Multiple sequence alignment - TraesCS7A01G255900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G255900 chr7A 100.000 3009 0 0 1 3009 244471388 244474396 0.000000e+00 5557.0
1 TraesCS7A01G255900 chr7A 85.085 590 77 9 2422 3007 450977488 450978070 2.580000e-165 592.0
2 TraesCS7A01G255900 chr7A 85.437 103 11 4 390 490 605461281 605461181 1.480000e-18 104.0
3 TraesCS7A01G255900 chr7A 84.615 91 14 0 376 466 198659472 198659382 1.150000e-14 91.6
4 TraesCS7A01G255900 chr7D 94.779 1762 68 8 672 2423 231259085 231260832 0.000000e+00 2723.0
5 TraesCS7A01G255900 chr7D 85.615 577 75 7 2434 3007 264104563 264105134 1.540000e-167 599.0
6 TraesCS7A01G255900 chr7D 88.172 93 11 0 377 469 597506914 597506822 8.820000e-21 111.0
7 TraesCS7A01G255900 chr7B 92.264 879 42 14 643 1516 202774466 202775323 0.000000e+00 1223.0
8 TraesCS7A01G255900 chr7B 93.321 539 32 1 1507 2041 202775342 202775880 0.000000e+00 793.0
9 TraesCS7A01G255900 chr7B 85.542 581 76 7 2427 3004 400645883 400646458 4.290000e-168 601.0
10 TraesCS7A01G255900 chr7B 88.325 394 33 10 2032 2422 202775902 202776285 7.600000e-126 460.0
11 TraesCS7A01G255900 chr7B 90.291 103 10 0 466 568 202773750 202773852 5.230000e-28 135.0
12 TraesCS7A01G255900 chr7B 94.203 69 4 0 401 469 549930019 549930087 4.100000e-19 106.0
13 TraesCS7A01G255900 chr7B 91.935 62 5 0 581 642 202774328 202774389 1.490000e-13 87.9
14 TraesCS7A01G255900 chr7B 83.696 92 15 0 376 467 470702197 470702288 1.490000e-13 87.9
15 TraesCS7A01G255900 chr1A 98.073 467 7 2 1 467 39199539 39200003 0.000000e+00 811.0
16 TraesCS7A01G255900 chr4D 86.087 575 76 4 2435 3007 457746394 457746966 1.530000e-172 616.0
17 TraesCS7A01G255900 chr4D 85.690 580 75 5 2436 3009 311870041 311869464 3.320000e-169 604.0
18 TraesCS7A01G255900 chr4D 84.957 585 77 7 2434 3009 371654371 371653789 1.550000e-162 582.0
19 TraesCS7A01G255900 chr2A 85.522 594 76 8 2422 3009 765142693 765143282 1.980000e-171 612.0
20 TraesCS7A01G255900 chr4A 85.473 592 77 7 2422 3009 492036350 492036936 2.560000e-170 608.0
21 TraesCS7A01G255900 chr5A 84.706 595 80 8 2422 3009 440969730 440970320 4.320000e-163 584.0
22 TraesCS7A01G255900 chr4B 86.458 96 10 3 374 467 554623521 554623615 5.310000e-18 102.0
23 TraesCS7A01G255900 chr4B 85.263 95 11 3 374 466 357906901 357906994 8.880000e-16 95.3
24 TraesCS7A01G255900 chr1B 84.375 96 13 2 376 470 390441852 390441946 3.190000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G255900 chr7A 244471388 244474396 3008 False 5557.00 5557 100.0000 1 3009 1 chr7A.!!$F1 3008
1 TraesCS7A01G255900 chr7A 450977488 450978070 582 False 592.00 592 85.0850 2422 3007 1 chr7A.!!$F2 585
2 TraesCS7A01G255900 chr7D 231259085 231260832 1747 False 2723.00 2723 94.7790 672 2423 1 chr7D.!!$F1 1751
3 TraesCS7A01G255900 chr7D 264104563 264105134 571 False 599.00 599 85.6150 2434 3007 1 chr7D.!!$F2 573
4 TraesCS7A01G255900 chr7B 400645883 400646458 575 False 601.00 601 85.5420 2427 3004 1 chr7B.!!$F1 577
5 TraesCS7A01G255900 chr7B 202773750 202776285 2535 False 539.78 1223 91.2272 466 2422 5 chr7B.!!$F4 1956
6 TraesCS7A01G255900 chr4D 457746394 457746966 572 False 616.00 616 86.0870 2435 3007 1 chr4D.!!$F1 572
7 TraesCS7A01G255900 chr4D 311869464 311870041 577 True 604.00 604 85.6900 2436 3009 1 chr4D.!!$R1 573
8 TraesCS7A01G255900 chr4D 371653789 371654371 582 True 582.00 582 84.9570 2434 3009 1 chr4D.!!$R2 575
9 TraesCS7A01G255900 chr2A 765142693 765143282 589 False 612.00 612 85.5220 2422 3009 1 chr2A.!!$F1 587
10 TraesCS7A01G255900 chr4A 492036350 492036936 586 False 608.00 608 85.4730 2422 3009 1 chr4A.!!$F1 587
11 TraesCS7A01G255900 chr5A 440969730 440970320 590 False 584.00 584 84.7060 2422 3009 1 chr5A.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 260 0.032267 GTCGCCGGGGAAAGATAGAG 59.968 60.0 24.36 0.0 0.00 2.43 F
297 298 0.110678 GGAATTCGGGAGGGGATTCC 59.889 60.0 0.00 0.0 36.46 3.01 F
932 1472 0.116541 TCCTTCCTTTCGAGACCCCT 59.883 55.0 0.00 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1293 1834 0.106918 GAACACCACCACCACCTTCA 60.107 55.000 0.0 0.0 0.00 3.02 R
1326 1867 0.243907 CGAGAGTCCAAGGCGAGAAA 59.756 55.000 0.0 0.0 0.00 2.52 R
2306 2922 1.831736 ACTCTCCGTTATTGGACCCTG 59.168 52.381 0.0 0.0 33.48 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.674359 TTTGCAGCACGGAAGAAAGA 58.326 45.000 0.00 0.00 0.00 2.52
20 21 1.229428 TTGCAGCACGGAAGAAAGAG 58.771 50.000 0.00 0.00 0.00 2.85
21 22 0.392706 TGCAGCACGGAAGAAAGAGA 59.607 50.000 0.00 0.00 0.00 3.10
22 23 0.793250 GCAGCACGGAAGAAAGAGAC 59.207 55.000 0.00 0.00 0.00 3.36
23 24 1.606737 GCAGCACGGAAGAAAGAGACT 60.607 52.381 0.00 0.00 0.00 3.24
24 25 2.333014 CAGCACGGAAGAAAGAGACTC 58.667 52.381 0.00 0.00 0.00 3.36
25 26 2.029470 CAGCACGGAAGAAAGAGACTCT 60.029 50.000 0.00 0.00 0.00 3.24
26 27 2.230266 AGCACGGAAGAAAGAGACTCTC 59.770 50.000 5.20 0.00 0.00 3.20
27 28 2.857618 CACGGAAGAAAGAGACTCTCG 58.142 52.381 5.20 6.45 35.36 4.04
28 29 2.226912 CACGGAAGAAAGAGACTCTCGT 59.773 50.000 5.20 7.11 35.36 4.18
29 30 2.885894 ACGGAAGAAAGAGACTCTCGTT 59.114 45.455 5.20 6.91 35.14 3.85
30 31 3.238441 CGGAAGAAAGAGACTCTCGTTG 58.762 50.000 11.45 0.00 32.85 4.10
31 32 3.580731 GGAAGAAAGAGACTCTCGTTGG 58.419 50.000 11.45 0.00 32.85 3.77
32 33 3.256136 GGAAGAAAGAGACTCTCGTTGGA 59.744 47.826 11.45 0.00 32.85 3.53
33 34 4.262079 GGAAGAAAGAGACTCTCGTTGGAA 60.262 45.833 11.45 0.00 32.85 3.53
34 35 4.513198 AGAAAGAGACTCTCGTTGGAAG 57.487 45.455 11.45 0.00 32.85 3.46
35 36 3.892588 AGAAAGAGACTCTCGTTGGAAGT 59.107 43.478 11.45 0.00 32.85 3.01
36 37 4.342665 AGAAAGAGACTCTCGTTGGAAGTT 59.657 41.667 11.45 0.00 32.85 2.66
37 38 4.674281 AAGAGACTCTCGTTGGAAGTTT 57.326 40.909 5.20 0.00 35.36 2.66
38 39 5.786264 AAGAGACTCTCGTTGGAAGTTTA 57.214 39.130 5.20 0.00 35.36 2.01
39 40 5.379732 AGAGACTCTCGTTGGAAGTTTAG 57.620 43.478 0.00 0.00 35.36 1.85
40 41 4.218852 AGAGACTCTCGTTGGAAGTTTAGG 59.781 45.833 0.00 0.00 35.36 2.69
41 42 4.150359 AGACTCTCGTTGGAAGTTTAGGA 58.850 43.478 0.00 0.00 0.00 2.94
42 43 4.022155 AGACTCTCGTTGGAAGTTTAGGAC 60.022 45.833 0.00 0.00 0.00 3.85
43 44 3.006644 ACTCTCGTTGGAAGTTTAGGACC 59.993 47.826 0.00 0.00 0.00 4.46
44 45 3.236896 TCTCGTTGGAAGTTTAGGACCT 58.763 45.455 0.00 0.00 0.00 3.85
45 46 3.006537 TCTCGTTGGAAGTTTAGGACCTG 59.993 47.826 3.53 0.00 0.00 4.00
46 47 2.967201 TCGTTGGAAGTTTAGGACCTGA 59.033 45.455 3.53 0.00 0.00 3.86
47 48 3.006537 TCGTTGGAAGTTTAGGACCTGAG 59.993 47.826 3.53 0.00 0.00 3.35
48 49 3.244112 CGTTGGAAGTTTAGGACCTGAGT 60.244 47.826 3.53 0.00 0.00 3.41
49 50 4.316645 GTTGGAAGTTTAGGACCTGAGTC 58.683 47.826 3.53 0.00 42.73 3.36
50 51 3.583228 TGGAAGTTTAGGACCTGAGTCA 58.417 45.455 3.53 0.00 45.48 3.41
51 52 3.578716 TGGAAGTTTAGGACCTGAGTCAG 59.421 47.826 13.56 13.56 45.48 3.51
60 61 2.238353 CCTGAGTCAGGCACAAACG 58.762 57.895 26.03 0.18 45.13 3.60
61 62 1.230635 CCTGAGTCAGGCACAAACGG 61.231 60.000 26.03 0.23 45.13 4.44
62 63 1.227823 TGAGTCAGGCACAAACGGG 60.228 57.895 0.00 0.00 0.00 5.28
63 64 1.070786 GAGTCAGGCACAAACGGGA 59.929 57.895 0.00 0.00 0.00 5.14
64 65 0.534203 GAGTCAGGCACAAACGGGAA 60.534 55.000 0.00 0.00 0.00 3.97
65 66 0.110486 AGTCAGGCACAAACGGGAAT 59.890 50.000 0.00 0.00 0.00 3.01
66 67 0.521735 GTCAGGCACAAACGGGAATC 59.478 55.000 0.00 0.00 0.00 2.52
67 68 0.109532 TCAGGCACAAACGGGAATCA 59.890 50.000 0.00 0.00 0.00 2.57
68 69 0.958091 CAGGCACAAACGGGAATCAA 59.042 50.000 0.00 0.00 0.00 2.57
69 70 0.958822 AGGCACAAACGGGAATCAAC 59.041 50.000 0.00 0.00 0.00 3.18
70 71 0.038618 GGCACAAACGGGAATCAACC 60.039 55.000 0.00 0.00 0.00 3.77
71 72 0.038618 GCACAAACGGGAATCAACCC 60.039 55.000 0.00 0.00 45.92 4.11
72 73 0.601057 CACAAACGGGAATCAACCCC 59.399 55.000 0.00 0.00 46.62 4.95
73 74 0.186386 ACAAACGGGAATCAACCCCA 59.814 50.000 0.00 0.00 46.62 4.96
74 75 0.887933 CAAACGGGAATCAACCCCAG 59.112 55.000 0.00 0.00 46.62 4.45
75 76 0.898326 AAACGGGAATCAACCCCAGC 60.898 55.000 0.00 0.00 46.62 4.85
76 77 2.075355 AACGGGAATCAACCCCAGCA 62.075 55.000 0.00 0.00 46.62 4.41
77 78 1.750399 CGGGAATCAACCCCAGCAG 60.750 63.158 0.00 0.00 46.62 4.24
78 79 2.054453 GGGAATCAACCCCAGCAGC 61.054 63.158 0.00 0.00 43.81 5.25
79 80 2.054453 GGAATCAACCCCAGCAGCC 61.054 63.158 0.00 0.00 0.00 4.85
80 81 1.304381 GAATCAACCCCAGCAGCCA 60.304 57.895 0.00 0.00 0.00 4.75
81 82 1.598701 GAATCAACCCCAGCAGCCAC 61.599 60.000 0.00 0.00 0.00 5.01
82 83 2.370459 AATCAACCCCAGCAGCCACA 62.370 55.000 0.00 0.00 0.00 4.17
83 84 2.370459 ATCAACCCCAGCAGCCACAA 62.370 55.000 0.00 0.00 0.00 3.33
84 85 2.132996 CAACCCCAGCAGCCACAAA 61.133 57.895 0.00 0.00 0.00 2.83
85 86 1.833934 AACCCCAGCAGCCACAAAG 60.834 57.895 0.00 0.00 0.00 2.77
86 87 2.993264 CCCCAGCAGCCACAAAGG 60.993 66.667 0.00 0.00 41.84 3.11
87 88 2.993264 CCCAGCAGCCACAAAGGG 60.993 66.667 0.00 0.00 38.09 3.95
88 89 2.115910 CCAGCAGCCACAAAGGGA 59.884 61.111 0.00 0.00 38.09 4.20
89 90 1.531365 CCAGCAGCCACAAAGGGAA 60.531 57.895 0.00 0.00 38.09 3.97
90 91 1.114722 CCAGCAGCCACAAAGGGAAA 61.115 55.000 0.00 0.00 38.09 3.13
91 92 0.752054 CAGCAGCCACAAAGGGAAAA 59.248 50.000 0.00 0.00 38.09 2.29
92 93 1.138661 CAGCAGCCACAAAGGGAAAAA 59.861 47.619 0.00 0.00 38.09 1.94
122 123 8.803397 AGGAACTTACTGTAGAAAACAAACTT 57.197 30.769 0.00 0.00 32.91 2.66
123 124 8.674607 AGGAACTTACTGTAGAAAACAAACTTG 58.325 33.333 0.00 0.00 32.91 3.16
124 125 7.913821 GGAACTTACTGTAGAAAACAAACTTGG 59.086 37.037 0.00 0.00 37.74 3.61
125 126 6.792326 ACTTACTGTAGAAAACAAACTTGGC 58.208 36.000 0.00 0.00 37.74 4.52
126 127 4.649088 ACTGTAGAAAACAAACTTGGCC 57.351 40.909 0.00 0.00 37.74 5.36
127 128 4.020543 ACTGTAGAAAACAAACTTGGCCA 58.979 39.130 0.00 0.00 37.74 5.36
128 129 4.649218 ACTGTAGAAAACAAACTTGGCCAT 59.351 37.500 6.09 0.00 37.74 4.40
129 130 4.942852 TGTAGAAAACAAACTTGGCCATG 58.057 39.130 16.76 16.76 34.29 3.66
130 131 3.473923 AGAAAACAAACTTGGCCATGG 57.526 42.857 21.67 7.63 0.00 3.66
131 132 1.872952 GAAAACAAACTTGGCCATGGC 59.127 47.619 29.47 29.47 41.06 4.40
132 133 0.835941 AAACAAACTTGGCCATGGCA 59.164 45.000 36.56 20.63 44.11 4.92
133 134 0.393820 AACAAACTTGGCCATGGCAG 59.606 50.000 36.56 27.73 44.11 4.85
134 135 1.375013 CAAACTTGGCCATGGCAGC 60.375 57.895 36.56 21.53 44.11 5.25
135 136 1.837947 AAACTTGGCCATGGCAGCA 60.838 52.632 36.56 23.94 44.11 4.41
136 137 1.409251 AAACTTGGCCATGGCAGCAA 61.409 50.000 36.56 28.57 44.11 3.91
137 138 1.196104 AACTTGGCCATGGCAGCAAT 61.196 50.000 36.56 17.51 44.11 3.56
138 139 1.143183 CTTGGCCATGGCAGCAATC 59.857 57.895 36.56 19.29 44.11 2.67
139 140 2.306255 CTTGGCCATGGCAGCAATCC 62.306 60.000 36.56 18.56 44.11 3.01
140 141 3.543641 GGCCATGGCAGCAATCCC 61.544 66.667 36.56 14.15 44.11 3.85
141 142 2.443390 GCCATGGCAGCAATCCCT 60.443 61.111 32.08 0.00 41.49 4.20
142 143 2.792947 GCCATGGCAGCAATCCCTG 61.793 63.158 32.08 0.00 41.49 4.45
154 155 3.296322 CAATCCCTGCTATCGTCTCTC 57.704 52.381 0.00 0.00 0.00 3.20
155 156 2.890311 CAATCCCTGCTATCGTCTCTCT 59.110 50.000 0.00 0.00 0.00 3.10
156 157 1.974265 TCCCTGCTATCGTCTCTCTG 58.026 55.000 0.00 0.00 0.00 3.35
157 158 1.490910 TCCCTGCTATCGTCTCTCTGA 59.509 52.381 0.00 0.00 0.00 3.27
158 159 2.107378 TCCCTGCTATCGTCTCTCTGAT 59.893 50.000 0.00 0.00 0.00 2.90
159 160 2.228582 CCCTGCTATCGTCTCTCTGATG 59.771 54.545 0.00 0.00 0.00 3.07
160 161 2.228582 CCTGCTATCGTCTCTCTGATGG 59.771 54.545 0.00 0.00 32.70 3.51
161 162 1.611006 TGCTATCGTCTCTCTGATGGC 59.389 52.381 3.93 3.93 45.86 4.40
162 163 1.067915 GCTATCGTCTCTCTGATGGCC 60.068 57.143 0.00 0.00 41.57 5.36
163 164 2.513753 CTATCGTCTCTCTGATGGCCT 58.486 52.381 3.32 0.00 32.70 5.19
164 165 2.666272 ATCGTCTCTCTGATGGCCTA 57.334 50.000 3.32 0.00 32.70 3.93
165 166 1.681538 TCGTCTCTCTGATGGCCTAC 58.318 55.000 3.32 0.00 32.70 3.18
166 167 1.064685 TCGTCTCTCTGATGGCCTACA 60.065 52.381 3.32 3.01 32.70 2.74
167 168 1.066303 CGTCTCTCTGATGGCCTACAC 59.934 57.143 3.32 0.00 0.00 2.90
168 169 1.066303 GTCTCTCTGATGGCCTACACG 59.934 57.143 3.32 0.00 0.00 4.49
169 170 0.249238 CTCTCTGATGGCCTACACGC 60.249 60.000 3.32 0.00 0.00 5.34
178 179 3.875838 GCCTACACGCCAGATCTAG 57.124 57.895 0.00 0.00 0.00 2.43
179 180 1.319541 GCCTACACGCCAGATCTAGA 58.680 55.000 0.00 0.00 0.00 2.43
180 181 1.268352 GCCTACACGCCAGATCTAGAG 59.732 57.143 0.00 0.00 0.00 2.43
181 182 1.883275 CCTACACGCCAGATCTAGAGG 59.117 57.143 0.00 0.00 0.00 3.69
182 183 1.883275 CTACACGCCAGATCTAGAGGG 59.117 57.143 0.00 0.00 0.00 4.30
183 184 0.259065 ACACGCCAGATCTAGAGGGA 59.741 55.000 0.46 0.00 0.00 4.20
184 185 0.958091 CACGCCAGATCTAGAGGGAG 59.042 60.000 11.06 10.08 0.00 4.30
185 186 0.847373 ACGCCAGATCTAGAGGGAGA 59.153 55.000 15.33 0.00 0.00 3.71
186 187 1.215673 ACGCCAGATCTAGAGGGAGAA 59.784 52.381 15.33 0.00 0.00 2.87
187 188 2.311463 CGCCAGATCTAGAGGGAGAAA 58.689 52.381 11.06 0.00 0.00 2.52
188 189 2.896685 CGCCAGATCTAGAGGGAGAAAT 59.103 50.000 11.06 0.00 0.00 2.17
189 190 4.082845 CGCCAGATCTAGAGGGAGAAATA 58.917 47.826 11.06 0.00 0.00 1.40
190 191 4.082463 CGCCAGATCTAGAGGGAGAAATAC 60.082 50.000 11.06 0.00 0.00 1.89
191 192 4.221924 GCCAGATCTAGAGGGAGAAATACC 59.778 50.000 11.06 0.00 0.00 2.73
201 202 4.642466 GGGAGAAATACCCTATCCAAGG 57.358 50.000 0.00 0.00 46.09 3.61
212 213 3.826282 TCCAAGGGGAGGCAAGAG 58.174 61.111 0.00 0.00 38.64 2.85
213 214 1.925455 TCCAAGGGGAGGCAAGAGG 60.925 63.158 0.00 0.00 38.64 3.69
214 215 2.679716 CAAGGGGAGGCAAGAGGG 59.320 66.667 0.00 0.00 0.00 4.30
215 216 1.925455 CAAGGGGAGGCAAGAGGGA 60.925 63.158 0.00 0.00 0.00 4.20
216 217 1.085605 AAGGGGAGGCAAGAGGGAT 59.914 57.895 0.00 0.00 0.00 3.85
217 218 0.990818 AAGGGGAGGCAAGAGGGATC 60.991 60.000 0.00 0.00 0.00 3.36
218 219 2.456443 GGGGAGGCAAGAGGGATCC 61.456 68.421 1.92 1.92 0.00 3.36
219 220 1.385206 GGGAGGCAAGAGGGATCCT 60.385 63.158 12.58 0.00 36.03 3.24
228 229 3.808984 GAGGGATCCTCGCCAAAAT 57.191 52.632 12.58 0.00 41.08 1.82
229 230 1.598882 GAGGGATCCTCGCCAAAATC 58.401 55.000 12.58 0.00 41.08 2.17
230 231 0.179045 AGGGATCCTCGCCAAAATCG 60.179 55.000 12.58 0.00 0.00 3.34
231 232 0.179056 GGGATCCTCGCCAAAATCGA 60.179 55.000 12.58 0.00 34.52 3.59
232 233 0.938008 GGATCCTCGCCAAAATCGAC 59.062 55.000 3.84 0.00 32.08 4.20
233 234 1.473434 GGATCCTCGCCAAAATCGACT 60.473 52.381 3.84 0.00 32.08 4.18
234 235 2.280628 GATCCTCGCCAAAATCGACTT 58.719 47.619 0.00 0.00 32.08 3.01
235 236 1.722011 TCCTCGCCAAAATCGACTTC 58.278 50.000 0.00 0.00 32.08 3.01
236 237 1.001520 TCCTCGCCAAAATCGACTTCA 59.998 47.619 0.00 0.00 32.08 3.02
237 238 1.394917 CCTCGCCAAAATCGACTTCAG 59.605 52.381 0.00 0.00 32.08 3.02
238 239 2.069273 CTCGCCAAAATCGACTTCAGT 58.931 47.619 0.00 0.00 32.08 3.41
239 240 1.798223 TCGCCAAAATCGACTTCAGTG 59.202 47.619 0.00 0.00 0.00 3.66
240 241 1.135972 CGCCAAAATCGACTTCAGTGG 60.136 52.381 0.00 0.00 0.00 4.00
241 242 1.880027 GCCAAAATCGACTTCAGTGGT 59.120 47.619 0.00 0.00 0.00 4.16
242 243 2.095718 GCCAAAATCGACTTCAGTGGTC 60.096 50.000 0.00 0.00 0.00 4.02
247 248 2.432628 GACTTCAGTGGTCGCCGG 60.433 66.667 0.00 0.00 0.00 6.13
248 249 3.934391 GACTTCAGTGGTCGCCGGG 62.934 68.421 2.18 0.00 0.00 5.73
249 250 4.760047 CTTCAGTGGTCGCCGGGG 62.760 72.222 13.31 13.31 0.00 5.73
252 253 4.323477 CAGTGGTCGCCGGGGAAA 62.323 66.667 24.36 11.99 0.00 3.13
253 254 4.016706 AGTGGTCGCCGGGGAAAG 62.017 66.667 24.36 0.00 0.00 2.62
254 255 4.011517 GTGGTCGCCGGGGAAAGA 62.012 66.667 24.36 7.04 0.00 2.52
255 256 3.006728 TGGTCGCCGGGGAAAGAT 61.007 61.111 24.36 0.00 0.00 2.40
256 257 1.686455 TGGTCGCCGGGGAAAGATA 60.686 57.895 24.36 5.11 0.00 1.98
257 258 1.069258 GGTCGCCGGGGAAAGATAG 59.931 63.158 24.36 0.00 0.00 2.08
258 259 1.397390 GGTCGCCGGGGAAAGATAGA 61.397 60.000 24.36 0.00 0.00 1.98
259 260 0.032267 GTCGCCGGGGAAAGATAGAG 59.968 60.000 24.36 0.00 0.00 2.43
260 261 1.113517 TCGCCGGGGAAAGATAGAGG 61.114 60.000 20.34 0.00 0.00 3.69
261 262 1.113517 CGCCGGGGAAAGATAGAGGA 61.114 60.000 14.46 0.00 0.00 3.71
262 263 0.682292 GCCGGGGAAAGATAGAGGAG 59.318 60.000 2.18 0.00 0.00 3.69
263 264 1.758123 GCCGGGGAAAGATAGAGGAGA 60.758 57.143 2.18 0.00 0.00 3.71
264 265 2.243810 CCGGGGAAAGATAGAGGAGAG 58.756 57.143 0.00 0.00 0.00 3.20
265 266 2.158445 CCGGGGAAAGATAGAGGAGAGA 60.158 54.545 0.00 0.00 0.00 3.10
266 267 3.153919 CGGGGAAAGATAGAGGAGAGAG 58.846 54.545 0.00 0.00 0.00 3.20
267 268 3.506398 GGGGAAAGATAGAGGAGAGAGG 58.494 54.545 0.00 0.00 0.00 3.69
268 269 2.897326 GGGAAAGATAGAGGAGAGAGGC 59.103 54.545 0.00 0.00 0.00 4.70
269 270 3.437931 GGGAAAGATAGAGGAGAGAGGCT 60.438 52.174 0.00 0.00 0.00 4.58
270 271 3.826729 GGAAAGATAGAGGAGAGAGGCTC 59.173 52.174 6.34 6.34 43.17 4.70
271 272 4.469657 GAAAGATAGAGGAGAGAGGCTCA 58.530 47.826 18.26 0.00 45.81 4.26
272 273 3.508845 AGATAGAGGAGAGAGGCTCAC 57.491 52.381 18.26 10.96 45.81 3.51
273 274 2.108250 AGATAGAGGAGAGAGGCTCACC 59.892 54.545 18.26 16.03 45.81 4.02
274 275 0.181587 TAGAGGAGAGAGGCTCACCG 59.818 60.000 18.26 0.00 44.09 4.94
275 276 2.757917 AGGAGAGAGGCTCACCGC 60.758 66.667 18.26 9.50 44.09 5.68
276 277 3.071206 GGAGAGAGGCTCACCGCA 61.071 66.667 18.26 0.00 45.81 5.69
277 278 2.650116 GGAGAGAGGCTCACCGCAA 61.650 63.158 18.26 0.00 45.81 4.85
278 279 1.153667 GAGAGAGGCTCACCGCAAG 60.154 63.158 18.26 0.00 43.38 4.01
290 291 3.813596 CGCAAGGAATTCGGGAGG 58.186 61.111 0.00 0.00 0.00 4.30
291 292 1.819632 CGCAAGGAATTCGGGAGGG 60.820 63.158 0.00 0.00 0.00 4.30
292 293 1.453928 GCAAGGAATTCGGGAGGGG 60.454 63.158 0.00 0.00 0.00 4.79
293 294 1.921869 GCAAGGAATTCGGGAGGGGA 61.922 60.000 0.00 0.00 0.00 4.81
294 295 0.846693 CAAGGAATTCGGGAGGGGAT 59.153 55.000 0.00 0.00 0.00 3.85
295 296 1.215423 CAAGGAATTCGGGAGGGGATT 59.785 52.381 0.00 0.00 0.00 3.01
296 297 1.141185 AGGAATTCGGGAGGGGATTC 58.859 55.000 0.00 0.00 0.00 2.52
297 298 0.110678 GGAATTCGGGAGGGGATTCC 59.889 60.000 0.00 0.00 36.46 3.01
316 317 1.854227 CCGAAGGCTCGTTATCTTCC 58.146 55.000 0.00 0.00 46.14 3.46
317 318 1.538419 CCGAAGGCTCGTTATCTTCCC 60.538 57.143 0.00 0.00 46.14 3.97
318 319 1.538419 CGAAGGCTCGTTATCTTCCCC 60.538 57.143 0.00 0.00 40.33 4.81
319 320 0.464452 AAGGCTCGTTATCTTCCCCG 59.536 55.000 0.00 0.00 0.00 5.73
320 321 0.396695 AGGCTCGTTATCTTCCCCGA 60.397 55.000 0.00 0.00 0.00 5.14
324 325 2.723322 TCGTTATCTTCCCCGAGAGA 57.277 50.000 0.00 0.00 0.00 3.10
325 326 3.008835 TCGTTATCTTCCCCGAGAGAA 57.991 47.619 0.00 0.00 0.00 2.87
326 327 2.950309 TCGTTATCTTCCCCGAGAGAAG 59.050 50.000 3.49 3.49 41.76 2.85
327 328 2.034812 CGTTATCTTCCCCGAGAGAAGG 59.965 54.545 8.54 0.00 40.94 3.46
328 329 3.297736 GTTATCTTCCCCGAGAGAAGGA 58.702 50.000 8.54 0.00 40.94 3.36
329 330 2.080654 ATCTTCCCCGAGAGAAGGAG 57.919 55.000 8.54 0.00 40.94 3.69
330 331 1.000496 TCTTCCCCGAGAGAAGGAGA 59.000 55.000 8.54 0.00 40.94 3.71
331 332 1.358103 TCTTCCCCGAGAGAAGGAGAA 59.642 52.381 8.54 0.00 40.94 2.87
332 333 2.023888 TCTTCCCCGAGAGAAGGAGAAT 60.024 50.000 8.54 0.00 40.94 2.40
333 334 2.074729 TCCCCGAGAGAAGGAGAATC 57.925 55.000 0.00 0.00 0.00 2.52
334 335 1.571457 TCCCCGAGAGAAGGAGAATCT 59.429 52.381 0.00 0.00 33.73 2.40
335 336 1.960689 CCCCGAGAGAAGGAGAATCTC 59.039 57.143 0.71 0.71 42.95 2.75
347 348 3.305398 GAGAATCTCCACGTGTTCTGT 57.695 47.619 20.10 1.37 31.51 3.41
348 349 3.654414 GAGAATCTCCACGTGTTCTGTT 58.346 45.455 20.10 6.94 31.51 3.16
349 350 4.058817 GAGAATCTCCACGTGTTCTGTTT 58.941 43.478 20.10 4.96 31.51 2.83
350 351 4.058817 AGAATCTCCACGTGTTCTGTTTC 58.941 43.478 15.65 9.45 30.27 2.78
351 352 2.971660 TCTCCACGTGTTCTGTTTCA 57.028 45.000 15.65 0.00 0.00 2.69
352 353 2.821546 TCTCCACGTGTTCTGTTTCAG 58.178 47.619 15.65 0.00 0.00 3.02
353 354 1.867233 CTCCACGTGTTCTGTTTCAGG 59.133 52.381 15.65 0.00 31.51 3.86
354 355 0.944386 CCACGTGTTCTGTTTCAGGG 59.056 55.000 15.65 0.00 31.51 4.45
355 356 1.474320 CCACGTGTTCTGTTTCAGGGA 60.474 52.381 15.65 0.00 31.51 4.20
356 357 1.597663 CACGTGTTCTGTTTCAGGGAC 59.402 52.381 7.58 0.00 31.51 4.46
357 358 1.208535 ACGTGTTCTGTTTCAGGGACA 59.791 47.619 0.00 1.08 31.51 4.02
358 359 2.285083 CGTGTTCTGTTTCAGGGACAA 58.715 47.619 7.85 0.00 32.90 3.18
359 360 2.878406 CGTGTTCTGTTTCAGGGACAAT 59.122 45.455 7.85 0.00 32.90 2.71
360 361 3.058914 CGTGTTCTGTTTCAGGGACAATC 60.059 47.826 7.85 0.00 32.90 2.67
361 362 3.058914 GTGTTCTGTTTCAGGGACAATCG 60.059 47.826 7.85 0.00 32.90 3.34
362 363 2.472695 TCTGTTTCAGGGACAATCGG 57.527 50.000 0.00 0.00 31.51 4.18
363 364 1.003118 TCTGTTTCAGGGACAATCGGG 59.997 52.381 0.00 0.00 31.51 5.14
364 365 0.608035 TGTTTCAGGGACAATCGGGC 60.608 55.000 0.00 0.00 0.00 6.13
365 366 0.608035 GTTTCAGGGACAATCGGGCA 60.608 55.000 0.00 0.00 0.00 5.36
366 367 0.608035 TTTCAGGGACAATCGGGCAC 60.608 55.000 0.00 0.00 0.00 5.01
367 368 1.773856 TTCAGGGACAATCGGGCACA 61.774 55.000 0.00 0.00 0.00 4.57
368 369 1.303236 CAGGGACAATCGGGCACAA 60.303 57.895 0.00 0.00 0.00 3.33
369 370 0.680921 CAGGGACAATCGGGCACAAT 60.681 55.000 0.00 0.00 0.00 2.71
370 371 0.680921 AGGGACAATCGGGCACAATG 60.681 55.000 0.00 0.00 0.00 2.82
371 372 0.679640 GGGACAATCGGGCACAATGA 60.680 55.000 0.00 0.00 0.00 2.57
372 373 0.734889 GGACAATCGGGCACAATGAG 59.265 55.000 0.00 0.00 0.00 2.90
373 374 1.453155 GACAATCGGGCACAATGAGT 58.547 50.000 0.00 0.00 0.00 3.41
374 375 1.398390 GACAATCGGGCACAATGAGTC 59.602 52.381 0.00 0.00 0.00 3.36
375 376 1.271325 ACAATCGGGCACAATGAGTCA 60.271 47.619 0.00 0.00 0.00 3.41
376 377 2.019249 CAATCGGGCACAATGAGTCAT 58.981 47.619 0.00 0.00 0.00 3.06
377 378 1.959042 ATCGGGCACAATGAGTCATC 58.041 50.000 5.98 0.00 0.00 2.92
378 379 0.904649 TCGGGCACAATGAGTCATCT 59.095 50.000 5.98 0.00 0.00 2.90
379 380 1.134699 TCGGGCACAATGAGTCATCTC 60.135 52.381 5.98 0.00 40.79 2.75
388 389 1.928868 TGAGTCATCTCAGCCTCACA 58.071 50.000 0.00 0.00 44.58 3.58
389 390 2.464782 TGAGTCATCTCAGCCTCACAT 58.535 47.619 0.00 0.00 44.58 3.21
390 391 2.836372 TGAGTCATCTCAGCCTCACATT 59.164 45.455 0.00 0.00 44.58 2.71
391 392 3.262660 TGAGTCATCTCAGCCTCACATTT 59.737 43.478 0.00 0.00 44.58 2.32
392 393 3.870419 GAGTCATCTCAGCCTCACATTTC 59.130 47.826 0.00 0.00 40.18 2.17
393 394 3.262660 AGTCATCTCAGCCTCACATTTCA 59.737 43.478 0.00 0.00 0.00 2.69
394 395 3.622163 GTCATCTCAGCCTCACATTTCAG 59.378 47.826 0.00 0.00 0.00 3.02
395 396 3.516700 TCATCTCAGCCTCACATTTCAGA 59.483 43.478 0.00 0.00 0.00 3.27
396 397 4.163649 TCATCTCAGCCTCACATTTCAGAT 59.836 41.667 0.00 0.00 0.00 2.90
397 398 4.134379 TCTCAGCCTCACATTTCAGATC 57.866 45.455 0.00 0.00 0.00 2.75
398 399 3.118482 TCTCAGCCTCACATTTCAGATCC 60.118 47.826 0.00 0.00 0.00 3.36
399 400 1.938577 CAGCCTCACATTTCAGATCCG 59.061 52.381 0.00 0.00 0.00 4.18
400 401 1.833630 AGCCTCACATTTCAGATCCGA 59.166 47.619 0.00 0.00 0.00 4.55
401 402 1.936547 GCCTCACATTTCAGATCCGAC 59.063 52.381 0.00 0.00 0.00 4.79
402 403 2.196749 CCTCACATTTCAGATCCGACG 58.803 52.381 0.00 0.00 0.00 5.12
403 404 2.196749 CTCACATTTCAGATCCGACGG 58.803 52.381 7.84 7.84 0.00 4.79
404 405 1.548719 TCACATTTCAGATCCGACGGT 59.451 47.619 14.79 0.67 0.00 4.83
405 406 1.660607 CACATTTCAGATCCGACGGTG 59.339 52.381 14.79 5.12 0.00 4.94
406 407 1.275291 ACATTTCAGATCCGACGGTGT 59.725 47.619 14.79 5.19 0.00 4.16
407 408 2.494471 ACATTTCAGATCCGACGGTGTA 59.506 45.455 14.79 0.00 0.00 2.90
408 409 2.933495 TTTCAGATCCGACGGTGTAG 57.067 50.000 14.79 3.38 0.00 2.74
409 410 2.118313 TTCAGATCCGACGGTGTAGA 57.882 50.000 14.79 5.81 0.00 2.59
410 411 2.343484 TCAGATCCGACGGTGTAGAT 57.657 50.000 14.79 0.00 0.00 1.98
411 412 1.947456 TCAGATCCGACGGTGTAGATG 59.053 52.381 14.79 5.94 0.00 2.90
412 413 1.947456 CAGATCCGACGGTGTAGATGA 59.053 52.381 14.79 0.00 0.00 2.92
413 414 2.031595 CAGATCCGACGGTGTAGATGAG 60.032 54.545 14.79 0.00 0.00 2.90
414 415 2.158798 AGATCCGACGGTGTAGATGAGA 60.159 50.000 14.79 0.00 0.00 3.27
415 416 2.343484 TCCGACGGTGTAGATGAGAT 57.657 50.000 14.79 0.00 0.00 2.75
416 417 1.947456 TCCGACGGTGTAGATGAGATG 59.053 52.381 14.79 0.00 0.00 2.90
417 418 1.947456 CCGACGGTGTAGATGAGATGA 59.053 52.381 5.48 0.00 0.00 2.92
418 419 2.357952 CCGACGGTGTAGATGAGATGAA 59.642 50.000 5.48 0.00 0.00 2.57
419 420 3.549019 CCGACGGTGTAGATGAGATGAAG 60.549 52.174 5.48 0.00 0.00 3.02
420 421 3.549019 CGACGGTGTAGATGAGATGAAGG 60.549 52.174 0.00 0.00 0.00 3.46
421 422 2.101582 ACGGTGTAGATGAGATGAAGGC 59.898 50.000 0.00 0.00 0.00 4.35
422 423 2.101415 CGGTGTAGATGAGATGAAGGCA 59.899 50.000 0.00 0.00 0.00 4.75
423 424 3.726607 GGTGTAGATGAGATGAAGGCAG 58.273 50.000 0.00 0.00 0.00 4.85
424 425 3.494048 GGTGTAGATGAGATGAAGGCAGG 60.494 52.174 0.00 0.00 0.00 4.85
425 426 2.103771 TGTAGATGAGATGAAGGCAGGC 59.896 50.000 0.00 0.00 0.00 4.85
426 427 1.210538 AGATGAGATGAAGGCAGGCA 58.789 50.000 0.00 0.00 0.00 4.75
427 428 1.134159 AGATGAGATGAAGGCAGGCAC 60.134 52.381 0.00 0.00 0.00 5.01
428 429 0.463295 ATGAGATGAAGGCAGGCACG 60.463 55.000 0.00 0.00 0.00 5.34
429 430 2.437359 AGATGAAGGCAGGCACGC 60.437 61.111 0.00 0.00 0.00 5.34
438 439 3.434319 CAGGCACGCCATCACCAC 61.434 66.667 11.35 0.00 38.92 4.16
439 440 4.722700 AGGCACGCCATCACCACC 62.723 66.667 11.35 0.00 38.92 4.61
441 442 2.983030 GCACGCCATCACCACCAA 60.983 61.111 0.00 0.00 0.00 3.67
442 443 2.953821 CACGCCATCACCACCAAC 59.046 61.111 0.00 0.00 0.00 3.77
443 444 1.600636 CACGCCATCACCACCAACT 60.601 57.895 0.00 0.00 0.00 3.16
444 445 1.302511 ACGCCATCACCACCAACTC 60.303 57.895 0.00 0.00 0.00 3.01
445 446 2.390599 CGCCATCACCACCAACTCG 61.391 63.158 0.00 0.00 0.00 4.18
446 447 2.690778 GCCATCACCACCAACTCGC 61.691 63.158 0.00 0.00 0.00 5.03
447 448 1.003355 CCATCACCACCAACTCGCT 60.003 57.895 0.00 0.00 0.00 4.93
448 449 0.606401 CCATCACCACCAACTCGCTT 60.606 55.000 0.00 0.00 0.00 4.68
449 450 1.238439 CATCACCACCAACTCGCTTT 58.762 50.000 0.00 0.00 0.00 3.51
450 451 1.608590 CATCACCACCAACTCGCTTTT 59.391 47.619 0.00 0.00 0.00 2.27
451 452 1.757682 TCACCACCAACTCGCTTTTT 58.242 45.000 0.00 0.00 0.00 1.94
529 530 9.822727 TGATACTATCCATTGTGAGAGGTATAA 57.177 33.333 0.00 0.00 0.00 0.98
539 540 9.906660 CATTGTGAGAGGTATAAGAGTATTCTC 57.093 37.037 0.00 0.00 40.70 2.87
558 559 9.886132 GTATTCTCTAGTTCCACCTATGAAAAA 57.114 33.333 0.00 0.00 0.00 1.94
559 560 8.794335 ATTCTCTAGTTCCACCTATGAAAAAC 57.206 34.615 0.00 0.00 0.00 2.43
561 562 7.741785 TCTCTAGTTCCACCTATGAAAAACAA 58.258 34.615 0.00 0.00 0.00 2.83
568 569 5.123186 TCCACCTATGAAAAACAATAGCGTG 59.877 40.000 0.00 0.00 0.00 5.34
569 570 5.123186 CCACCTATGAAAAACAATAGCGTGA 59.877 40.000 0.00 0.00 0.00 4.35
571 572 5.703592 ACCTATGAAAAACAATAGCGTGACA 59.296 36.000 0.00 0.00 0.00 3.58
573 574 7.094377 ACCTATGAAAAACAATAGCGTGACATT 60.094 33.333 0.00 0.00 0.00 2.71
574 575 8.394877 CCTATGAAAAACAATAGCGTGACATTA 58.605 33.333 0.00 0.00 0.00 1.90
575 576 9.935682 CTATGAAAAACAATAGCGTGACATTAT 57.064 29.630 0.00 0.00 0.00 1.28
577 578 7.026562 TGAAAAACAATAGCGTGACATTATGG 58.973 34.615 0.00 0.00 0.00 2.74
578 579 5.499139 AAACAATAGCGTGACATTATGGG 57.501 39.130 0.00 0.00 0.00 4.00
579 580 4.150897 ACAATAGCGTGACATTATGGGT 57.849 40.909 0.00 0.00 0.00 4.51
623 1087 6.954487 TTTTTCACTTTTTCTAGAGACCCC 57.046 37.500 0.00 0.00 0.00 4.95
626 1090 5.640158 TCACTTTTTCTAGAGACCCCAAA 57.360 39.130 0.00 0.00 0.00 3.28
634 1098 4.175962 TCTAGAGACCCCAAAACCATCTT 58.824 43.478 0.00 0.00 0.00 2.40
670 1210 0.607489 GCATTCACAGTGACCTGGCT 60.607 55.000 1.52 0.00 43.36 4.75
725 1265 7.409697 GTCACATGTTTATAAACGATCTGCAT 58.590 34.615 20.51 6.62 41.74 3.96
726 1266 7.584123 GTCACATGTTTATAAACGATCTGCATC 59.416 37.037 20.51 5.15 41.74 3.91
727 1267 7.279758 TCACATGTTTATAAACGATCTGCATCA 59.720 33.333 20.51 2.75 41.74 3.07
821 1361 3.436359 GCGGGTAGTTTCGTAATTTTCCA 59.564 43.478 0.00 0.00 0.00 3.53
932 1472 0.116541 TCCTTCCTTTCGAGACCCCT 59.883 55.000 0.00 0.00 0.00 4.79
1043 1584 4.108336 CTGTTCGGAGTGATCACATGTAG 58.892 47.826 27.02 13.23 0.00 2.74
1044 1585 2.860735 GTTCGGAGTGATCACATGTAGC 59.139 50.000 27.02 9.68 0.00 3.58
1045 1586 2.379005 TCGGAGTGATCACATGTAGCT 58.621 47.619 27.02 4.86 0.00 3.32
1046 1587 3.551846 TCGGAGTGATCACATGTAGCTA 58.448 45.455 27.02 0.00 0.00 3.32
1047 1588 3.565902 TCGGAGTGATCACATGTAGCTAG 59.434 47.826 27.02 8.10 0.00 3.42
1048 1589 3.648009 GGAGTGATCACATGTAGCTAGC 58.352 50.000 27.02 6.62 0.00 3.42
1103 1644 2.930826 TGACTGGAGTGGGAAGAAAC 57.069 50.000 0.00 0.00 0.00 2.78
1245 1786 3.955650 TTCAAAGGCTCGTAGTAGCTT 57.044 42.857 0.00 0.00 42.37 3.74
1326 1867 0.528470 GTGTTCTAGCTGCTCGTCCT 59.472 55.000 4.91 0.00 0.00 3.85
1383 1924 2.646719 CATATGCATGGCCGGTGC 59.353 61.111 22.20 22.20 42.81 5.01
1414 1955 0.673644 GCATGCCCACGTACACTCTT 60.674 55.000 6.36 0.00 0.00 2.85
1518 2063 7.675870 GCAAGTCAGCTGTTAGATCTATTTGTG 60.676 40.741 14.67 0.00 0.00 3.33
1566 2139 4.011023 ACGTATATCTTCCTCTCATCCCG 58.989 47.826 0.00 0.00 0.00 5.14
1688 2261 4.849813 ATATATGATGCAGGGCTTAGCA 57.150 40.909 6.53 0.00 45.92 3.49
1980 2557 1.202568 TCTGTGCTAGATTCGCATGGG 60.203 52.381 2.76 2.76 39.89 4.00
1995 2572 4.021456 TCGCATGGGTATATGGTTGTCTAG 60.021 45.833 9.86 0.00 0.00 2.43
2015 2592 9.268268 TGTCTAGTTGTCTTTGTCGAATAAATT 57.732 29.630 0.00 0.00 0.00 1.82
2050 2659 2.351726 GCTGCTAGTGTTAATTGACCGG 59.648 50.000 0.00 0.00 0.00 5.28
2073 2682 2.320781 TGAACTAGCTAGGCCATCTCC 58.679 52.381 24.35 5.17 0.00 3.71
2097 2706 2.316119 TATCGATCTGTGATGTCGCG 57.684 50.000 0.00 0.00 35.48 5.87
2192 2801 3.150848 TGCAGCTATGTGTCTCTTACG 57.849 47.619 0.00 0.00 0.00 3.18
2197 2812 6.038936 TGCAGCTATGTGTCTCTTACGTTATA 59.961 38.462 0.00 0.00 0.00 0.98
2199 2814 8.235226 GCAGCTATGTGTCTCTTACGTTATATA 58.765 37.037 0.00 0.00 0.00 0.86
2306 2922 5.554822 TCAAAGTATGACCCAAAATACGC 57.445 39.130 0.00 0.00 34.98 4.42
2342 2960 6.667661 ACGGAGAGTACCTATTTACTACCTT 58.332 40.000 0.00 0.00 32.17 3.50
2362 2980 6.301486 ACCTTCGTTTGGGTTTATTAGTCTT 58.699 36.000 0.00 0.00 30.80 3.01
2363 2981 6.206048 ACCTTCGTTTGGGTTTATTAGTCTTG 59.794 38.462 0.00 0.00 30.80 3.02
2366 2984 5.702209 TCGTTTGGGTTTATTAGTCTTGTCC 59.298 40.000 0.00 0.00 0.00 4.02
2372 2990 9.457436 TTGGGTTTATTAGTCTTGTCCTATTTC 57.543 33.333 0.00 0.00 0.00 2.17
2373 2991 8.607713 TGGGTTTATTAGTCTTGTCCTATTTCA 58.392 33.333 0.00 0.00 0.00 2.69
2429 3047 8.428186 AAAAGGCTAATGCATGTCATAATTTG 57.572 30.769 0.00 0.12 41.91 2.32
2430 3048 6.720112 AGGCTAATGCATGTCATAATTTGT 57.280 33.333 0.00 0.00 41.91 2.83
2444 3062 3.829886 AATTTGTCGCATCACATCGTT 57.170 38.095 0.00 0.00 0.00 3.85
2457 3075 7.096230 CGCATCACATCGTTTATGATAGTGTTA 60.096 37.037 0.00 0.00 39.07 2.41
2521 3140 2.125673 ATCACGCACGGTGCCTAC 60.126 61.111 26.00 0.40 46.56 3.18
2544 3163 6.707290 ACAACAAACTGTATGGCATAGACTA 58.293 36.000 7.61 0.00 0.00 2.59
2558 3177 5.359756 GCATAGACTATCCATCACACACAA 58.640 41.667 0.00 0.00 0.00 3.33
2595 3219 1.993956 TGTGCAAAGTGGCCTAATGT 58.006 45.000 3.32 0.00 0.00 2.71
2601 3225 4.526262 TGCAAAGTGGCCTAATGTAAACAT 59.474 37.500 3.32 0.00 38.41 2.71
2642 3266 6.015265 TGTGTGTGATTGTTCATTGATCCAAT 60.015 34.615 10.27 10.27 34.04 3.16
2649 3273 7.754475 TGATTGTTCATTGATCCAATACGTTTG 59.246 33.333 0.00 0.00 32.35 2.93
2654 3278 7.384439 TCATTGATCCAATACGTTTGCTTTA 57.616 32.000 0.00 0.00 32.35 1.85
2657 3281 9.385902 CATTGATCCAATACGTTTGCTTTATAG 57.614 33.333 0.00 0.00 32.35 1.31
2679 3303 4.956075 AGAAAACTGTTTGGGTTGTCTGAT 59.044 37.500 6.53 0.00 39.11 2.90
2687 3311 1.623311 TGGGTTGTCTGATGTCATCGT 59.377 47.619 8.29 0.00 0.00 3.73
2728 3352 8.299570 CAATAACTGTCTGCAATAGAAAAACCT 58.700 33.333 0.00 0.00 37.12 3.50
2900 3530 5.891551 TCAGCACTCAGTTACACCATATAGA 59.108 40.000 0.00 0.00 0.00 1.98
2943 3579 7.226325 CCATTACACAACAACACCAAATTTCAT 59.774 33.333 0.00 0.00 0.00 2.57
2965 3601 9.926158 TTCATATGCAACATCTAAAACATTTGT 57.074 25.926 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.793250 GTCTCTTTCTTCCGTGCTGC 59.207 55.000 0.00 0.00 0.00 5.25
5 6 2.230266 GAGAGTCTCTTTCTTCCGTGCT 59.770 50.000 13.17 0.00 0.00 4.40
6 7 2.601804 GAGAGTCTCTTTCTTCCGTGC 58.398 52.381 13.17 0.00 0.00 5.34
7 8 2.226912 ACGAGAGTCTCTTTCTTCCGTG 59.773 50.000 17.91 1.13 44.19 4.94
8 9 2.506444 ACGAGAGTCTCTTTCTTCCGT 58.494 47.619 17.91 5.06 44.19 4.69
22 23 3.258622 AGGTCCTAAACTTCCAACGAGAG 59.741 47.826 0.00 0.00 0.00 3.20
23 24 3.006537 CAGGTCCTAAACTTCCAACGAGA 59.993 47.826 0.00 0.00 0.00 4.04
24 25 3.006537 TCAGGTCCTAAACTTCCAACGAG 59.993 47.826 0.00 0.00 0.00 4.18
25 26 2.967201 TCAGGTCCTAAACTTCCAACGA 59.033 45.455 0.00 0.00 0.00 3.85
26 27 3.244112 ACTCAGGTCCTAAACTTCCAACG 60.244 47.826 0.00 0.00 0.00 4.10
27 28 4.202326 TGACTCAGGTCCTAAACTTCCAAC 60.202 45.833 0.00 0.00 41.47 3.77
28 29 3.971305 TGACTCAGGTCCTAAACTTCCAA 59.029 43.478 0.00 0.00 41.47 3.53
29 30 3.578716 CTGACTCAGGTCCTAAACTTCCA 59.421 47.826 0.00 0.00 41.47 3.53
30 31 3.055747 CCTGACTCAGGTCCTAAACTTCC 60.056 52.174 16.18 0.00 45.82 3.46
31 32 4.195225 CCTGACTCAGGTCCTAAACTTC 57.805 50.000 16.18 0.00 45.82 3.01
43 44 1.230635 CCCGTTTGTGCCTGACTCAG 61.231 60.000 0.00 0.00 0.00 3.35
44 45 1.227823 CCCGTTTGTGCCTGACTCA 60.228 57.895 0.00 0.00 0.00 3.41
45 46 0.534203 TTCCCGTTTGTGCCTGACTC 60.534 55.000 0.00 0.00 0.00 3.36
46 47 0.110486 ATTCCCGTTTGTGCCTGACT 59.890 50.000 0.00 0.00 0.00 3.41
47 48 0.521735 GATTCCCGTTTGTGCCTGAC 59.478 55.000 0.00 0.00 0.00 3.51
48 49 0.109532 TGATTCCCGTTTGTGCCTGA 59.890 50.000 0.00 0.00 0.00 3.86
49 50 0.958091 TTGATTCCCGTTTGTGCCTG 59.042 50.000 0.00 0.00 0.00 4.85
50 51 0.958822 GTTGATTCCCGTTTGTGCCT 59.041 50.000 0.00 0.00 0.00 4.75
51 52 0.038618 GGTTGATTCCCGTTTGTGCC 60.039 55.000 0.00 0.00 0.00 5.01
52 53 0.038618 GGGTTGATTCCCGTTTGTGC 60.039 55.000 0.00 0.00 37.93 4.57
60 61 2.054453 GCTGCTGGGGTTGATTCCC 61.054 63.158 0.00 0.00 46.31 3.97
61 62 2.054453 GGCTGCTGGGGTTGATTCC 61.054 63.158 0.00 0.00 0.00 3.01
62 63 1.304381 TGGCTGCTGGGGTTGATTC 60.304 57.895 0.00 0.00 0.00 2.52
63 64 1.607467 GTGGCTGCTGGGGTTGATT 60.607 57.895 0.00 0.00 0.00 2.57
64 65 2.036256 GTGGCTGCTGGGGTTGAT 59.964 61.111 0.00 0.00 0.00 2.57
65 66 2.580155 TTTGTGGCTGCTGGGGTTGA 62.580 55.000 0.00 0.00 0.00 3.18
66 67 2.091102 CTTTGTGGCTGCTGGGGTTG 62.091 60.000 0.00 0.00 0.00 3.77
67 68 1.833934 CTTTGTGGCTGCTGGGGTT 60.834 57.895 0.00 0.00 0.00 4.11
68 69 2.203538 CTTTGTGGCTGCTGGGGT 60.204 61.111 0.00 0.00 0.00 4.95
69 70 2.993264 CCTTTGTGGCTGCTGGGG 60.993 66.667 0.00 0.00 0.00 4.96
70 71 2.993264 CCCTTTGTGGCTGCTGGG 60.993 66.667 0.00 0.00 0.00 4.45
71 72 1.114722 TTTCCCTTTGTGGCTGCTGG 61.115 55.000 0.00 0.00 0.00 4.85
72 73 0.752054 TTTTCCCTTTGTGGCTGCTG 59.248 50.000 0.00 0.00 0.00 4.41
73 74 1.494960 TTTTTCCCTTTGTGGCTGCT 58.505 45.000 0.00 0.00 0.00 4.24
91 92 9.403583 TGTTTTCTACAGTAAGTTCCTTCATTT 57.596 29.630 0.00 0.00 31.68 2.32
92 93 8.974060 TGTTTTCTACAGTAAGTTCCTTCATT 57.026 30.769 0.00 0.00 31.68 2.57
93 94 8.974060 TTGTTTTCTACAGTAAGTTCCTTCAT 57.026 30.769 0.00 0.00 38.19 2.57
94 95 8.671028 GTTTGTTTTCTACAGTAAGTTCCTTCA 58.329 33.333 0.00 0.00 38.19 3.02
95 96 8.890718 AGTTTGTTTTCTACAGTAAGTTCCTTC 58.109 33.333 0.00 0.00 38.19 3.46
96 97 8.803397 AGTTTGTTTTCTACAGTAAGTTCCTT 57.197 30.769 0.00 0.00 38.19 3.36
97 98 8.674607 CAAGTTTGTTTTCTACAGTAAGTTCCT 58.325 33.333 0.00 0.00 38.19 3.36
98 99 7.913821 CCAAGTTTGTTTTCTACAGTAAGTTCC 59.086 37.037 0.00 0.00 38.19 3.62
99 100 7.431376 GCCAAGTTTGTTTTCTACAGTAAGTTC 59.569 37.037 0.00 0.00 38.19 3.01
100 101 7.255569 GCCAAGTTTGTTTTCTACAGTAAGTT 58.744 34.615 0.00 0.00 38.19 2.66
101 102 6.183360 GGCCAAGTTTGTTTTCTACAGTAAGT 60.183 38.462 0.00 0.00 38.19 2.24
102 103 6.183360 TGGCCAAGTTTGTTTTCTACAGTAAG 60.183 38.462 0.61 0.00 38.19 2.34
103 104 5.652891 TGGCCAAGTTTGTTTTCTACAGTAA 59.347 36.000 0.61 0.00 38.19 2.24
104 105 5.194432 TGGCCAAGTTTGTTTTCTACAGTA 58.806 37.500 0.61 0.00 38.19 2.74
105 106 4.020543 TGGCCAAGTTTGTTTTCTACAGT 58.979 39.130 0.61 0.00 38.19 3.55
106 107 4.647424 TGGCCAAGTTTGTTTTCTACAG 57.353 40.909 0.61 0.00 38.19 2.74
107 108 4.202202 CCATGGCCAAGTTTGTTTTCTACA 60.202 41.667 10.96 0.00 34.12 2.74
108 109 4.306600 CCATGGCCAAGTTTGTTTTCTAC 58.693 43.478 10.96 0.00 0.00 2.59
109 110 3.244044 GCCATGGCCAAGTTTGTTTTCTA 60.244 43.478 27.24 0.00 34.56 2.10
110 111 2.485302 GCCATGGCCAAGTTTGTTTTCT 60.485 45.455 27.24 0.00 34.56 2.52
111 112 1.872952 GCCATGGCCAAGTTTGTTTTC 59.127 47.619 27.24 0.00 34.56 2.29
112 113 1.211457 TGCCATGGCCAAGTTTGTTTT 59.789 42.857 33.44 0.00 41.09 2.43
113 114 0.835941 TGCCATGGCCAAGTTTGTTT 59.164 45.000 33.44 0.00 41.09 2.83
114 115 0.393820 CTGCCATGGCCAAGTTTGTT 59.606 50.000 33.44 0.00 41.09 2.83
115 116 2.051941 CTGCCATGGCCAAGTTTGT 58.948 52.632 33.44 0.00 41.09 2.83
116 117 1.375013 GCTGCCATGGCCAAGTTTG 60.375 57.895 33.44 14.88 41.09 2.93
117 118 1.409251 TTGCTGCCATGGCCAAGTTT 61.409 50.000 33.44 0.00 41.09 2.66
118 119 1.196104 ATTGCTGCCATGGCCAAGTT 61.196 50.000 33.44 14.13 41.09 2.66
119 120 1.610554 GATTGCTGCCATGGCCAAGT 61.611 55.000 33.44 18.68 41.09 3.16
120 121 1.143183 GATTGCTGCCATGGCCAAG 59.857 57.895 33.44 25.05 41.09 3.61
121 122 2.360767 GGATTGCTGCCATGGCCAA 61.361 57.895 33.44 28.57 41.09 4.52
122 123 2.760799 GGATTGCTGCCATGGCCA 60.761 61.111 33.44 22.10 41.09 5.36
123 124 3.543641 GGGATTGCTGCCATGGCC 61.544 66.667 33.44 19.61 41.09 5.36
124 125 2.443390 AGGGATTGCTGCCATGGC 60.443 61.111 30.54 30.54 42.35 4.40
125 126 3.533720 CAGGGATTGCTGCCATGG 58.466 61.111 7.63 7.63 34.74 3.66
134 135 2.890311 AGAGAGACGATAGCAGGGATTG 59.110 50.000 0.00 0.00 42.67 2.67
135 136 2.890311 CAGAGAGACGATAGCAGGGATT 59.110 50.000 0.00 0.00 42.67 3.01
136 137 2.107378 TCAGAGAGACGATAGCAGGGAT 59.893 50.000 0.00 0.00 42.67 3.85
137 138 1.490910 TCAGAGAGACGATAGCAGGGA 59.509 52.381 0.00 0.00 42.67 4.20
138 139 1.974265 TCAGAGAGACGATAGCAGGG 58.026 55.000 0.00 0.00 42.67 4.45
139 140 2.228582 CCATCAGAGAGACGATAGCAGG 59.771 54.545 0.00 0.00 42.67 4.85
140 141 2.351641 GCCATCAGAGAGACGATAGCAG 60.352 54.545 0.00 0.00 42.67 4.24
141 142 1.611006 GCCATCAGAGAGACGATAGCA 59.389 52.381 0.00 0.00 42.67 3.49
142 143 1.067915 GGCCATCAGAGAGACGATAGC 60.068 57.143 0.00 0.00 42.67 2.97
143 144 2.513753 AGGCCATCAGAGAGACGATAG 58.486 52.381 5.01 0.00 46.19 2.08
144 145 2.666272 AGGCCATCAGAGAGACGATA 57.334 50.000 5.01 0.00 0.00 2.92
145 146 2.235016 GTAGGCCATCAGAGAGACGAT 58.765 52.381 5.01 0.00 0.00 3.73
146 147 1.064685 TGTAGGCCATCAGAGAGACGA 60.065 52.381 5.01 0.00 0.00 4.20
147 148 1.066303 GTGTAGGCCATCAGAGAGACG 59.934 57.143 5.01 0.00 0.00 4.18
148 149 1.066303 CGTGTAGGCCATCAGAGAGAC 59.934 57.143 5.01 0.00 0.00 3.36
149 150 1.393603 CGTGTAGGCCATCAGAGAGA 58.606 55.000 5.01 0.00 0.00 3.10
150 151 0.249238 GCGTGTAGGCCATCAGAGAG 60.249 60.000 5.01 0.00 0.00 3.20
151 152 1.816537 GCGTGTAGGCCATCAGAGA 59.183 57.895 5.01 0.00 0.00 3.10
152 153 4.427394 GCGTGTAGGCCATCAGAG 57.573 61.111 5.01 2.06 0.00 3.35
160 161 1.268352 CTCTAGATCTGGCGTGTAGGC 59.732 57.143 5.18 0.00 46.95 3.93
161 162 1.883275 CCTCTAGATCTGGCGTGTAGG 59.117 57.143 5.18 0.67 0.00 3.18
162 163 1.883275 CCCTCTAGATCTGGCGTGTAG 59.117 57.143 5.18 0.00 0.00 2.74
163 164 1.493446 TCCCTCTAGATCTGGCGTGTA 59.507 52.381 5.18 0.00 0.00 2.90
164 165 0.259065 TCCCTCTAGATCTGGCGTGT 59.741 55.000 5.18 0.00 0.00 4.49
165 166 0.958091 CTCCCTCTAGATCTGGCGTG 59.042 60.000 5.18 0.00 0.00 5.34
166 167 0.847373 TCTCCCTCTAGATCTGGCGT 59.153 55.000 5.18 0.00 0.00 5.68
167 168 1.988293 TTCTCCCTCTAGATCTGGCG 58.012 55.000 5.18 0.00 0.00 5.69
168 169 4.221924 GGTATTTCTCCCTCTAGATCTGGC 59.778 50.000 5.18 0.00 0.00 4.85
169 170 4.775253 GGGTATTTCTCCCTCTAGATCTGG 59.225 50.000 5.18 1.65 41.58 3.86
170 171 5.993748 GGGTATTTCTCCCTCTAGATCTG 57.006 47.826 5.18 0.00 41.58 2.90
180 181 4.642466 CCTTGGATAGGGTATTTCTCCC 57.358 50.000 0.00 0.00 44.90 4.30
191 192 0.475906 CTTGCCTCCCCTTGGATAGG 59.524 60.000 3.75 3.75 40.80 2.57
192 193 1.419387 CTCTTGCCTCCCCTTGGATAG 59.581 57.143 0.00 0.00 40.80 2.08
193 194 1.511613 CTCTTGCCTCCCCTTGGATA 58.488 55.000 0.00 0.00 40.80 2.59
194 195 1.284841 CCTCTTGCCTCCCCTTGGAT 61.285 60.000 0.00 0.00 40.80 3.41
195 196 1.925455 CCTCTTGCCTCCCCTTGGA 60.925 63.158 0.00 0.00 38.75 3.53
196 197 2.679716 CCTCTTGCCTCCCCTTGG 59.320 66.667 0.00 0.00 0.00 3.61
197 198 1.284841 ATCCCTCTTGCCTCCCCTTG 61.285 60.000 0.00 0.00 0.00 3.61
198 199 0.990818 GATCCCTCTTGCCTCCCCTT 60.991 60.000 0.00 0.00 0.00 3.95
199 200 1.385206 GATCCCTCTTGCCTCCCCT 60.385 63.158 0.00 0.00 0.00 4.79
200 201 2.456443 GGATCCCTCTTGCCTCCCC 61.456 68.421 0.00 0.00 0.00 4.81
201 202 1.385206 AGGATCCCTCTTGCCTCCC 60.385 63.158 8.55 0.00 0.00 4.30
202 203 2.141312 GAGGATCCCTCTTGCCTCC 58.859 63.158 8.55 0.00 46.41 4.30
210 211 1.598882 GATTTTGGCGAGGATCCCTC 58.401 55.000 8.55 4.64 46.44 4.30
211 212 0.179045 CGATTTTGGCGAGGATCCCT 60.179 55.000 8.55 0.00 36.03 4.20
212 213 0.179056 TCGATTTTGGCGAGGATCCC 60.179 55.000 8.55 0.00 33.33 3.85
213 214 0.938008 GTCGATTTTGGCGAGGATCC 59.062 55.000 2.48 2.48 38.59 3.36
214 215 1.941325 AGTCGATTTTGGCGAGGATC 58.059 50.000 0.00 0.00 38.59 3.36
215 216 2.280628 GAAGTCGATTTTGGCGAGGAT 58.719 47.619 0.00 0.00 38.59 3.24
216 217 1.001520 TGAAGTCGATTTTGGCGAGGA 59.998 47.619 0.00 0.00 38.59 3.71
217 218 1.394917 CTGAAGTCGATTTTGGCGAGG 59.605 52.381 0.00 0.00 38.59 4.63
218 219 2.069273 ACTGAAGTCGATTTTGGCGAG 58.931 47.619 0.00 0.00 38.59 5.03
219 220 1.798223 CACTGAAGTCGATTTTGGCGA 59.202 47.619 0.00 0.00 35.08 5.54
220 221 1.135972 CCACTGAAGTCGATTTTGGCG 60.136 52.381 0.00 0.00 0.00 5.69
221 222 1.880027 ACCACTGAAGTCGATTTTGGC 59.120 47.619 9.16 0.00 0.00 4.52
222 223 3.813529 GACCACTGAAGTCGATTTTGG 57.186 47.619 7.99 7.99 0.00 3.28
230 231 2.432628 CCGGCGACCACTGAAGTC 60.433 66.667 9.30 0.00 0.00 3.01
231 232 4.003788 CCCGGCGACCACTGAAGT 62.004 66.667 9.30 0.00 0.00 3.01
232 233 4.760047 CCCCGGCGACCACTGAAG 62.760 72.222 9.30 0.00 0.00 3.02
235 236 4.323477 TTTCCCCGGCGACCACTG 62.323 66.667 9.30 0.00 0.00 3.66
236 237 4.016706 CTTTCCCCGGCGACCACT 62.017 66.667 9.30 0.00 0.00 4.00
237 238 1.963464 TATCTTTCCCCGGCGACCAC 61.963 60.000 9.30 0.00 0.00 4.16
238 239 1.682451 CTATCTTTCCCCGGCGACCA 61.682 60.000 9.30 0.00 0.00 4.02
239 240 1.069258 CTATCTTTCCCCGGCGACC 59.931 63.158 9.30 0.00 0.00 4.79
240 241 0.032267 CTCTATCTTTCCCCGGCGAC 59.968 60.000 9.30 0.00 0.00 5.19
241 242 1.113517 CCTCTATCTTTCCCCGGCGA 61.114 60.000 9.30 0.00 0.00 5.54
242 243 1.113517 TCCTCTATCTTTCCCCGGCG 61.114 60.000 0.00 0.00 0.00 6.46
243 244 0.682292 CTCCTCTATCTTTCCCCGGC 59.318 60.000 0.00 0.00 0.00 6.13
244 245 2.158445 TCTCTCCTCTATCTTTCCCCGG 60.158 54.545 0.00 0.00 0.00 5.73
245 246 3.153919 CTCTCTCCTCTATCTTTCCCCG 58.846 54.545 0.00 0.00 0.00 5.73
246 247 3.506398 CCTCTCTCCTCTATCTTTCCCC 58.494 54.545 0.00 0.00 0.00 4.81
247 248 2.897326 GCCTCTCTCCTCTATCTTTCCC 59.103 54.545 0.00 0.00 0.00 3.97
248 249 3.826729 GAGCCTCTCTCCTCTATCTTTCC 59.173 52.174 0.00 0.00 35.77 3.13
249 250 4.278419 GTGAGCCTCTCTCCTCTATCTTTC 59.722 50.000 0.00 0.00 41.18 2.62
250 251 4.215109 GTGAGCCTCTCTCCTCTATCTTT 58.785 47.826 0.00 0.00 41.18 2.52
251 252 3.436470 GGTGAGCCTCTCTCCTCTATCTT 60.436 52.174 7.47 0.00 39.99 2.40
252 253 2.108250 GGTGAGCCTCTCTCCTCTATCT 59.892 54.545 7.47 0.00 39.99 1.98
253 254 2.514803 GGTGAGCCTCTCTCCTCTATC 58.485 57.143 7.47 0.00 39.99 2.08
254 255 1.202879 CGGTGAGCCTCTCTCCTCTAT 60.203 57.143 11.63 0.00 40.68 1.98
255 256 0.181587 CGGTGAGCCTCTCTCCTCTA 59.818 60.000 11.63 0.00 40.68 2.43
256 257 1.077068 CGGTGAGCCTCTCTCCTCT 60.077 63.158 11.63 0.00 40.68 3.69
257 258 2.781158 GCGGTGAGCCTCTCTCCTC 61.781 68.421 11.63 2.29 40.68 3.71
258 259 2.757917 GCGGTGAGCCTCTCTCCT 60.758 66.667 11.63 0.00 40.68 3.69
268 269 1.369091 CCCGAATTCCTTGCGGTGAG 61.369 60.000 0.00 0.00 43.35 3.51
269 270 1.376683 CCCGAATTCCTTGCGGTGA 60.377 57.895 0.00 0.00 43.35 4.02
270 271 1.369091 CTCCCGAATTCCTTGCGGTG 61.369 60.000 0.00 0.00 43.35 4.94
271 272 1.078426 CTCCCGAATTCCTTGCGGT 60.078 57.895 0.00 0.00 43.35 5.68
272 273 1.819632 CCTCCCGAATTCCTTGCGG 60.820 63.158 0.00 0.00 44.42 5.69
273 274 1.819632 CCCTCCCGAATTCCTTGCG 60.820 63.158 0.00 0.00 0.00 4.85
274 275 1.453928 CCCCTCCCGAATTCCTTGC 60.454 63.158 0.00 0.00 0.00 4.01
275 276 0.846693 ATCCCCTCCCGAATTCCTTG 59.153 55.000 0.00 0.00 0.00 3.61
276 277 1.495148 GAATCCCCTCCCGAATTCCTT 59.505 52.381 0.00 0.00 0.00 3.36
277 278 1.141185 GAATCCCCTCCCGAATTCCT 58.859 55.000 0.00 0.00 0.00 3.36
278 279 0.110678 GGAATCCCCTCCCGAATTCC 59.889 60.000 0.00 0.00 0.00 3.01
279 280 3.727738 GGAATCCCCTCCCGAATTC 57.272 57.895 0.00 0.00 0.00 2.17
290 291 2.109181 CGAGCCTTCGGGAATCCC 59.891 66.667 8.64 8.64 43.05 3.85
299 300 1.538419 CGGGGAAGATAACGAGCCTTC 60.538 57.143 0.00 0.00 36.48 3.46
300 301 0.464452 CGGGGAAGATAACGAGCCTT 59.536 55.000 0.00 0.00 0.00 4.35
301 302 0.396695 TCGGGGAAGATAACGAGCCT 60.397 55.000 0.00 0.00 0.00 4.58
302 303 0.032267 CTCGGGGAAGATAACGAGCC 59.968 60.000 0.00 0.00 44.90 4.70
303 304 3.571741 CTCGGGGAAGATAACGAGC 57.428 57.895 0.00 0.00 44.90 5.03
305 306 2.723322 TCTCTCGGGGAAGATAACGA 57.277 50.000 0.00 0.00 0.00 3.85
306 307 2.034812 CCTTCTCTCGGGGAAGATAACG 59.965 54.545 13.26 0.00 41.71 3.18
307 308 3.297736 TCCTTCTCTCGGGGAAGATAAC 58.702 50.000 13.26 0.00 41.71 1.89
308 309 3.204606 TCTCCTTCTCTCGGGGAAGATAA 59.795 47.826 13.26 1.14 41.71 1.75
309 310 2.784095 TCTCCTTCTCTCGGGGAAGATA 59.216 50.000 13.26 3.04 41.71 1.98
310 311 1.571457 TCTCCTTCTCTCGGGGAAGAT 59.429 52.381 13.26 0.00 41.71 2.40
311 312 1.000496 TCTCCTTCTCTCGGGGAAGA 59.000 55.000 13.26 0.00 41.71 2.87
312 313 1.853963 TTCTCCTTCTCTCGGGGAAG 58.146 55.000 6.56 6.56 36.13 3.46
313 314 2.023888 AGATTCTCCTTCTCTCGGGGAA 60.024 50.000 0.00 0.00 44.64 3.97
314 315 1.571457 AGATTCTCCTTCTCTCGGGGA 59.429 52.381 0.00 0.00 0.00 4.81
315 316 1.960689 GAGATTCTCCTTCTCTCGGGG 59.039 57.143 1.97 0.00 37.28 5.73
316 317 1.960689 GGAGATTCTCCTTCTCTCGGG 59.039 57.143 23.09 0.00 46.41 5.14
327 328 3.305398 ACAGAACACGTGGAGATTCTC 57.695 47.619 21.57 5.03 30.35 2.87
328 329 3.753294 AACAGAACACGTGGAGATTCT 57.247 42.857 21.57 16.13 32.02 2.40
329 330 3.807622 TGAAACAGAACACGTGGAGATTC 59.192 43.478 21.57 14.05 0.00 2.52
330 331 3.804036 TGAAACAGAACACGTGGAGATT 58.196 40.909 21.57 4.46 0.00 2.40
331 332 3.393800 CTGAAACAGAACACGTGGAGAT 58.606 45.455 21.57 2.56 32.44 2.75
332 333 2.483013 CCTGAAACAGAACACGTGGAGA 60.483 50.000 21.57 0.00 32.44 3.71
333 334 1.867233 CCTGAAACAGAACACGTGGAG 59.133 52.381 21.57 8.78 32.44 3.86
334 335 1.474320 CCCTGAAACAGAACACGTGGA 60.474 52.381 21.57 0.00 32.44 4.02
335 336 0.944386 CCCTGAAACAGAACACGTGG 59.056 55.000 21.57 4.06 32.44 4.94
336 337 1.597663 GTCCCTGAAACAGAACACGTG 59.402 52.381 15.48 15.48 32.44 4.49
337 338 1.208535 TGTCCCTGAAACAGAACACGT 59.791 47.619 0.00 0.00 32.44 4.49
338 339 1.948104 TGTCCCTGAAACAGAACACG 58.052 50.000 0.00 0.00 32.44 4.49
339 340 3.058914 CGATTGTCCCTGAAACAGAACAC 60.059 47.826 0.00 0.00 32.44 3.32
340 341 3.138304 CGATTGTCCCTGAAACAGAACA 58.862 45.455 0.00 0.00 32.44 3.18
341 342 2.484264 CCGATTGTCCCTGAAACAGAAC 59.516 50.000 0.00 0.00 32.44 3.01
342 343 2.552155 CCCGATTGTCCCTGAAACAGAA 60.552 50.000 0.00 0.00 32.44 3.02
343 344 1.003118 CCCGATTGTCCCTGAAACAGA 59.997 52.381 0.00 0.00 32.44 3.41
344 345 1.453155 CCCGATTGTCCCTGAAACAG 58.547 55.000 0.00 0.00 0.00 3.16
345 346 0.608035 GCCCGATTGTCCCTGAAACA 60.608 55.000 0.00 0.00 0.00 2.83
346 347 0.608035 TGCCCGATTGTCCCTGAAAC 60.608 55.000 0.00 0.00 0.00 2.78
347 348 0.608035 GTGCCCGATTGTCCCTGAAA 60.608 55.000 0.00 0.00 0.00 2.69
348 349 1.002624 GTGCCCGATTGTCCCTGAA 60.003 57.895 0.00 0.00 0.00 3.02
349 350 1.773856 TTGTGCCCGATTGTCCCTGA 61.774 55.000 0.00 0.00 0.00 3.86
350 351 0.680921 ATTGTGCCCGATTGTCCCTG 60.681 55.000 0.00 0.00 0.00 4.45
351 352 0.680921 CATTGTGCCCGATTGTCCCT 60.681 55.000 0.00 0.00 0.00 4.20
352 353 0.679640 TCATTGTGCCCGATTGTCCC 60.680 55.000 0.00 0.00 0.00 4.46
353 354 0.734889 CTCATTGTGCCCGATTGTCC 59.265 55.000 0.00 0.00 0.00 4.02
354 355 1.398390 GACTCATTGTGCCCGATTGTC 59.602 52.381 0.00 0.00 0.00 3.18
355 356 1.271325 TGACTCATTGTGCCCGATTGT 60.271 47.619 0.00 0.00 0.00 2.71
356 357 1.452110 TGACTCATTGTGCCCGATTG 58.548 50.000 0.00 0.00 0.00 2.67
357 358 2.092753 AGATGACTCATTGTGCCCGATT 60.093 45.455 0.00 0.00 0.00 3.34
358 359 1.487976 AGATGACTCATTGTGCCCGAT 59.512 47.619 0.00 0.00 0.00 4.18
359 360 0.904649 AGATGACTCATTGTGCCCGA 59.095 50.000 0.00 0.00 0.00 5.14
360 361 1.293924 GAGATGACTCATTGTGCCCG 58.706 55.000 0.00 0.00 42.21 6.13
361 362 2.408271 TGAGATGACTCATTGTGCCC 57.592 50.000 0.00 0.00 46.55 5.36
363 364 6.950630 TGAGGCTGAGATGACTCATTGTGC 62.951 50.000 0.00 0.00 46.17 4.57
364 365 3.369157 TGAGGCTGAGATGACTCATTGTG 60.369 47.826 0.00 0.00 46.17 3.33
365 366 2.836372 TGAGGCTGAGATGACTCATTGT 59.164 45.455 0.00 0.00 46.17 2.71
366 367 3.538634 TGAGGCTGAGATGACTCATTG 57.461 47.619 0.00 0.00 46.17 2.82
370 371 3.540314 AATGTGAGGCTGAGATGACTC 57.460 47.619 0.00 0.00 42.25 3.36
371 372 3.262660 TGAAATGTGAGGCTGAGATGACT 59.737 43.478 0.00 0.00 0.00 3.41
372 373 3.603532 TGAAATGTGAGGCTGAGATGAC 58.396 45.455 0.00 0.00 0.00 3.06
373 374 3.516700 TCTGAAATGTGAGGCTGAGATGA 59.483 43.478 0.00 0.00 0.00 2.92
374 375 3.870274 TCTGAAATGTGAGGCTGAGATG 58.130 45.455 0.00 0.00 0.00 2.90
375 376 4.444591 GGATCTGAAATGTGAGGCTGAGAT 60.445 45.833 0.00 0.00 0.00 2.75
376 377 3.118482 GGATCTGAAATGTGAGGCTGAGA 60.118 47.826 0.00 0.00 0.00 3.27
377 378 3.204526 GGATCTGAAATGTGAGGCTGAG 58.795 50.000 0.00 0.00 0.00 3.35
378 379 2.419159 CGGATCTGAAATGTGAGGCTGA 60.419 50.000 0.00 0.00 0.00 4.26
379 380 1.938577 CGGATCTGAAATGTGAGGCTG 59.061 52.381 0.00 0.00 0.00 4.85
380 381 1.833630 TCGGATCTGAAATGTGAGGCT 59.166 47.619 0.39 0.00 0.00 4.58
381 382 1.936547 GTCGGATCTGAAATGTGAGGC 59.063 52.381 5.62 0.00 0.00 4.70
382 383 2.196749 CGTCGGATCTGAAATGTGAGG 58.803 52.381 5.62 0.00 0.00 3.86
383 384 2.196749 CCGTCGGATCTGAAATGTGAG 58.803 52.381 4.91 0.00 0.00 3.51
384 385 1.548719 ACCGTCGGATCTGAAATGTGA 59.451 47.619 20.51 0.00 0.00 3.58
385 386 1.660607 CACCGTCGGATCTGAAATGTG 59.339 52.381 20.51 9.96 0.00 3.21
386 387 1.275291 ACACCGTCGGATCTGAAATGT 59.725 47.619 20.51 6.15 0.00 2.71
387 388 2.010145 ACACCGTCGGATCTGAAATG 57.990 50.000 20.51 5.43 0.00 2.32
388 389 3.021695 TCTACACCGTCGGATCTGAAAT 58.978 45.455 20.51 0.00 0.00 2.17
389 390 2.439409 TCTACACCGTCGGATCTGAAA 58.561 47.619 20.51 0.00 0.00 2.69
390 391 2.118313 TCTACACCGTCGGATCTGAA 57.882 50.000 20.51 0.00 0.00 3.02
391 392 1.947456 CATCTACACCGTCGGATCTGA 59.053 52.381 20.51 10.90 0.00 3.27
392 393 1.947456 TCATCTACACCGTCGGATCTG 59.053 52.381 20.51 8.68 0.00 2.90
393 394 2.158798 TCTCATCTACACCGTCGGATCT 60.159 50.000 20.51 1.64 0.00 2.75
394 395 2.219458 TCTCATCTACACCGTCGGATC 58.781 52.381 20.51 0.00 0.00 3.36
395 396 2.343484 TCTCATCTACACCGTCGGAT 57.657 50.000 20.51 8.21 0.00 4.18
396 397 1.947456 CATCTCATCTACACCGTCGGA 59.053 52.381 20.51 0.00 0.00 4.55
397 398 1.947456 TCATCTCATCTACACCGTCGG 59.053 52.381 10.48 10.48 0.00 4.79
398 399 3.549019 CCTTCATCTCATCTACACCGTCG 60.549 52.174 0.00 0.00 0.00 5.12
399 400 3.797184 GCCTTCATCTCATCTACACCGTC 60.797 52.174 0.00 0.00 0.00 4.79
400 401 2.101582 GCCTTCATCTCATCTACACCGT 59.898 50.000 0.00 0.00 0.00 4.83
401 402 2.101415 TGCCTTCATCTCATCTACACCG 59.899 50.000 0.00 0.00 0.00 4.94
402 403 3.494048 CCTGCCTTCATCTCATCTACACC 60.494 52.174 0.00 0.00 0.00 4.16
403 404 3.726607 CCTGCCTTCATCTCATCTACAC 58.273 50.000 0.00 0.00 0.00 2.90
404 405 2.103771 GCCTGCCTTCATCTCATCTACA 59.896 50.000 0.00 0.00 0.00 2.74
405 406 2.103771 TGCCTGCCTTCATCTCATCTAC 59.896 50.000 0.00 0.00 0.00 2.59
406 407 2.103771 GTGCCTGCCTTCATCTCATCTA 59.896 50.000 0.00 0.00 0.00 1.98
407 408 1.134159 GTGCCTGCCTTCATCTCATCT 60.134 52.381 0.00 0.00 0.00 2.90
408 409 1.307097 GTGCCTGCCTTCATCTCATC 58.693 55.000 0.00 0.00 0.00 2.92
409 410 0.463295 CGTGCCTGCCTTCATCTCAT 60.463 55.000 0.00 0.00 0.00 2.90
410 411 1.078918 CGTGCCTGCCTTCATCTCA 60.079 57.895 0.00 0.00 0.00 3.27
411 412 2.467826 GCGTGCCTGCCTTCATCTC 61.468 63.158 0.00 0.00 0.00 2.75
412 413 2.437359 GCGTGCCTGCCTTCATCT 60.437 61.111 0.00 0.00 0.00 2.90
421 422 3.434319 GTGGTGATGGCGTGCCTG 61.434 66.667 12.84 0.00 36.94 4.85
422 423 4.722700 GGTGGTGATGGCGTGCCT 62.723 66.667 12.84 0.00 36.94 4.75
424 425 2.983030 TTGGTGGTGATGGCGTGC 60.983 61.111 0.00 0.00 0.00 5.34
425 426 1.577328 GAGTTGGTGGTGATGGCGTG 61.577 60.000 0.00 0.00 0.00 5.34
426 427 1.302511 GAGTTGGTGGTGATGGCGT 60.303 57.895 0.00 0.00 0.00 5.68
427 428 2.390599 CGAGTTGGTGGTGATGGCG 61.391 63.158 0.00 0.00 0.00 5.69
428 429 2.690778 GCGAGTTGGTGGTGATGGC 61.691 63.158 0.00 0.00 0.00 4.40
429 430 0.606401 AAGCGAGTTGGTGGTGATGG 60.606 55.000 0.00 0.00 0.00 3.51
430 431 1.238439 AAAGCGAGTTGGTGGTGATG 58.762 50.000 0.00 0.00 0.00 3.07
431 432 1.981256 AAAAGCGAGTTGGTGGTGAT 58.019 45.000 0.00 0.00 0.00 3.06
432 433 1.757682 AAAAAGCGAGTTGGTGGTGA 58.242 45.000 0.00 0.00 0.00 4.02
507 508 8.007742 ACTCTTATACCTCTCACAATGGATAGT 58.992 37.037 0.00 0.00 0.00 2.12
508 509 8.415950 ACTCTTATACCTCTCACAATGGATAG 57.584 38.462 0.00 0.00 0.00 2.08
530 531 8.466617 TTCATAGGTGGAACTAGAGAATACTC 57.533 38.462 0.00 0.00 39.22 2.59
539 540 8.398665 GCTATTGTTTTTCATAGGTGGAACTAG 58.601 37.037 0.00 0.00 36.74 2.57
558 559 4.150897 ACCCATAATGTCACGCTATTGT 57.849 40.909 0.00 0.00 0.00 2.71
559 560 6.312918 GGTATACCCATAATGTCACGCTATTG 59.687 42.308 11.17 0.00 0.00 1.90
561 562 5.482526 TGGTATACCCATAATGTCACGCTAT 59.517 40.000 19.42 0.00 38.72 2.97
568 569 7.936847 TCTCATTGTTGGTATACCCATAATGTC 59.063 37.037 29.08 8.14 44.74 3.06
569 570 7.811282 TCTCATTGTTGGTATACCCATAATGT 58.189 34.615 29.08 8.37 44.74 2.71
571 572 8.157476 GTCTCTCATTGTTGGTATACCCATAAT 58.843 37.037 19.42 14.72 44.74 1.28
573 574 6.613679 TGTCTCTCATTGTTGGTATACCCATA 59.386 38.462 19.42 3.74 44.74 2.74
574 575 5.428457 TGTCTCTCATTGTTGGTATACCCAT 59.572 40.000 19.42 3.56 44.74 4.00
575 576 4.780554 TGTCTCTCATTGTTGGTATACCCA 59.219 41.667 19.42 5.40 43.27 4.51
577 578 7.865706 AAATGTCTCTCATTGTTGGTATACC 57.134 36.000 15.50 15.50 44.85 2.73
623 1087 4.332819 CGCCTAGTAGGAAAGATGGTTTTG 59.667 45.833 21.02 0.00 37.67 2.44
626 1090 3.105283 ACGCCTAGTAGGAAAGATGGTT 58.895 45.455 21.02 0.00 37.67 3.67
634 1098 0.323999 TGCTCCACGCCTAGTAGGAA 60.324 55.000 21.02 0.00 37.67 3.36
663 1203 0.107831 TTGAGCGTGTAAAGCCAGGT 59.892 50.000 0.00 0.00 44.61 4.00
670 1210 7.543172 AGTTAATTAGTCGATTGAGCGTGTAAA 59.457 33.333 0.00 0.00 0.00 2.01
867 1407 6.822676 TGGTACCGTAAAGAGAAAAAGACAAA 59.177 34.615 7.57 0.00 0.00 2.83
932 1472 5.339423 AAAGATGAAGGAAGGGAAAGGAA 57.661 39.130 0.00 0.00 0.00 3.36
1048 1589 4.079980 TCAGAGTGACCTAGCTAGCTAG 57.920 50.000 35.39 35.39 44.07 3.42
1103 1644 0.677098 AGCAGATCAACAGCAGCCTG 60.677 55.000 0.00 0.00 44.80 4.85
1290 1831 1.247567 CACCACCACCACCTTCATTC 58.752 55.000 0.00 0.00 0.00 2.67
1291 1832 0.555769 ACACCACCACCACCTTCATT 59.444 50.000 0.00 0.00 0.00 2.57
1292 1833 0.555769 AACACCACCACCACCTTCAT 59.444 50.000 0.00 0.00 0.00 2.57
1293 1834 0.106918 GAACACCACCACCACCTTCA 60.107 55.000 0.00 0.00 0.00 3.02
1326 1867 0.243907 CGAGAGTCCAAGGCGAGAAA 59.756 55.000 0.00 0.00 0.00 2.52
1518 2063 9.422681 TGTACTCCTATTTCCTATCCTATATGC 57.577 37.037 0.00 0.00 0.00 3.14
1545 2118 4.011023 ACGGGATGAGAGGAAGATATACG 58.989 47.826 0.00 0.00 0.00 3.06
1566 2139 7.061673 CGTACTACTATACATACTCACGGAGAC 59.938 44.444 7.76 0.00 33.32 3.36
1688 2261 1.353091 GTGGTCCTCCTTCTGGTCTT 58.647 55.000 0.00 0.00 34.23 3.01
1818 2391 3.680786 ACGAGCGCTGCACCTGTA 61.681 61.111 18.48 0.00 0.00 2.74
1899 2472 2.799371 CCGAGCCGTCACCTAGAC 59.201 66.667 0.00 0.00 44.02 2.59
1980 2557 8.773404 ACAAAGACAACTAGACAACCATATAC 57.227 34.615 0.00 0.00 0.00 1.47
1995 2572 5.344933 GCCCAATTTATTCGACAAAGACAAC 59.655 40.000 0.00 0.00 0.00 3.32
2015 2592 4.020617 CAGCCGGTCTTCTGCCCA 62.021 66.667 1.90 0.00 0.00 5.36
2028 2605 2.351726 CGGTCAATTAACACTAGCAGCC 59.648 50.000 0.00 0.00 0.00 4.85
2030 2607 2.936498 CCCGGTCAATTAACACTAGCAG 59.064 50.000 0.00 0.00 0.00 4.24
2050 2659 2.903135 AGATGGCCTAGCTAGTTCATCC 59.097 50.000 29.92 19.54 34.38 3.51
2073 2682 3.667726 CGACATCACAGATCGATAAGCTG 59.332 47.826 10.23 10.23 38.10 4.24
2097 2706 6.271159 AGGGATCAGAATCAATACTTAGACCC 59.729 42.308 0.00 0.00 33.21 4.46
2306 2922 1.831736 ACTCTCCGTTATTGGACCCTG 59.168 52.381 0.00 0.00 33.48 4.45
2342 2960 5.702209 GGACAAGACTAATAAACCCAAACGA 59.298 40.000 0.00 0.00 0.00 3.85
2362 2980 8.203485 AGTCAAAATTTGCTTTGAAATAGGACA 58.797 29.630 0.00 0.00 44.66 4.02
2363 2981 8.593492 AGTCAAAATTTGCTTTGAAATAGGAC 57.407 30.769 0.00 0.00 44.66 3.85
2390 3008 7.706179 GCATTAGCCTTTTTGCAGTCAAATATA 59.294 33.333 0.00 0.00 37.10 0.86
2401 3019 3.587923 TGACATGCATTAGCCTTTTTGC 58.412 40.909 0.00 0.00 41.13 3.68
2429 3047 4.715520 ATCATAAACGATGTGATGCGAC 57.284 40.909 0.00 0.00 38.33 5.19
2430 3048 5.402270 CACTATCATAAACGATGTGATGCGA 59.598 40.000 12.70 0.00 39.84 5.10
2521 3140 7.041780 GGATAGTCTATGCCATACAGTTTGTTG 60.042 40.741 0.00 0.00 0.00 3.33
2558 3177 7.798596 TTGCACAAACATTCCACATAAAAAT 57.201 28.000 0.00 0.00 0.00 1.82
2595 3219 6.039270 CACAACTTCCTCTGGACAAATGTTTA 59.961 38.462 0.00 0.00 0.00 2.01
2601 3225 3.278574 CACACAACTTCCTCTGGACAAA 58.721 45.455 0.00 0.00 0.00 2.83
2642 3266 9.440784 CAAACAGTTTTCTATAAAGCAAACGTA 57.559 29.630 0.00 0.00 41.82 3.57
2649 3273 7.207383 ACAACCCAAACAGTTTTCTATAAAGC 58.793 34.615 0.00 0.00 0.00 3.51
2654 3278 6.126409 TCAGACAACCCAAACAGTTTTCTAT 58.874 36.000 0.00 0.00 33.60 1.98
2657 3281 4.712122 TCAGACAACCCAAACAGTTTTC 57.288 40.909 0.00 0.00 0.00 2.29
2666 3290 2.038426 ACGATGACATCAGACAACCCAA 59.962 45.455 15.58 0.00 0.00 4.12
2679 3303 2.805671 GACAACATTGTGGACGATGACA 59.194 45.455 13.03 0.00 42.43 3.58
2687 3311 6.061441 ACAGTTATTGAGACAACATTGTGGA 58.939 36.000 1.07 0.00 42.43 4.02
2900 3530 7.454694 TGTGTAATGGGATGTCTAGCTATATGT 59.545 37.037 0.00 0.00 0.00 2.29
2912 3542 3.572255 GGTGTTGTTGTGTAATGGGATGT 59.428 43.478 0.00 0.00 0.00 3.06
2913 3543 3.571828 TGGTGTTGTTGTGTAATGGGATG 59.428 43.478 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.