Multiple sequence alignment - TraesCS7A01G254800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS7A01G254800
chr7A
100.000
2775
0
0
1
2775
241659654
241662428
0.000000e+00
5125
1
TraesCS7A01G254800
chr7D
92.442
1892
85
29
567
2444
229785304
229787151
0.000000e+00
2649
2
TraesCS7A01G254800
chr7D
86.463
229
12
10
2475
2691
229787223
229787444
1.660000e-57
233
3
TraesCS7A01G254800
chr7D
93.204
103
7
0
1
103
229784653
229784755
4.790000e-33
152
4
TraesCS7A01G254800
chr7B
90.404
1907
84
35
580
2448
200349546
200351391
0.000000e+00
2416
5
TraesCS7A01G254800
chr7B
81.690
497
58
19
1918
2397
607319619
607320099
1.560000e-102
383
6
TraesCS7A01G254800
chr7B
88.852
305
13
13
2475
2771
200351460
200351751
3.400000e-94
355
7
TraesCS7A01G254800
chr7B
88.848
269
25
4
1
268
200348884
200349148
2.670000e-85
326
8
TraesCS7A01G254800
chr6B
80.488
533
66
18
1918
2429
614733240
614733755
9.380000e-100
374
9
TraesCS7A01G254800
chr6B
79.496
556
67
26
1918
2448
431500369
431499836
4.400000e-93
351
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS7A01G254800
chr7A
241659654
241662428
2774
False
5125.000000
5125
100.000
1
2775
1
chr7A.!!$F1
2774
1
TraesCS7A01G254800
chr7D
229784653
229787444
2791
False
1011.333333
2649
90.703
1
2691
3
chr7D.!!$F1
2690
2
TraesCS7A01G254800
chr7B
200348884
200351751
2867
False
1032.333333
2416
89.368
1
2771
3
chr7B.!!$F2
2770
3
TraesCS7A01G254800
chr6B
614733240
614733755
515
False
374.000000
374
80.488
1918
2429
1
chr6B.!!$F1
511
4
TraesCS7A01G254800
chr6B
431499836
431500369
533
True
351.000000
351
79.496
1918
2448
1
chr6B.!!$R1
530
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
873
1112
0.32016
GCAGGAAAAAGGCAAGCCAG
60.32
55.0
14.4
0.0
38.92
4.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2477
2812
0.037605
CTAACCGACGCCCTGAAACT
60.038
55.0
0.0
0.0
0.0
2.66
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
30
31
7.542477
GGAGTGCACATGTATCTGTATATGTAC
59.458
40.741
21.04
0.00
39.67
2.90
51
52
4.708177
ACCAATCGATTGTCAGGGATTAG
58.292
43.478
30.71
16.72
36.06
1.73
54
55
5.453903
CCAATCGATTGTCAGGGATTAGAGT
60.454
44.000
30.71
0.00
36.06
3.24
59
60
6.371548
TCGATTGTCAGGGATTAGAGTTTTTG
59.628
38.462
0.00
0.00
0.00
2.44
71
72
6.628919
TTAGAGTTTTTGTTTAGTGGAGGC
57.371
37.500
0.00
0.00
0.00
4.70
72
73
3.889538
AGAGTTTTTGTTTAGTGGAGGCC
59.110
43.478
0.00
0.00
0.00
5.19
130
248
3.332034
GGCATGCAATTTCTTTTCTGCT
58.668
40.909
21.36
0.00
35.78
4.24
133
251
6.275335
GGCATGCAATTTCTTTTCTGCTATA
58.725
36.000
21.36
0.00
35.78
1.31
134
252
6.199719
GGCATGCAATTTCTTTTCTGCTATAC
59.800
38.462
21.36
0.00
35.78
1.47
135
253
6.976925
GCATGCAATTTCTTTTCTGCTATACT
59.023
34.615
14.21
0.00
35.78
2.12
136
254
8.131100
GCATGCAATTTCTTTTCTGCTATACTA
58.869
33.333
14.21
0.00
35.78
1.82
261
379
7.189693
GACATGTTGTCACAGAAGTTAATGA
57.810
36.000
0.00
0.00
46.22
2.57
268
386
7.397892
TGTCACAGAAGTTAATGACCAAAAA
57.602
32.000
9.83
0.00
40.63
1.94
275
402
2.663826
TAATGACCAAAAATGCGGCC
57.336
45.000
0.00
0.00
0.00
6.13
296
423
3.292460
CCGCCAATACCCAAATAGGAAA
58.708
45.455
0.00
0.00
41.22
3.13
298
425
4.160626
CCGCCAATACCCAAATAGGAAAAA
59.839
41.667
0.00
0.00
41.22
1.94
345
581
9.520515
AATGTGTGTGTAATCTTAATTCCTCTT
57.479
29.630
0.00
0.00
0.00
2.85
397
634
1.030457
GCTCTGCCCATCCATCAAAG
58.970
55.000
0.00
0.00
0.00
2.77
426
663
3.566322
TGGTTTTATTTGGACACACCTCG
59.434
43.478
0.00
0.00
39.86
4.63
442
679
3.310774
CACCTCGCTCCATTCATAAACTG
59.689
47.826
0.00
0.00
0.00
3.16
447
684
3.374988
CGCTCCATTCATAAACTGCAAGA
59.625
43.478
0.00
0.00
37.43
3.02
483
720
6.462073
TGCGAGTACAAAAGTTACATTCTC
57.538
37.500
0.00
0.00
0.00
2.87
511
748
8.937634
ATTTATATCTTTGGTCGAAGTAACGT
57.062
30.769
0.00
0.00
34.70
3.99
513
750
9.507280
TTTATATCTTTGGTCGAAGTAACGTAG
57.493
33.333
0.00
0.00
34.70
3.51
600
837
8.169977
ACCAAGTTGCATGTATATTATCCTTG
57.830
34.615
0.00
0.00
0.00
3.61
601
838
7.231317
ACCAAGTTGCATGTATATTATCCTTGG
59.769
37.037
0.00
0.00
46.63
3.61
618
855
4.278669
TCCTTGGTCTGATAATCTACGAGC
59.721
45.833
0.00
0.00
0.00
5.03
633
870
5.885881
TCTACGAGCTTGAGAAAGAGATTC
58.114
41.667
8.31
0.00
38.39
2.52
644
881
4.260170
AGAAAGAGATTCGCAAGCAATCT
58.740
39.130
14.92
14.92
42.64
2.40
823
1062
3.249986
TCCGACGGTGGGTAATTAAAG
57.750
47.619
14.79
0.00
0.00
1.85
836
1075
7.936584
TGGGTAATTAAAGCCAATTAATCTCG
58.063
34.615
0.00
0.00
43.83
4.04
868
1107
2.287769
GCTTTTGCAGGAAAAAGGCAA
58.712
42.857
13.07
0.00
44.05
4.52
873
1112
0.320160
GCAGGAAAAAGGCAAGCCAG
60.320
55.000
14.40
0.00
38.92
4.85
924
1163
2.137528
CCCCACCCAAAGCCGTTTT
61.138
57.895
0.00
0.00
0.00
2.43
1002
1242
2.593026
CTATTCGCTCTCCCTCTCCTT
58.407
52.381
0.00
0.00
0.00
3.36
1003
1243
1.408969
ATTCGCTCTCCCTCTCCTTC
58.591
55.000
0.00
0.00
0.00
3.46
1027
1267
0.856982
TGATCTCTCCTCCTCCCCTC
59.143
60.000
0.00
0.00
0.00
4.30
1028
1268
0.114364
GATCTCTCCTCCTCCCCTCC
59.886
65.000
0.00
0.00
0.00
4.30
1029
1269
1.376249
ATCTCTCCTCCTCCCCTCCC
61.376
65.000
0.00
0.00
0.00
4.30
1030
1270
3.036959
TCTCCTCCTCCCCTCCCC
61.037
72.222
0.00
0.00
0.00
4.81
1047
1287
1.431633
CCCCTCCCCAACCTAAGTTTT
59.568
52.381
0.00
0.00
32.45
2.43
1048
1288
2.158219
CCCCTCCCCAACCTAAGTTTTT
60.158
50.000
0.00
0.00
32.45
1.94
1049
1289
3.162666
CCCTCCCCAACCTAAGTTTTTC
58.837
50.000
0.00
0.00
32.45
2.29
1076
1316
1.380515
CGGCCTCTTCTCCTCTCCA
60.381
63.158
0.00
0.00
0.00
3.86
1100
1349
0.740737
CCAACCATCTCCCGCAATTC
59.259
55.000
0.00
0.00
0.00
2.17
1169
1419
3.209812
CCGCCGATCAGGACGAGA
61.210
66.667
15.78
0.00
45.00
4.04
1316
1566
3.827898
GTGGCGGACGAGGAGGAG
61.828
72.222
0.00
0.00
0.00
3.69
1346
1608
3.151022
GAGGAGGAGCCCAGGACG
61.151
72.222
0.00
0.00
37.37
4.79
1496
1758
1.874019
CTCCGCCGTCTTCATGTCG
60.874
63.158
0.00
0.00
0.00
4.35
1677
1939
3.491652
GCGCTGCGTTCCTCTTCC
61.492
66.667
24.04
0.00
0.00
3.46
1733
1995
0.110486
GGTTCCCACGGCCATGATAT
59.890
55.000
0.00
0.00
0.00
1.63
1734
1996
1.349688
GGTTCCCACGGCCATGATATA
59.650
52.381
0.00
0.00
0.00
0.86
1735
1997
2.615493
GGTTCCCACGGCCATGATATAG
60.615
54.545
0.00
0.00
0.00
1.31
1851
2113
9.476202
AAATTGTACTAGAATTGAAAAGGTTGC
57.524
29.630
0.00
0.00
0.00
4.17
1855
2119
9.515226
TGTACTAGAATTGAAAAGGTTGCTATT
57.485
29.630
0.00
0.00
0.00
1.73
1913
2177
7.971183
AAGAACAGGAGTTGTAAGAGAATTC
57.029
36.000
0.00
0.00
39.73
2.17
2037
2314
3.720818
CGCATCTCGAATTTTACACATGC
59.279
43.478
0.00
0.00
41.67
4.06
2085
2363
1.349688
TCGGTGGTGCCAATTAACTCT
59.650
47.619
0.00
0.00
36.97
3.24
2103
2381
1.349026
TCTTCTGGGCCTGAAGAACAG
59.651
52.381
38.28
22.57
42.45
3.16
2301
2602
3.813724
CAGGTGGAGGGGATGGGC
61.814
72.222
0.00
0.00
0.00
5.36
2315
2616
2.576615
GATGGGCTGGGATGTACTTTC
58.423
52.381
0.00
0.00
0.00
2.62
2336
2637
1.202405
GGTTGTTTTGTCCCAGCACAG
60.202
52.381
0.00
0.00
0.00
3.66
2337
2638
1.110442
TTGTTTTGTCCCAGCACAGG
58.890
50.000
0.00
0.00
0.00
4.00
2338
2639
1.363807
GTTTTGTCCCAGCACAGGC
59.636
57.895
0.00
0.00
41.61
4.85
2339
2640
1.076412
TTTTGTCCCAGCACAGGCA
60.076
52.632
0.00
0.00
44.61
4.75
2340
2641
1.391157
TTTTGTCCCAGCACAGGCAC
61.391
55.000
0.00
0.00
44.61
5.01
2341
2642
2.564561
TTTGTCCCAGCACAGGCACA
62.565
55.000
0.00
0.00
44.61
4.57
2346
2647
3.667282
CAGCACAGGCACAGCACC
61.667
66.667
0.00
0.00
44.61
5.01
2448
2759
0.627451
AAATCCCCAGCTGCATCTGA
59.373
50.000
18.94
0.00
36.19
3.27
2449
2760
0.183014
AATCCCCAGCTGCATCTGAG
59.817
55.000
18.94
5.55
36.19
3.35
2474
2809
1.608590
CGGCATTGGTCAGTTTCAGTT
59.391
47.619
0.00
0.00
0.00
3.16
2475
2810
2.034558
CGGCATTGGTCAGTTTCAGTTT
59.965
45.455
0.00
0.00
0.00
2.66
2476
2811
3.642705
GGCATTGGTCAGTTTCAGTTTC
58.357
45.455
0.00
0.00
0.00
2.78
2477
2812
3.068024
GGCATTGGTCAGTTTCAGTTTCA
59.932
43.478
0.00
0.00
0.00
2.69
2478
2813
4.293415
GCATTGGTCAGTTTCAGTTTCAG
58.707
43.478
0.00
0.00
0.00
3.02
2479
2814
4.202050
GCATTGGTCAGTTTCAGTTTCAGT
60.202
41.667
0.00
0.00
0.00
3.41
2480
2815
5.679638
GCATTGGTCAGTTTCAGTTTCAGTT
60.680
40.000
0.00
0.00
0.00
3.16
2481
2816
5.975693
TTGGTCAGTTTCAGTTTCAGTTT
57.024
34.783
0.00
0.00
0.00
2.66
2482
2817
5.560966
TGGTCAGTTTCAGTTTCAGTTTC
57.439
39.130
0.00
0.00
0.00
2.78
2483
2818
5.007034
TGGTCAGTTTCAGTTTCAGTTTCA
58.993
37.500
0.00
0.00
0.00
2.69
2495
2849
0.320073
CAGTTTCAGGGCGTCGGTTA
60.320
55.000
0.00
0.00
0.00
2.85
2505
2859
1.435577
GCGTCGGTTAGGATTGTTGT
58.564
50.000
0.00
0.00
0.00
3.32
2506
2860
1.127951
GCGTCGGTTAGGATTGTTGTG
59.872
52.381
0.00
0.00
0.00
3.33
2507
2861
1.127951
CGTCGGTTAGGATTGTTGTGC
59.872
52.381
0.00
0.00
0.00
4.57
2508
2862
2.147958
GTCGGTTAGGATTGTTGTGCA
58.852
47.619
0.00
0.00
0.00
4.57
2531
2885
2.618816
GCATGGAGGTGTTGAGATCCAA
60.619
50.000
0.00
0.00
44.63
3.53
2532
2886
3.689347
CATGGAGGTGTTGAGATCCAAA
58.311
45.455
0.00
0.00
44.63
3.28
2534
2888
2.087646
GGAGGTGTTGAGATCCAAAGC
58.912
52.381
0.00
0.00
36.36
3.51
2535
2889
1.734465
GAGGTGTTGAGATCCAAAGCG
59.266
52.381
0.00
0.00
36.36
4.68
2536
2890
1.347707
AGGTGTTGAGATCCAAAGCGA
59.652
47.619
0.00
0.00
36.36
4.93
2537
2891
1.734465
GGTGTTGAGATCCAAAGCGAG
59.266
52.381
0.00
0.00
36.36
5.03
2542
2896
1.753649
TGAGATCCAAAGCGAGAGGAG
59.246
52.381
0.00
0.00
34.40
3.69
2543
2897
1.068434
GAGATCCAAAGCGAGAGGAGG
59.932
57.143
0.00
0.00
34.40
4.30
2545
2899
1.341156
ATCCAAAGCGAGAGGAGGGG
61.341
60.000
0.00
0.00
34.40
4.79
2547
2901
1.990060
CAAAGCGAGAGGAGGGGGA
60.990
63.158
0.00
0.00
0.00
4.81
2548
2902
1.687493
AAAGCGAGAGGAGGGGGAG
60.687
63.158
0.00
0.00
0.00
4.30
2549
2903
3.687828
AAGCGAGAGGAGGGGGAGG
62.688
68.421
0.00
0.00
0.00
4.30
2571
2931
1.226435
GGTGCGTTGCGTGTTTGAA
60.226
52.632
0.00
0.00
0.00
2.69
2593
2953
2.669794
AGCCATGGATGGATCCTGACC
61.670
57.143
18.40
13.50
44.64
4.02
2615
2975
1.751924
CGAGTAAGTGGGAGGGAGAAG
59.248
57.143
0.00
0.00
0.00
2.85
2645
3009
1.603931
GCTGAAAGTTTCCTGGCTTGC
60.604
52.381
13.01
3.04
35.30
4.01
2709
3073
2.428890
CAGAACGCAGGAATAGGTCTCT
59.571
50.000
0.00
0.00
27.96
3.10
2711
3075
1.025812
ACGCAGGAATAGGTCTCTCG
58.974
55.000
0.00
0.00
0.00
4.04
2712
3076
0.318275
CGCAGGAATAGGTCTCTCGC
60.318
60.000
0.00
0.00
0.00
5.03
2713
3077
0.032815
GCAGGAATAGGTCTCTCGCC
59.967
60.000
0.00
0.00
0.00
5.54
2714
3078
0.676736
CAGGAATAGGTCTCTCGCCC
59.323
60.000
0.00
0.00
0.00
6.13
2715
3079
0.470268
AGGAATAGGTCTCTCGCCCC
60.470
60.000
0.00
0.00
0.00
5.80
2716
3080
1.473497
GGAATAGGTCTCTCGCCCCC
61.473
65.000
0.00
0.00
0.00
5.40
2717
3081
0.470268
GAATAGGTCTCTCGCCCCCT
60.470
60.000
0.00
0.00
0.00
4.79
2771
3135
1.101049
GCGTGAGAGGGAGAGAGAGG
61.101
65.000
0.00
0.00
0.00
3.69
2772
3136
0.465460
CGTGAGAGGGAGAGAGAGGG
60.465
65.000
0.00
0.00
0.00
4.30
2773
3137
0.106217
GTGAGAGGGAGAGAGAGGGG
60.106
65.000
0.00
0.00
0.00
4.79
2774
3138
1.152546
GAGAGGGAGAGAGAGGGGC
60.153
68.421
0.00
0.00
0.00
5.80
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
9
10
8.777865
ATTGGTACATATACAGATACATGTGC
57.222
34.615
9.11
0.00
39.30
4.57
30
31
4.960938
TCTAATCCCTGACAATCGATTGG
58.039
43.478
34.69
20.81
41.96
3.16
51
52
3.889538
AGGCCTCCACTAAACAAAAACTC
59.110
43.478
0.00
0.00
0.00
3.01
54
55
5.202004
TGTAAGGCCTCCACTAAACAAAAA
58.798
37.500
5.23
0.00
0.00
1.94
59
60
3.697619
ACTGTAAGGCCTCCACTAAAC
57.302
47.619
5.23
0.00
39.30
2.01
71
72
4.848562
GGAAAACTTCCCAACTGTAAGG
57.151
45.455
0.00
0.00
44.30
2.69
247
365
6.129115
CGCATTTTTGGTCATTAACTTCTGTG
60.129
38.462
0.00
0.00
0.00
3.66
249
367
5.345741
CCGCATTTTTGGTCATTAACTTCTG
59.654
40.000
0.00
0.00
0.00
3.02
251
369
4.091365
GCCGCATTTTTGGTCATTAACTTC
59.909
41.667
0.00
0.00
0.00
3.01
275
402
2.649531
TCCTATTTGGGTATTGGCGG
57.350
50.000
0.00
0.00
36.20
6.13
325
561
8.049117
AGATGCAAGAGGAATTAAGATTACACA
58.951
33.333
0.00
0.00
0.00
3.72
326
562
8.443953
AGATGCAAGAGGAATTAAGATTACAC
57.556
34.615
0.00
0.00
0.00
2.90
345
581
7.077605
CGAGTGAAATTTTGTCTTTAGATGCA
58.922
34.615
0.00
0.00
0.00
3.96
397
634
4.806775
GTGTCCAAATAAAACCAACACCAC
59.193
41.667
0.00
0.00
31.64
4.16
426
663
4.970662
TCTTGCAGTTTATGAATGGAGC
57.029
40.909
0.00
0.00
0.00
4.70
442
679
6.322491
ACTCGCAAAAGGTAAATAATCTTGC
58.678
36.000
0.00
0.00
35.49
4.01
505
742
8.435430
GTCCACCTAAATTTGTAACTACGTTAC
58.565
37.037
0.00
9.35
45.80
2.50
511
748
7.444299
ACTTCGTCCACCTAAATTTGTAACTA
58.556
34.615
0.00
0.00
0.00
2.24
512
749
6.293698
ACTTCGTCCACCTAAATTTGTAACT
58.706
36.000
0.00
0.00
0.00
2.24
513
750
6.549912
ACTTCGTCCACCTAAATTTGTAAC
57.450
37.500
0.00
0.00
0.00
2.50
514
751
7.571080
AAACTTCGTCCACCTAAATTTGTAA
57.429
32.000
0.00
0.00
0.00
2.41
571
808
9.816354
GGATAATATACATGCAACTTGGTTTTT
57.184
29.630
0.00
0.00
0.00
1.94
572
809
9.200817
AGGATAATATACATGCAACTTGGTTTT
57.799
29.630
0.00
0.00
0.00
2.43
573
810
8.766994
AGGATAATATACATGCAACTTGGTTT
57.233
30.769
0.00
0.00
0.00
3.27
574
811
8.632679
CAAGGATAATATACATGCAACTTGGTT
58.367
33.333
0.00
0.00
0.00
3.67
575
812
7.231317
CCAAGGATAATATACATGCAACTTGGT
59.769
37.037
0.00
0.00
43.67
3.67
576
813
7.596494
CCAAGGATAATATACATGCAACTTGG
58.404
38.462
0.00
0.00
43.34
3.61
577
814
8.169977
ACCAAGGATAATATACATGCAACTTG
57.830
34.615
0.00
0.00
33.37
3.16
578
815
8.220559
AGACCAAGGATAATATACATGCAACTT
58.779
33.333
0.00
0.00
0.00
2.66
579
816
7.663081
CAGACCAAGGATAATATACATGCAACT
59.337
37.037
0.00
0.00
0.00
3.16
580
817
7.661437
TCAGACCAAGGATAATATACATGCAAC
59.339
37.037
0.00
0.00
0.00
4.17
581
818
7.744733
TCAGACCAAGGATAATATACATGCAA
58.255
34.615
0.00
0.00
0.00
4.08
582
819
7.315066
TCAGACCAAGGATAATATACATGCA
57.685
36.000
0.00
0.00
0.00
3.96
600
837
5.239744
TCTCAAGCTCGTAGATTATCAGACC
59.760
44.000
0.00
0.00
33.89
3.85
601
838
6.307031
TCTCAAGCTCGTAGATTATCAGAC
57.693
41.667
0.00
0.00
33.89
3.51
633
870
1.089920
AGTTGCCTAGATTGCTTGCG
58.910
50.000
0.00
0.00
0.00
4.85
660
897
5.221048
GGGCATTTGCGTACTTTGAATAGAT
60.221
40.000
0.00
0.00
43.26
1.98
734
971
6.703607
GTGTTCCAGATATCACTTGGACATAG
59.296
42.308
10.85
0.00
0.00
2.23
735
972
6.408092
GGTGTTCCAGATATCACTTGGACATA
60.408
42.308
10.85
0.00
0.00
2.29
736
973
5.431765
GTGTTCCAGATATCACTTGGACAT
58.568
41.667
10.85
0.00
0.00
3.06
737
974
4.323485
GGTGTTCCAGATATCACTTGGACA
60.323
45.833
10.85
9.78
0.00
4.02
738
975
4.192317
GGTGTTCCAGATATCACTTGGAC
58.808
47.826
10.85
7.86
0.00
4.02
787
1026
1.156736
CGGATCAGGCGTTGTCTTTT
58.843
50.000
0.00
0.00
0.00
2.27
823
1062
6.035843
TGAAGAAAATGCGAGATTAATTGGC
58.964
36.000
0.00
0.00
0.00
4.52
836
1075
3.185797
CCTGCAAAAGCTGAAGAAAATGC
59.814
43.478
0.00
0.00
31.15
3.56
894
1133
3.621682
TGGGTGGGGTAAGTTGAATTT
57.378
42.857
0.00
0.00
0.00
1.82
924
1163
2.588620
GCCCGGAGAGAGAAAGAGATA
58.411
52.381
0.73
0.00
0.00
1.98
1002
1242
2.176798
GGAGGAGGAGAGATCAAGGAGA
59.823
54.545
0.00
0.00
0.00
3.71
1003
1243
2.597455
GGAGGAGGAGAGATCAAGGAG
58.403
57.143
0.00
0.00
0.00
3.69
1027
1267
1.081481
AAACTTAGGTTGGGGAGGGG
58.919
55.000
0.00
0.00
35.63
4.79
1028
1268
2.992847
AAAACTTAGGTTGGGGAGGG
57.007
50.000
0.00
0.00
35.63
4.30
1029
1269
3.162666
GGAAAAACTTAGGTTGGGGAGG
58.837
50.000
0.00
0.00
35.63
4.30
1030
1270
3.162666
GGGAAAAACTTAGGTTGGGGAG
58.837
50.000
0.00
0.00
35.63
4.30
1076
1316
2.971598
CGGGAGATGGTTGGGTGCT
61.972
63.158
0.00
0.00
0.00
4.40
1109
1358
1.033574
CGGGTGTAGAGGTCATCTCC
58.966
60.000
0.00
0.00
43.44
3.71
1110
1359
0.386113
GCGGGTGTAGAGGTCATCTC
59.614
60.000
0.00
0.00
42.75
2.75
1111
1360
1.384989
CGCGGGTGTAGAGGTCATCT
61.385
60.000
0.00
0.00
42.47
2.90
1252
1502
4.148825
CCTCTTCCTCCGCCACCG
62.149
72.222
0.00
0.00
0.00
4.94
1255
1505
3.003173
CCACCTCTTCCTCCGCCA
61.003
66.667
0.00
0.00
0.00
5.69
1308
1558
0.996762
TCCTCCTCCTCCTCCTCCTC
60.997
65.000
0.00
0.00
0.00
3.71
1309
1559
0.998945
CTCCTCCTCCTCCTCCTCCT
60.999
65.000
0.00
0.00
0.00
3.69
1310
1560
1.541672
CTCCTCCTCCTCCTCCTCC
59.458
68.421
0.00
0.00
0.00
4.30
1311
1561
0.996762
TCCTCCTCCTCCTCCTCCTC
60.997
65.000
0.00
0.00
0.00
3.71
1312
1562
0.998945
CTCCTCCTCCTCCTCCTCCT
60.999
65.000
0.00
0.00
0.00
3.69
1313
1563
1.541672
CTCCTCCTCCTCCTCCTCC
59.458
68.421
0.00
0.00
0.00
4.30
1314
1564
0.996762
TCCTCCTCCTCCTCCTCCTC
60.997
65.000
0.00
0.00
0.00
3.71
1315
1565
0.998945
CTCCTCCTCCTCCTCCTCCT
60.999
65.000
0.00
0.00
0.00
3.69
1316
1566
1.541672
CTCCTCCTCCTCCTCCTCC
59.458
68.421
0.00
0.00
0.00
4.30
1570
1832
2.369257
CTACAGCGCCGATCCATGGT
62.369
60.000
12.58
0.00
0.00
3.55
1677
1939
7.375544
CGCAAGAAAGAGAAAGAAAGAAAGAAG
59.624
37.037
0.00
0.00
43.02
2.85
1913
2177
6.423001
GCTGTAATAGTCGGTAATTAACAGGG
59.577
42.308
0.64
0.00
0.00
4.45
1995
2272
1.474077
GGCAGGCACAAGAATCGAATT
59.526
47.619
0.00
0.00
0.00
2.17
1996
2273
1.098050
GGCAGGCACAAGAATCGAAT
58.902
50.000
0.00
0.00
0.00
3.34
2037
2314
1.845809
GCCGTTTGTCAGACTGCCAG
61.846
60.000
1.31
0.00
0.00
4.85
2085
2363
1.349026
CTCTGTTCTTCAGGCCCAGAA
59.651
52.381
0.00
3.15
43.76
3.02
2301
2602
3.053831
ACAACCGAAAGTACATCCCAG
57.946
47.619
0.00
0.00
0.00
4.45
2315
2616
0.248866
GTGCTGGGACAAAACAACCG
60.249
55.000
0.00
0.00
38.70
4.44
2336
2637
4.314440
TCTCACCGGTGCTGTGCC
62.314
66.667
30.25
0.00
33.71
5.01
2337
2638
2.740055
CTCTCACCGGTGCTGTGC
60.740
66.667
30.25
0.00
33.71
4.57
2338
2639
1.665916
CACTCTCACCGGTGCTGTG
60.666
63.158
30.25
28.23
35.01
3.66
2339
2640
1.399744
TTCACTCTCACCGGTGCTGT
61.400
55.000
30.25
22.56
33.91
4.40
2340
2641
0.668706
CTTCACTCTCACCGGTGCTG
60.669
60.000
30.25
23.01
33.91
4.41
2341
2642
0.827925
TCTTCACTCTCACCGGTGCT
60.828
55.000
30.25
8.85
33.91
4.40
2346
2647
2.163509
TCTTCCTCTTCACTCTCACCG
58.836
52.381
0.00
0.00
0.00
4.94
2444
2755
0.973632
ACCAATGCCGTACACTCAGA
59.026
50.000
0.00
0.00
0.00
3.27
2448
2759
0.685097
ACTGACCAATGCCGTACACT
59.315
50.000
0.00
0.00
0.00
3.55
2449
2760
1.519408
AACTGACCAATGCCGTACAC
58.481
50.000
0.00
0.00
0.00
2.90
2474
2809
1.301401
CCGACGCCCTGAAACTGAA
60.301
57.895
0.00
0.00
0.00
3.02
2475
2810
2.035237
AACCGACGCCCTGAAACTGA
62.035
55.000
0.00
0.00
0.00
3.41
2476
2811
0.320073
TAACCGACGCCCTGAAACTG
60.320
55.000
0.00
0.00
0.00
3.16
2477
2812
0.037605
CTAACCGACGCCCTGAAACT
60.038
55.000
0.00
0.00
0.00
2.66
2478
2813
1.017701
CCTAACCGACGCCCTGAAAC
61.018
60.000
0.00
0.00
0.00
2.78
2479
2814
1.186917
TCCTAACCGACGCCCTGAAA
61.187
55.000
0.00
0.00
0.00
2.69
2480
2815
0.974010
ATCCTAACCGACGCCCTGAA
60.974
55.000
0.00
0.00
0.00
3.02
2481
2816
0.974010
AATCCTAACCGACGCCCTGA
60.974
55.000
0.00
0.00
0.00
3.86
2482
2817
0.810031
CAATCCTAACCGACGCCCTG
60.810
60.000
0.00
0.00
0.00
4.45
2483
2818
1.262640
ACAATCCTAACCGACGCCCT
61.263
55.000
0.00
0.00
0.00
5.19
2495
2849
1.206132
CCATGCATGCACAACAATCCT
59.794
47.619
25.37
0.00
0.00
3.24
2505
2859
0.251253
TCAACACCTCCATGCATGCA
60.251
50.000
25.04
25.04
0.00
3.96
2506
2860
0.454600
CTCAACACCTCCATGCATGC
59.545
55.000
21.69
11.82
0.00
4.06
2507
2861
2.118313
TCTCAACACCTCCATGCATG
57.882
50.000
20.19
20.19
0.00
4.06
2508
2862
2.422519
GGATCTCAACACCTCCATGCAT
60.423
50.000
0.00
0.00
0.00
3.96
2531
2885
2.042435
CTCCCCCTCCTCTCGCTT
60.042
66.667
0.00
0.00
0.00
4.68
2532
2886
4.150454
CCTCCCCCTCCTCTCGCT
62.150
72.222
0.00
0.00
0.00
4.93
2534
2888
4.548513
CCCCTCCCCCTCCTCTCG
62.549
77.778
0.00
0.00
0.00
4.04
2535
2889
3.036959
TCCCCTCCCCCTCCTCTC
61.037
72.222
0.00
0.00
0.00
3.20
2536
2890
3.039526
CTCCCCTCCCCCTCCTCT
61.040
72.222
0.00
0.00
0.00
3.69
2537
2891
4.179599
CCTCCCCTCCCCCTCCTC
62.180
77.778
0.00
0.00
0.00
3.71
2593
2953
2.005960
CTCCCTCCCACTTACTCGCG
62.006
65.000
0.00
0.00
0.00
5.87
2594
2954
0.683504
TCTCCCTCCCACTTACTCGC
60.684
60.000
0.00
0.00
0.00
5.03
2595
2955
1.751924
CTTCTCCCTCCCACTTACTCG
59.248
57.143
0.00
0.00
0.00
4.18
2615
2975
0.606673
AACTTTCAGCCTCCGCTTCC
60.607
55.000
0.00
0.00
45.55
3.46
2645
3009
2.015588
GCCCATGTGATGTGAGTGAGG
61.016
57.143
0.00
0.00
0.00
3.86
2713
3077
4.767892
AAGGCAGGGAGGGAGGGG
62.768
72.222
0.00
0.00
0.00
4.79
2714
3078
3.415087
CAAGGCAGGGAGGGAGGG
61.415
72.222
0.00
0.00
0.00
4.30
2715
3079
1.793820
AAACAAGGCAGGGAGGGAGG
61.794
60.000
0.00
0.00
0.00
4.30
2716
3080
0.113190
AAAACAAGGCAGGGAGGGAG
59.887
55.000
0.00
0.00
0.00
4.30
2717
3081
1.354368
CTAAAACAAGGCAGGGAGGGA
59.646
52.381
0.00
0.00
0.00
4.20
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.