AutoCloner

Multiple sequence alignment - TraesCS7A01G254600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G254600	chr7A	100.000	2525	0	0	1	2525	241166009	241168533	0.000000e+00	4663.0
1	TraesCS7A01G254600	chr7A	87.310	725	78	5	246	963	322527490	322528207	0.000000e+00	817.0
2	TraesCS7A01G254600	chr5D	89.308	982	96	4	244	1217	9198132	9197152	0.000000e+00	1223.0
3	TraesCS7A01G254600	chr5D	87.130	979	99	15	246	1217	9191454	9190496	0.000000e+00	1085.0
4	TraesCS7A01G254600	chr5D	92.776	526	36	2	1995	2519	218655025	218655549	0.000000e+00	760.0
5	TraesCS7A01G254600	chr6B	84.524	1260	141	28	8	1216	347528457	347527201	0.000000e+00	1197.0
6	TraesCS7A01G254600	chr4D	88.493	982	103	5	244	1217	70475834	70474855	0.000000e+00	1179.0
7	TraesCS7A01G254600	chr4D	88.098	983	105	7	244	1217	70496007	70495028	0.000000e+00	1157.0
8	TraesCS7A01G254600	chr4D	84.951	618	55	18	1	586	440019650	440020261	2.160000e-165	592.0
9	TraesCS7A01G254600	chr4D	82.504	623	68	19	1	588	34158028	34158644	2.240000e-140	508.0
10	TraesCS7A01G254600	chr4D	88.406	345	34	4	244	587	34191648	34191987	6.500000e-111	411.0
11	TraesCS7A01G254600	chr4D	91.379	58	3	2	1943	1998	434503006	434503063	7.490000e-11	78.7
12	TraesCS7A01G254600	chr5A	93.820	712	36	7	1287	1994	169723294	169722587	0.000000e+00	1064.0
13	TraesCS7A01G254600	chr5A	91.917	532	41	2	760	1291	169786628	169786099	0.000000e+00	743.0
14	TraesCS7A01G254600	chr5A	84.011	738	78	22	1	703	67753247	67753979	0.000000e+00	673.0
15	TraesCS7A01G254600	chr5A	90.000	230	22	1	7	236	169796138	169795910	1.900000e-76	296.0
16	TraesCS7A01G254600	chr5A	89.583	96	10	0	1899	1994	390493315	390493220	3.410000e-24	122.0
17	TraesCS7A01G254600	chr7D	87.248	941	104	11	244	1173	446762766	446763701	0.000000e+00	1059.0
18	TraesCS7A01G254600	chr7D	86.716	941	109	10	244	1173	446742601	446743536	0.000000e+00	1031.0
19	TraesCS7A01G254600	chr7D	92.844	531	34	4	1995	2525	236809335	236808809	0.000000e+00	767.0
20	TraesCS7A01G254600	chr7D	92.481	532	36	4	1995	2525	325938539	325939067	0.000000e+00	758.0
21	TraesCS7A01G254600	chr7D	87.003	654	72	5	574	1216	235335030	235334379	0.000000e+00	725.0
22	TraesCS7A01G254600	chr7D	84.404	654	89	5	574	1216	235343070	235342419	4.580000e-177	630.0
23	TraesCS7A01G254600	chr7D	91.525	59	3	1	1943	1999	156716537	156716479	2.080000e-11	80.5
24	TraesCS7A01G254600	chr2D	83.959	985	110	14	244	1216	217314300	217315248	0.000000e+00	900.0
25	TraesCS7A01G254600	chr2D	82.335	985	121	15	244	1216	217338380	217339323	0.000000e+00	806.0
26	TraesCS7A01G254600	chr2D	93.536	526	34	0	1995	2520	386466870	386467395	0.000000e+00	784.0
27	TraesCS7A01G254600	chr2D	92.495	533	39	1	1993	2524	97529551	97530083	0.000000e+00	761.0
28	TraesCS7A01G254600	chr2D	92.495	533	36	4	1995	2525	179243771	179243241	0.000000e+00	760.0
29	TraesCS7A01G254600	chr2D	88.571	245	25	3	1	243	357290227	357290470	6.830000e-76	294.0
30	TraesCS7A01G254600	chr4A	87.847	757	82	5	241	990	196697960	196698713	0.000000e+00	880.0
31	TraesCS7A01G254600	chr4A	91.613	310	25	1	1053	1362	196698715	196699023	6.450000e-116	427.0
32	TraesCS7A01G254600	chr4A	91.234	308	26	1	1053	1360	196629220	196629526	3.880000e-113	418.0
33	TraesCS7A01G254600	chr1D	93.220	531	35	1	1995	2524	80233700	80233170	0.000000e+00	780.0
34	TraesCS7A01G254600	chr1D	85.627	654	81	5	574	1216	36251430	36250779	0.000000e+00	675.0
35	TraesCS7A01G254600	chr1D	89.496	238	22	3	8	244	111627475	111627710	5.280000e-77	298.0
36	TraesCS7A01G254600	chr1D	91.667	60	3	1	1943	2000	936277	936218	5.790000e-12	82.4
37	TraesCS7A01G254600	chr6D	92.669	532	37	2	1995	2525	164084309	164083779	0.000000e+00	765.0
38	TraesCS7A01G254600	chr1A	92.481	532	38	2	1995	2525	290083764	290084294	0.000000e+00	760.0
39	TraesCS7A01G254600	chr1A	93.833	454	22	5	1546	1996	181315850	181315400	0.000000e+00	678.0
40	TraesCS7A01G254600	chr1A	90.969	454	33	6	1547	1994	181332054	181331603	2.780000e-169	604.0
41	TraesCS7A01G254600	chr3B	87.952	249	29	1	1	248	669157301	669157549	2.460000e-75	292.0
42	TraesCS7A01G254600	chr3B	82.596	339	30	11	245	583	669137156	669137465	3.200000e-69	272.0
43	TraesCS7A01G254600	chr3D	87.805	246	27	3	1	244	16123923	16124167	4.110000e-73	285.0
44	TraesCS7A01G254600	chr5B	81.579	342	34	11	245	586	403660441	403660129	3.220000e-64	255.0
45	TraesCS7A01G254600	chr6A	84.685	111	13	4	1893	2001	253042624	253042732	9.550000e-20	108.0
46	TraesCS7A01G254600	chr2B	88.406	69	6	2	1932	1998	695798485	695798417	5.790000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G254600	chr7A	241166009	241168533	2524	False	4663.0	4663	100.000	1	2525	1	chr7A.!!$F1	2524
1	TraesCS7A01G254600	chr7A	322527490	322528207	717	False	817.0	817	87.310	246	963	1	chr7A.!!$F2	717
2	TraesCS7A01G254600	chr5D	9197152	9198132	980	True	1223.0	1223	89.308	244	1217	1	chr5D.!!$R2	973
3	TraesCS7A01G254600	chr5D	9190496	9191454	958	True	1085.0	1085	87.130	246	1217	1	chr5D.!!$R1	971
4	TraesCS7A01G254600	chr5D	218655025	218655549	524	False	760.0	760	92.776	1995	2519	1	chr5D.!!$F1	524
5	TraesCS7A01G254600	chr6B	347527201	347528457	1256	True	1197.0	1197	84.524	8	1216	1	chr6B.!!$R1	1208
6	TraesCS7A01G254600	chr4D	70474855	70475834	979	True	1179.0	1179	88.493	244	1217	1	chr4D.!!$R1	973
7	TraesCS7A01G254600	chr4D	70495028	70496007	979	True	1157.0	1157	88.098	244	1217	1	chr4D.!!$R2	973
8	TraesCS7A01G254600	chr4D	440019650	440020261	611	False	592.0	592	84.951	1	586	1	chr4D.!!$F4	585
9	TraesCS7A01G254600	chr4D	34158028	34158644	616	False	508.0	508	82.504	1	588	1	chr4D.!!$F1	587
10	TraesCS7A01G254600	chr5A	169722587	169723294	707	True	1064.0	1064	93.820	1287	1994	1	chr5A.!!$R1	707
11	TraesCS7A01G254600	chr5A	169786099	169786628	529	True	743.0	743	91.917	760	1291	1	chr5A.!!$R2	531
12	TraesCS7A01G254600	chr5A	67753247	67753979	732	False	673.0	673	84.011	1	703	1	chr5A.!!$F1	702
13	TraesCS7A01G254600	chr7D	446762766	446763701	935	False	1059.0	1059	87.248	244	1173	1	chr7D.!!$F3	929
14	TraesCS7A01G254600	chr7D	446742601	446743536	935	False	1031.0	1031	86.716	244	1173	1	chr7D.!!$F2	929
15	TraesCS7A01G254600	chr7D	236808809	236809335	526	True	767.0	767	92.844	1995	2525	1	chr7D.!!$R4	530
16	TraesCS7A01G254600	chr7D	325938539	325939067	528	False	758.0	758	92.481	1995	2525	1	chr7D.!!$F1	530
17	TraesCS7A01G254600	chr7D	235334379	235335030	651	True	725.0	725	87.003	574	1216	1	chr7D.!!$R2	642
18	TraesCS7A01G254600	chr7D	235342419	235343070	651	True	630.0	630	84.404	574	1216	1	chr7D.!!$R3	642
19	TraesCS7A01G254600	chr2D	217314300	217315248	948	False	900.0	900	83.959	244	1216	1	chr2D.!!$F2	972
20	TraesCS7A01G254600	chr2D	217338380	217339323	943	False	806.0	806	82.335	244	1216	1	chr2D.!!$F3	972
21	TraesCS7A01G254600	chr2D	386466870	386467395	525	False	784.0	784	93.536	1995	2520	1	chr2D.!!$F5	525
22	TraesCS7A01G254600	chr2D	97529551	97530083	532	False	761.0	761	92.495	1993	2524	1	chr2D.!!$F1	531
23	TraesCS7A01G254600	chr2D	179243241	179243771	530	True	760.0	760	92.495	1995	2525	1	chr2D.!!$R1	530
24	TraesCS7A01G254600	chr4A	196697960	196699023	1063	False	653.5	880	89.730	241	1362	2	chr4A.!!$F2	1121
25	TraesCS7A01G254600	chr1D	80233170	80233700	530	True	780.0	780	93.220	1995	2524	1	chr1D.!!$R3	529
26	TraesCS7A01G254600	chr1D	36250779	36251430	651	True	675.0	675	85.627	574	1216	1	chr1D.!!$R2	642
27	TraesCS7A01G254600	chr6D	164083779	164084309	530	True	765.0	765	92.669	1995	2525	1	chr6D.!!$R1	530
28	TraesCS7A01G254600	chr1A	290083764	290084294	530	False	760.0	760	92.481	1995	2525	1	chr1A.!!$F1	530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
365	440	0.179029	AGTCAAACCGGTCAAGGTGG	60.179	55.0	8.04	0.0	45.21	4.61	F
1422	1511	0.173708	GAGCGAGTCTAACCCTGGTG	59.826	60.0	0.00	0.0	0.00	4.17	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1449	1538	2.415426	GCTAGCAGCCTCTCGTCC	59.585	66.667	10.63	0.0	34.48	4.79	R
2259	2352	4.168088	ACAAGGAAGAAAAAGAAGGAGGGA	59.832	41.667	0.00	0.0	0.00	4.20	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
71	73	2.356673	GTGGTGGACGAACGGGTC	60.357	66.667	0.00	0.00	36.18	4.46
87	89	1.798813	GGGTCATGTATTCGGATTCGC	59.201	52.381	0.00	0.00	36.13	4.70
99	101	0.379669	GGATTCGCCTCGTCGTTCTA	59.620	55.000	0.00	0.00	0.00	2.10
283	348	1.403679	CAAAGCGAACCAGGTCAACAA	59.596	47.619	0.00	0.00	0.00	2.83
360	435	3.823281	TTGACTAGTCAAACCGGTCAA	57.177	42.857	31.26	9.67	45.56	3.18
361	436	3.380479	TGACTAGTCAAACCGGTCAAG	57.620	47.619	23.24	0.06	36.53	3.02
362	437	2.036733	TGACTAGTCAAACCGGTCAAGG	59.963	50.000	23.24	0.00	36.53	3.61
363	438	4.509464	TGACTAGTCAAACCGGTCAAGGT	61.509	47.826	23.24	0.46	39.51	3.50
364	439	2.224209	ACTAGTCAAACCGGTCAAGGTG	60.224	50.000	8.04	1.38	45.21	4.00
365	440	0.179029	AGTCAAACCGGTCAAGGTGG	60.179	55.000	8.04	0.00	45.21	4.61
366	441	1.149627	TCAAACCGGTCAAGGTGGG	59.850	57.895	8.04	0.00	45.21	4.61
367	442	1.901464	CAAACCGGTCAAGGTGGGG	60.901	63.158	8.04	0.00	45.21	4.96
543	618	7.361799	GGCCATAAGGATTAGTTTAATTAGCCG	60.362	40.741	0.00	0.00	36.89	5.52
579	654	2.506231	TGATTAATTAGGTGCGGGTCCA	59.494	45.455	0.00	0.00	0.00	4.02
640	715	4.929707	CGGCTAATCCCACGGGGC	62.930	72.222	0.00	0.00	43.94	5.80
736	811	4.161295	CCTCGCTGGAATCGCCCA	62.161	66.667	0.00	0.00	38.35	5.36
1005	1092	2.124736	GCGGAAGTGGCTATGGCA	60.125	61.111	2.58	0.00	40.87	4.92
1028	1115	2.528134	GGATCCCGATGAGGTTGGA	58.472	57.895	0.00	0.00	38.74	3.53
1154	1241	2.976903	GCAGCCAGATCCATCCGC	60.977	66.667	0.00	0.00	0.00	5.54
1237	1325	2.758327	ATGTCGAGGTAGGGCGCA	60.758	61.111	10.83	0.00	0.00	6.09
1395	1484	4.554036	GGCGTGAGGGAGATGGGC	62.554	72.222	0.00	0.00	0.00	5.36
1414	1503	1.065701	GCAAGGATCGAGCGAGTCTAA	59.934	52.381	0.00	0.00	0.00	2.10
1419	1508	1.002251	GATCGAGCGAGTCTAACCCTG	60.002	57.143	0.00	0.00	0.00	4.45
1421	1510	1.313812	CGAGCGAGTCTAACCCTGGT	61.314	60.000	0.00	0.00	0.00	4.00
1422	1511	0.173708	GAGCGAGTCTAACCCTGGTG	59.826	60.000	0.00	0.00	0.00	4.17
1428	1517	4.388499	CTAACCCTGGTGGCGCGT	62.388	66.667	8.43	0.00	37.83	6.01
1696	1788	3.380471	ACATTATTTAGGGCTGCCACA	57.620	42.857	22.05	3.93	0.00	4.17
1697	1789	3.707316	ACATTATTTAGGGCTGCCACAA	58.293	40.909	22.05	10.54	0.00	3.33
1730	1822	7.680442	TGACGACTAATTGGATTCATTTGAA	57.320	32.000	0.00	0.00	38.56	2.69
1769	1861	6.157123	AGGAAAGGTTTATTTTGGGTTGTTCA	59.843	34.615	0.00	0.00	0.00	3.18
1794	1887	6.209986	ACCCAGTTTAAATAGTTTAAGGGCAC	59.790	38.462	13.61	0.00	39.73	5.01
1963	2056	3.402353	TGACATGGAATCATTAGGGGGA	58.598	45.455	0.00	0.00	0.00	4.81
1967	2060	5.892348	ACATGGAATCATTAGGGGGATTAC	58.108	41.667	0.00	0.00	35.37	1.89
1969	2062	5.843019	TGGAATCATTAGGGGGATTACTC	57.157	43.478	0.00	0.00	35.73	2.59
1988	2081	3.056749	ACTCTAGCTTAATTATCCGGGCG	60.057	47.826	0.00	0.00	0.00	6.13
2132	2225	0.976073	TTACAGCGGGGAGAAGAGGG	60.976	60.000	0.00	0.00	0.00	4.30
2148	2241	1.812571	GAGGGTTTACACCACTGCATG	59.187	52.381	0.00	0.00	46.43	4.06
2168	2261	2.983192	TGGAGGGTGATAAAGTTGGTGA	59.017	45.455	0.00	0.00	0.00	4.02
2259	2352	4.851214	GCGAGGGGGAGAGAGCCT	62.851	72.222	0.00	0.00	0.00	4.58
2282	2376	4.168088	TCCCTCCTTCTTTTTCTTCCTTGT	59.832	41.667	0.00	0.00	0.00	3.16
2283	2377	5.371472	TCCCTCCTTCTTTTTCTTCCTTGTA	59.629	40.000	0.00	0.00	0.00	2.41
2423	2521	3.056607	CAGATCTGGCCGAAAACCATTTT	60.057	43.478	15.38	0.00	36.36	1.82
2461	2559	1.571919	GTAACTCCGATTGCGCTGAT	58.428	50.000	9.73	2.13	35.83	2.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
3	4	0.393537	CACCTCCAGTTCATCTGCCC	60.394	60.000	0.00	0.00	42.38	5.36
15	17	0.888736	CGTGCAACAATCCACCTCCA	60.889	55.000	0.00	0.00	35.74	3.86
71	73	1.721389	CGAGGCGAATCCGAATACATG	59.279	52.381	0.00	0.00	40.77	3.21
87	89	2.349297	AGTTGCTTAGAACGACGAGG	57.651	50.000	0.00	0.00	0.00	4.63
99	101	9.816354	AAAATACTTTGTACATGAAAGTTGCTT	57.184	25.926	14.83	6.17	40.04	3.91
259	324	1.689813	TGACCTGGTTCGCTTTGACTA	59.310	47.619	0.00	0.00	0.00	2.59
270	335	3.381272	CACTGTTCATTGTTGACCTGGTT	59.619	43.478	0.00	0.00	0.00	3.67
283	348	0.991920	CCCCCACCTACACTGTTCAT	59.008	55.000	0.00	0.00	0.00	2.57
352	427	4.912299	ACCCCCACCTTGACCGGT	62.912	66.667	6.92	6.92	37.93	5.28
353	428	4.029809	GACCCCCACCTTGACCGG	62.030	72.222	0.00	0.00	0.00	5.28
354	429	1.268992	TATGACCCCCACCTTGACCG	61.269	60.000	0.00	0.00	0.00	4.79
357	432	2.587060	ATCTATGACCCCCACCTTGA	57.413	50.000	0.00	0.00	0.00	3.02
358	433	3.071602	CACTATCTATGACCCCCACCTTG	59.928	52.174	0.00	0.00	0.00	3.61
359	434	3.318313	CACTATCTATGACCCCCACCTT	58.682	50.000	0.00	0.00	0.00	3.50
360	435	2.427889	CCACTATCTATGACCCCCACCT	60.428	54.545	0.00	0.00	0.00	4.00
361	436	1.978580	CCACTATCTATGACCCCCACC	59.021	57.143	0.00	0.00	0.00	4.61
362	437	1.348036	GCCACTATCTATGACCCCCAC	59.652	57.143	0.00	0.00	0.00	4.61
363	438	1.061735	TGCCACTATCTATGACCCCCA	60.062	52.381	0.00	0.00	0.00	4.96
364	439	1.729586	TGCCACTATCTATGACCCCC	58.270	55.000	0.00	0.00	0.00	5.40
365	440	5.700402	ATATTGCCACTATCTATGACCCC	57.300	43.478	0.00	0.00	0.00	4.95
366	441	8.100791	TGTTAATATTGCCACTATCTATGACCC	58.899	37.037	0.00	0.00	0.00	4.46
367	442	9.502091	TTGTTAATATTGCCACTATCTATGACC	57.498	33.333	0.00	0.00	0.00	4.02
477	552	8.511321	CATGCAACTGTAGTGATTAGGTTTAAA	58.489	33.333	0.00	0.00	0.00	1.52
490	565	1.611673	GGTGAGCCATGCAACTGTAGT	60.612	52.381	0.00	0.00	34.09	2.73
523	598	5.691896	AGCCGGCTAATTAAACTAATCCTT	58.308	37.500	31.86	0.00	0.00	3.36
579	654	5.136828	TCACCCATGTGTAAATGACAAACT	58.863	37.500	0.00	0.00	43.26	2.66
999	1086	2.110213	GGGATCCGCGTTGCCATA	59.890	61.111	4.92	0.00	0.00	2.74
1028	1115	4.749310	CTCGTTGCTGCCGCCTCT	62.749	66.667	0.00	0.00	34.43	3.69
1154	1241	2.513897	GCCGTCCCTTCCCATTCG	60.514	66.667	0.00	0.00	0.00	3.34
1237	1325	4.749310	CTGCTTCACCTCGCCGCT	62.749	66.667	0.00	0.00	0.00	5.52
1241	1330	3.797546	GCTGCTGCTTCACCTCGC	61.798	66.667	8.53	0.00	36.03	5.03
1368	1457	3.190849	CTCACGCCGCACCTCATG	61.191	66.667	0.00	0.00	0.00	3.07
1378	1467	4.554036	GCCCATCTCCCTCACGCC	62.554	72.222	0.00	0.00	0.00	5.68
1395	1484	2.541999	GGTTAGACTCGCTCGATCCTTG	60.542	54.545	0.00	0.00	0.00	3.61
1428	1517	3.572715	ATCCCCTCGTTCCCCACCA	62.573	63.158	0.00	0.00	0.00	4.17
1449	1538	2.415426	GCTAGCAGCCTCTCGTCC	59.585	66.667	10.63	0.00	34.48	4.79
1769	1861	6.209986	GTGCCCTTAAACTATTTAAACTGGGT	59.790	38.462	13.95	0.00	38.97	4.51
1849	1942	5.413309	AACAAAAACATTCACTGGGTTGA	57.587	34.783	0.00	0.00	0.00	3.18
1912	2005	3.942130	ACTTAGCCAAATTGCCACTTC	57.058	42.857	0.00	0.00	0.00	3.01
1963	2056	6.627508	CGCCCGGATAATTAAGCTAGAGTAAT	60.628	42.308	0.73	0.00	0.00	1.89
1967	2060	3.056749	ACGCCCGGATAATTAAGCTAGAG	60.057	47.826	0.73	0.00	0.00	2.43
1969	2062	3.251571	GACGCCCGGATAATTAAGCTAG	58.748	50.000	0.73	0.00	0.00	3.42
1988	2081	4.323417	TGATCTTGGTTGGTATGTGTGAC	58.677	43.478	0.00	0.00	0.00	3.67
2073	2166	8.995027	TGGTGCTCAACTCCATATATTATTTT	57.005	30.769	0.00	0.00	37.01	1.82
2148	2241	3.713826	TCACCAACTTTATCACCCTCC	57.286	47.619	0.00	0.00	0.00	4.30
2154	2247	4.280436	ACCGTCATCACCAACTTTATCA	57.720	40.909	0.00	0.00	0.00	2.15
2157	2250	3.007074	TGCTACCGTCATCACCAACTTTA	59.993	43.478	0.00	0.00	0.00	1.85
2168	2261	3.937814	TCAACAATCTTGCTACCGTCAT	58.062	40.909	0.00	0.00	0.00	3.06
2229	2322	4.421479	CTCGCTTCCGGTGTCGCT	62.421	66.667	0.00	0.00	34.56	4.93
2259	2352	4.168088	ACAAGGAAGAAAAAGAAGGAGGGA	59.832	41.667	0.00	0.00	0.00	4.20

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.