 0.00 0.00 45.67 4.00
592 593 8.364142 TGATGACTTATTTAAAACCAAACAGGG 58.636 33.333 0.00 0.00 43.89 4.45
593 594 6.517605 TGACTTATTTAAAACCAAACAGGGC 58.482 36.000 0.00 0.00 43.89 5.19
594 595 5.860611 ACTTATTTAAAACCAAACAGGGCC 58.139 37.500 0.00 0.00 43.89 5.80
595 596 5.605069 ACTTATTTAAAACCAAACAGGGCCT 59.395 36.000 0.00 0.00 43.89 5.19
596 597 6.783482 ACTTATTTAAAACCAAACAGGGCCTA 59.217 34.615 5.28 0.00 43.89 3.93
597 598 7.290481 ACTTATTTAAAACCAAACAGGGCCTAA 59.710 33.333 5.28 0.00 43.89 2.69
598 599 4.940905 TTAAAACCAAACAGGGCCTAAC 57.059 40.909 5.28 0.00 43.89 2.34
599 600 1.712056 AAACCAAACAGGGCCTAACC 58.288 50.000 5.28 0.00 43.89 2.85
604 605 1.472480 CAAACAGGGCCTAACCGATTG 59.528 52.381 5.28 1.01 40.62 2.67
674 676 1.499502 GAGCAGAACAAGGAAGCGC 59.500 57.895 0.00 0.00 0.00 5.92
867 869 0.036010 AAGCAGGAATCACGGACCAG 60.036 55.000 0.00 0.00 0.00 4.00
893 895 2.535224 CCCCCGCCCATAGAAACTA 58.465 57.895 0.00 0.00 0.00 2.24
928 930 1.142748 CTCATCTGACCACCTCGCC 59.857 63.158 0.00 0.00 0.00 5.54
1005 1007 2.121538 GCTTCGAAAGGGGATGGGC 61.122 63.158 0.00 0.00 0.00 5.36
1094 1096 2.443952 ATCTCCCATCGCCGGTGA 60.444 61.111 22.04 22.04 0.00 4.02
1095 1097 1.821061 GATCTCCCATCGCCGGTGAT 61.821 60.000 24.82 24.82 36.54 3.06
1221 1224 5.280113 CCCCTTGTTTCAATCACCATGATTT 60.280 40.000 1.25 0.00 44.03 2.17
1288 1293 0.042100 GCTAAGATAAAGCGCCGTGC 60.042 55.000 2.29 0.00 46.98 5.34
1347 1352 3.834813 AGGTGAGTTTACTGCTGATCTCA 59.165 43.478 0.00 3.19 0.00 3.27
1364 1369 7.042389 GCTGATCTCAAGTAGTTTAATACTGCC 60.042 40.741 0.00 0.00 40.02 4.85
1385 1390 4.033587 GCCAGTGCTAAATTGCAAATCATG 59.966 41.667 1.71 0.00 45.12 3.07
1390 1395 6.070881 AGTGCTAAATTGCAAATCATGGGTTA 60.071 34.615 1.71 0.00 45.12 2.85
1498 1505 5.763204 TGGGATAAGTGTGAAACTGAACTTC 59.237 40.000 0.00 0.00 39.81 3.01
1537 1550 5.375417 TGCTCTGTGTTTTATTCCACATG 57.625 39.130 0.00 0.00 40.53 3.21
1558 1571 8.171196 CACATGCTCTGTAGTTTATTGTTACAG 58.829 37.037 0.00 4.87 43.46 2.74
1630 1643 5.708230 ACTGATAAAGACGTTTATTTGGGCA 59.292 36.000 0.00 0.00 38.70 5.36
1640 1653 4.614946 GTTTATTTGGGCAGCATCTGATC 58.385 43.478 0.00 0.00 32.44 2.92
1643 1656 1.573607 TTGGGCAGCATCTGATCCCA 61.574 55.000 10.03 10.03 40.36 4.37
1644 1657 1.358051 TGGGCAGCATCTGATCCCAT 61.358 55.000 10.03 0.00 38.33 4.00
1645 1658 0.894184 GGGCAGCATCTGATCCCATG 60.894 60.000 7.15 0.00 35.02 3.66
1646 1659 0.178998 GGCAGCATCTGATCCCATGT 60.179 55.000 0.00 0.00 32.44 3.21
1647 1660 1.688772 GCAGCATCTGATCCCATGTT 58.311 50.000 0.00 0.00 32.44 2.71
1648 1661 2.029623 GCAGCATCTGATCCCATGTTT 58.970 47.619 0.00 0.00 32.44 2.83
1649 1662 2.429610 GCAGCATCTGATCCCATGTTTT 59.570 45.455 0.00 0.00 32.44 2.43
1650 1663 3.490419 GCAGCATCTGATCCCATGTTTTC 60.490 47.826 0.00 0.00 32.44 2.29
1651 1664 3.067742 CAGCATCTGATCCCATGTTTTCC 59.932 47.826 0.00 0.00 32.44 3.13
1652 1665 3.053095 AGCATCTGATCCCATGTTTTCCT 60.053 43.478 0.00 0.00 0.00 3.36
1653 1666 3.703052 GCATCTGATCCCATGTTTTCCTT 59.297 43.478 0.00 0.00 0.00 3.36
1654 1667 4.441079 GCATCTGATCCCATGTTTTCCTTG 60.441 45.833 0.00 0.00 0.00 3.61
1655 1668 3.091545 TCTGATCCCATGTTTTCCTTGC 58.908 45.455 0.00 0.00 0.00 4.01
1656 1669 1.818060 TGATCCCATGTTTTCCTTGCG 59.182 47.619 0.00 0.00 0.00 4.85
1657 1670 2.091541 GATCCCATGTTTTCCTTGCGA 58.908 47.619 0.00 0.00 0.00 5.10
1658 1671 1.243902 TCCCATGTTTTCCTTGCGAC 58.756 50.000 0.00 0.00 0.00 5.19
1659 1672 1.202879 TCCCATGTTTTCCTTGCGACT 60.203 47.619 0.00 0.00 0.00 4.18
1660 1673 2.039216 TCCCATGTTTTCCTTGCGACTA 59.961 45.455 0.00 0.00 0.00 2.59
1661 1674 2.817258 CCCATGTTTTCCTTGCGACTAA 59.183 45.455 0.00 0.00 0.00 2.24
1662 1675 3.254657 CCCATGTTTTCCTTGCGACTAAA 59.745 43.478 0.00 0.00 0.00 1.85
1663 1676 4.475944 CCATGTTTTCCTTGCGACTAAAG 58.524 43.478 0.00 0.00 0.00 1.85
1664 1677 4.215399 CCATGTTTTCCTTGCGACTAAAGA 59.785 41.667 0.00 0.00 0.00 2.52
1665 1678 5.106157 CCATGTTTTCCTTGCGACTAAAGAT 60.106 40.000 0.00 0.00 0.00 2.40
1666 1679 6.381801 CATGTTTTCCTTGCGACTAAAGATT 58.618 36.000 0.00 0.00 0.00 2.40
1667 1680 7.361713 CCATGTTTTCCTTGCGACTAAAGATTA 60.362 37.037 0.00 0.00 0.00 1.75
1668 1681 7.681939 TGTTTTCCTTGCGACTAAAGATTAT 57.318 32.000 0.00 0.00 0.00 1.28
1669 1682 7.526608 TGTTTTCCTTGCGACTAAAGATTATG 58.473 34.615 0.00 0.00 0.00 1.90
1670 1683 7.174253 TGTTTTCCTTGCGACTAAAGATTATGT 59.826 33.333 0.00 0.00 0.00 2.29
1671 1684 7.681939 TTTCCTTGCGACTAAAGATTATGTT 57.318 32.000 0.00 0.00 0.00 2.71
1672 1685 7.681939 TTCCTTGCGACTAAAGATTATGTTT 57.318 32.000 0.00 0.00 0.00 2.83
1673 1686 7.681939 TCCTTGCGACTAAAGATTATGTTTT 57.318 32.000 0.00 0.00 0.00 2.43
1674 1687 7.748847 TCCTTGCGACTAAAGATTATGTTTTC 58.251 34.615 0.00 0.00 0.00 2.29
1675 1688 6.967199 CCTTGCGACTAAAGATTATGTTTTCC 59.033 38.462 0.00 0.00 0.00 3.13
1676 1689 7.148239 CCTTGCGACTAAAGATTATGTTTTCCT 60.148 37.037 0.00 0.00 0.00 3.36
1677 1690 7.681939 TGCGACTAAAGATTATGTTTTCCTT 57.318 32.000 0.00 0.00 0.00 3.36
1678 1691 7.526608 TGCGACTAAAGATTATGTTTTCCTTG 58.473 34.615 0.00 0.00 0.00 3.61
1679 1692 6.469275 GCGACTAAAGATTATGTTTTCCTTGC 59.531 38.462 0.00 0.00 0.00 4.01
1680 1693 6.682863 CGACTAAAGATTATGTTTTCCTTGCG 59.317 38.462 0.00 0.00 0.00 4.85
1681 1694 7.412563 CGACTAAAGATTATGTTTTCCTTGCGA 60.413 37.037 0.00 0.00 0.00 5.10
1682 1695 7.527457 ACTAAAGATTATGTTTTCCTTGCGAC 58.473 34.615 0.00 0.00 0.00 5.19
1683 1696 6.575162 AAAGATTATGTTTTCCTTGCGACT 57.425 33.333 0.00 0.00 0.00 4.18
1684 1697 7.681939 AAAGATTATGTTTTCCTTGCGACTA 57.318 32.000 0.00 0.00 0.00 2.59
1685 1698 7.681939 AAGATTATGTTTTCCTTGCGACTAA 57.318 32.000 0.00 0.00 0.00 2.24
1686 1699 7.681939 AGATTATGTTTTCCTTGCGACTAAA 57.318 32.000 0.00 0.00 0.00 1.85
1687 1700 7.752695 AGATTATGTTTTCCTTGCGACTAAAG 58.247 34.615 0.00 0.00 0.00 1.85
1688 1701 7.606456 AGATTATGTTTTCCTTGCGACTAAAGA 59.394 33.333 0.00 0.00 0.00 2.52
1689 1702 7.681939 TTATGTTTTCCTTGCGACTAAAGAT 57.318 32.000 0.00 0.00 0.00 2.40
1690 1703 6.575162 ATGTTTTCCTTGCGACTAAAGATT 57.425 33.333 0.00 0.00 0.00 2.40
1736 1752 5.375417 TGTGGTGATGCAAGAACATTTAG 57.625 39.130 0.00 0.00 0.00 1.85
1738 1754 4.081406 TGGTGATGCAAGAACATTTAGCT 58.919 39.130 0.00 0.00 0.00 3.32
1877 1893 9.908152 AAGTTTTTATGCTTTACAGATTACCAC 57.092 29.630 0.00 0.00 0.00 4.16
1885 1901 6.183360 TGCTTTACAGATTACCACAATAAGCG 60.183 38.462 0.00 0.00 37.63 4.68
1924 1940 8.316946 TCTCAAGGTATATGGCATCTATCTTTG 58.683 37.037 13.88 10.69 0.00 2.77
2033 2050 2.947652 CAGAATATTCAGGTGGGCACTG 59.052 50.000 17.56 0.00 37.30 3.66
2148 2280 7.462571 TCTTCTGAACACTGCACTACTAATA 57.537 36.000 0.00 0.00 0.00 0.98
2149 2281 8.067751 TCTTCTGAACACTGCACTACTAATAT 57.932 34.615 0.00 0.00 0.00 1.28
2155 2287 9.313118 TGAACACTGCACTACTAATATTACATG 57.687 33.333 0.00 0.00 0.00 3.21
2177 2310 6.500684 TGCTCTCAATTGATAAGTTGAACC 57.499 37.500 8.96 0.00 34.26 3.62
2290 2423 2.441750 ACCCTTTCTAACCTTCACAGCA 59.558 45.455 0.00 0.00 0.00 4.41
2320 2453 1.669211 GGTGCGAGTCAGTAGACCAAC 60.669 57.143 0.00 0.00 46.15 3.77
2331 2464 2.162681 GTAGACCAACTGCCAATGCTT 58.837 47.619 0.00 0.00 38.71 3.91
2498 2631 2.563013 TAGGGCCGAAGAGCTACCGT 62.563 60.000 0.00 0.00 0.00 4.83
2696 2829 5.307456 ACAGGTCGGTGACTATAGATAGAGA 59.693 44.000 6.78 0.00 34.50 3.10
2697 2830 5.872617 CAGGTCGGTGACTATAGATAGAGAG 59.127 48.000 6.78 0.00 34.50 3.20
2725 2858 2.677003 GGTCGGTTGTGTGCATCGG 61.677 63.158 0.00 0.00 0.00 4.18
2766 2899 5.291371 GGCGCTACCTTAGTTTTCTTCTAAG 59.709 44.000 7.64 0.00 42.05 2.18
2808 2941 4.582869 TGACTTGAGATCATGGTTCTTGG 58.417 43.478 0.00 0.00 0.00 3.61
2817 2950 6.131264 AGATCATGGTTCTTGGATTTGCATA 58.869 36.000 0.00 0.00 0.00 3.14
2818 2951 6.781014 AGATCATGGTTCTTGGATTTGCATAT 59.219 34.615 0.00 0.00 0.00 1.78
2819 2952 6.151663 TCATGGTTCTTGGATTTGCATATG 57.848 37.500 0.00 0.00 0.00 1.78
2820 2953 5.657745 TCATGGTTCTTGGATTTGCATATGT 59.342 36.000 4.29 0.00 0.00 2.29
2861 2994 7.281991 GCAATAGTAGGTTTTGCATTTTCTG 57.718 36.000 2.25 0.00 43.95 3.02
2884 3017 4.220602 GTGTCTGGCATAATTTTCTTGGGT 59.779 41.667 0.00 0.00 0.00 4.51
2942 3075 1.894466 ACATAAACAGCCAGCATGCAA 59.106 42.857 21.98 0.00 31.97 4.08
3203 3440 1.443802 GCTCCACTAGCCTGTGTTTC 58.556 55.000 6.05 0.00 46.25 2.78
3299 3536 3.123273 AGGGCGGGGAATAGCATAATAT 58.877 45.455 0.00 0.00 34.54 1.28
3300 3537 4.303794 AGGGCGGGGAATAGCATAATATA 58.696 43.478 0.00 0.00 34.54 0.86
3306 3543 6.516718 CGGGGAATAGCATAATATACTCCAG 58.483 44.000 0.00 0.00 0.00 3.86
3443 3685 2.231964 CCCACCATGTGTTGAATGGAAG 59.768 50.000 9.36 1.94 46.44 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.063074 CGGTCTTTCTTAGCTTCTCGATAAAAA 59.937 37.037 0.00 0.00 0.00 1.94
42 43 6.530534 CGGTCTTTCTTAGCTTCTCGATAAAA 59.469 38.462 0.00 0.00 0.00 1.52
43 44 6.034591 CGGTCTTTCTTAGCTTCTCGATAAA 58.965 40.000 0.00 0.00 0.00 1.40
44 45 5.450137 CCGGTCTTTCTTAGCTTCTCGATAA 60.450 44.000 0.00 0.00 0.00 1.75
45 46 4.036498 CCGGTCTTTCTTAGCTTCTCGATA 59.964 45.833 0.00 0.00 0.00 2.92
46 47 3.181485 CCGGTCTTTCTTAGCTTCTCGAT 60.181 47.826 0.00 0.00 0.00 3.59
47 48 2.163815 CCGGTCTTTCTTAGCTTCTCGA 59.836 50.000 0.00 0.00 0.00 4.04
48 49 2.531206 CCGGTCTTTCTTAGCTTCTCG 58.469 52.381 0.00 0.00 0.00 4.04
49 50 2.496470 TCCCGGTCTTTCTTAGCTTCTC 59.504 50.000 0.00 0.00 0.00 2.87
50 51 2.498078 CTCCCGGTCTTTCTTAGCTTCT 59.502 50.000 0.00 0.00 0.00 2.85
51 52 2.496470 TCTCCCGGTCTTTCTTAGCTTC 59.504 50.000 0.00 0.00 0.00 3.86
52 53 2.537143 TCTCCCGGTCTTTCTTAGCTT 58.463 47.619 0.00 0.00 0.00 3.74
53 54 2.233305 TCTCCCGGTCTTTCTTAGCT 57.767 50.000 0.00 0.00 0.00 3.32
54 55 3.329929 TTTCTCCCGGTCTTTCTTAGC 57.670 47.619 0.00 0.00 0.00 3.09
55 56 4.001652 GGTTTTCTCCCGGTCTTTCTTAG 58.998 47.826 0.00 0.00 0.00 2.18
56 57 3.391955 TGGTTTTCTCCCGGTCTTTCTTA 59.608 43.478 0.00 0.00 0.00 2.10
57 58 2.173996 TGGTTTTCTCCCGGTCTTTCTT 59.826 45.455 0.00 0.00 0.00 2.52
58 59 1.772453 TGGTTTTCTCCCGGTCTTTCT 59.228 47.619 0.00 0.00 0.00 2.52
59 60 2.265589 TGGTTTTCTCCCGGTCTTTC 57.734 50.000 0.00 0.00 0.00 2.62
60 61 2.740506 TTGGTTTTCTCCCGGTCTTT 57.259 45.000 0.00 0.00 0.00 2.52
61 62 2.691526 GTTTTGGTTTTCTCCCGGTCTT 59.308 45.455 0.00 0.00 0.00 3.01
62 63 2.304092 GTTTTGGTTTTCTCCCGGTCT 58.696 47.619 0.00 0.00 0.00 3.85
63 64 1.002142 CGTTTTGGTTTTCTCCCGGTC 60.002 52.381 0.00 0.00 0.00 4.79
64 65 1.026584 CGTTTTGGTTTTCTCCCGGT 58.973 50.000 0.00 0.00 0.00 5.28
65 66 1.002142 GACGTTTTGGTTTTCTCCCGG 60.002 52.381 0.00 0.00 0.00 5.73
66 67 1.671845 TGACGTTTTGGTTTTCTCCCG 59.328 47.619 0.00 0.00 0.00 5.14
67 68 3.786516 TTGACGTTTTGGTTTTCTCCC 57.213 42.857 0.00 0.00 0.00 4.30
107 108 2.531103 ACGCGTTTTCGGCTTTTTAAAC 59.469 40.909 5.58 0.00 44.29 2.01
108 109 2.530700 CACGCGTTTTCGGCTTTTTAAA 59.469 40.909 10.22 0.00 44.29 1.52
109 110 2.110226 CACGCGTTTTCGGCTTTTTAA 58.890 42.857 10.22 0.00 44.29 1.52
110 111 1.744374 CACGCGTTTTCGGCTTTTTA 58.256 45.000 10.22 0.00 44.29 1.52
111 112 1.476235 GCACGCGTTTTCGGCTTTTT 61.476 50.000 10.22 0.00 44.29 1.94
112 113 1.942223 GCACGCGTTTTCGGCTTTT 60.942 52.632 10.22 0.00 44.29 2.27
113 114 2.353030 GCACGCGTTTTCGGCTTT 60.353 55.556 10.22 0.00 44.29 3.51
114 115 4.659874 CGCACGCGTTTTCGGCTT 62.660 61.111 10.22 0.00 44.29 4.35
116 117 4.653252 TTCGCACGCGTTTTCGGC 62.653 61.111 10.22 9.05 44.29 5.54
117 118 1.194896 TTTTTCGCACGCGTTTTCGG 61.195 50.000 10.22 0.00 44.29 4.30
135 136 2.962421 TGGACGCTCCCTTTGAATTTTT 59.038 40.909 2.23 0.00 35.03 1.94
136 137 2.558359 CTGGACGCTCCCTTTGAATTTT 59.442 45.455 2.23 0.00 35.03 1.82
137 138 2.162681 CTGGACGCTCCCTTTGAATTT 58.837 47.619 2.23 0.00 35.03 1.82
138 139 1.351017 TCTGGACGCTCCCTTTGAATT 59.649 47.619 2.23 0.00 35.03 2.17
139 140 0.984230 TCTGGACGCTCCCTTTGAAT 59.016 50.000 2.23 0.00 35.03 2.57
140 141 0.321671 CTCTGGACGCTCCCTTTGAA 59.678 55.000 2.23 0.00 35.03 2.69
141 142 1.975327 CTCTGGACGCTCCCTTTGA 59.025 57.895 2.23 0.00 35.03 2.69
142 143 1.743252 GCTCTGGACGCTCCCTTTG 60.743 63.158 2.23 0.00 35.03 2.77
143 144 2.665603 GCTCTGGACGCTCCCTTT 59.334 61.111 2.23 0.00 35.03 3.11
144 145 3.764466 CGCTCTGGACGCTCCCTT 61.764 66.667 2.23 0.00 35.03 3.95
152 153 4.702081 ACGTGTCGCGCTCTGGAC 62.702 66.667 5.56 5.97 46.11 4.02
153 154 4.700365 CACGTGTCGCGCTCTGGA 62.700 66.667 7.58 0.00 46.11 3.86
161 162 3.109547 TCATTCGCCACGTGTCGC 61.110 61.111 15.09 10.47 0.00 5.19
162 163 1.733041 AGTCATTCGCCACGTGTCG 60.733 57.895 13.61 13.61 0.00 4.35
163 164 0.666274 TCAGTCATTCGCCACGTGTC 60.666 55.000 15.65 0.00 0.00 3.67
164 165 0.667487 CTCAGTCATTCGCCACGTGT 60.667 55.000 15.65 0.00 0.00 4.49
165 166 0.388520 TCTCAGTCATTCGCCACGTG 60.389 55.000 9.08 9.08 0.00 4.49
166 167 0.109086 CTCTCAGTCATTCGCCACGT 60.109 55.000 0.00 0.00 0.00 4.49
167 168 1.416813 GCTCTCAGTCATTCGCCACG 61.417 60.000 0.00 0.00 0.00 4.94
168 169 1.416813 CGCTCTCAGTCATTCGCCAC 61.417 60.000 0.00 0.00 0.00 5.01
169 170 1.153765 CGCTCTCAGTCATTCGCCA 60.154 57.895 0.00 0.00 0.00 5.69
170 171 1.153745 ACGCTCTCAGTCATTCGCC 60.154 57.895 0.00 0.00 0.00 5.54
171 172 1.994467 CACGCTCTCAGTCATTCGC 59.006 57.895 0.00 0.00 0.00 4.70
172 173 1.416813 GGCACGCTCTCAGTCATTCG 61.417 60.000 0.00 0.00 0.00 3.34
173 174 0.390340 TGGCACGCTCTCAGTCATTC 60.390 55.000 0.00 0.00 0.00 2.67
174 175 0.035317 TTGGCACGCTCTCAGTCATT 59.965 50.000 0.00 0.00 0.00 2.57
175 176 0.390866 CTTGGCACGCTCTCAGTCAT 60.391 55.000 0.00 0.00 0.00 3.06
176 177 1.005748 CTTGGCACGCTCTCAGTCA 60.006 57.895 0.00 0.00 0.00 3.41
177 178 1.005630 ACTTGGCACGCTCTCAGTC 60.006 57.895 0.00 0.00 0.00 3.51
178 179 1.301244 CACTTGGCACGCTCTCAGT 60.301 57.895 0.00 0.00 0.00 3.41
179 180 2.031516 CCACTTGGCACGCTCTCAG 61.032 63.158 0.00 0.00 0.00 3.35
180 181 2.031012 CCACTTGGCACGCTCTCA 59.969 61.111 0.00 0.00 0.00 3.27
190 191 2.034879 AACGATCAGCGCCACTTGG 61.035 57.895 2.29 0.00 46.04 3.61
191 192 1.133253 CAACGATCAGCGCCACTTG 59.867 57.895 2.29 0.00 46.04 3.16
192 193 2.680913 GCAACGATCAGCGCCACTT 61.681 57.895 2.29 0.00 46.04 3.16
193 194 3.121030 GCAACGATCAGCGCCACT 61.121 61.111 2.29 0.00 46.04 4.00
199 200 2.510238 AGCCTCGCAACGATCAGC 60.510 61.111 0.00 0.00 34.61 4.26
200 201 2.806856 GCAGCCTCGCAACGATCAG 61.807 63.158 0.00 0.00 34.61 2.90
201 202 2.815211 GCAGCCTCGCAACGATCA 60.815 61.111 0.00 0.00 34.61 2.92
202 203 3.567797 GGCAGCCTCGCAACGATC 61.568 66.667 3.29 0.00 34.61 3.69
206 207 3.793144 CTTCGGCAGCCTCGCAAC 61.793 66.667 10.54 0.00 0.00 4.17
207 208 3.529341 TTCTTCGGCAGCCTCGCAA 62.529 57.895 10.54 0.00 0.00 4.85
208 209 3.939837 CTTCTTCGGCAGCCTCGCA 62.940 63.158 10.54 0.00 0.00 5.10
209 210 3.191539 CTTCTTCGGCAGCCTCGC 61.192 66.667 10.54 0.00 0.00 5.03
210 211 3.191539 GCTTCTTCGGCAGCCTCG 61.192 66.667 10.54 0.00 0.00 4.63
211 212 3.191539 CGCTTCTTCGGCAGCCTC 61.192 66.667 10.54 0.00 31.82 4.70
214 215 3.858989 GAGCGCTTCTTCGGCAGC 61.859 66.667 13.26 0.00 0.00 5.25
215 216 3.549150 CGAGCGCTTCTTCGGCAG 61.549 66.667 13.26 0.00 0.00 4.85
216 217 2.480853 TAACGAGCGCTTCTTCGGCA 62.481 55.000 13.26 0.00 0.00 5.69
217 218 1.349259 TTAACGAGCGCTTCTTCGGC 61.349 55.000 13.26 0.00 0.00 5.54
218 219 0.365859 GTTAACGAGCGCTTCTTCGG 59.634 55.000 13.26 0.00 0.00 4.30
219 220 1.337821 AGTTAACGAGCGCTTCTTCG 58.662 50.000 13.26 13.91 0.00 3.79
220 221 3.500014 ACTAGTTAACGAGCGCTTCTTC 58.500 45.455 13.26 0.00 0.00 2.87
221 222 3.572604 ACTAGTTAACGAGCGCTTCTT 57.427 42.857 13.26 8.66 0.00 2.52
222 223 3.243336 CAACTAGTTAACGAGCGCTTCT 58.757 45.455 13.26 1.05 0.00 2.85
223 224 2.222530 GCAACTAGTTAACGAGCGCTTC 60.223 50.000 13.26 3.81 0.00 3.86
224 225 1.725164 GCAACTAGTTAACGAGCGCTT 59.275 47.619 13.26 0.00 0.00 4.68
225 226 1.347320 GCAACTAGTTAACGAGCGCT 58.653 50.000 11.27 11.27 0.00 5.92
226 227 0.369248 GGCAACTAGTTAACGAGCGC 59.631 55.000 14.82 16.18 0.00 5.92
227 228 0.997196 GGGCAACTAGTTAACGAGCG 59.003 55.000 14.82 8.20 0.00 5.03
228 229 1.366679 GGGGCAACTAGTTAACGAGC 58.633 55.000 14.82 7.06 0.00 5.03
229 230 2.019948 GGGGGCAACTAGTTAACGAG 57.980 55.000 13.50 13.50 0.00 4.18
245 246 2.987125 CCTGGTACGTTCAGGGGG 59.013 66.667 22.53 5.66 45.95 5.40
249 250 2.536761 TTGGTTCCTGGTACGTTCAG 57.463 50.000 0.00 2.05 0.00 3.02
250 251 2.093075 TGTTTGGTTCCTGGTACGTTCA 60.093 45.455 0.00 0.00 0.00 3.18
251 252 2.288729 GTGTTTGGTTCCTGGTACGTTC 59.711 50.000 0.00 0.00 0.00 3.95
252 253 2.291365 GTGTTTGGTTCCTGGTACGTT 58.709 47.619 0.00 0.00 0.00 3.99
253 254 1.807377 CGTGTTTGGTTCCTGGTACGT 60.807 52.381 0.00 0.00 0.00 3.57
254 255 0.863144 CGTGTTTGGTTCCTGGTACG 59.137 55.000 0.00 0.00 0.00 3.67
255 256 0.589708 GCGTGTTTGGTTCCTGGTAC 59.410 55.000 0.00 0.00 0.00 3.34
256 257 0.535553 GGCGTGTTTGGTTCCTGGTA 60.536 55.000 0.00 0.00 0.00 3.25
257 258 1.826487 GGCGTGTTTGGTTCCTGGT 60.826 57.895 0.00 0.00 0.00 4.00
258 259 2.561037 GGGCGTGTTTGGTTCCTGG 61.561 63.158 0.00 0.00 0.00 4.45
259 260 1.106944 AAGGGCGTGTTTGGTTCCTG 61.107 55.000 0.00 0.00 0.00 3.86
260 261 0.475044 TAAGGGCGTGTTTGGTTCCT 59.525 50.000 0.00 0.00 0.00 3.36
261 262 1.320507 TTAAGGGCGTGTTTGGTTCC 58.679 50.000 0.00 0.00 0.00 3.62
262 263 4.380128 CCTTATTAAGGGCGTGTTTGGTTC 60.380 45.833 13.82 0.00 45.27 3.62
263 264 3.508402 CCTTATTAAGGGCGTGTTTGGTT 59.492 43.478 13.82 0.00 45.27 3.67
264 265 3.086282 CCTTATTAAGGGCGTGTTTGGT 58.914 45.455 13.82 0.00 45.27 3.67
265 266 3.775661 CCTTATTAAGGGCGTGTTTGG 57.224 47.619 13.82 0.00 45.27 3.28
276 277 5.935789 TCGAACCAAACAGACCCTTATTAAG 59.064 40.000 0.00 0.00 0.00 1.85
277 278 5.867330 TCGAACCAAACAGACCCTTATTAA 58.133 37.500 0.00 0.00 0.00 1.40
278 279 5.486735 TCGAACCAAACAGACCCTTATTA 57.513 39.130 0.00 0.00 0.00 0.98
279 280 4.360951 TCGAACCAAACAGACCCTTATT 57.639 40.909 0.00 0.00 0.00 1.40
280 281 4.360951 TTCGAACCAAACAGACCCTTAT 57.639 40.909 0.00 0.00 0.00 1.73
281 282 3.842007 TTCGAACCAAACAGACCCTTA 57.158 42.857 0.00 0.00 0.00 2.69
282 283 2.721425 TTCGAACCAAACAGACCCTT 57.279 45.000 0.00 0.00 0.00 3.95
283 284 2.951229 ATTCGAACCAAACAGACCCT 57.049 45.000 0.00 0.00 0.00 4.34
284 285 4.070009 ACTTATTCGAACCAAACAGACCC 58.930 43.478 0.00 0.00 0.00 4.46
285 286 4.753107 TGACTTATTCGAACCAAACAGACC 59.247 41.667 0.00 0.00 0.00 3.85
286 287 5.333875 GGTGACTTATTCGAACCAAACAGAC 60.334 44.000 0.00 0.00 0.00 3.51
287 288 4.753107 GGTGACTTATTCGAACCAAACAGA 59.247 41.667 0.00 0.00 0.00 3.41
288 289 4.755123 AGGTGACTTATTCGAACCAAACAG 59.245 41.667 0.00 0.00 37.44 3.16
289 290 4.513692 CAGGTGACTTATTCGAACCAAACA 59.486 41.667 0.00 0.00 40.21 2.83
290 291 4.753107 TCAGGTGACTTATTCGAACCAAAC 59.247 41.667 0.00 0.00 40.21 2.93
291 292 4.753107 GTCAGGTGACTTATTCGAACCAAA 59.247 41.667 0.00 0.00 41.65 3.28
292 293 4.312443 GTCAGGTGACTTATTCGAACCAA 58.688 43.478 0.00 0.00 41.65 3.67
293 294 3.921677 GTCAGGTGACTTATTCGAACCA 58.078 45.455 0.00 0.00 41.65 3.67
321 322 5.992217 AGTCACTGATTTTAAGTCACCTGAC 59.008 40.000 12.02 12.02 45.08 3.51
322 323 6.174720 AGTCACTGATTTTAAGTCACCTGA 57.825 37.500 0.00 0.00 0.00 3.86
323 324 6.867662 AAGTCACTGATTTTAAGTCACCTG 57.132 37.500 0.00 0.00 0.00 4.00
343 344 3.262420 CAAGCAGGCGTGACTTATAAGT 58.738 45.455 18.05 18.05 43.16 2.24
344 345 2.609459 CCAAGCAGGCGTGACTTATAAG 59.391 50.000 11.29 11.05 0.00 1.73
345 346 2.027561 ACCAAGCAGGCGTGACTTATAA 60.028 45.455 11.29 0.00 43.14 0.98
346 347 1.553248 ACCAAGCAGGCGTGACTTATA 59.447 47.619 11.29 0.00 43.14 0.98
347 348 0.324943 ACCAAGCAGGCGTGACTTAT 59.675 50.000 11.29 2.84 43.14 1.73
348 349 0.107831 AACCAAGCAGGCGTGACTTA 59.892 50.000 11.29 0.00 43.14 2.24
349 350 0.107831 TAACCAAGCAGGCGTGACTT 59.892 50.000 11.29 10.10 43.14 3.01
350 351 0.324943 ATAACCAAGCAGGCGTGACT 59.675 50.000 11.29 4.05 43.14 3.41
351 352 0.727398 GATAACCAAGCAGGCGTGAC 59.273 55.000 11.29 1.53 43.14 3.67
352 353 0.323302 TGATAACCAAGCAGGCGTGA 59.677 50.000 11.29 0.00 43.14 4.35
353 354 0.447801 GTGATAACCAAGCAGGCGTG 59.552 55.000 1.01 1.01 43.14 5.34
354 355 0.676782 GGTGATAACCAAGCAGGCGT 60.677 55.000 0.00 0.00 43.14 5.68
355 356 0.392998 AGGTGATAACCAAGCAGGCG 60.393 55.000 0.85 0.00 43.14 5.52
356 357 1.098050 CAGGTGATAACCAAGCAGGC 58.902 55.000 0.85 0.00 43.14 4.85
357 358 2.787473 TCAGGTGATAACCAAGCAGG 57.213 50.000 0.85 0.00 45.67 4.85
358 359 6.949352 ATAAATCAGGTGATAACCAAGCAG 57.051 37.500 0.85 0.00 33.73 4.24
359 360 8.052748 ACTTATAAATCAGGTGATAACCAAGCA 58.947 33.333 0.85 0.00 33.73 3.91
360 361 8.451908 ACTTATAAATCAGGTGATAACCAAGC 57.548 34.615 0.85 0.00 33.73 4.01
361 362 9.613428 TGACTTATAAATCAGGTGATAACCAAG 57.387 33.333 0.85 0.00 33.73 3.61
362 363 9.391006 GTGACTTATAAATCAGGTGATAACCAA 57.609 33.333 0.85 0.00 33.73 3.67
363 364 8.544622 TGTGACTTATAAATCAGGTGATAACCA 58.455 33.333 0.85 0.00 33.73 3.67
364 365 8.958119 TGTGACTTATAAATCAGGTGATAACC 57.042 34.615 0.00 0.00 33.73 2.85
367 368 9.987272 CTCATGTGACTTATAAATCAGGTGATA 57.013 33.333 10.03 0.00 33.73 2.15
368 369 7.443575 GCTCATGTGACTTATAAATCAGGTGAT 59.556 37.037 10.03 0.00 36.07 3.06
369 370 6.763135 GCTCATGTGACTTATAAATCAGGTGA 59.237 38.462 0.00 4.35 0.00 4.02
370 371 6.539826 TGCTCATGTGACTTATAAATCAGGTG 59.460 38.462 0.00 0.19 0.00 4.00
371 372 6.653020 TGCTCATGTGACTTATAAATCAGGT 58.347 36.000 0.00 0.00 0.00 4.00
372 373 7.741027 ATGCTCATGTGACTTATAAATCAGG 57.259 36.000 0.00 0.00 0.00 3.86
373 374 8.715998 GGTATGCTCATGTGACTTATAAATCAG 58.284 37.037 0.00 0.00 0.00 2.90
374 375 8.432013 AGGTATGCTCATGTGACTTATAAATCA 58.568 33.333 0.00 0.00 0.00 2.57
375 376 8.839310 AGGTATGCTCATGTGACTTATAAATC 57.161 34.615 0.00 0.00 0.00 2.17
376 377 9.632638 AAAGGTATGCTCATGTGACTTATAAAT 57.367 29.630 0.00 0.00 0.00 1.40
377 378 9.109393 GAAAGGTATGCTCATGTGACTTATAAA 57.891 33.333 0.00 0.00 0.00 1.40
378 379 8.486210 AGAAAGGTATGCTCATGTGACTTATAA 58.514 33.333 0.00 0.00 0.00 0.98
379 380 8.023021 AGAAAGGTATGCTCATGTGACTTATA 57.977 34.615 0.00 0.00 0.00 0.98
380 381 6.893583 AGAAAGGTATGCTCATGTGACTTAT 58.106 36.000 0.00 0.00 0.00 1.73
381 382 6.299805 AGAAAGGTATGCTCATGTGACTTA 57.700 37.500 0.00 0.00 0.00 2.24
382 383 5.171339 AGAAAGGTATGCTCATGTGACTT 57.829 39.130 0.00 0.00 0.00 3.01
383 384 4.833478 AGAAAGGTATGCTCATGTGACT 57.167 40.909 0.00 0.00 0.00 3.41
384 385 4.811557 GGTAGAAAGGTATGCTCATGTGAC 59.188 45.833 0.00 0.00 0.00 3.67
385 386 4.716784 AGGTAGAAAGGTATGCTCATGTGA 59.283 41.667 0.00 0.00 0.00 3.58
386 387 5.028549 AGGTAGAAAGGTATGCTCATGTG 57.971 43.478 0.00 0.00 0.00 3.21
387 388 5.045578 ACAAGGTAGAAAGGTATGCTCATGT 60.046 40.000 0.00 0.00 0.00 3.21
388 389 5.431765 ACAAGGTAGAAAGGTATGCTCATG 58.568 41.667 0.00 0.00 0.00 3.07
389 390 5.700402 ACAAGGTAGAAAGGTATGCTCAT 57.300 39.130 0.00 0.00 0.00 2.90
390 391 5.499004 AACAAGGTAGAAAGGTATGCTCA 57.501 39.130 0.00 0.00 0.00 4.26
391 392 6.819397 AAAACAAGGTAGAAAGGTATGCTC 57.181 37.500 0.00 0.00 0.00 4.26
413 414 7.235079 TGGGTCTCATCACCTTTACATAAAAA 58.765 34.615 0.00 0.00 36.57 1.94
414 415 6.785076 TGGGTCTCATCACCTTTACATAAAA 58.215 36.000 0.00 0.00 36.57 1.52
415 416 6.381498 TGGGTCTCATCACCTTTACATAAA 57.619 37.500 0.00 0.00 36.57 1.40
416 417 6.356556 CATGGGTCTCATCACCTTTACATAA 58.643 40.000 0.00 0.00 36.57 1.90
417 418 5.687441 GCATGGGTCTCATCACCTTTACATA 60.687 44.000 0.00 0.00 36.57 2.29
418 419 4.785301 CATGGGTCTCATCACCTTTACAT 58.215 43.478 0.00 0.00 36.57 2.29
419 420 3.622206 GCATGGGTCTCATCACCTTTACA 60.622 47.826 0.00 0.00 36.57 2.41
420 421 2.945668 GCATGGGTCTCATCACCTTTAC 59.054 50.000 0.00 0.00 36.57 2.01
421 422 2.575735 TGCATGGGTCTCATCACCTTTA 59.424 45.455 0.00 0.00 36.57 1.85
422 423 1.355381 TGCATGGGTCTCATCACCTTT 59.645 47.619 0.00 0.00 36.57 3.11
423 424 0.994247 TGCATGGGTCTCATCACCTT 59.006 50.000 0.00 0.00 36.57 3.50
424 425 0.994247 TTGCATGGGTCTCATCACCT 59.006 50.000 0.00 0.00 36.57 4.00
425 426 1.838112 TTTGCATGGGTCTCATCACC 58.162 50.000 0.00 0.00 32.92 4.02
426 427 2.165030 CCTTTTGCATGGGTCTCATCAC 59.835 50.000 0.00 0.00 32.92 3.06
427 428 2.449464 CCTTTTGCATGGGTCTCATCA 58.551 47.619 0.00 0.00 32.92 3.07
428 429 1.753073 CCCTTTTGCATGGGTCTCATC 59.247 52.381 10.72 0.00 38.65 2.92
429 430 1.358787 TCCCTTTTGCATGGGTCTCAT 59.641 47.619 16.39 0.00 43.74 2.90
430 431 0.776810 TCCCTTTTGCATGGGTCTCA 59.223 50.000 16.39 0.00 43.74 3.27
431 432 1.753073 CATCCCTTTTGCATGGGTCTC 59.247 52.381 16.39 0.00 43.74 3.36
432 433 1.358787 TCATCCCTTTTGCATGGGTCT 59.641 47.619 16.39 6.10 43.74 3.85
433 434 1.478105 GTCATCCCTTTTGCATGGGTC 59.522 52.381 16.39 5.96 43.74 4.46
434 435 1.077663 AGTCATCCCTTTTGCATGGGT 59.922 47.619 16.39 5.09 43.74 4.51
435 436 1.856629 AGTCATCCCTTTTGCATGGG 58.143 50.000 12.25 12.25 44.66 4.00
436 437 6.322201 ACTTATAAGTCATCCCTTTTGCATGG 59.678 38.462 12.50 0.00 32.86 3.66
437 438 7.338800 ACTTATAAGTCATCCCTTTTGCATG 57.661 36.000 12.50 0.00 32.86 4.06
438 439 7.961326 AACTTATAAGTCATCCCTTTTGCAT 57.039 32.000 18.28 0.00 38.57 3.96
439 440 7.775053 AAACTTATAAGTCATCCCTTTTGCA 57.225 32.000 18.28 0.00 38.57 4.08
445 446 9.462606 CCAACTTAAAACTTATAAGTCATCCCT 57.537 33.333 18.28 0.00 41.49 4.20
446 447 8.683615 CCCAACTTAAAACTTATAAGTCATCCC 58.316 37.037 18.28 0.00 41.49 3.85
447 448 8.683615 CCCCAACTTAAAACTTATAAGTCATCC 58.316 37.037 18.28 0.00 41.49 3.51
448 449 9.239551 ACCCCAACTTAAAACTTATAAGTCATC 57.760 33.333 18.28 0.00 41.49 2.92
450 451 9.729281 CTACCCCAACTTAAAACTTATAAGTCA 57.271 33.333 18.28 4.72 41.49 3.41
451 452 9.948964 TCTACCCCAACTTAAAACTTATAAGTC 57.051 33.333 18.28 0.00 41.49 3.01
452 453 9.955102 CTCTACCCCAACTTAAAACTTATAAGT 57.045 33.333 12.50 12.50 43.57 2.24
453 454 8.890718 GCTCTACCCCAACTTAAAACTTATAAG 58.109 37.037 11.05 11.05 36.62 1.73
454 455 8.384718 TGCTCTACCCCAACTTAAAACTTATAA 58.615 33.333 0.00 0.00 0.00 0.98
455 456 7.920227 TGCTCTACCCCAACTTAAAACTTATA 58.080 34.615 0.00 0.00 0.00 0.98
456 457 6.786122 TGCTCTACCCCAACTTAAAACTTAT 58.214 36.000 0.00 0.00 0.00 1.73
457 458 6.190346 TGCTCTACCCCAACTTAAAACTTA 57.810 37.500 0.00 0.00 0.00 2.24
458 459 5.056553 TGCTCTACCCCAACTTAAAACTT 57.943 39.130 0.00 0.00 0.00 2.66
459 460 4.717279 TGCTCTACCCCAACTTAAAACT 57.283 40.909 0.00 0.00 0.00 2.66
460 461 4.825634 AGTTGCTCTACCCCAACTTAAAAC 59.174 41.667 0.56 0.00 46.86 2.43
461 462 5.056553 AGTTGCTCTACCCCAACTTAAAA 57.943 39.130 0.56 0.00 46.86 1.52
462 463 4.717279 AGTTGCTCTACCCCAACTTAAA 57.283 40.909 0.56 0.00 46.86 1.52
467 468 3.939592 GTCATAAGTTGCTCTACCCCAAC 59.060 47.826 0.00 0.00 41.13 3.77
468 469 3.844211 AGTCATAAGTTGCTCTACCCCAA 59.156 43.478 0.00 0.00 0.00 4.12
469 470 3.450904 AGTCATAAGTTGCTCTACCCCA 58.549 45.455 0.00 0.00 0.00 4.96
470 471 4.489306 AAGTCATAAGTTGCTCTACCCC 57.511 45.455 0.00 0.00 0.00 4.95
471 472 9.780186 ATTTATAAGTCATAAGTTGCTCTACCC 57.220 33.333 0.00 0.00 30.75 3.69
477 478 9.686683 ACCTCAATTTATAAGTCATAAGTTGCT 57.313 29.630 7.14 0.00 42.36 3.91
478 479 9.722056 CACCTCAATTTATAAGTCATAAGTTGC 57.278 33.333 7.14 0.00 42.36 4.17
494 495 9.220767 GACTCAACTTATAAGTCACCTCAATTT 57.779 33.333 18.28 0.00 38.57 1.82
495 496 7.545965 CGACTCAACTTATAAGTCACCTCAATT 59.454 37.037 18.28 0.00 39.49 2.32
496 497 7.036220 CGACTCAACTTATAAGTCACCTCAAT 58.964 38.462 18.28 0.00 39.49 2.57
497 498 6.387465 CGACTCAACTTATAAGTCACCTCAA 58.613 40.000 18.28 0.00 39.49 3.02
498 499 5.105877 CCGACTCAACTTATAAGTCACCTCA 60.106 44.000 18.28 0.00 39.49 3.86
499 500 5.105837 ACCGACTCAACTTATAAGTCACCTC 60.106 44.000 18.28 9.99 39.49 3.85
500 501 4.771054 ACCGACTCAACTTATAAGTCACCT 59.229 41.667 18.28 0.05 39.49 4.00
501 502 5.069501 ACCGACTCAACTTATAAGTCACC 57.930 43.478 18.28 6.10 39.49 4.02
502 503 6.643770 TCAAACCGACTCAACTTATAAGTCAC 59.356 38.462 18.28 7.69 39.49 3.67
503 504 6.643770 GTCAAACCGACTCAACTTATAAGTCA 59.356 38.462 18.28 7.67 41.81 3.41
504 505 6.643770 TGTCAAACCGACTCAACTTATAAGTC 59.356 38.462 18.28 5.12 45.60 3.01
505 506 6.518493 TGTCAAACCGACTCAACTTATAAGT 58.482 36.000 12.50 12.50 45.60 2.24
506 507 7.416154 TTGTCAAACCGACTCAACTTATAAG 57.584 36.000 11.05 11.05 45.60 1.73
507 508 7.789273 TTTGTCAAACCGACTCAACTTATAA 57.211 32.000 0.00 0.00 45.60 0.98
508 509 7.789273 TTTTGTCAAACCGACTCAACTTATA 57.211 32.000 0.00 0.00 45.60 0.98
509 510 6.687081 TTTTGTCAAACCGACTCAACTTAT 57.313 33.333 0.00 0.00 45.60 1.73
510 511 6.687081 ATTTTGTCAAACCGACTCAACTTA 57.313 33.333 0.00 0.00 45.60 2.24
511 512 5.576447 ATTTTGTCAAACCGACTCAACTT 57.424 34.783 0.00 0.00 45.60 2.66
512 513 6.317893 ACTTATTTTGTCAAACCGACTCAACT 59.682 34.615 0.00 0.00 45.60 3.16
513 514 6.492254 ACTTATTTTGTCAAACCGACTCAAC 58.508 36.000 0.00 0.00 45.60 3.18
514 515 6.316640 TGACTTATTTTGTCAAACCGACTCAA 59.683 34.615 0.00 0.00 45.60 3.02
515 516 5.818336 TGACTTATTTTGTCAAACCGACTCA 59.182 36.000 0.00 0.00 45.60 3.41
516 517 6.018180 AGTGACTTATTTTGTCAAACCGACTC 60.018 38.462 0.00 0.00 44.63 3.36
517 518 5.820947 AGTGACTTATTTTGTCAAACCGACT 59.179 36.000 0.00 0.00 44.63 4.18
518 519 6.056428 AGTGACTTATTTTGTCAAACCGAC 57.944 37.500 0.00 0.00 44.63 4.79
519 520 6.687081 AAGTGACTTATTTTGTCAAACCGA 57.313 33.333 0.00 0.00 44.63 4.69
520 521 7.749539 AAAAGTGACTTATTTTGTCAAACCG 57.250 32.000 0.00 0.00 44.63 4.44
565 566 9.757227 CCTGTTTGGTTTTAAATAAGTCATCAA 57.243 29.630 0.00 0.00 0.00 2.57
566 567 8.364142 CCCTGTTTGGTTTTAAATAAGTCATCA 58.636 33.333 0.00 0.00 0.00 3.07
567 568 7.330946 GCCCTGTTTGGTTTTAAATAAGTCATC 59.669 37.037 0.00 0.00 0.00 2.92
568 569 7.158697 GCCCTGTTTGGTTTTAAATAAGTCAT 58.841 34.615 0.00 0.00 0.00 3.06
569 570 6.463190 GGCCCTGTTTGGTTTTAAATAAGTCA 60.463 38.462 0.00 0.00 0.00 3.41
570 571 5.929992 GGCCCTGTTTGGTTTTAAATAAGTC 59.070 40.000 0.00 0.00 0.00 3.01
571 572 5.605069 AGGCCCTGTTTGGTTTTAAATAAGT 59.395 36.000 0.00 0.00 0.00 2.24
572 573 6.109156 AGGCCCTGTTTGGTTTTAAATAAG 57.891 37.500 0.00 0.00 0.00 1.73
573 574 7.443477 GTTAGGCCCTGTTTGGTTTTAAATAA 58.557 34.615 0.00 0.00 0.00 1.40
574 575 6.014413 GGTTAGGCCCTGTTTGGTTTTAAATA 60.014 38.462 0.00 0.00 0.00 1.40
575 576 5.221762 GGTTAGGCCCTGTTTGGTTTTAAAT 60.222 40.000 0.00 0.00 0.00 1.40
576 577 4.101274 GGTTAGGCCCTGTTTGGTTTTAAA 59.899 41.667 0.00 0.00 0.00 1.52
577 578 3.642377 GGTTAGGCCCTGTTTGGTTTTAA 59.358 43.478 0.00 0.00 0.00 1.52
578 579 3.232662 GGTTAGGCCCTGTTTGGTTTTA 58.767 45.455 0.00 0.00 0.00 1.52
579 580 2.043992 GGTTAGGCCCTGTTTGGTTTT 58.956 47.619 0.00 0.00 0.00 2.43
580 581 1.712056 GGTTAGGCCCTGTTTGGTTT 58.288 50.000 0.00 0.00 0.00 3.27
581 582 0.538746 CGGTTAGGCCCTGTTTGGTT 60.539 55.000 0.00 0.00 0.00 3.67
582 583 1.074248 CGGTTAGGCCCTGTTTGGT 59.926 57.895 0.00 0.00 0.00 3.67
583 584 0.034477 ATCGGTTAGGCCCTGTTTGG 60.034 55.000 0.00 0.00 0.00 3.28
584 585 1.472480 CAATCGGTTAGGCCCTGTTTG 59.528 52.381 0.00 0.00 0.00 2.93
585 586 1.353022 TCAATCGGTTAGGCCCTGTTT 59.647 47.619 0.00 0.00 0.00 2.83
586 587 0.988832 TCAATCGGTTAGGCCCTGTT 59.011 50.000 0.00 0.00 0.00 3.16
587 588 0.252197 GTCAATCGGTTAGGCCCTGT 59.748 55.000 0.00 0.00 0.00 4.00
588 589 0.541863 AGTCAATCGGTTAGGCCCTG 59.458 55.000 0.00 0.00 0.00 4.45
589 590 0.541863 CAGTCAATCGGTTAGGCCCT 59.458 55.000 0.00 0.00 0.00 5.19
590 591 1.095807 GCAGTCAATCGGTTAGGCCC 61.096 60.000 0.00 0.00 0.00 5.80
591 592 1.429148 CGCAGTCAATCGGTTAGGCC 61.429 60.000 0.00 0.00 0.00 5.19
592 593 2.006772 CGCAGTCAATCGGTTAGGC 58.993 57.895 0.00 0.00 0.00 3.93
593 594 1.429148 GGCGCAGTCAATCGGTTAGG 61.429 60.000 10.83 0.00 0.00 2.69
594 595 0.739462 TGGCGCAGTCAATCGGTTAG 60.739 55.000 10.83 0.00 42.02 2.34
595 596 1.293818 TGGCGCAGTCAATCGGTTA 59.706 52.632 10.83 0.00 42.02 2.85
596 597 2.031919 TGGCGCAGTCAATCGGTT 59.968 55.556 10.83 0.00 42.02 4.44
604 605 2.894387 GGCTGAGATGGCGCAGTC 60.894 66.667 10.83 6.43 42.98 3.51
642 643 1.003839 TGCTCGGCGGAGATTTTGT 60.004 52.632 24.11 0.00 43.27 2.83
876 878 1.003233 GGATAGTTTCTATGGGCGGGG 59.997 57.143 0.00 0.00 0.00 5.73
889 891 0.389391 CGATGCGTGGAGGGATAGTT 59.611 55.000 0.00 0.00 0.00 2.24
893 895 4.241555 GGCGATGCGTGGAGGGAT 62.242 66.667 0.00 0.00 0.00 3.85
928 930 0.248215 GATGCGGATCTTGGTTTGCG 60.248 55.000 9.99 0.00 0.00 4.85
1005 1007 3.726517 CTCCAAGCGCCAACCGTG 61.727 66.667 2.29 0.00 39.71 4.94
1233 1236 8.748412 CCCCTATTAAAACAAAACATCATCTCA 58.252 33.333 0.00 0.00 0.00 3.27
1246 1249 4.355549 TCTCGACCTCCCCTATTAAAACA 58.644 43.478 0.00 0.00 0.00 2.83
1288 1293 1.442769 CTCCAGATCCACAACAACCG 58.557 55.000 0.00 0.00 0.00 4.44
1347 1352 5.805728 AGCACTGGCAGTATTAAACTACTT 58.194 37.500 21.59 0.00 44.61 2.24
1364 1369 4.569162 CCCATGATTTGCAATTTAGCACTG 59.431 41.667 0.00 0.00 45.61 3.66
1385 1390 3.874392 TTCTGCGGTAACTACTAACCC 57.126 47.619 0.00 0.00 31.68 4.11
1390 1395 5.148651 ACTCAATTTCTGCGGTAACTACT 57.851 39.130 0.00 0.00 0.00 2.57
1498 1505 6.860080 ACAGAGCATGTGGAATAAAAATCTG 58.140 36.000 0.00 0.00 41.91 2.90
1523 1530 6.743575 ACTACAGAGCATGTGGAATAAAAC 57.256 37.500 11.53 0.00 42.76 2.43
1528 1535 6.886459 ACAATAAACTACAGAGCATGTGGAAT 59.114 34.615 11.53 3.68 42.76 3.01
1537 1550 6.721571 TGCTGTAACAATAAACTACAGAGC 57.278 37.500 11.61 0.00 43.40 4.09
1558 1571 3.127721 GCCTCCATTAGACTGAAGTTTGC 59.872 47.826 0.00 0.00 0.00 3.68
1622 1635 1.700955 GGATCAGATGCTGCCCAAAT 58.299 50.000 0.00 0.00 0.00 2.32
1630 1643 3.053095 AGGAAAACATGGGATCAGATGCT 60.053 43.478 1.44 0.00 0.00 3.79
1640 1653 1.247567 AGTCGCAAGGAAAACATGGG 58.752 50.000 0.00 0.00 38.47 4.00
1643 1656 6.575162 AATCTTTAGTCGCAAGGAAAACAT 57.425 33.333 0.00 0.00 38.47 2.71
1644 1657 7.174253 ACATAATCTTTAGTCGCAAGGAAAACA 59.826 33.333 0.00 0.00 38.47 2.83
1645 1658 7.527457 ACATAATCTTTAGTCGCAAGGAAAAC 58.473 34.615 0.00 0.00 38.47 2.43
1646 1659 7.681939 ACATAATCTTTAGTCGCAAGGAAAA 57.318 32.000 0.00 0.00 38.47 2.29
1647 1660 7.681939 AACATAATCTTTAGTCGCAAGGAAA 57.318 32.000 0.00 0.00 38.47 3.13
1648 1661 7.681939 AAACATAATCTTTAGTCGCAAGGAA 57.318 32.000 0.00 0.00 38.47 3.36
1649 1662 7.148306 GGAAAACATAATCTTTAGTCGCAAGGA 60.148 37.037 0.00 0.00 38.47 3.36
1650 1663 6.967199 GGAAAACATAATCTTTAGTCGCAAGG 59.033 38.462 0.00 0.00 38.47 3.61
1651 1664 7.752695 AGGAAAACATAATCTTTAGTCGCAAG 58.247 34.615 0.00 0.00 0.00 4.01
1652 1665 7.681939 AGGAAAACATAATCTTTAGTCGCAA 57.318 32.000 0.00 0.00 0.00 4.85
1653 1666 7.526608 CAAGGAAAACATAATCTTTAGTCGCA 58.473 34.615 0.00 0.00 0.00 5.10
1654 1667 6.469275 GCAAGGAAAACATAATCTTTAGTCGC 59.531 38.462 0.00 0.00 0.00 5.19
1655 1668 6.682863 CGCAAGGAAAACATAATCTTTAGTCG 59.317 38.462 0.00 0.00 0.00 4.18
1656 1669 7.692705 GTCGCAAGGAAAACATAATCTTTAGTC 59.307 37.037 0.00 0.00 38.47 2.59
1657 1670 7.390718 AGTCGCAAGGAAAACATAATCTTTAGT 59.609 33.333 0.00 0.00 38.47 2.24
1658 1671 7.752695 AGTCGCAAGGAAAACATAATCTTTAG 58.247 34.615 0.00 0.00 38.47 1.85
1659 1672 7.681939 AGTCGCAAGGAAAACATAATCTTTA 57.318 32.000 0.00 0.00 38.47 1.85
1660 1673 6.575162 AGTCGCAAGGAAAACATAATCTTT 57.425 33.333 0.00 0.00 38.47 2.52
1661 1674 7.681939 TTAGTCGCAAGGAAAACATAATCTT 57.318 32.000 0.00 0.00 38.47 2.40
1662 1675 7.606456 TCTTTAGTCGCAAGGAAAACATAATCT 59.394 33.333 0.00 0.00 38.47 2.40
1663 1676 7.748847 TCTTTAGTCGCAAGGAAAACATAATC 58.251 34.615 0.00 0.00 38.47 1.75
1664 1677 7.681939 TCTTTAGTCGCAAGGAAAACATAAT 57.318 32.000 0.00 0.00 38.47 1.28
1665 1678 7.681939 ATCTTTAGTCGCAAGGAAAACATAA 57.318 32.000 0.00 0.00 38.47 1.90
1666 1679 7.681939 AATCTTTAGTCGCAAGGAAAACATA 57.318 32.000 0.00 0.00 38.47 2.29
1667 1680 6.575162 AATCTTTAGTCGCAAGGAAAACAT 57.425 33.333 0.00 0.00 38.47 2.71
1668 1681 7.174253 ACATAATCTTTAGTCGCAAGGAAAACA 59.826 33.333 0.00 0.00 38.47 2.83
1669 1682 7.527457 ACATAATCTTTAGTCGCAAGGAAAAC 58.473 34.615 0.00 0.00 38.47 2.43
1670 1683 7.681939 ACATAATCTTTAGTCGCAAGGAAAA 57.318 32.000 0.00 0.00 38.47 2.29
1671 1684 7.681939 AACATAATCTTTAGTCGCAAGGAAA 57.318 32.000 0.00 0.00 38.47 3.13
1672 1685 7.681939 AAACATAATCTTTAGTCGCAAGGAA 57.318 32.000 0.00 0.00 38.47 3.36
1673 1686 7.148306 GGAAAACATAATCTTTAGTCGCAAGGA 60.148 37.037 0.00 0.00 38.47 3.36
1674 1687 6.967199 GGAAAACATAATCTTTAGTCGCAAGG 59.033 38.462 0.00 0.00 38.47 3.61
1675 1688 7.752695 AGGAAAACATAATCTTTAGTCGCAAG 58.247 34.615 0.00 0.00 0.00 4.01
1676 1689 7.681939 AGGAAAACATAATCTTTAGTCGCAA 57.318 32.000 0.00 0.00 0.00 4.85
1677 1690 7.526608 CAAGGAAAACATAATCTTTAGTCGCA 58.473 34.615 0.00 0.00 0.00 5.10
1678 1691 6.469275 GCAAGGAAAACATAATCTTTAGTCGC 59.531 38.462 0.00 0.00 0.00 5.19
1679 1692 6.682863 CGCAAGGAAAACATAATCTTTAGTCG 59.317 38.462 0.00 0.00 0.00 4.18
1680 1693 7.692705 GTCGCAAGGAAAACATAATCTTTAGTC 59.307 37.037 0.00 0.00 38.47 2.59
1681 1694 7.390718 AGTCGCAAGGAAAACATAATCTTTAGT 59.609 33.333 0.00 0.00 38.47 2.24
1682 1695 7.752695 AGTCGCAAGGAAAACATAATCTTTAG 58.247 34.615 0.00 0.00 38.47 1.85
1683 1696 7.681939 AGTCGCAAGGAAAACATAATCTTTA 57.318 32.000 0.00 0.00 38.47 1.85
1684 1697 6.575162 AGTCGCAAGGAAAACATAATCTTT 57.425 33.333 0.00 0.00 38.47 2.52
1685 1698 7.681939 TTAGTCGCAAGGAAAACATAATCTT 57.318 32.000 0.00 0.00 38.47 2.40
1686 1699 7.148239 CCTTTAGTCGCAAGGAAAACATAATCT 60.148 37.037 0.00 0.00 43.32 2.40
1687 1700 6.967199 CCTTTAGTCGCAAGGAAAACATAATC 59.033 38.462 0.00 0.00 43.32 1.75
1688 1701 6.433093 ACCTTTAGTCGCAAGGAAAACATAAT 59.567 34.615 6.76 0.00 43.32 1.28
1689 1702 5.766174 ACCTTTAGTCGCAAGGAAAACATAA 59.234 36.000 6.76 0.00 43.32 1.90
1690 1703 5.310451 ACCTTTAGTCGCAAGGAAAACATA 58.690 37.500 6.76 0.00 43.32 2.29
1736 1752 1.967319 TTTGTTCCCACTGAGACAGC 58.033 50.000 0.00 0.00 34.37 4.40
1738 1754 2.930950 CCTTTTGTTCCCACTGAGACA 58.069 47.619 0.00 0.00 0.00 3.41
1781 1797 1.838073 TTCCCTGTCCGGAGAAAGGC 61.838 60.000 18.49 1.74 45.34 4.35
1881 1897 8.732746 ACCTTGAGAAAATAATACATACGCTT 57.267 30.769 0.00 0.00 0.00 4.68
1924 1940 4.319984 CCGGTTTGCTTAAGTTTAGTGGAC 60.320 45.833 4.02 0.00 0.00 4.02
2060 2077 6.839124 TCTGCTCAACAAATACATGGAAAT 57.161 33.333 0.00 0.00 0.00 2.17
2148 2280 9.399797 TCAACTTATCAATTGAGAGCATGTAAT 57.600 29.630 14.54 0.00 31.29 1.89
2149 2281 8.791327 TCAACTTATCAATTGAGAGCATGTAA 57.209 30.769 14.54 4.97 31.29 2.41
2155 2287 6.150140 ACAGGTTCAACTTATCAATTGAGAGC 59.850 38.462 14.54 6.38 36.26 4.09
2170 2302 6.569780 ACAAAATTGAAGGTACAGGTTCAAC 58.430 36.000 15.52 0.00 43.58 3.18
2177 2310 8.930760 TGTTTCAAAACAAAATTGAAGGTACAG 58.069 29.630 5.86 0.00 45.17 2.74
2290 2423 1.772063 GACTCGCACCGTGCTGTTTT 61.772 55.000 20.87 1.17 42.25 2.43
2320 2453 1.203994 CCTTTGGAGAAGCATTGGCAG 59.796 52.381 0.00 0.00 44.61 4.85
2331 2464 0.754472 AACGTCGGTTCCTTTGGAGA 59.246 50.000 0.00 0.00 31.21 3.71
2393 2526 1.218047 GACATGGCCACAGCTCGTA 59.782 57.895 8.16 0.00 39.73 3.43
2559 2692 2.380941 TGCCGCCAAGATAGTACTGTA 58.619 47.619 5.39 0.00 0.00 2.74
2560 2693 1.191535 TGCCGCCAAGATAGTACTGT 58.808 50.000 5.39 0.00 0.00 3.55
2561 2694 2.309528 TTGCCGCCAAGATAGTACTG 57.690 50.000 5.39 0.00 0.00 2.74
2562 2695 2.027561 TGTTTGCCGCCAAGATAGTACT 60.028 45.455 0.00 0.00 31.52 2.73
2563 2696 2.351726 CTGTTTGCCGCCAAGATAGTAC 59.648 50.000 0.00 0.00 31.52 2.73
2564 2697 2.627945 CTGTTTGCCGCCAAGATAGTA 58.372 47.619 0.00 0.00 31.52 1.82
2637 2770 3.926527 GTCACACGCTATGAAGTTCATGA 59.073 43.478 25.48 12.77 37.70 3.07
2696 2829 0.036952 CAACCGACCAGAGCATCACT 60.037 55.000 0.00 0.00 37.82 3.41
2697 2830 0.320771 ACAACCGACCAGAGCATCAC 60.321 55.000 0.00 0.00 37.82 3.06
2725 2858 2.436646 CCCAGGTGGTGCATCGAC 60.437 66.667 0.00 0.00 0.00 4.20
2766 2899 6.514947 AGTCAAGATCATCAAGCAGTATCTC 58.485 40.000 0.00 0.00 0.00 2.75
2808 2941 6.094603 ACACTTCAGAAGGACATATGCAAATC 59.905 38.462 14.90 0.00 0.00 2.17
2817 2950 2.811873 GCACCACACTTCAGAAGGACAT 60.812 50.000 14.90 0.00 0.00 3.06
2818 2951 1.475034 GCACCACACTTCAGAAGGACA 60.475 52.381 14.90 0.00 0.00 4.02
2819 2952 1.230324 GCACCACACTTCAGAAGGAC 58.770 55.000 14.90 0.00 0.00 3.85
2820 2953 0.836606 TGCACCACACTTCAGAAGGA 59.163 50.000 14.90 0.00 0.00 3.36
2861 2994 4.220602 ACCCAAGAAAATTATGCCAGACAC 59.779 41.667 0.00 0.00 0.00 3.67
2884 3017 2.168326 ACACTGATGCGTCATTGTCA 57.832 45.000 22.30 0.00 42.51 3.58
2942 3075 3.947910 TCTACCGTTTGATCCGAAACT 57.052 42.857 6.98 0.00 34.26 2.66
3062 3195 4.569015 GGGTAAGGGTTCAGCCATTTTCTA 60.569 45.833 0.00 0.00 38.18 2.10
3071 3204 2.755103 CAATGAAGGGTAAGGGTTCAGC 59.245 50.000 0.00 0.00 33.83 4.26
3299 3536 4.141937 GGAATACTGTCATGTGCTGGAGTA 60.142 45.833 0.00 0.00 0.00 2.59
3300 3537 3.369892 GGAATACTGTCATGTGCTGGAGT 60.370 47.826 0.00 0.00 0.00 3.85
3306 3543 5.886960 AAAAGAGGAATACTGTCATGTGC 57.113 39.130 0.00 0.00 0.00 4.57



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.