Multiple sequence alignment - TraesCS7A01G255400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G255400 chr7A 100.000 5200 0 0 1 5200 243367940 243362741 0.000000e+00 9603.0
1 TraesCS7A01G255400 chr7A 77.924 607 95 33 2534 3123 150982738 150983322 4.990000e-90 342.0
2 TraesCS7A01G255400 chr7A 90.678 118 9 2 5083 5200 89977808 89977693 6.970000e-34 156.0
3 TraesCS7A01G255400 chr7A 90.678 118 9 2 5083 5200 637866012 637865897 6.970000e-34 156.0
4 TraesCS7A01G255400 chr7A 86.239 109 14 1 2131 2239 150982137 150982244 3.290000e-22 117.0
5 TraesCS7A01G255400 chr7D 91.867 2459 98 33 1851 4239 230493978 230491552 0.000000e+00 3339.0
6 TraesCS7A01G255400 chr7D 89.235 771 54 12 1103 1845 230494790 230494021 0.000000e+00 937.0
7 TraesCS7A01G255400 chr7D 82.067 842 105 27 7 810 230496239 230495406 0.000000e+00 676.0
8 TraesCS7A01G255400 chr7D 92.308 455 18 5 4353 4791 230491553 230491100 9.500000e-177 630.0
9 TraesCS7A01G255400 chr7D 84.818 303 23 2 4790 5069 230491143 230490841 3.070000e-72 283.0
10 TraesCS7A01G255400 chr7D 92.701 137 2 4 869 1005 230495331 230495203 1.910000e-44 191.0
11 TraesCS7A01G255400 chr7D 89.474 133 12 2 4228 4359 600971095 600970964 3.220000e-37 167.0
12 TraesCS7A01G255400 chr7D 89.831 118 9 3 5083 5200 560472844 560472730 1.170000e-31 148.0
13 TraesCS7A01G255400 chr7D 85.321 109 15 1 2131 2239 151270766 151270873 1.530000e-20 111.0
14 TraesCS7A01G255400 chr7D 100.000 41 0 0 826 866 230495412 230495372 5.580000e-10 76.8
15 TraesCS7A01G255400 chr7B 92.328 1877 79 32 2447 4264 201499539 201497669 0.000000e+00 2608.0
16 TraesCS7A01G255400 chr7B 87.476 1022 75 21 869 1845 201523795 201522782 0.000000e+00 1129.0
17 TraesCS7A01G255400 chr7B 89.859 355 20 7 2060 2412 201522501 201522161 4.780000e-120 442.0
18 TraesCS7A01G255400 chr7B 83.292 407 44 19 2730 3123 113161528 113161923 2.300000e-93 353.0
19 TraesCS7A01G255400 chr7B 91.632 239 14 3 1850 2086 201522741 201522507 5.020000e-85 326.0
20 TraesCS7A01G255400 chr7B 90.728 151 2 4 4346 4492 201497539 201497397 1.910000e-44 191.0
21 TraesCS7A01G255400 chr7B 86.239 109 14 1 2131 2239 113160739 113160846 3.290000e-22 117.0
22 TraesCS7A01G255400 chr7B 87.952 83 9 1 4501 4583 201497275 201497194 4.290000e-16 97.1
23 TraesCS7A01G255400 chr4A 82.984 429 58 11 2730 3150 725939997 725939576 1.770000e-99 374.0
24 TraesCS7A01G255400 chr3A 93.388 121 8 0 4234 4354 88204319 88204199 4.140000e-41 180.0
25 TraesCS7A01G255400 chr3A 90.625 128 12 0 4235 4362 734138436 734138309 2.490000e-38 171.0
26 TraesCS7A01G255400 chr3A 88.983 118 11 1 5083 5200 662419484 662419599 1.510000e-30 145.0
27 TraesCS7A01G255400 chr3A 88.889 54 5 1 4859 4911 47494162 47494109 1.210000e-06 65.8
28 TraesCS7A01G255400 chr2B 94.017 117 7 0 4238 4354 578044894 578045010 1.490000e-40 178.0
29 TraesCS7A01G255400 chr6B 90.769 130 12 0 4225 4354 27078100 27077971 1.920000e-39 174.0
30 TraesCS7A01G255400 chr1D 90.698 129 11 1 4226 4354 25454504 25454377 2.490000e-38 171.0
31 TraesCS7A01G255400 chrUn 89.313 131 14 0 4231 4361 87827516 87827386 1.160000e-36 165.0
32 TraesCS7A01G255400 chrUn 89.313 131 14 0 4231 4361 309972561 309972431 1.160000e-36 165.0
33 TraesCS7A01G255400 chrUn 89.831 118 10 1 5083 5200 127033403 127033288 3.240000e-32 150.0
34 TraesCS7A01G255400 chr2A 89.394 132 13 1 4231 4361 26851676 26851545 1.160000e-36 165.0
35 TraesCS7A01G255400 chr2A 91.228 114 7 2 5087 5200 345477746 345477636 9.020000e-33 152.0
36 TraesCS7A01G255400 chr1A 90.678 118 9 1 5083 5200 586292452 586292337 6.970000e-34 156.0
37 TraesCS7A01G255400 chr5A 89.831 118 10 2 5083 5200 617979104 617979219 3.240000e-32 150.0
38 TraesCS7A01G255400 chr4D 88.983 118 11 2 5083 5200 56741160 56741275 1.510000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G255400 chr7A 243362741 243367940 5199 True 9603.000000 9603 100.000000 1 5200 1 chr7A.!!$R2 5199
1 TraesCS7A01G255400 chr7A 150982137 150983322 1185 False 229.500000 342 82.081500 2131 3123 2 chr7A.!!$F1 992
2 TraesCS7A01G255400 chr7D 230490841 230496239 5398 True 876.114286 3339 90.428000 7 5069 7 chr7D.!!$R3 5062
3 TraesCS7A01G255400 chr7B 201497194 201499539 2345 True 965.366667 2608 90.336000 2447 4583 3 chr7B.!!$R1 2136
4 TraesCS7A01G255400 chr7B 201522161 201523795 1634 True 632.333333 1129 89.655667 869 2412 3 chr7B.!!$R2 1543
5 TraesCS7A01G255400 chr7B 113160739 113161923 1184 False 235.000000 353 84.765500 2131 3123 2 chr7B.!!$F1 992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
348 360 0.102663 TGCACCAAGTAACGTCACGA 59.897 50.000 2.91 0.00 0.00 4.35 F
418 430 0.103390 TTTGCGTCTTCGTCAGTCCA 59.897 50.000 0.00 0.00 39.49 4.02 F
419 431 0.318699 TTGCGTCTTCGTCAGTCCAG 60.319 55.000 0.00 0.00 39.49 3.86 F
1457 1876 0.449345 GCGCGCTTGTTTGAATTTGC 60.449 50.000 26.67 0.00 0.00 3.68 F
1477 1896 1.363744 GCGCTTCATGTGTAGCTCTT 58.636 50.000 0.00 0.00 36.47 2.85 F
1728 2172 1.676746 ACATGCTGTGATGCTGGATC 58.323 50.000 1.79 1.79 0.00 3.36 F
3527 4298 1.537202 GTGAGCTCGTGATTTTGCCTT 59.463 47.619 9.64 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1441 1849 0.179302 CGCGCAAATTCAAACAAGCG 60.179 50.000 8.75 0.0 46.99 4.68 R
1457 1876 0.803768 AGAGCTACACATGAAGCGCG 60.804 55.000 0.00 0.0 42.51 6.86 R
1626 2056 1.213537 CAAACTGCTGCCCCATTCG 59.786 57.895 0.00 0.0 0.00 3.34 R
2697 3444 2.334023 AGGCCAAATTAGCACCCAAAA 58.666 42.857 5.01 0.0 0.00 2.44 R
3352 4118 7.441760 TGAGCGGTAACTTTGTCTGTTTTATTA 59.558 33.333 0.00 0.0 0.00 0.98 R
3621 4402 4.584874 TGGAATCGCCTCAGTTATTTCAA 58.415 39.130 0.00 0.0 37.63 2.69 R
4330 5181 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.0 44.66 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.819379 ACTAAAGATACACGACGGTCATCTA 59.181 40.000 9.10 0.00 0.00 1.98
49 50 1.897473 TGATCACCCTCCATGATGGT 58.103 50.000 11.87 0.00 39.03 3.55
70 71 0.617935 GCTTTCCTCCTGAGAGCCTT 59.382 55.000 0.00 0.00 43.62 4.35
74 75 0.837691 TCCTCCTGAGAGCCTTTGCA 60.838 55.000 0.00 0.00 41.13 4.08
80 81 1.471684 CTGAGAGCCTTTGCATGTTCC 59.528 52.381 0.00 0.00 41.13 3.62
81 82 0.813821 GAGAGCCTTTGCATGTTCCC 59.186 55.000 0.00 0.00 41.13 3.97
82 83 0.112995 AGAGCCTTTGCATGTTCCCA 59.887 50.000 0.00 0.00 41.13 4.37
87 98 2.159198 GCCTTTGCATGTTCCCACATAG 60.159 50.000 0.00 0.00 42.14 2.23
100 111 2.224042 CCCACATAGCGTCTCAATAGCA 60.224 50.000 0.00 0.00 0.00 3.49
121 132 3.665745 AATGCTTCCGTGATTTTGCTT 57.334 38.095 0.00 0.00 0.00 3.91
123 134 3.829886 TGCTTCCGTGATTTTGCTTAG 57.170 42.857 0.00 0.00 0.00 2.18
126 137 3.188460 GCTTCCGTGATTTTGCTTAGTGA 59.812 43.478 0.00 0.00 0.00 3.41
130 141 6.325919 TCCGTGATTTTGCTTAGTGATTTT 57.674 33.333 0.00 0.00 0.00 1.82
170 182 5.475273 AGTCATTTCGTACAATGCATCAG 57.525 39.130 0.00 0.00 34.58 2.90
171 183 4.031028 GTCATTTCGTACAATGCATCAGC 58.969 43.478 0.00 0.00 42.57 4.26
173 185 5.006649 GTCATTTCGTACAATGCATCAGCTA 59.993 40.000 0.00 0.00 42.74 3.32
174 186 5.234972 TCATTTCGTACAATGCATCAGCTAG 59.765 40.000 0.00 0.00 42.74 3.42
196 208 7.067008 GCTAGGTGTTTAATAAAGATGCCTTCA 59.933 37.037 0.00 0.00 0.00 3.02
205 217 9.632638 TTAATAAAGATGCCTTCAATAAGAGCT 57.367 29.630 0.00 0.00 34.37 4.09
208 220 7.944729 AAAGATGCCTTCAATAAGAGCTTTA 57.055 32.000 0.00 0.00 34.37 1.85
212 224 8.975295 AGATGCCTTCAATAAGAGCTTTATTTT 58.025 29.630 9.69 0.00 34.37 1.82
240 252 4.836825 TGCCATAGAGCCTATGATAAAGC 58.163 43.478 18.43 14.13 0.00 3.51
243 255 2.464157 AGAGCCTATGATAAAGCCGC 57.536 50.000 0.00 0.00 0.00 6.53
251 263 2.730183 TGATAAAGCCGCGAAAATCG 57.270 45.000 8.23 0.00 43.89 3.34
258 270 2.461110 CCGCGAAAATCGACCAGGG 61.461 63.158 8.23 0.00 43.74 4.45
261 273 1.376609 GCGAAAATCGACCAGGGCAT 61.377 55.000 3.61 0.00 43.74 4.40
275 287 0.169009 GGGCATTTTGCGTGAGAGTC 59.831 55.000 0.00 0.00 46.21 3.36
276 288 1.160137 GGCATTTTGCGTGAGAGTCT 58.840 50.000 0.00 0.00 46.21 3.24
278 290 1.800586 GCATTTTGCGTGAGAGTCTCA 59.199 47.619 19.10 19.10 33.83 3.27
287 299 2.685388 CGTGAGAGTCTCATTAGCCTCA 59.315 50.000 25.17 0.00 42.73 3.86
288 300 3.488384 CGTGAGAGTCTCATTAGCCTCAC 60.488 52.174 25.17 9.36 42.73 3.51
289 301 3.445450 GTGAGAGTCTCATTAGCCTCACA 59.555 47.826 25.17 0.00 45.67 3.58
306 318 4.080919 CCTCACACTTAGGATGTGGAATGA 60.081 45.833 5.37 0.00 46.15 2.57
309 321 5.045651 TCACACTTAGGATGTGGAATGATGT 60.046 40.000 5.37 0.00 46.15 3.06
317 329 6.012113 AGGATGTGGAATGATGTGAAAGAAA 58.988 36.000 0.00 0.00 0.00 2.52
320 332 6.075762 TGTGGAATGATGTGAAAGAAACAG 57.924 37.500 0.00 0.00 0.00 3.16
330 342 1.455383 AAAGAAACAGGTGCCCGCTG 61.455 55.000 0.00 0.00 0.00 5.18
347 359 0.506932 CTGCACCAAGTAACGTCACG 59.493 55.000 0.00 0.00 0.00 4.35
348 360 0.102663 TGCACCAAGTAACGTCACGA 59.897 50.000 2.91 0.00 0.00 4.35
352 364 2.798283 CACCAAGTAACGTCACGAACAT 59.202 45.455 2.91 0.00 0.00 2.71
358 370 2.304751 AACGTCACGAACATATCCCC 57.695 50.000 2.91 0.00 0.00 4.81
363 375 2.943033 GTCACGAACATATCCCCAAAGG 59.057 50.000 0.00 0.00 0.00 3.11
384 396 6.105397 AGGAATTGTGTCAGAATGCATTTT 57.895 33.333 14.33 4.75 34.76 1.82
385 397 5.929992 AGGAATTGTGTCAGAATGCATTTTG 59.070 36.000 20.94 20.94 34.76 2.44
388 400 7.359765 GGAATTGTGTCAGAATGCATTTTGAAG 60.360 37.037 28.41 11.41 33.45 3.02
416 428 2.058798 TGATTTGCGTCTTCGTCAGTC 58.941 47.619 0.00 0.00 39.49 3.51
418 430 0.103390 TTTGCGTCTTCGTCAGTCCA 59.897 50.000 0.00 0.00 39.49 4.02
419 431 0.318699 TTGCGTCTTCGTCAGTCCAG 60.319 55.000 0.00 0.00 39.49 3.86
420 432 1.170290 TGCGTCTTCGTCAGTCCAGA 61.170 55.000 0.00 0.00 39.49 3.86
423 435 2.052157 CGTCTTCGTCAGTCCAGAAAC 58.948 52.381 0.00 0.00 0.00 2.78
433 447 3.118555 TCAGTCCAGAAACGGAAACAAGA 60.119 43.478 0.00 0.00 36.62 3.02
435 449 2.940410 GTCCAGAAACGGAAACAAGACA 59.060 45.455 0.00 0.00 36.62 3.41
443 457 2.632996 ACGGAAACAAGACATCTCCTCA 59.367 45.455 0.00 0.00 0.00 3.86
444 458 3.261897 ACGGAAACAAGACATCTCCTCAT 59.738 43.478 0.00 0.00 0.00 2.90
445 459 4.466370 ACGGAAACAAGACATCTCCTCATA 59.534 41.667 0.00 0.00 0.00 2.15
446 460 5.129485 ACGGAAACAAGACATCTCCTCATAT 59.871 40.000 0.00 0.00 0.00 1.78
450 464 5.946942 ACAAGACATCTCCTCATATGTGT 57.053 39.130 1.90 0.00 36.48 3.72
452 466 5.163364 ACAAGACATCTCCTCATATGTGTCC 60.163 44.000 14.79 2.56 36.48 4.02
456 470 4.346418 ACATCTCCTCATATGTGTCCCTTC 59.654 45.833 1.90 0.00 35.06 3.46
491 505 4.787280 AGGCCTCCCGTCCCTCAG 62.787 72.222 0.00 0.00 35.76 3.35
503 517 1.376942 CCCTCAGAAGCTGCCACAG 60.377 63.158 0.00 0.00 34.12 3.66
536 550 1.983481 GCCCAATGCCATGGTGTGA 60.983 57.895 14.67 0.00 38.91 3.58
541 555 2.610976 CCAATGCCATGGTGTGAAACTG 60.611 50.000 14.67 0.20 38.04 3.16
547 561 2.361757 CCATGGTGTGAAACTGCTTCAA 59.638 45.455 2.57 0.00 45.67 2.69
560 574 0.674581 GCTTCAAGCATTTTGGCCCC 60.675 55.000 3.89 0.00 41.89 5.80
561 575 0.686224 CTTCAAGCATTTTGGCCCCA 59.314 50.000 0.00 0.00 0.00 4.96
611 628 2.306805 TGCAATCAGAGTGAACCTGGAT 59.693 45.455 0.94 0.00 32.73 3.41
637 674 3.502875 GGGGCCAGATTCCCTCCC 61.503 72.222 4.39 0.00 43.41 4.30
640 677 1.659035 GGGCCAGATTCCCTCCCATT 61.659 60.000 4.39 0.00 40.66 3.16
649 686 4.958581 AGATTCCCTCCCATTGTTGATTTC 59.041 41.667 0.00 0.00 0.00 2.17
654 691 5.606329 TCCCTCCCATTGTTGATTTCTTTTT 59.394 36.000 0.00 0.00 0.00 1.94
674 711 2.107950 TCGCAGGGATCGTTGATTTT 57.892 45.000 0.00 0.00 0.00 1.82
675 712 2.006888 TCGCAGGGATCGTTGATTTTC 58.993 47.619 0.00 0.00 0.00 2.29
730 767 6.736110 ATTATTTGAAATGATGTCTGGGGG 57.264 37.500 0.00 0.00 0.00 5.40
731 768 3.541242 TTTGAAATGATGTCTGGGGGT 57.459 42.857 0.00 0.00 0.00 4.95
744 781 1.629861 CTGGGGGTCAAATTTTGGCAT 59.370 47.619 15.12 0.00 36.88 4.40
747 784 2.239402 GGGGGTCAAATTTTGGCATGAT 59.761 45.455 15.12 0.00 36.88 2.45
784 821 1.545582 CGGTGAGGACAAATTTGGCAT 59.454 47.619 25.05 19.19 38.18 4.40
802 839 3.305131 GGCATCAAATCGATCATGCATGT 60.305 43.478 25.43 13.42 42.94 3.21
803 840 4.083164 GGCATCAAATCGATCATGCATGTA 60.083 41.667 25.43 13.19 42.94 2.29
804 841 5.454520 GCATCAAATCGATCATGCATGTAA 58.545 37.500 25.43 8.61 41.16 2.41
805 842 5.916320 GCATCAAATCGATCATGCATGTAAA 59.084 36.000 25.43 7.83 41.16 2.01
806 843 6.418523 GCATCAAATCGATCATGCATGTAAAA 59.581 34.615 25.43 7.44 41.16 1.52
807 844 7.043258 GCATCAAATCGATCATGCATGTAAAAA 60.043 33.333 25.43 7.04 41.16 1.94
889 964 2.128771 CCTATCAATTATGGGCCGGG 57.871 55.000 2.18 0.00 28.14 5.73
923 1002 2.568612 GCCTGCTTTTTCCGAGCC 59.431 61.111 0.00 0.00 39.38 4.70
962 1042 1.289109 AACAAGAATCCCGTGCGTCG 61.289 55.000 0.00 0.00 39.52 5.12
964 1044 1.445582 AAGAATCCCGTGCGTCGTC 60.446 57.895 0.00 0.00 37.94 4.20
966 1046 3.352338 GAATCCCGTGCGTCGTCCT 62.352 63.158 0.00 0.00 37.94 3.85
968 1048 2.830704 AATCCCGTGCGTCGTCCTTC 62.831 60.000 0.00 0.00 37.94 3.46
970 1050 4.695231 CCGTGCGTCGTCCTTCGT 62.695 66.667 0.00 0.00 40.80 3.85
971 1051 3.458579 CGTGCGTCGTCCTTCGTG 61.459 66.667 0.00 0.00 40.80 4.35
1030 1115 1.764054 CCCTCTTCGCCTCCTCCAT 60.764 63.158 0.00 0.00 0.00 3.41
1035 1120 1.753368 CTTCGCCTCCTCCATCTCCC 61.753 65.000 0.00 0.00 0.00 4.30
1058 1143 3.391382 GTCCCACTGTCCTCCCGG 61.391 72.222 0.00 0.00 0.00 5.73
1073 1158 4.587189 CGGGATTCTCCGCGTCCC 62.587 72.222 19.16 19.16 46.63 4.46
1241 1649 1.074319 GCAGATTTACGTCGCCGTCA 61.074 55.000 0.00 0.00 46.28 4.35
1286 1694 1.424493 GCTCCTCGCAGGTGATTTCG 61.424 60.000 8.01 0.00 36.53 3.46
1318 1726 1.535833 TCCTCTCGAAGTGTGTCCTC 58.464 55.000 0.00 0.00 0.00 3.71
1326 1734 0.892358 AAGTGTGTCCTCGCTACCGA 60.892 55.000 0.00 0.00 42.01 4.69
1346 1754 1.136690 CTGTTCGCGCAGTAGTCAAA 58.863 50.000 8.75 0.00 0.00 2.69
1347 1755 1.726791 CTGTTCGCGCAGTAGTCAAAT 59.273 47.619 8.75 0.00 0.00 2.32
1351 1759 1.135228 TCGCGCAGTAGTCAAATAGCA 60.135 47.619 8.75 0.00 0.00 3.49
1420 1828 1.699634 TGGCAACTTAAGAGCTGTCCT 59.300 47.619 10.09 0.00 37.61 3.85
1457 1876 0.449345 GCGCGCTTGTTTGAATTTGC 60.449 50.000 26.67 0.00 0.00 3.68
1477 1896 1.363744 GCGCTTCATGTGTAGCTCTT 58.636 50.000 0.00 0.00 36.47 2.85
1491 1910 6.138761 GTGTAGCTCTTGTTTTTGACTGATG 58.861 40.000 0.00 0.00 0.00 3.07
1538 1960 5.396484 TGTGTCGTTAGCTGTAGTGTAATC 58.604 41.667 0.00 0.00 0.00 1.75
1544 1966 5.739630 CGTTAGCTGTAGTGTAATCTCACTG 59.260 44.000 9.21 0.00 46.36 3.66
1605 2035 2.289945 GGATCAAACTGAGAGCTGGTGT 60.290 50.000 0.00 0.00 0.00 4.16
1626 2056 9.158233 TGGTGTATAGTTTGTGTAATTTAGCTC 57.842 33.333 0.00 0.00 0.00 4.09
1663 2093 7.306574 GCAGTTTGCAGTTTCCTGTTTAATTAC 60.307 37.037 0.00 0.00 44.26 1.89
1664 2094 7.920682 CAGTTTGCAGTTTCCTGTTTAATTACT 59.079 33.333 0.00 0.00 41.02 2.24
1665 2095 7.920682 AGTTTGCAGTTTCCTGTTTAATTACTG 59.079 33.333 0.00 0.00 41.02 2.74
1666 2096 6.325919 TGCAGTTTCCTGTTTAATTACTGG 57.674 37.500 0.00 0.84 41.02 4.00
1667 2097 6.065374 TGCAGTTTCCTGTTTAATTACTGGA 58.935 36.000 0.00 3.52 42.30 3.86
1668 2098 6.719370 TGCAGTTTCCTGTTTAATTACTGGAT 59.281 34.615 7.56 0.00 43.11 3.41
1697 2130 9.712305 AAACATAATCTACAGTATGGATGTAGC 57.288 33.333 7.99 0.00 46.36 3.58
1728 2172 1.676746 ACATGCTGTGATGCTGGATC 58.323 50.000 1.79 1.79 0.00 3.36
1737 2181 3.007831 TGTGATGCTGGATCTGTACACAA 59.992 43.478 10.56 0.00 34.81 3.33
1742 2186 2.744202 GCTGGATCTGTACACAACCTTG 59.256 50.000 0.00 0.00 0.00 3.61
1776 2220 4.931661 ACTGTTAACTGAGAACGGAAGA 57.068 40.909 18.21 0.00 36.78 2.87
1783 2227 3.223435 ACTGAGAACGGAAGAAGAGACA 58.777 45.455 0.00 0.00 0.00 3.41
1791 2235 5.869753 ACGGAAGAAGAGACATTGAAATG 57.130 39.130 1.45 1.45 42.10 2.32
1827 2271 3.758554 CACTTTATACTTTGCAGTGGGCT 59.241 43.478 0.00 0.00 45.15 5.19
1835 2279 3.521937 ACTTTGCAGTGGGCTATAAGGTA 59.478 43.478 0.00 0.00 45.15 3.08
2078 2590 8.202137 TGTGGAGGTACTTAGTAATATTTCTGC 58.798 37.037 4.95 0.00 41.55 4.26
2101 2613 9.630098 CTGCTTTTGTGATTATAATTTCACTGT 57.370 29.630 16.40 0.00 42.17 3.55
2126 2640 3.226346 ACATGTGCAGCAATTGATGAC 57.774 42.857 27.03 19.96 32.25 3.06
2135 2649 4.576053 GCAGCAATTGATGACCAGTGTATA 59.424 41.667 27.03 0.00 32.25 1.47
2196 2711 6.594788 AAATCAAACACCATTGTGCTATCT 57.405 33.333 0.00 0.00 46.86 1.98
2257 2772 6.595716 CCAGGTAATTATCTACTATGGCAAGC 59.404 42.308 0.00 0.00 0.00 4.01
2357 2902 4.235079 ACCTTGCATATCTAGGTTTGCA 57.765 40.909 16.06 16.06 46.49 4.08
2383 2929 3.149196 TGATTGCCAGTTTTCTGTCTCC 58.851 45.455 0.00 0.00 45.68 3.71
2409 3125 4.770010 TCATTGCCAAGTTTTAGTTAGGGG 59.230 41.667 0.00 0.00 0.00 4.79
2442 3159 2.818130 TTTGTTTGCAATCTGCCCTC 57.182 45.000 0.00 0.00 44.23 4.30
2507 3235 3.552294 GCTTAACGTCTACTCTGATTGCC 59.448 47.826 0.00 0.00 0.00 4.52
2510 3238 3.895232 ACGTCTACTCTGATTGCCATT 57.105 42.857 0.00 0.00 0.00 3.16
2523 3252 6.094464 TCTGATTGCCATTGTCTTATGACTTG 59.906 38.462 9.87 7.52 43.29 3.16
2524 3253 4.439305 TTGCCATTGTCTTATGACTTGC 57.561 40.909 9.87 7.54 43.29 4.01
2568 3299 6.321181 AGTTGCCTTGATTTTACTGTCTGAAA 59.679 34.615 0.00 0.00 0.00 2.69
2697 3444 8.851541 TTAACGGTGTTCTATACCATCTTTTT 57.148 30.769 0.00 0.00 38.11 1.94
2720 3467 2.334023 TGGGTGCTAATTTGGCCTTTT 58.666 42.857 3.32 0.00 0.00 2.27
2851 3598 7.115947 GCTGTTTTCTTGGAGATGAATCTTTTG 59.884 37.037 0.00 0.00 37.25 2.44
3352 4118 6.893020 AGGGTTCCTGTTCTTATATTCTGT 57.107 37.500 0.00 0.00 29.57 3.41
3425 4191 6.145535 CAGCTGGAAAAAGAAGTGTATGTTC 58.854 40.000 5.57 0.00 0.00 3.18
3426 4192 5.241728 AGCTGGAAAAAGAAGTGTATGTTCC 59.758 40.000 0.00 0.00 34.83 3.62
3515 4285 8.581057 AATCTACAGTAAATTATGTGAGCTCG 57.419 34.615 9.64 0.00 0.00 5.03
3527 4298 1.537202 GTGAGCTCGTGATTTTGCCTT 59.463 47.619 9.64 0.00 0.00 4.35
3557 4328 9.851686 TTACTGCATCTTGATGTATCCTATTTT 57.148 29.630 11.61 0.00 0.00 1.82
3558 4329 8.757982 ACTGCATCTTGATGTATCCTATTTTT 57.242 30.769 11.61 0.00 0.00 1.94
3637 4418 4.872691 ACTGATCTTGAAATAACTGAGGCG 59.127 41.667 0.00 0.00 0.00 5.52
3703 4484 3.116091 CAACCACTTGGACAGGCTT 57.884 52.632 1.14 0.00 38.94 4.35
3794 4575 2.932614 GGAATCGAGGAATGCCATATCG 59.067 50.000 0.00 0.00 36.29 2.92
3932 4713 1.926561 CAGTCGAGCAATTCATCCGA 58.073 50.000 0.00 0.00 0.00 4.55
3956 4737 1.398390 CACGTCAGGGCTTAGATTTGC 59.602 52.381 0.00 0.00 0.00 3.68
3963 4745 1.974265 GGCTTAGATTTGCCTCCTCC 58.026 55.000 0.00 0.00 45.26 4.30
4049 4841 1.831106 CTACCATGGGTGTGCTGACTA 59.169 52.381 18.09 0.00 36.19 2.59
4248 5051 3.398292 ACCATTCTATCTACTCCCTCCGA 59.602 47.826 0.00 0.00 0.00 4.55
4249 5052 3.759618 CCATTCTATCTACTCCCTCCGAC 59.240 52.174 0.00 0.00 0.00 4.79
4251 5054 1.347050 TCTATCTACTCCCTCCGACCG 59.653 57.143 0.00 0.00 0.00 4.79
4252 5055 1.347050 CTATCTACTCCCTCCGACCGA 59.653 57.143 0.00 0.00 0.00 4.69
4258 5061 1.479730 ACTCCCTCCGACCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
4264 5067 2.597305 CTCCGACCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 46.05 4.35
4273 5076 4.034048 CGAAAATACTTGTCGGAGGAATGG 59.966 45.833 0.00 0.00 0.00 3.16
4274 5077 4.837093 AAATACTTGTCGGAGGAATGGA 57.163 40.909 0.00 0.00 0.00 3.41
4276 5079 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
4279 5082 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
4281 5084 3.576861 TGTCGGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 0.00 1.98
4284 5087 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
4285 5088 5.654650 GTCGGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 0.00 1.98
4286 5089 5.654209 TCGGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
4287 5090 5.420421 CGGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
4288 5091 6.603599 CGGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
4289 5092 7.286546 CGGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
4290 5093 8.986991 GGAGGAATGGATGTATCTAGATGTATT 58.013 37.037 15.79 6.57 0.00 1.89
4341 5192 3.631145 TTATCCGACGAGTATTTCCGG 57.369 47.619 0.00 0.00 41.36 5.14
4344 5195 0.590732 CCGACGAGTATTTCCGGACG 60.591 60.000 1.83 5.89 42.49 4.79
4412 5265 9.176181 GCTTTCAATTTTCTTTACACGATGTTA 57.824 29.630 0.00 0.00 0.00 2.41
4556 5528 9.435688 ACTTTGCATTGTTTATAGGGAAAATTC 57.564 29.630 0.00 0.00 0.00 2.17
4646 5626 7.553334 TCTGTAGAAATATCACAAGTACCACC 58.447 38.462 0.00 0.00 0.00 4.61
4648 5628 5.416271 AGAAATATCACAAGTACCACCGT 57.584 39.130 0.00 0.00 0.00 4.83
4652 5632 1.964373 CACAAGTACCACCGTGCCC 60.964 63.158 0.00 0.00 0.00 5.36
4696 5681 7.878495 ACTATACCCAAAATCCTTCATAACCA 58.122 34.615 0.00 0.00 0.00 3.67
4710 5695 6.799925 CCTTCATAACCACGTGAATTACAAAC 59.200 38.462 19.30 0.00 34.18 2.93
4738 5723 9.914131 ATCAATTTAAAGTGCTCTTAAAGTTCC 57.086 29.630 10.71 0.00 33.09 3.62
4744 5729 5.297569 AGTGCTCTTAAAGTTCCAAGTCT 57.702 39.130 0.00 0.00 0.00 3.24
4750 5735 5.751586 TCTTAAAGTTCCAAGTCTGGTTGT 58.248 37.500 0.00 0.00 43.97 3.32
4758 5743 2.680841 CCAAGTCTGGTTGTTCAAACGA 59.319 45.455 0.00 0.00 38.00 3.85
4778 5763 8.885722 CAAACGAATGCCTTTACCTACTTATAA 58.114 33.333 0.00 0.00 0.00 0.98
4779 5764 9.452287 AAACGAATGCCTTTACCTACTTATAAA 57.548 29.630 0.00 0.00 0.00 1.40
4780 5765 9.452287 AACGAATGCCTTTACCTACTTATAAAA 57.548 29.630 0.00 0.00 0.00 1.52
4781 5766 9.623000 ACGAATGCCTTTACCTACTTATAAAAT 57.377 29.630 0.00 0.00 0.00 1.82
4805 5790 6.942886 TGAATAATTGTTCAAACGAATGCC 57.057 33.333 14.47 0.00 35.31 4.40
4806 5791 6.686630 TGAATAATTGTTCAAACGAATGCCT 58.313 32.000 14.47 0.00 35.31 4.75
4807 5792 7.151308 TGAATAATTGTTCAAACGAATGCCTT 58.849 30.769 14.47 0.00 35.31 4.35
4808 5793 7.655328 TGAATAATTGTTCAAACGAATGCCTTT 59.345 29.630 14.47 0.00 35.31 3.11
4809 5794 9.134734 GAATAATTGTTCAAACGAATGCCTTTA 57.865 29.630 9.81 0.00 0.00 1.85
4810 5795 6.763303 AATTGTTCAAACGAATGCCTTTAC 57.237 33.333 0.00 0.00 0.00 2.01
4811 5796 4.231718 TGTTCAAACGAATGCCTTTACC 57.768 40.909 0.00 0.00 0.00 2.85
4812 5797 3.004944 TGTTCAAACGAATGCCTTTACCC 59.995 43.478 0.00 0.00 0.00 3.69
4813 5798 2.865079 TCAAACGAATGCCTTTACCCA 58.135 42.857 0.00 0.00 0.00 4.51
4814 5799 2.554893 TCAAACGAATGCCTTTACCCAC 59.445 45.455 0.00 0.00 0.00 4.61
4815 5800 2.556622 CAAACGAATGCCTTTACCCACT 59.443 45.455 0.00 0.00 0.00 4.00
4816 5801 2.579410 ACGAATGCCTTTACCCACTT 57.421 45.000 0.00 0.00 0.00 3.16
4817 5802 3.706600 ACGAATGCCTTTACCCACTTA 57.293 42.857 0.00 0.00 0.00 2.24
4818 5803 4.230745 ACGAATGCCTTTACCCACTTAT 57.769 40.909 0.00 0.00 0.00 1.73
4819 5804 5.362105 ACGAATGCCTTTACCCACTTATA 57.638 39.130 0.00 0.00 0.00 0.98
4860 5845 6.183360 CGGAAATGATGAATCCTGAATGTTCA 60.183 38.462 0.00 0.00 36.42 3.18
4875 5860 7.773489 TGAATGTTCAGATTTTACCCATGAA 57.227 32.000 0.00 0.00 32.50 2.57
4943 5951 4.464069 TTTCTGGTGAAAACCAAACTGG 57.536 40.909 0.00 0.00 39.02 4.00
4944 5952 2.383855 TCTGGTGAAAACCAAACTGGG 58.616 47.619 0.00 0.00 43.37 4.45
4954 5962 5.959583 AAACCAAACTGGGGACAAAATTA 57.040 34.783 0.00 0.00 43.37 1.40
4955 5963 6.508030 AAACCAAACTGGGGACAAAATTAT 57.492 33.333 0.00 0.00 43.37 1.28
4986 5994 6.575162 ACCAACTAAATTTGTCATCCTCAC 57.425 37.500 0.00 0.00 0.00 3.51
5029 6037 4.853924 AGTGTTTGATTTGTCATGGACC 57.146 40.909 0.00 0.00 0.00 4.46
5051 6059 4.379813 CCAAATCCGAACATTCAGGACTTG 60.380 45.833 14.30 14.30 37.12 3.16
5053 6061 3.040147 TCCGAACATTCAGGACTTGTC 57.960 47.619 0.00 0.00 0.00 3.18
5069 6077 4.777463 ACTTGTCGGGGTCCATAATTAAG 58.223 43.478 0.00 0.00 0.00 1.85
5070 6078 3.849563 TGTCGGGGTCCATAATTAAGG 57.150 47.619 0.00 0.00 0.00 2.69
5071 6079 2.440253 TGTCGGGGTCCATAATTAAGGG 59.560 50.000 6.89 3.82 0.00 3.95
5072 6080 1.422402 TCGGGGTCCATAATTAAGGGC 59.578 52.381 6.89 4.84 0.00 5.19
5073 6081 1.423921 CGGGGTCCATAATTAAGGGCT 59.576 52.381 10.91 0.00 0.00 5.19
5074 6082 2.158519 CGGGGTCCATAATTAAGGGCTT 60.159 50.000 10.91 0.00 0.00 4.35
5075 6083 3.497332 GGGGTCCATAATTAAGGGCTTC 58.503 50.000 10.91 4.47 0.00 3.86
5076 6084 3.140332 GGGGTCCATAATTAAGGGCTTCT 59.860 47.826 10.91 0.00 0.00 2.85
5077 6085 4.387550 GGGGTCCATAATTAAGGGCTTCTT 60.388 45.833 10.91 0.00 39.40 2.52
5078 6086 5.208890 GGGTCCATAATTAAGGGCTTCTTT 58.791 41.667 10.91 0.00 36.93 2.52
5079 6087 5.069119 GGGTCCATAATTAAGGGCTTCTTTG 59.931 44.000 10.91 0.00 36.93 2.77
5080 6088 5.891551 GGTCCATAATTAAGGGCTTCTTTGA 59.108 40.000 10.91 0.00 36.93 2.69
5081 6089 6.183360 GGTCCATAATTAAGGGCTTCTTTGAC 60.183 42.308 10.91 0.00 36.93 3.18
5082 6090 6.603599 GTCCATAATTAAGGGCTTCTTTGACT 59.396 38.462 4.08 0.00 36.93 3.41
5083 6091 6.828785 TCCATAATTAAGGGCTTCTTTGACTC 59.171 38.462 6.89 0.00 36.93 3.36
5084 6092 6.830838 CCATAATTAAGGGCTTCTTTGACTCT 59.169 38.462 0.00 0.00 36.93 3.24
5085 6093 7.993183 CCATAATTAAGGGCTTCTTTGACTCTA 59.007 37.037 0.00 0.00 36.93 2.43
5086 6094 9.050601 CATAATTAAGGGCTTCTTTGACTCTAG 57.949 37.037 0.00 0.00 36.93 2.43
5087 6095 6.875972 ATTAAGGGCTTCTTTGACTCTAGA 57.124 37.500 0.00 0.00 36.93 2.43
5088 6096 4.817318 AAGGGCTTCTTTGACTCTAGAG 57.183 45.455 18.49 18.49 29.99 2.43
5089 6097 3.103742 AGGGCTTCTTTGACTCTAGAGG 58.896 50.000 23.50 5.70 0.00 3.69
5090 6098 3.100671 GGGCTTCTTTGACTCTAGAGGA 58.899 50.000 23.50 8.03 0.00 3.71
5091 6099 3.709141 GGGCTTCTTTGACTCTAGAGGAT 59.291 47.826 23.50 3.46 0.00 3.24
5092 6100 4.163268 GGGCTTCTTTGACTCTAGAGGATT 59.837 45.833 23.50 2.66 0.00 3.01
5093 6101 5.115480 GGCTTCTTTGACTCTAGAGGATTG 58.885 45.833 23.50 9.62 0.00 2.67
5094 6102 5.105146 GGCTTCTTTGACTCTAGAGGATTGA 60.105 44.000 23.50 11.61 0.00 2.57
5095 6103 6.402222 GCTTCTTTGACTCTAGAGGATTGAA 58.598 40.000 23.50 17.15 0.00 2.69
5096 6104 6.876257 GCTTCTTTGACTCTAGAGGATTGAAA 59.124 38.462 23.50 8.67 0.00 2.69
5097 6105 7.552330 GCTTCTTTGACTCTAGAGGATTGAAAT 59.448 37.037 23.50 0.00 0.00 2.17
5098 6106 9.097257 CTTCTTTGACTCTAGAGGATTGAAATC 57.903 37.037 23.50 9.82 34.66 2.17
5130 6138 5.799827 TTTTTCCCTATGTTGGTCCTTTG 57.200 39.130 0.00 0.00 0.00 2.77
5131 6139 4.733077 TTTCCCTATGTTGGTCCTTTGA 57.267 40.909 0.00 0.00 0.00 2.69
5132 6140 4.946160 TTCCCTATGTTGGTCCTTTGAT 57.054 40.909 0.00 0.00 0.00 2.57
5133 6141 4.946160 TCCCTATGTTGGTCCTTTGATT 57.054 40.909 0.00 0.00 0.00 2.57
5134 6142 5.269554 TCCCTATGTTGGTCCTTTGATTT 57.730 39.130 0.00 0.00 0.00 2.17
5135 6143 6.395780 TCCCTATGTTGGTCCTTTGATTTA 57.604 37.500 0.00 0.00 0.00 1.40
5136 6144 6.980577 TCCCTATGTTGGTCCTTTGATTTAT 58.019 36.000 0.00 0.00 0.00 1.40
5137 6145 8.108378 TCCCTATGTTGGTCCTTTGATTTATA 57.892 34.615 0.00 0.00 0.00 0.98
5138 6146 8.217799 TCCCTATGTTGGTCCTTTGATTTATAG 58.782 37.037 0.00 0.00 0.00 1.31
5139 6147 7.448469 CCCTATGTTGGTCCTTTGATTTATAGG 59.552 40.741 0.00 0.00 35.40 2.57
5140 6148 8.217799 CCTATGTTGGTCCTTTGATTTATAGGA 58.782 37.037 0.00 0.00 36.93 2.94
5141 6149 9.799106 CTATGTTGGTCCTTTGATTTATAGGAT 57.201 33.333 0.00 0.00 40.05 3.24
5143 6151 8.292444 TGTTGGTCCTTTGATTTATAGGATTG 57.708 34.615 0.00 0.00 40.05 2.67
5144 6152 7.893302 TGTTGGTCCTTTGATTTATAGGATTGT 59.107 33.333 0.00 0.00 40.05 2.71
5145 6153 9.403583 GTTGGTCCTTTGATTTATAGGATTGTA 57.596 33.333 0.00 0.00 40.05 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.346734 TGACCGTCGTGTATCTTTAGTC 57.653 45.455 0.00 0.00 0.00 2.59
2 3 5.171147 AGATGACCGTCGTGTATCTTTAG 57.829 43.478 0.00 0.00 0.00 1.85
3 4 6.682423 TTAGATGACCGTCGTGTATCTTTA 57.318 37.500 0.00 0.00 31.19 1.85
4 5 5.571784 TTAGATGACCGTCGTGTATCTTT 57.428 39.130 0.00 0.00 31.19 2.52
5 6 4.497674 GCTTAGATGACCGTCGTGTATCTT 60.498 45.833 0.00 0.00 31.19 2.40
18 19 4.376146 GAGGGTGATCAAGCTTAGATGAC 58.624 47.826 13.78 14.49 0.00 3.06
25 26 1.918262 TCATGGAGGGTGATCAAGCTT 59.082 47.619 0.00 0.00 0.00 3.74
49 50 0.326264 GGCTCTCAGGAGGAAAGCAA 59.674 55.000 9.72 0.00 39.80 3.91
70 71 1.093972 CGCTATGTGGGAACATGCAA 58.906 50.000 0.00 0.00 46.14 4.08
74 75 1.831106 TGAGACGCTATGTGGGAACAT 59.169 47.619 0.00 0.00 46.14 2.71
80 81 3.097877 TGCTATTGAGACGCTATGTGG 57.902 47.619 0.00 0.00 0.00 4.17
81 82 5.438117 CATTTGCTATTGAGACGCTATGTG 58.562 41.667 0.00 0.00 0.00 3.21
82 83 4.024556 GCATTTGCTATTGAGACGCTATGT 60.025 41.667 0.00 0.00 38.21 2.29
100 111 3.665745 AGCAAAATCACGGAAGCATTT 57.334 38.095 0.00 0.00 0.00 2.32
109 120 7.026568 GTGAAAATCACTAAGCAAAATCACG 57.973 36.000 3.31 0.00 43.73 4.35
142 153 9.746711 GATGCATTGTACGAAATGACTATATTC 57.253 33.333 0.00 0.00 39.46 1.75
147 158 5.006649 GCTGATGCATTGTACGAAATGACTA 59.993 40.000 0.00 0.00 39.46 2.59
148 159 4.201851 GCTGATGCATTGTACGAAATGACT 60.202 41.667 0.00 0.00 39.46 3.41
149 160 4.031028 GCTGATGCATTGTACGAAATGAC 58.969 43.478 0.00 3.03 39.46 3.06
150 161 3.940852 AGCTGATGCATTGTACGAAATGA 59.059 39.130 0.00 0.00 39.46 2.57
151 162 4.282950 AGCTGATGCATTGTACGAAATG 57.717 40.909 0.00 2.33 42.74 2.32
152 163 4.512944 CCTAGCTGATGCATTGTACGAAAT 59.487 41.667 0.00 0.00 42.74 2.17
153 164 3.871006 CCTAGCTGATGCATTGTACGAAA 59.129 43.478 0.00 0.00 42.74 3.46
154 165 3.118775 ACCTAGCTGATGCATTGTACGAA 60.119 43.478 0.00 0.00 42.74 3.85
156 167 2.541346 CACCTAGCTGATGCATTGTACG 59.459 50.000 0.00 0.00 42.74 3.67
170 182 6.944234 AGGCATCTTTATTAAACACCTAGC 57.056 37.500 0.00 0.00 0.00 3.42
171 183 8.506168 TGAAGGCATCTTTATTAAACACCTAG 57.494 34.615 0.00 0.00 32.52 3.02
173 185 7.775053 TTGAAGGCATCTTTATTAAACACCT 57.225 32.000 0.00 0.00 32.52 4.00
208 220 9.979897 TCATAGGCTCTATGGCATATTAAAAAT 57.020 29.630 7.81 0.00 44.55 1.82
219 231 4.195416 GGCTTTATCATAGGCTCTATGGC 58.805 47.826 17.11 13.14 42.15 4.40
230 242 4.052608 TCGATTTTCGCGGCTTTATCATA 58.947 39.130 6.13 0.00 40.21 2.15
232 244 2.029970 GTCGATTTTCGCGGCTTTATCA 59.970 45.455 6.13 0.00 40.21 2.15
238 250 2.047655 TGGTCGATTTTCGCGGCT 60.048 55.556 6.13 0.00 40.21 5.52
240 252 2.461110 CCCTGGTCGATTTTCGCGG 61.461 63.158 6.13 0.00 40.21 6.46
243 255 1.094785 AATGCCCTGGTCGATTTTCG 58.905 50.000 0.00 0.00 42.10 3.46
251 263 1.080569 CACGCAAAATGCCCTGGTC 60.081 57.895 0.00 0.00 41.12 4.02
258 270 1.800586 TGAGACTCTCACGCAAAATGC 59.199 47.619 4.50 0.00 35.39 3.56
261 273 3.679980 GCTAATGAGACTCTCACGCAAAA 59.320 43.478 11.07 0.00 43.63 2.44
275 287 5.163364 ACATCCTAAGTGTGAGGCTAATGAG 60.163 44.000 0.00 0.00 33.73 2.90
276 288 4.716784 ACATCCTAAGTGTGAGGCTAATGA 59.283 41.667 0.00 0.00 33.73 2.57
287 299 5.045651 TCACATCATTCCACATCCTAAGTGT 60.046 40.000 0.00 0.00 35.24 3.55
288 300 5.430886 TCACATCATTCCACATCCTAAGTG 58.569 41.667 0.00 0.00 36.76 3.16
289 301 5.698741 TCACATCATTCCACATCCTAAGT 57.301 39.130 0.00 0.00 0.00 2.24
330 342 1.071041 GTTCGTGACGTTACTTGGTGC 60.071 52.381 4.40 0.00 0.00 5.01
347 359 5.422012 ACACAATTCCTTTGGGGATATGTTC 59.578 40.000 0.00 0.00 43.47 3.18
348 360 5.341169 ACACAATTCCTTTGGGGATATGTT 58.659 37.500 0.00 0.00 43.47 2.71
352 364 4.290985 TCTGACACAATTCCTTTGGGGATA 59.709 41.667 0.00 0.00 43.47 2.59
358 370 4.873817 TGCATTCTGACACAATTCCTTTG 58.126 39.130 0.00 0.00 41.36 2.77
363 375 7.383029 TCTTCAAAATGCATTCTGACACAATTC 59.617 33.333 14.97 0.00 0.00 2.17
368 380 7.467557 TTTTCTTCAAAATGCATTCTGACAC 57.532 32.000 14.97 0.00 0.00 3.67
394 406 3.067106 ACTGACGAAGACGCAAATCATT 58.933 40.909 0.00 0.00 43.96 2.57
403 415 2.052157 GTTTCTGGACTGACGAAGACG 58.948 52.381 0.00 0.00 45.75 4.18
411 423 2.992124 TGTTTCCGTTTCTGGACTGA 57.008 45.000 0.00 0.00 37.89 3.41
416 428 3.815401 AGATGTCTTGTTTCCGTTTCTGG 59.185 43.478 0.00 0.00 0.00 3.86
418 430 4.065789 GGAGATGTCTTGTTTCCGTTTCT 58.934 43.478 0.00 0.00 0.00 2.52
419 431 4.065789 AGGAGATGTCTTGTTTCCGTTTC 58.934 43.478 0.00 0.00 33.16 2.78
420 432 4.065789 GAGGAGATGTCTTGTTTCCGTTT 58.934 43.478 0.00 0.00 33.16 3.60
423 435 3.319137 TGAGGAGATGTCTTGTTTCCG 57.681 47.619 0.00 0.00 33.16 4.30
433 447 3.933886 AGGGACACATATGAGGAGATGT 58.066 45.455 10.38 1.56 34.22 3.06
435 449 4.592351 CAGAAGGGACACATATGAGGAGAT 59.408 45.833 10.38 0.00 0.00 2.75
443 457 5.940470 GTGAAAGTTCAGAAGGGACACATAT 59.060 40.000 0.00 0.00 37.98 1.78
444 458 5.163248 TGTGAAAGTTCAGAAGGGACACATA 60.163 40.000 0.00 0.00 37.98 2.29
445 459 4.137543 GTGAAAGTTCAGAAGGGACACAT 58.862 43.478 0.00 0.00 37.98 3.21
446 460 3.054728 TGTGAAAGTTCAGAAGGGACACA 60.055 43.478 0.00 0.00 37.98 3.72
450 464 2.158667 GGGTGTGAAAGTTCAGAAGGGA 60.159 50.000 0.00 0.00 37.98 4.20
452 466 1.873591 CGGGTGTGAAAGTTCAGAAGG 59.126 52.381 0.00 0.00 37.98 3.46
456 470 1.873591 CCTTCGGGTGTGAAAGTTCAG 59.126 52.381 0.00 0.00 37.98 3.02
478 492 1.684049 AGCTTCTGAGGGACGGGAG 60.684 63.158 0.00 0.00 33.73 4.30
479 493 1.984570 CAGCTTCTGAGGGACGGGA 60.985 63.158 0.00 0.00 32.44 5.14
481 495 2.125350 GCAGCTTCTGAGGGACGG 60.125 66.667 0.00 0.00 32.44 4.79
483 497 1.376553 GTGGCAGCTTCTGAGGGAC 60.377 63.158 0.00 0.00 32.44 4.46
486 500 4.298009 CTGTGGCAGCTTCTGAGG 57.702 61.111 0.00 0.00 32.44 3.86
503 517 4.477780 CATTGGGCACATCAAAATTTTGC 58.522 39.130 23.36 13.61 38.05 3.68
504 518 4.477780 GCATTGGGCACATCAAAATTTTG 58.522 39.130 22.40 22.40 43.97 2.44
510 524 2.755980 TGGCATTGGGCACATCAAA 58.244 47.368 0.00 0.00 45.76 2.69
519 533 0.975135 TTTCACACCATGGCATTGGG 59.025 50.000 13.04 3.85 41.35 4.12
541 555 0.674581 GGGGCCAAAATGCTTGAAGC 60.675 55.000 10.84 10.84 42.82 3.86
547 561 1.815817 GACGTTGGGGCCAAAATGCT 61.816 55.000 4.39 0.00 37.70 3.79
558 572 2.825532 AGGAATTTGGATTGACGTTGGG 59.174 45.455 0.00 0.00 0.00 4.12
560 574 5.095490 GCTAAGGAATTTGGATTGACGTTG 58.905 41.667 0.00 0.00 0.00 4.10
561 575 4.764823 TGCTAAGGAATTTGGATTGACGTT 59.235 37.500 0.00 0.00 0.00 3.99
592 609 3.276857 CCATCCAGGTTCACTCTGATTG 58.723 50.000 0.00 0.00 34.36 2.67
593 610 2.356535 GCCATCCAGGTTCACTCTGATT 60.357 50.000 0.00 0.00 40.61 2.57
600 617 2.354003 CCAAAATGCCATCCAGGTTCAC 60.354 50.000 0.00 0.00 40.61 3.18
601 618 1.901159 CCAAAATGCCATCCAGGTTCA 59.099 47.619 0.00 0.00 40.61 3.18
603 620 1.278537 CCCAAAATGCCATCCAGGTT 58.721 50.000 0.00 0.00 40.61 3.50
654 691 2.107950 AAATCAACGATCCCTGCGAA 57.892 45.000 0.00 0.00 0.00 4.70
655 692 2.006888 GAAAATCAACGATCCCTGCGA 58.993 47.619 0.00 0.00 0.00 5.10
656 693 2.009774 AGAAAATCAACGATCCCTGCG 58.990 47.619 0.00 0.00 0.00 5.18
699 736 9.374838 AGACATCATTTCAAATAATTTTGCTCC 57.625 29.630 0.00 0.00 41.66 4.70
702 739 8.392612 CCCAGACATCATTTCAAATAATTTTGC 58.607 33.333 0.00 0.00 41.66 3.68
720 757 2.905736 CCAAAATTTGACCCCCAGACAT 59.094 45.455 7.37 0.00 0.00 3.06
727 764 3.632643 ATCATGCCAAAATTTGACCCC 57.367 42.857 7.37 0.00 0.00 4.95
730 767 9.332301 CACAATTTTATCATGCCAAAATTTGAC 57.668 29.630 19.11 0.00 40.56 3.18
731 768 8.512956 CCACAATTTTATCATGCCAAAATTTGA 58.487 29.630 19.11 0.00 40.56 2.69
744 781 5.065859 CACCGTATCTGCCACAATTTTATCA 59.934 40.000 0.00 0.00 0.00 2.15
747 784 4.580868 TCACCGTATCTGCCACAATTTTA 58.419 39.130 0.00 0.00 0.00 1.52
969 1049 2.703409 GATGCGATGCGTGGTCAC 59.297 61.111 0.00 0.00 0.00 3.67
970 1050 2.885164 CGATGCGATGCGTGGTCA 60.885 61.111 0.00 0.00 0.00 4.02
971 1051 2.885644 ACGATGCGATGCGTGGTC 60.886 61.111 0.00 0.00 39.56 4.02
1035 1120 4.394712 GGACAGTGGGACAGCGGG 62.395 72.222 0.00 0.00 41.80 6.13
1307 1715 0.892358 TCGGTAGCGAGGACACACTT 60.892 55.000 13.94 0.00 0.00 3.16
1346 1754 0.949397 CCGCATTCTGCACATGCTAT 59.051 50.000 19.29 0.00 45.36 2.97
1347 1755 0.392863 ACCGCATTCTGCACATGCTA 60.393 50.000 19.29 0.00 45.36 3.49
1351 1759 1.750399 GGGACCGCATTCTGCACAT 60.750 57.895 0.00 0.00 45.36 3.21
1420 1828 3.249189 AAAGCGGACCTGCTCCCA 61.249 61.111 10.58 0.00 46.60 4.37
1440 1848 3.619347 CGCAAATTCAAACAAGCGC 57.381 47.368 0.00 0.00 38.68 5.92
1441 1849 0.179302 CGCGCAAATTCAAACAAGCG 60.179 50.000 8.75 0.00 46.99 4.68
1457 1876 0.803768 AGAGCTACACATGAAGCGCG 60.804 55.000 0.00 0.00 42.51 6.86
1477 1896 5.067674 AGCTAGTTTGCATCAGTCAAAAACA 59.932 36.000 0.00 0.00 35.49 2.83
1491 1910 1.399791 GCTCATCCACAGCTAGTTTGC 59.600 52.381 0.00 0.00 33.75 3.68
1514 1936 3.284323 ACACTACAGCTAACGACACAG 57.716 47.619 0.00 0.00 0.00 3.66
1538 1960 7.688372 ACTTAATCATATTTGAACGCAGTGAG 58.312 34.615 0.00 0.00 45.00 3.51
1544 1966 9.646336 AATTACGACTTAATCATATTTGAACGC 57.354 29.630 0.00 0.00 34.96 4.84
1626 2056 1.213537 CAAACTGCTGCCCCATTCG 59.786 57.895 0.00 0.00 0.00 3.34
1728 2172 4.900635 AAAGAAGCAAGGTTGTGTACAG 57.099 40.909 0.00 0.00 0.00 2.74
1753 2197 5.766222 TCTTCCGTTCTCAGTTAACAGTAC 58.234 41.667 8.61 0.91 0.00 2.73
1761 2205 3.637229 TGTCTCTTCTTCCGTTCTCAGTT 59.363 43.478 0.00 0.00 0.00 3.16
1765 2209 4.810790 TCAATGTCTCTTCTTCCGTTCTC 58.189 43.478 0.00 0.00 0.00 2.87
1776 2220 4.458295 CAGCTGACCATTTCAATGTCTCTT 59.542 41.667 8.42 0.00 34.60 2.85
1783 2227 6.435277 AGTGTAAATCAGCTGACCATTTCAAT 59.565 34.615 20.97 14.11 32.21 2.57
1791 2235 8.494016 AAGTATAAAGTGTAAATCAGCTGACC 57.506 34.615 20.97 8.03 0.00 4.02
1847 2291 4.801891 AGATTTTACAGCATGCACTTGTG 58.198 39.130 21.98 11.50 42.53 3.33
1848 2292 5.458041 AAGATTTTACAGCATGCACTTGT 57.542 34.783 21.98 17.74 42.53 3.16
1970 2453 9.182214 AGTTCAAATGTTGCACTCTGATAATAT 57.818 29.630 0.00 0.00 31.45 1.28
1975 2458 5.779529 AAGTTCAAATGTTGCACTCTGAT 57.220 34.783 0.00 0.00 36.12 2.90
2054 2538 8.548880 AGCAGAAATATTACTAAGTACCTCCA 57.451 34.615 0.00 0.00 0.00 3.86
2055 2539 9.833917 AAAGCAGAAATATTACTAAGTACCTCC 57.166 33.333 0.00 0.00 0.00 4.30
2101 2613 4.581077 TCAATTGCTGCACATGTAACAA 57.419 36.364 0.00 1.15 0.00 2.83
2104 2616 4.380761 GGTCATCAATTGCTGCACATGTAA 60.381 41.667 0.00 0.00 0.00 2.41
2107 2621 2.094442 TGGTCATCAATTGCTGCACATG 60.094 45.455 0.00 4.55 0.00 3.21
2135 2649 8.401490 ACAAGAAGCTGTTAAGAAAATCAGAT 57.599 30.769 0.00 0.00 0.00 2.90
2196 2711 2.032965 TACCACTTCCACTTAGCCCA 57.967 50.000 0.00 0.00 0.00 5.36
2278 2811 7.178451 TCAATCCACTAGAATGTGAGTAACTGA 59.822 37.037 0.00 0.00 40.12 3.41
2357 2902 6.585416 AGACAGAAAACTGGCAATCAAATTT 58.415 32.000 5.87 0.00 34.06 1.82
2383 2929 6.389906 CCTAACTAAAACTTGGCAATGAAGG 58.610 40.000 0.00 0.00 0.00 3.46
2409 3125 9.185192 GATTGCAAACAAATATCATAGCCTAAC 57.815 33.333 1.71 0.00 39.77 2.34
2492 3220 4.764172 AGACAATGGCAATCAGAGTAGAC 58.236 43.478 0.00 0.00 0.00 2.59
2523 3252 3.565902 ACTAAGCAAGAGAAACAACAGGC 59.434 43.478 0.00 0.00 0.00 4.85
2524 3253 5.514279 CAACTAAGCAAGAGAAACAACAGG 58.486 41.667 0.00 0.00 0.00 4.00
2577 3318 7.779754 ATATTTCCATGCAGGCATACAATAA 57.220 32.000 6.42 0.00 37.29 1.40
2583 3324 6.728089 TCAAAATATTTCCATGCAGGCATA 57.272 33.333 6.42 0.00 37.29 3.14
2697 3444 2.334023 AGGCCAAATTAGCACCCAAAA 58.666 42.857 5.01 0.00 0.00 2.44
3191 3946 8.845227 TGTTTGAACATGAACTAAGCTCATAAA 58.155 29.630 0.00 0.00 32.20 1.40
3281 4047 8.879759 CGTCAAAATGTCATATAAGTACCTGTT 58.120 33.333 0.00 0.00 0.00 3.16
3352 4118 7.441760 TGAGCGGTAACTTTGTCTGTTTTATTA 59.558 33.333 0.00 0.00 0.00 0.98
3515 4285 7.761249 AGATGCAGTAAATAAAGGCAAAATCAC 59.239 33.333 0.00 0.00 38.08 3.06
3558 4329 9.405587 CGTTTCTTTCTAGCATAATTGGAAAAA 57.594 29.630 0.00 0.00 0.00 1.94
3563 4334 9.274065 GTAAACGTTTCTTTCTAGCATAATTGG 57.726 33.333 18.42 0.00 0.00 3.16
3579 4350 7.723270 ACAGAACGTACATATGTAAACGTTTC 58.277 34.615 33.42 27.33 40.69 2.78
3621 4402 4.584874 TGGAATCGCCTCAGTTATTTCAA 58.415 39.130 0.00 0.00 37.63 2.69
3703 4484 9.221933 TGTAGAATTTTAGAATCGCTTTAACCA 57.778 29.630 0.00 0.00 0.00 3.67
3794 4575 3.242549 TCATCAGTGATGTCAGCAGAC 57.757 47.619 28.03 1.64 45.19 3.51
3932 4713 0.612174 TCTAAGCCCTGACGTGCTCT 60.612 55.000 0.00 0.00 36.66 4.09
3960 4741 7.639113 AGAGATAAACACTACTCTGAAGGAG 57.361 40.000 0.00 0.00 46.87 3.69
4002 4788 3.130516 TCTTTCATCAGGTAGTCGCGAAT 59.869 43.478 15.46 15.46 0.00 3.34
4049 4841 5.874810 AGTGCAAATCGTTACACATCTACAT 59.125 36.000 0.00 0.00 35.47 2.29
4251 5054 5.183228 TCCATTCCTCCGACAAGTATTTTC 58.817 41.667 0.00 0.00 0.00 2.29
4252 5055 5.174037 TCCATTCCTCCGACAAGTATTTT 57.826 39.130 0.00 0.00 0.00 1.82
4258 5061 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
4264 5067 6.865834 ACATCTAGATACATCCATTCCTCC 57.134 41.667 4.54 0.00 0.00 4.30
4317 5120 5.798934 CCGGAAATACTCGTCGGATAAATAG 59.201 44.000 0.00 0.00 42.94 1.73
4318 5121 5.473162 TCCGGAAATACTCGTCGGATAAATA 59.527 40.000 0.00 0.00 43.84 1.40
4319 5122 4.279169 TCCGGAAATACTCGTCGGATAAAT 59.721 41.667 0.00 0.00 43.84 1.40
4320 5123 3.631686 TCCGGAAATACTCGTCGGATAAA 59.368 43.478 0.00 0.00 43.84 1.40
4322 5125 2.849942 TCCGGAAATACTCGTCGGATA 58.150 47.619 0.00 0.00 43.84 2.59
4324 5127 0.734889 GTCCGGAAATACTCGTCGGA 59.265 55.000 5.23 0.00 46.06 4.55
4326 5129 0.590732 CCGTCCGGAAATACTCGTCG 60.591 60.000 5.23 1.25 37.50 5.12
4330 5181 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
4332 5183 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4338 5189 0.467659 AATCTACTCCCTCCGTCCGG 60.468 60.000 0.00 0.00 0.00 5.14
4339 5190 1.337387 GAAATCTACTCCCTCCGTCCG 59.663 57.143 0.00 0.00 0.00 4.79
4341 5192 4.467198 TTTGAAATCTACTCCCTCCGTC 57.533 45.455 0.00 0.00 0.00 4.79
4344 5195 5.755849 TCCATTTTGAAATCTACTCCCTCC 58.244 41.667 0.00 0.00 0.00 4.30
4412 5265 1.714794 CGATGCTCCGAGTTGTCTTT 58.285 50.000 0.00 0.00 0.00 2.52
4515 5485 8.901793 ACAATGCAAAGTTTGACCAAATTTATT 58.098 25.926 19.82 2.75 31.37 1.40
4652 5632 0.752054 TTTTTCTTGTGGCAGCCCAG 59.248 50.000 9.64 2.20 43.18 4.45
4696 5681 9.751542 TTTAAATTGATGGTTTGTAATTCACGT 57.248 25.926 0.00 0.00 0.00 4.49
4710 5695 9.696917 AACTTTAAGAGCACTTTAAATTGATGG 57.303 29.630 9.55 0.00 37.53 3.51
4738 5723 4.349663 TTCGTTTGAACAACCAGACTTG 57.650 40.909 0.00 0.00 0.00 3.16
4744 5729 2.028130 AGGCATTCGTTTGAACAACCA 58.972 42.857 0.00 0.00 36.81 3.67
4750 5735 5.310451 AGTAGGTAAAGGCATTCGTTTGAA 58.690 37.500 0.00 0.00 38.76 2.69
4778 5763 9.810231 GCATTCGTTTGAACAATTATTCAATTT 57.190 25.926 12.43 0.00 45.55 1.82
4779 5764 8.442384 GGCATTCGTTTGAACAATTATTCAATT 58.558 29.630 12.43 0.00 45.55 2.32
4780 5765 7.818930 AGGCATTCGTTTGAACAATTATTCAAT 59.181 29.630 12.43 0.00 45.55 2.57
4781 5766 7.151308 AGGCATTCGTTTGAACAATTATTCAA 58.849 30.769 7.80 7.80 44.80 2.69
4782 5767 6.686630 AGGCATTCGTTTGAACAATTATTCA 58.313 32.000 0.00 0.00 36.81 2.57
4783 5768 7.581011 AAGGCATTCGTTTGAACAATTATTC 57.419 32.000 0.00 0.00 36.81 1.75
4784 5769 7.961325 AAAGGCATTCGTTTGAACAATTATT 57.039 28.000 0.00 0.00 36.81 1.40
4785 5770 7.544217 GGTAAAGGCATTCGTTTGAACAATTAT 59.456 33.333 0.00 0.00 36.81 1.28
4786 5771 6.864165 GGTAAAGGCATTCGTTTGAACAATTA 59.136 34.615 0.00 0.00 36.81 1.40
4787 5772 5.694458 GGTAAAGGCATTCGTTTGAACAATT 59.306 36.000 0.00 0.00 36.81 2.32
4788 5773 5.227152 GGTAAAGGCATTCGTTTGAACAAT 58.773 37.500 0.00 0.00 36.81 2.71
4789 5774 4.500035 GGGTAAAGGCATTCGTTTGAACAA 60.500 41.667 0.00 0.00 36.81 2.83
4790 5775 3.004944 GGGTAAAGGCATTCGTTTGAACA 59.995 43.478 0.00 0.00 36.81 3.18
4791 5776 3.004944 TGGGTAAAGGCATTCGTTTGAAC 59.995 43.478 0.00 0.00 36.81 3.18
4792 5777 3.004944 GTGGGTAAAGGCATTCGTTTGAA 59.995 43.478 0.00 0.00 38.76 2.69
4793 5778 2.554893 GTGGGTAAAGGCATTCGTTTGA 59.445 45.455 0.00 0.00 33.06 2.69
4794 5779 2.556622 AGTGGGTAAAGGCATTCGTTTG 59.443 45.455 0.00 0.00 33.06 2.93
4795 5780 2.871453 AGTGGGTAAAGGCATTCGTTT 58.129 42.857 0.00 0.00 34.94 3.60
4796 5781 2.579410 AGTGGGTAAAGGCATTCGTT 57.421 45.000 0.00 0.00 0.00 3.85
4797 5782 2.579410 AAGTGGGTAAAGGCATTCGT 57.421 45.000 0.00 0.00 0.00 3.85
4798 5783 6.687081 TTTATAAGTGGGTAAAGGCATTCG 57.313 37.500 0.00 0.00 0.00 3.34
4799 5784 9.313118 CAATTTTATAAGTGGGTAAAGGCATTC 57.687 33.333 0.00 0.00 0.00 2.67
4800 5785 9.041354 TCAATTTTATAAGTGGGTAAAGGCATT 57.959 29.630 0.00 0.00 30.58 3.56
4801 5786 8.602472 TCAATTTTATAAGTGGGTAAAGGCAT 57.398 30.769 0.00 0.00 30.58 4.40
4802 5787 8.423906 TTCAATTTTATAAGTGGGTAAAGGCA 57.576 30.769 0.00 0.00 30.58 4.75
4852 5837 9.487790 TTTTTCATGGGTAAAATCTGAACATTC 57.512 29.630 0.00 0.00 0.00 2.67
4860 5845 7.891561 TGTTCGATTTTTCATGGGTAAAATCT 58.108 30.769 23.52 6.67 43.20 2.40
4899 5884 7.690952 AAATTGTCATGCTTGCCAATTAAAT 57.309 28.000 18.31 4.55 39.73 1.40
4904 5912 4.693566 CAGAAAATTGTCATGCTTGCCAAT 59.306 37.500 3.27 3.27 33.04 3.16
4941 5949 6.726299 TGGTAAACATGATAATTTTGTCCCCA 59.274 34.615 0.00 0.00 0.00 4.96
4943 5951 8.311109 AGTTGGTAAACATGATAATTTTGTCCC 58.689 33.333 0.00 0.00 38.88 4.46
4955 5963 9.906660 GATGACAAATTTAGTTGGTAAACATGA 57.093 29.630 0.00 0.00 38.88 3.07
4973 5981 6.591935 ACTTTAGTTGAGTGAGGATGACAAA 58.408 36.000 0.00 0.00 0.00 2.83
5029 6037 4.216257 ACAAGTCCTGAATGTTCGGATTTG 59.784 41.667 23.34 23.34 43.79 2.32
5035 6043 1.726791 CCGACAAGTCCTGAATGTTCG 59.273 52.381 0.00 0.00 0.00 3.95
5051 6059 2.812983 GCCCTTAATTATGGACCCCGAC 60.813 54.545 16.98 0.00 0.00 4.79
5053 6061 1.423921 AGCCCTTAATTATGGACCCCG 59.576 52.381 16.98 3.35 0.00 5.73
5061 6069 8.993424 TCTAGAGTCAAAGAAGCCCTTAATTAT 58.007 33.333 0.00 0.00 34.00 1.28
5069 6077 3.100671 TCCTCTAGAGTCAAAGAAGCCC 58.899 50.000 18.42 0.00 0.00 5.19
5070 6078 5.105146 TCAATCCTCTAGAGTCAAAGAAGCC 60.105 44.000 18.42 0.00 0.00 4.35
5071 6079 5.971763 TCAATCCTCTAGAGTCAAAGAAGC 58.028 41.667 18.42 0.00 0.00 3.86
5072 6080 9.097257 GATTTCAATCCTCTAGAGTCAAAGAAG 57.903 37.037 18.42 5.90 0.00 2.85
5108 6116 5.459505 TCAAAGGACCAACATAGGGAAAAA 58.540 37.500 0.00 0.00 0.00 1.94
5109 6117 5.068215 TCAAAGGACCAACATAGGGAAAA 57.932 39.130 0.00 0.00 0.00 2.29
5110 6118 4.733077 TCAAAGGACCAACATAGGGAAA 57.267 40.909 0.00 0.00 0.00 3.13
5111 6119 4.946160 ATCAAAGGACCAACATAGGGAA 57.054 40.909 0.00 0.00 0.00 3.97
5112 6120 4.946160 AATCAAAGGACCAACATAGGGA 57.054 40.909 0.00 0.00 0.00 4.20
5113 6121 7.448469 CCTATAAATCAAAGGACCAACATAGGG 59.552 40.741 0.00 0.00 31.60 3.53
5114 6122 8.217799 TCCTATAAATCAAAGGACCAACATAGG 58.782 37.037 0.00 0.00 34.46 2.57
5115 6123 9.799106 ATCCTATAAATCAAAGGACCAACATAG 57.201 33.333 0.00 0.00 42.08 2.23
5117 6125 8.917088 CAATCCTATAAATCAAAGGACCAACAT 58.083 33.333 0.00 0.00 42.08 2.71
5118 6126 7.893302 ACAATCCTATAAATCAAAGGACCAACA 59.107 33.333 0.00 0.00 42.08 3.33
5119 6127 8.293699 ACAATCCTATAAATCAAAGGACCAAC 57.706 34.615 0.00 0.00 42.08 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.