Multiple sequence alignment - TraesCS7A01G253800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G253800 chr7A 100.000 3513 0 0 1 3513 239754948 239758460 0.000000e+00 6488
1 TraesCS7A01G253800 chr7D 94.389 1497 61 9 399 1893 227565390 227566865 0.000000e+00 2278
2 TraesCS7A01G253800 chr7D 88.469 1639 114 38 1915 3513 227566860 227568463 0.000000e+00 1910
3 TraesCS7A01G253800 chr7D 90.535 243 16 3 1 239 227565166 227565405 7.320000e-82 315
4 TraesCS7A01G253800 chr7B 94.232 1491 52 22 414 1893 199281794 199283261 0.000000e+00 2246
5 TraesCS7A01G253800 chr7B 93.554 1086 49 11 2018 3098 199283304 199284373 0.000000e+00 1598
6 TraesCS7A01G253800 chr7B 93.144 423 20 2 3100 3513 199284537 199284959 2.320000e-171 612
7 TraesCS7A01G253800 chr7B 86.770 257 16 7 1 239 199281539 199281795 1.610000e-68 270
8 TraesCS7A01G253800 chr5D 79.339 484 58 29 1061 1532 384471270 384471723 5.700000e-78 302
9 TraesCS7A01G253800 chr5B 79.412 442 58 20 1097 1532 461292421 461292835 7.420000e-72 281
10 TraesCS7A01G253800 chr5A 79.587 436 56 20 1097 1526 485375614 485376022 7.420000e-72 281


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G253800 chr7A 239754948 239758460 3512 False 6488.0 6488 100.000 1 3513 1 chr7A.!!$F1 3512
1 TraesCS7A01G253800 chr7D 227565166 227568463 3297 False 1501.0 2278 91.131 1 3513 3 chr7D.!!$F1 3512
2 TraesCS7A01G253800 chr7B 199281539 199284959 3420 False 1181.5 2246 91.925 1 3513 4 chr7B.!!$F1 3512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 283 1.203149 AGGGACCAACCGTCTAGTTCT 60.203 52.381 0.00 0.0 41.64 3.01 F
2031 2066 0.042188 CTCACACGTGCCAAAGTTCG 60.042 55.000 17.22 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2168 0.035630 GTTGTCAGCAGGAGGAGCAT 60.036 55.0 0.00 0.0 0.0 3.79 R
2871 2921 0.798776 CGGCAGTGCTAAAGTTCCTG 59.201 55.0 16.11 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.805345 CTGATAAGCTGCAGCATAGGC 59.195 52.381 38.24 25.36 45.16 3.93
51 52 6.940298 AGGCTGTTTGAAGCATAAAGTAGTTA 59.060 34.615 0.00 0.00 45.43 2.24
76 77 5.104374 GCATGGATGGTTATTCTTGTTGTG 58.896 41.667 0.00 0.00 0.00 3.33
78 79 6.406177 GCATGGATGGTTATTCTTGTTGTGAT 60.406 38.462 0.00 0.00 0.00 3.06
120 121 5.529060 GCTTTATCTGAACTGATGGGTAAGG 59.471 44.000 4.82 0.00 0.00 2.69
121 122 6.636454 TTTATCTGAACTGATGGGTAAGGT 57.364 37.500 4.82 0.00 0.00 3.50
146 147 4.409570 CATTTTTGTTCTCTGGATCTGCG 58.590 43.478 0.00 0.00 0.00 5.18
176 177 4.884164 GCACCTGGCATCTCTTTAAATACT 59.116 41.667 0.00 0.00 43.97 2.12
177 178 6.055588 GCACCTGGCATCTCTTTAAATACTA 58.944 40.000 0.00 0.00 43.97 1.82
178 179 6.017852 GCACCTGGCATCTCTTTAAATACTAC 60.018 42.308 0.00 0.00 43.97 2.73
179 180 6.483640 CACCTGGCATCTCTTTAAATACTACC 59.516 42.308 0.00 0.00 0.00 3.18
180 181 6.387220 ACCTGGCATCTCTTTAAATACTACCT 59.613 38.462 0.00 0.00 0.00 3.08
182 183 8.429641 CCTGGCATCTCTTTAAATACTACCTAA 58.570 37.037 0.00 0.00 0.00 2.69
183 184 9.482627 CTGGCATCTCTTTAAATACTACCTAAG 57.517 37.037 0.00 0.00 0.00 2.18
184 185 9.209048 TGGCATCTCTTTAAATACTACCTAAGA 57.791 33.333 0.00 0.00 0.00 2.10
239 258 4.773674 TGGATGTGAGAAATTGATGCCTTT 59.226 37.500 0.00 0.00 0.00 3.11
240 259 5.246656 TGGATGTGAGAAATTGATGCCTTTT 59.753 36.000 0.00 0.00 0.00 2.27
241 260 6.168389 GGATGTGAGAAATTGATGCCTTTTT 58.832 36.000 0.00 0.00 0.00 1.94
260 279 3.967332 TTTTAGGGACCAACCGTCTAG 57.033 47.619 0.00 0.00 41.64 2.43
261 280 2.610438 TTAGGGACCAACCGTCTAGT 57.390 50.000 0.00 0.00 41.64 2.57
262 281 2.610438 TAGGGACCAACCGTCTAGTT 57.390 50.000 0.00 0.00 41.64 2.24
263 282 1.264295 AGGGACCAACCGTCTAGTTC 58.736 55.000 0.00 0.00 41.64 3.01
264 283 1.203149 AGGGACCAACCGTCTAGTTCT 60.203 52.381 0.00 0.00 41.64 3.01
265 284 2.042162 AGGGACCAACCGTCTAGTTCTA 59.958 50.000 0.00 0.00 41.64 2.10
266 285 2.165234 GGGACCAACCGTCTAGTTCTAC 59.835 54.545 0.00 0.00 41.64 2.59
267 286 2.159462 GGACCAACCGTCTAGTTCTACG 60.159 54.545 0.00 0.00 41.64 3.51
280 299 9.727627 CGTCTAGTTCTACGGTAATTTTCTATT 57.272 33.333 0.00 0.00 35.51 1.73
357 376 4.718940 GCAGAAGCCTCTATCCTCTATC 57.281 50.000 0.00 0.00 33.58 2.08
358 377 4.344104 GCAGAAGCCTCTATCCTCTATCT 58.656 47.826 0.00 0.00 33.58 1.98
359 378 4.772100 GCAGAAGCCTCTATCCTCTATCTT 59.228 45.833 0.00 0.00 33.58 2.40
360 379 5.105756 GCAGAAGCCTCTATCCTCTATCTTC 60.106 48.000 0.00 0.00 33.58 2.87
361 380 6.248433 CAGAAGCCTCTATCCTCTATCTTCT 58.752 44.000 0.00 0.00 39.42 2.85
362 381 7.402054 CAGAAGCCTCTATCCTCTATCTTCTA 58.598 42.308 0.00 0.00 37.50 2.10
363 382 8.055181 CAGAAGCCTCTATCCTCTATCTTCTAT 58.945 40.741 0.00 0.00 37.50 1.98
364 383 8.275040 AGAAGCCTCTATCCTCTATCTTCTATC 58.725 40.741 0.00 0.00 37.74 2.08
365 384 6.911308 AGCCTCTATCCTCTATCTTCTATCC 58.089 44.000 0.00 0.00 0.00 2.59
366 385 6.450024 AGCCTCTATCCTCTATCTTCTATCCA 59.550 42.308 0.00 0.00 0.00 3.41
367 386 7.036205 AGCCTCTATCCTCTATCTTCTATCCAA 60.036 40.741 0.00 0.00 0.00 3.53
368 387 7.784550 GCCTCTATCCTCTATCTTCTATCCAAT 59.215 40.741 0.00 0.00 0.00 3.16
369 388 9.135189 CCTCTATCCTCTATCTTCTATCCAATG 57.865 40.741 0.00 0.00 0.00 2.82
370 389 8.532186 TCTATCCTCTATCTTCTATCCAATGC 57.468 38.462 0.00 0.00 0.00 3.56
371 390 6.558488 ATCCTCTATCTTCTATCCAATGCC 57.442 41.667 0.00 0.00 0.00 4.40
372 391 5.406163 TCCTCTATCTTCTATCCAATGCCA 58.594 41.667 0.00 0.00 0.00 4.92
373 392 5.483231 TCCTCTATCTTCTATCCAATGCCAG 59.517 44.000 0.00 0.00 0.00 4.85
374 393 5.248020 CCTCTATCTTCTATCCAATGCCAGT 59.752 44.000 0.00 0.00 0.00 4.00
375 394 6.239829 CCTCTATCTTCTATCCAATGCCAGTT 60.240 42.308 0.00 0.00 0.00 3.16
376 395 7.141758 TCTATCTTCTATCCAATGCCAGTTT 57.858 36.000 0.00 0.00 0.00 2.66
377 396 7.577303 TCTATCTTCTATCCAATGCCAGTTTT 58.423 34.615 0.00 0.00 0.00 2.43
378 397 8.055181 TCTATCTTCTATCCAATGCCAGTTTTT 58.945 33.333 0.00 0.00 0.00 1.94
421 440 7.246171 AGAGAAGGTTATGTCTTTCTTGCTA 57.754 36.000 0.00 0.00 34.68 3.49
431 450 9.944376 TTATGTCTTTCTTGCTATCTTGTACTT 57.056 29.630 0.00 0.00 0.00 2.24
433 452 6.874134 TGTCTTTCTTGCTATCTTGTACTTCC 59.126 38.462 0.00 0.00 0.00 3.46
494 514 4.458295 CCTGAAAGCAATGTCAGAGAACAT 59.542 41.667 2.28 0.00 43.32 2.71
495 515 5.645067 CCTGAAAGCAATGTCAGAGAACATA 59.355 40.000 2.28 0.00 43.32 2.29
496 516 6.402983 CCTGAAAGCAATGTCAGAGAACATAC 60.403 42.308 2.28 0.00 43.32 2.39
498 518 6.369890 TGAAAGCAATGTCAGAGAACATACTC 59.630 38.462 0.00 0.00 38.92 2.59
499 519 5.674052 AGCAATGTCAGAGAACATACTCT 57.326 39.130 0.00 0.00 46.51 3.24
501 521 7.175347 AGCAATGTCAGAGAACATACTCTAA 57.825 36.000 0.00 0.00 44.18 2.10
502 522 7.790027 AGCAATGTCAGAGAACATACTCTAAT 58.210 34.615 0.00 0.00 44.18 1.73
503 523 8.918116 AGCAATGTCAGAGAACATACTCTAATA 58.082 33.333 0.00 0.00 44.18 0.98
504 524 9.190858 GCAATGTCAGAGAACATACTCTAATAG 57.809 37.037 0.00 0.00 44.18 1.73
514 534 5.918608 ACATACTCTAATAGGTTGTGCCAG 58.081 41.667 0.00 0.00 40.61 4.85
567 587 7.004555 AGAATGGTCCCCTTCAAAAATTTAC 57.995 36.000 4.49 0.00 0.00 2.01
729 749 5.414454 TGGAAAATGAGGATTGGTTTAGACG 59.586 40.000 0.00 0.00 0.00 4.18
732 752 3.604875 TGAGGATTGGTTTAGACGGAC 57.395 47.619 0.00 0.00 0.00 4.79
769 789 5.289917 TGTGTGAAATTAAGGCATACACG 57.710 39.130 0.00 0.00 39.66 4.49
915 936 3.319122 ACCAAGCAACTCACTCCATTTTC 59.681 43.478 0.00 0.00 0.00 2.29
928 949 1.962807 CCATTTTCTGAACCCTGCACA 59.037 47.619 0.00 0.00 0.00 4.57
1019 1040 3.248043 TGGAGGCACCAAGAAATCG 57.752 52.632 0.00 0.00 46.75 3.34
1053 1074 2.301346 CTGCTCCTTGTTCTGTTGGTT 58.699 47.619 0.00 0.00 0.00 3.67
1281 1302 4.717629 TTCAGCACGGACGGCTCG 62.718 66.667 5.03 0.00 40.23 5.03
1540 1561 2.165641 CTCAACCTCTGTACGTGGCATA 59.834 50.000 0.00 0.00 0.00 3.14
1541 1562 2.764010 TCAACCTCTGTACGTGGCATAT 59.236 45.455 0.00 0.00 0.00 1.78
1542 1563 3.955551 TCAACCTCTGTACGTGGCATATA 59.044 43.478 0.00 0.00 0.00 0.86
1543 1564 4.049186 CAACCTCTGTACGTGGCATATAC 58.951 47.826 0.00 0.00 0.00 1.47
1544 1565 3.563223 ACCTCTGTACGTGGCATATACT 58.437 45.455 0.00 0.00 0.00 2.12
1555 1576 5.869344 ACGTGGCATATACTGTAGCATAATG 59.131 40.000 0.00 0.00 0.00 1.90
1556 1577 5.291858 CGTGGCATATACTGTAGCATAATGG 59.708 44.000 0.00 0.00 0.00 3.16
1557 1578 6.406370 GTGGCATATACTGTAGCATAATGGA 58.594 40.000 0.00 0.00 0.00 3.41
1558 1579 6.536582 GTGGCATATACTGTAGCATAATGGAG 59.463 42.308 0.00 0.00 0.00 3.86
1579 1611 4.841422 AGTATGAAACAGCTCTGCAGAAT 58.159 39.130 18.85 8.14 0.00 2.40
1861 1893 1.585521 CGTCGACTACACCATCGCC 60.586 63.158 14.70 0.00 38.24 5.54
1879 1911 1.994507 CTTCTGCCTCCCTCCAGCT 60.995 63.158 0.00 0.00 0.00 4.24
1893 1925 3.371917 CCTCCAGCTGGGTAATCAATCAA 60.372 47.826 32.23 7.56 38.11 2.57
1895 1927 2.360165 CCAGCTGGGTAATCAATCAAGC 59.640 50.000 26.14 0.00 0.00 4.01
1896 1928 3.285484 CAGCTGGGTAATCAATCAAGCT 58.715 45.455 5.57 0.00 0.00 3.74
1897 1929 3.314635 CAGCTGGGTAATCAATCAAGCTC 59.685 47.826 5.57 0.00 0.00 4.09
1898 1930 3.201708 AGCTGGGTAATCAATCAAGCTCT 59.798 43.478 0.00 0.00 0.00 4.09
1899 1931 3.950395 GCTGGGTAATCAATCAAGCTCTT 59.050 43.478 0.00 0.00 0.00 2.85
1900 1932 4.400567 GCTGGGTAATCAATCAAGCTCTTT 59.599 41.667 0.00 0.00 0.00 2.52
1901 1933 5.105595 GCTGGGTAATCAATCAAGCTCTTTT 60.106 40.000 0.00 0.00 0.00 2.27
1902 1934 6.573094 GCTGGGTAATCAATCAAGCTCTTTTT 60.573 38.462 0.00 0.00 0.00 1.94
1903 1935 6.924111 TGGGTAATCAATCAAGCTCTTTTTC 58.076 36.000 0.00 0.00 0.00 2.29
1904 1936 6.493115 TGGGTAATCAATCAAGCTCTTTTTCA 59.507 34.615 0.00 0.00 0.00 2.69
1905 1937 7.031975 GGGTAATCAATCAAGCTCTTTTTCAG 58.968 38.462 0.00 0.00 0.00 3.02
1906 1938 7.309438 GGGTAATCAATCAAGCTCTTTTTCAGT 60.309 37.037 0.00 0.00 0.00 3.41
1907 1939 8.084684 GGTAATCAATCAAGCTCTTTTTCAGTT 58.915 33.333 0.00 0.00 0.00 3.16
1908 1940 9.122613 GTAATCAATCAAGCTCTTTTTCAGTTC 57.877 33.333 0.00 0.00 0.00 3.01
1909 1941 6.949352 TCAATCAAGCTCTTTTTCAGTTCT 57.051 33.333 0.00 0.00 0.00 3.01
1910 1942 7.338800 TCAATCAAGCTCTTTTTCAGTTCTT 57.661 32.000 0.00 0.00 0.00 2.52
1911 1943 7.775120 TCAATCAAGCTCTTTTTCAGTTCTTT 58.225 30.769 0.00 0.00 0.00 2.52
1912 1944 8.253113 TCAATCAAGCTCTTTTTCAGTTCTTTT 58.747 29.630 0.00 0.00 0.00 2.27
1913 1945 8.876790 CAATCAAGCTCTTTTTCAGTTCTTTTT 58.123 29.630 0.00 0.00 0.00 1.94
1914 1946 8.640091 ATCAAGCTCTTTTTCAGTTCTTTTTC 57.360 30.769 0.00 0.00 0.00 2.29
1915 1947 7.601856 TCAAGCTCTTTTTCAGTTCTTTTTCA 58.398 30.769 0.00 0.00 0.00 2.69
1916 1948 8.253113 TCAAGCTCTTTTTCAGTTCTTTTTCAT 58.747 29.630 0.00 0.00 0.00 2.57
1917 1949 8.876790 CAAGCTCTTTTTCAGTTCTTTTTCATT 58.123 29.630 0.00 0.00 0.00 2.57
1918 1950 8.640091 AGCTCTTTTTCAGTTCTTTTTCATTC 57.360 30.769 0.00 0.00 0.00 2.67
1919 1951 8.253113 AGCTCTTTTTCAGTTCTTTTTCATTCA 58.747 29.630 0.00 0.00 0.00 2.57
1920 1952 8.323854 GCTCTTTTTCAGTTCTTTTTCATTCAC 58.676 33.333 0.00 0.00 0.00 3.18
1921 1953 9.578439 CTCTTTTTCAGTTCTTTTTCATTCACT 57.422 29.630 0.00 0.00 0.00 3.41
1922 1954 9.927668 TCTTTTTCAGTTCTTTTTCATTCACTT 57.072 25.926 0.00 0.00 0.00 3.16
1924 1956 9.703892 TTTTTCAGTTCTTTTTCATTCACTTCA 57.296 25.926 0.00 0.00 0.00 3.02
1960 1995 5.170748 GCAATTTGCAGCCAGTAATTAACT 58.829 37.500 16.35 0.00 44.26 2.24
1982 2017 1.820519 TGATGGCTGAAATGTGCTTCC 59.179 47.619 0.00 0.00 0.00 3.46
1987 2022 2.094545 GGCTGAAATGTGCTTCCGAATT 60.095 45.455 0.00 0.00 0.00 2.17
1988 2023 3.578688 GCTGAAATGTGCTTCCGAATTT 58.421 40.909 0.00 0.00 0.00 1.82
1989 2024 3.609807 GCTGAAATGTGCTTCCGAATTTC 59.390 43.478 0.00 0.00 38.78 2.17
1990 2025 4.616835 GCTGAAATGTGCTTCCGAATTTCT 60.617 41.667 8.07 0.00 38.97 2.52
1991 2026 4.797471 TGAAATGTGCTTCCGAATTTCTG 58.203 39.130 8.07 0.00 38.97 3.02
1992 2027 4.518590 TGAAATGTGCTTCCGAATTTCTGA 59.481 37.500 8.07 0.00 38.97 3.27
1993 2028 4.425577 AATGTGCTTCCGAATTTCTGAC 57.574 40.909 0.00 0.00 0.00 3.51
1994 2029 1.798223 TGTGCTTCCGAATTTCTGACG 59.202 47.619 0.00 0.00 0.00 4.35
1995 2030 2.066262 GTGCTTCCGAATTTCTGACGA 58.934 47.619 0.00 0.00 0.00 4.20
1996 2031 2.478894 GTGCTTCCGAATTTCTGACGAA 59.521 45.455 0.00 0.00 0.00 3.85
1997 2032 2.478894 TGCTTCCGAATTTCTGACGAAC 59.521 45.455 0.00 0.00 0.00 3.95
1998 2033 2.159693 GCTTCCGAATTTCTGACGAACC 60.160 50.000 0.00 0.00 0.00 3.62
1999 2034 2.823924 TCCGAATTTCTGACGAACCA 57.176 45.000 0.00 0.00 0.00 3.67
2000 2035 3.114668 TCCGAATTTCTGACGAACCAA 57.885 42.857 0.00 0.00 0.00 3.67
2006 2041 5.424121 AATTTCTGACGAACCAAGAACTG 57.576 39.130 0.00 0.00 0.00 3.16
2007 2042 3.812156 TTCTGACGAACCAAGAACTGA 57.188 42.857 0.00 0.00 0.00 3.41
2011 2046 4.340097 TCTGACGAACCAAGAACTGAGTAA 59.660 41.667 0.00 0.00 0.00 2.24
2012 2047 4.365723 TGACGAACCAAGAACTGAGTAAC 58.634 43.478 0.00 0.00 0.00 2.50
2015 2050 4.098960 ACGAACCAAGAACTGAGTAACTCA 59.901 41.667 0.00 0.00 38.25 3.41
2016 2051 4.444720 CGAACCAAGAACTGAGTAACTCAC 59.555 45.833 0.00 0.00 35.39 3.51
2027 2062 2.210116 AGTAACTCACACGTGCCAAAG 58.790 47.619 17.22 10.29 0.00 2.77
2031 2066 0.042188 CTCACACGTGCCAAAGTTCG 60.042 55.000 17.22 0.00 0.00 3.95
2054 2090 6.476706 TCGACAGATATGTACAGCTGAAATTG 59.523 38.462 23.35 9.56 32.86 2.32
2072 2108 7.264221 TGAAATTGTGTGCTTTGAAATACTGT 58.736 30.769 0.00 0.00 0.00 3.55
2073 2109 8.409371 TGAAATTGTGTGCTTTGAAATACTGTA 58.591 29.630 0.00 0.00 0.00 2.74
2125 2163 1.317431 TGAACATGCCTGCTGATGCC 61.317 55.000 0.00 0.00 38.71 4.40
2130 2168 0.901114 ATGCCTGCTGATGCCAACAA 60.901 50.000 0.00 0.00 38.71 2.83
2157 2195 0.038892 CCTGCTGACAACAATGGTGC 60.039 55.000 0.00 0.00 0.00 5.01
2158 2196 0.038892 CTGCTGACAACAATGGTGCC 60.039 55.000 0.00 0.00 0.00 5.01
2235 2273 0.609131 CCAACCCCTGCAGGTAACAG 60.609 60.000 30.63 15.07 40.05 3.16
2239 2277 1.675641 CCCTGCAGGTAACAGTGGC 60.676 63.158 30.63 0.00 41.41 5.01
2241 2279 1.301716 CTGCAGGTAACAGTGGCGT 60.302 57.895 5.57 0.00 41.41 5.68
2271 2309 0.472925 TACCAGCCACCTCCAACAGA 60.473 55.000 0.00 0.00 0.00 3.41
2284 2322 1.066908 CCAACAGACAACAATGGCGTT 59.933 47.619 0.00 0.00 40.62 4.84
2316 2354 1.837051 AGACACCTCCGACTGGCAA 60.837 57.895 0.00 0.00 34.14 4.52
2394 2432 3.801997 CTTCCAGCCGCCCCTGAT 61.802 66.667 0.11 0.00 34.77 2.90
2483 2521 0.249868 CGGTCAGCTGTGGTTTCTGA 60.250 55.000 14.67 0.00 34.78 3.27
2587 2625 3.838244 TCGAATACTTGAGGGATTGGG 57.162 47.619 0.00 0.00 0.00 4.12
2633 2671 2.619177 GAGGCTCGAAGCAGAGTACATA 59.381 50.000 0.00 0.00 44.75 2.29
2634 2672 3.226777 AGGCTCGAAGCAGAGTACATAT 58.773 45.455 8.71 0.00 44.75 1.78
2642 2680 4.333913 AGCAGAGTACATATCCAAGCAG 57.666 45.455 0.00 0.00 0.00 4.24
2682 2720 3.317150 TGACAGATTCACAGTAGTTGCG 58.683 45.455 0.00 0.00 0.00 4.85
2685 2723 3.005897 ACAGATTCACAGTAGTTGCGACT 59.994 43.478 12.27 12.27 39.97 4.18
2686 2724 3.990469 CAGATTCACAGTAGTTGCGACTT 59.010 43.478 12.97 0.00 37.33 3.01
2687 2725 3.990469 AGATTCACAGTAGTTGCGACTTG 59.010 43.478 12.97 8.11 37.33 3.16
2688 2726 3.446310 TTCACAGTAGTTGCGACTTGA 57.554 42.857 12.97 7.02 37.33 3.02
2689 2727 3.446310 TCACAGTAGTTGCGACTTGAA 57.554 42.857 12.97 0.00 37.33 2.69
2690 2728 3.787785 TCACAGTAGTTGCGACTTGAAA 58.212 40.909 12.97 0.00 37.33 2.69
2691 2729 3.554324 TCACAGTAGTTGCGACTTGAAAC 59.446 43.478 12.97 4.15 37.33 2.78
2692 2730 2.870411 ACAGTAGTTGCGACTTGAAACC 59.130 45.455 12.97 0.00 36.71 3.27
2693 2731 2.223377 CAGTAGTTGCGACTTGAAACCC 59.777 50.000 12.97 0.00 36.71 4.11
2694 2732 2.104281 AGTAGTTGCGACTTGAAACCCT 59.896 45.455 12.97 0.00 36.71 4.34
2744 2782 5.570320 AGATAGTACTGGTGGTGCAAATTT 58.430 37.500 5.39 0.00 32.88 1.82
2871 2921 7.426743 GCTCTGTTTTTACGATTCATAGCTTTC 59.573 37.037 0.00 0.00 0.00 2.62
2888 2940 3.610349 GCTTTCAGGAACTTTAGCACTGC 60.610 47.826 0.00 0.00 34.60 4.40
2912 2964 5.297029 CCGGGTGATAAATCTTCTCCTTTTC 59.703 44.000 0.00 0.00 0.00 2.29
2913 2965 6.116126 CGGGTGATAAATCTTCTCCTTTTCT 58.884 40.000 0.00 0.00 0.00 2.52
2914 2966 6.037610 CGGGTGATAAATCTTCTCCTTTTCTG 59.962 42.308 0.00 0.00 0.00 3.02
2915 2967 6.887002 GGGTGATAAATCTTCTCCTTTTCTGT 59.113 38.462 0.00 0.00 0.00 3.41
2916 2968 8.047310 GGGTGATAAATCTTCTCCTTTTCTGTA 58.953 37.037 0.00 0.00 0.00 2.74
2917 2969 9.103861 GGTGATAAATCTTCTCCTTTTCTGTAG 57.896 37.037 0.00 0.00 0.00 2.74
2918 2970 9.660180 GTGATAAATCTTCTCCTTTTCTGTAGT 57.340 33.333 0.00 0.00 0.00 2.73
3106 3332 6.293081 GGAATGTGATGACTTATGGATTCGTG 60.293 42.308 0.00 0.00 0.00 4.35
3226 3455 6.061441 AGACACAGACAAAATGTATTGGACA 58.939 36.000 0.00 0.00 43.97 4.02
3241 3470 8.893219 TGTATTGGACATCTCATATGAAAGAC 57.107 34.615 6.90 4.62 31.20 3.01
3300 3529 2.673258 TGGAATAGCGGTCACAGGATA 58.327 47.619 0.00 0.00 0.00 2.59
3420 3649 6.015180 TGGAAATCCAACAATCCAAAGAAGAG 60.015 38.462 0.00 0.00 44.35 2.85
3499 3737 9.520515 AATGTAGTTTCATGAAGAAGGTACAAT 57.479 29.630 8.41 4.42 38.58 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.422970 ACAACAAGAATAACCATCCATGCAT 59.577 36.000 0.00 0.00 0.00 3.96
76 77 3.142174 GCATAGCTTCCAAGTGGGTATC 58.858 50.000 0.00 0.00 38.11 2.24
78 79 2.196595 AGCATAGCTTCCAAGTGGGTA 58.803 47.619 0.00 0.00 33.89 3.69
120 121 4.219288 AGATCCAGAGAACAAAAATGCCAC 59.781 41.667 0.00 0.00 0.00 5.01
121 122 4.219070 CAGATCCAGAGAACAAAAATGCCA 59.781 41.667 0.00 0.00 0.00 4.92
247 266 3.128465 CGTAGAACTAGACGGTTGGTC 57.872 52.381 0.00 0.00 46.45 4.02
254 273 9.727627 AATAGAAAATTACCGTAGAACTAGACG 57.272 33.333 0.00 0.00 38.79 4.18
336 355 4.344104 AGATAGAGGATAGAGGCTTCTGC 58.656 47.826 8.91 0.20 34.79 4.26
337 356 6.248433 AGAAGATAGAGGATAGAGGCTTCTG 58.752 44.000 8.91 0.00 39.29 3.02
338 357 6.468972 AGAAGATAGAGGATAGAGGCTTCT 57.531 41.667 3.00 3.00 36.84 2.85
339 358 7.502561 GGATAGAAGATAGAGGATAGAGGCTTC 59.497 44.444 0.00 0.00 0.00 3.86
340 359 7.036205 TGGATAGAAGATAGAGGATAGAGGCTT 60.036 40.741 0.00 0.00 0.00 4.35
341 360 6.450024 TGGATAGAAGATAGAGGATAGAGGCT 59.550 42.308 0.00 0.00 0.00 4.58
342 361 6.668645 TGGATAGAAGATAGAGGATAGAGGC 58.331 44.000 0.00 0.00 0.00 4.70
343 362 9.135189 CATTGGATAGAAGATAGAGGATAGAGG 57.865 40.741 0.00 0.00 0.00 3.69
344 363 8.632679 GCATTGGATAGAAGATAGAGGATAGAG 58.367 40.741 0.00 0.00 0.00 2.43
345 364 7.563188 GGCATTGGATAGAAGATAGAGGATAGA 59.437 40.741 0.00 0.00 0.00 1.98
346 365 7.344093 TGGCATTGGATAGAAGATAGAGGATAG 59.656 40.741 0.00 0.00 0.00 2.08
347 366 7.191918 TGGCATTGGATAGAAGATAGAGGATA 58.808 38.462 0.00 0.00 0.00 2.59
348 367 6.028131 TGGCATTGGATAGAAGATAGAGGAT 58.972 40.000 0.00 0.00 0.00 3.24
349 368 5.406163 TGGCATTGGATAGAAGATAGAGGA 58.594 41.667 0.00 0.00 0.00 3.71
350 369 5.248020 ACTGGCATTGGATAGAAGATAGAGG 59.752 44.000 0.00 0.00 0.00 3.69
351 370 6.357579 ACTGGCATTGGATAGAAGATAGAG 57.642 41.667 0.00 0.00 0.00 2.43
352 371 6.753913 AACTGGCATTGGATAGAAGATAGA 57.246 37.500 0.00 0.00 0.00 1.98
353 372 7.814264 AAAACTGGCATTGGATAGAAGATAG 57.186 36.000 0.00 0.00 0.00 2.08
393 412 7.604545 GCAAGAAAGACATAACCTTCTCTTAGT 59.395 37.037 0.00 0.00 0.00 2.24
394 413 7.821846 AGCAAGAAAGACATAACCTTCTCTTAG 59.178 37.037 0.00 0.00 0.00 2.18
395 414 7.680730 AGCAAGAAAGACATAACCTTCTCTTA 58.319 34.615 0.00 0.00 0.00 2.10
396 415 6.538263 AGCAAGAAAGACATAACCTTCTCTT 58.462 36.000 0.00 0.00 0.00 2.85
397 416 6.120507 AGCAAGAAAGACATAACCTTCTCT 57.879 37.500 0.00 0.00 0.00 3.10
398 417 7.984617 AGATAGCAAGAAAGACATAACCTTCTC 59.015 37.037 0.00 0.00 0.00 2.87
399 418 7.856415 AGATAGCAAGAAAGACATAACCTTCT 58.144 34.615 0.00 0.00 0.00 2.85
400 419 8.394121 CAAGATAGCAAGAAAGACATAACCTTC 58.606 37.037 0.00 0.00 0.00 3.46
401 420 7.885399 ACAAGATAGCAAGAAAGACATAACCTT 59.115 33.333 0.00 0.00 0.00 3.50
402 421 7.398024 ACAAGATAGCAAGAAAGACATAACCT 58.602 34.615 0.00 0.00 0.00 3.50
403 422 7.617041 ACAAGATAGCAAGAAAGACATAACC 57.383 36.000 0.00 0.00 0.00 2.85
404 423 9.372369 AGTACAAGATAGCAAGAAAGACATAAC 57.628 33.333 0.00 0.00 0.00 1.89
405 424 9.944376 AAGTACAAGATAGCAAGAAAGACATAA 57.056 29.630 0.00 0.00 0.00 1.90
406 425 9.587772 GAAGTACAAGATAGCAAGAAAGACATA 57.412 33.333 0.00 0.00 0.00 2.29
407 426 7.550906 GGAAGTACAAGATAGCAAGAAAGACAT 59.449 37.037 0.00 0.00 0.00 3.06
408 427 6.874134 GGAAGTACAAGATAGCAAGAAAGACA 59.126 38.462 0.00 0.00 0.00 3.41
409 428 7.100409 AGGAAGTACAAGATAGCAAGAAAGAC 58.900 38.462 0.00 0.00 0.00 3.01
410 429 7.179338 AGAGGAAGTACAAGATAGCAAGAAAGA 59.821 37.037 0.00 0.00 0.00 2.52
411 430 7.327214 AGAGGAAGTACAAGATAGCAAGAAAG 58.673 38.462 0.00 0.00 0.00 2.62
412 431 7.246171 AGAGGAAGTACAAGATAGCAAGAAA 57.754 36.000 0.00 0.00 0.00 2.52
413 432 6.859112 AGAGGAAGTACAAGATAGCAAGAA 57.141 37.500 0.00 0.00 0.00 2.52
414 433 6.859112 AAGAGGAAGTACAAGATAGCAAGA 57.141 37.500 0.00 0.00 0.00 3.02
421 440 4.142138 CGGCAGTAAGAGGAAGTACAAGAT 60.142 45.833 0.00 0.00 0.00 2.40
431 450 0.673644 GCTTTGCGGCAGTAAGAGGA 60.674 55.000 16.46 0.00 0.00 3.71
433 452 0.955428 TGGCTTTGCGGCAGTAAGAG 60.955 55.000 16.46 6.77 44.12 2.85
494 514 6.614694 TTTCTGGCACAACCTATTAGAGTA 57.385 37.500 0.00 0.00 38.70 2.59
495 515 5.499004 TTTCTGGCACAACCTATTAGAGT 57.501 39.130 0.00 0.00 38.70 3.24
496 516 5.297776 CCATTTCTGGCACAACCTATTAGAG 59.702 44.000 0.00 0.00 38.70 2.43
498 518 4.339247 CCCATTTCTGGCACAACCTATTAG 59.661 45.833 0.00 0.00 41.64 1.73
499 519 4.017958 TCCCATTTCTGGCACAACCTATTA 60.018 41.667 0.00 0.00 41.64 0.98
501 521 2.311542 TCCCATTTCTGGCACAACCTAT 59.688 45.455 0.00 0.00 41.64 2.57
502 522 1.707989 TCCCATTTCTGGCACAACCTA 59.292 47.619 0.00 0.00 41.64 3.08
503 523 0.482446 TCCCATTTCTGGCACAACCT 59.518 50.000 0.00 0.00 41.64 3.50
504 524 0.603065 GTCCCATTTCTGGCACAACC 59.397 55.000 0.00 0.00 41.64 3.77
514 534 3.760684 AGAGCATTCAACTGTCCCATTTC 59.239 43.478 0.00 0.00 0.00 2.17
523 543 7.701078 CCATTCTCAAATTAGAGCATTCAACTG 59.299 37.037 0.00 0.00 35.59 3.16
567 587 7.756722 GTCCACATTGACCAATCTCAAATAAAG 59.243 37.037 0.00 0.00 33.85 1.85
769 789 5.758784 AGCCTATAAAAGAACATTCGTAGGC 59.241 40.000 11.13 11.13 36.55 3.93
777 797 6.500589 TGCTAGGAGCCTATAAAAGAACAT 57.499 37.500 0.00 0.00 41.51 2.71
855 876 2.084300 CCATGGATGGGGTGGCCTA 61.084 63.158 5.56 0.00 44.31 3.93
915 936 2.198827 TAATGGTGTGCAGGGTTCAG 57.801 50.000 0.00 0.00 0.00 3.02
1053 1074 2.959484 GCACCACTGGGCAGCTAGA 61.959 63.158 0.00 0.00 37.90 2.43
1540 1561 9.712305 GTTTCATACTCCATTATGCTACAGTAT 57.288 33.333 0.00 0.00 30.60 2.12
1541 1562 8.700973 TGTTTCATACTCCATTATGCTACAGTA 58.299 33.333 0.00 0.00 30.60 2.74
1542 1563 7.564793 TGTTTCATACTCCATTATGCTACAGT 58.435 34.615 0.00 0.00 30.60 3.55
1543 1564 7.307632 GCTGTTTCATACTCCATTATGCTACAG 60.308 40.741 14.02 14.02 39.91 2.74
1544 1565 6.483307 GCTGTTTCATACTCCATTATGCTACA 59.517 38.462 0.00 0.00 30.60 2.74
1555 1576 2.935201 CTGCAGAGCTGTTTCATACTCC 59.065 50.000 8.42 0.00 0.00 3.85
1556 1577 3.854666 TCTGCAGAGCTGTTTCATACTC 58.145 45.455 13.74 0.00 0.00 2.59
1557 1578 3.969287 TCTGCAGAGCTGTTTCATACT 57.031 42.857 13.74 0.00 0.00 2.12
1558 1579 5.106396 ACAATTCTGCAGAGCTGTTTCATAC 60.106 40.000 21.08 0.00 0.00 2.39
1565 1586 2.681848 GCATACAATTCTGCAGAGCTGT 59.318 45.455 26.54 26.54 38.28 4.40
1579 1611 3.671459 CGTTTACGTGTCAGAGCATACAA 59.329 43.478 0.00 0.00 34.11 2.41
1861 1893 1.994507 AGCTGGAGGGAGGCAGAAG 60.995 63.158 0.00 0.00 0.00 2.85
1879 1911 6.493115 TGAAAAAGAGCTTGATTGATTACCCA 59.507 34.615 0.00 0.00 0.00 4.51
1893 1925 8.253113 TGAATGAAAAAGAACTGAAAAAGAGCT 58.747 29.630 0.00 0.00 0.00 4.09
1895 1927 9.578439 AGTGAATGAAAAAGAACTGAAAAAGAG 57.422 29.630 0.00 0.00 0.00 2.85
1896 1928 9.927668 AAGTGAATGAAAAAGAACTGAAAAAGA 57.072 25.926 0.00 0.00 0.00 2.52
1898 1930 9.703892 TGAAGTGAATGAAAAAGAACTGAAAAA 57.296 25.926 0.00 0.00 0.00 1.94
1899 1931 9.703892 TTGAAGTGAATGAAAAAGAACTGAAAA 57.296 25.926 0.00 0.00 0.00 2.29
1900 1932 9.874205 ATTGAAGTGAATGAAAAAGAACTGAAA 57.126 25.926 0.00 0.00 0.00 2.69
1960 1995 1.913778 AGCACATTTCAGCCATCACA 58.086 45.000 0.00 0.00 0.00 3.58
1961 1996 2.416431 GGAAGCACATTTCAGCCATCAC 60.416 50.000 0.00 0.00 0.00 3.06
1964 1999 0.813184 CGGAAGCACATTTCAGCCAT 59.187 50.000 0.00 0.00 0.00 4.40
1966 2001 0.881118 TTCGGAAGCACATTTCAGCC 59.119 50.000 0.00 0.00 0.00 4.85
1982 2017 4.211374 AGTTCTTGGTTCGTCAGAAATTCG 59.789 41.667 0.00 0.00 38.23 3.34
1987 2022 3.132289 ACTCAGTTCTTGGTTCGTCAGAA 59.868 43.478 0.00 0.00 0.00 3.02
1988 2023 2.693591 ACTCAGTTCTTGGTTCGTCAGA 59.306 45.455 0.00 0.00 0.00 3.27
1989 2024 3.099267 ACTCAGTTCTTGGTTCGTCAG 57.901 47.619 0.00 0.00 0.00 3.51
1990 2025 4.098960 AGTTACTCAGTTCTTGGTTCGTCA 59.901 41.667 0.00 0.00 0.00 4.35
1991 2026 4.618965 AGTTACTCAGTTCTTGGTTCGTC 58.381 43.478 0.00 0.00 0.00 4.20
1992 2027 4.098960 TGAGTTACTCAGTTCTTGGTTCGT 59.901 41.667 11.42 0.00 35.39 3.85
1993 2028 4.444720 GTGAGTTACTCAGTTCTTGGTTCG 59.555 45.833 16.04 0.00 41.46 3.95
1994 2029 5.234543 GTGTGAGTTACTCAGTTCTTGGTTC 59.765 44.000 16.04 0.53 41.46 3.62
1995 2030 5.116882 GTGTGAGTTACTCAGTTCTTGGTT 58.883 41.667 16.04 0.00 41.46 3.67
1996 2031 4.694339 GTGTGAGTTACTCAGTTCTTGGT 58.306 43.478 16.04 0.00 41.46 3.67
1997 2032 3.736252 CGTGTGAGTTACTCAGTTCTTGG 59.264 47.826 16.04 0.00 41.46 3.61
1998 2033 4.207224 CACGTGTGAGTTACTCAGTTCTTG 59.793 45.833 16.04 8.87 41.46 3.02
1999 2034 4.360563 CACGTGTGAGTTACTCAGTTCTT 58.639 43.478 16.04 0.55 41.46 2.52
2000 2035 3.795826 GCACGTGTGAGTTACTCAGTTCT 60.796 47.826 16.04 0.00 41.46 3.01
2006 2041 1.860676 TTGGCACGTGTGAGTTACTC 58.139 50.000 18.38 5.27 0.00 2.59
2007 2042 2.210116 CTTTGGCACGTGTGAGTTACT 58.790 47.619 18.38 0.00 0.00 2.24
2011 2046 1.014352 GAACTTTGGCACGTGTGAGT 58.986 50.000 18.38 12.56 0.00 3.41
2012 2047 0.042188 CGAACTTTGGCACGTGTGAG 60.042 55.000 18.38 11.95 0.00 3.51
2015 2050 0.741574 TGTCGAACTTTGGCACGTGT 60.742 50.000 18.38 0.00 0.00 4.49
2016 2051 0.042188 CTGTCGAACTTTGGCACGTG 60.042 55.000 12.28 12.28 0.00 4.49
2027 2062 4.921547 TCAGCTGTACATATCTGTCGAAC 58.078 43.478 14.67 0.00 36.79 3.95
2031 2066 7.065085 ACACAATTTCAGCTGTACATATCTGTC 59.935 37.037 14.67 0.00 36.79 3.51
2054 2090 9.243637 TCAAATTTACAGTATTTCAAAGCACAC 57.756 29.630 0.00 0.00 0.00 3.82
2125 2163 0.809385 CAGCAGGAGGAGCATTGTTG 59.191 55.000 0.00 0.00 0.00 3.33
2130 2168 0.035630 GTTGTCAGCAGGAGGAGCAT 60.036 55.000 0.00 0.00 0.00 3.79
2271 2309 1.066908 CACTTCCAACGCCATTGTTGT 59.933 47.619 5.96 0.00 46.08 3.32
2316 2354 1.315257 GGTGCTTCCGATGCCATTGT 61.315 55.000 3.96 0.00 0.00 2.71
2473 2511 1.740025 GCTGCAGGTATCAGAAACCAC 59.260 52.381 17.12 0.00 39.64 4.16
2483 2521 2.202797 CACGAGCGCTGCAGGTAT 60.203 61.111 18.48 0.00 0.00 2.73
2575 2613 3.459598 CCTAAGATCACCCAATCCCTCAA 59.540 47.826 0.00 0.00 0.00 3.02
2587 2625 0.102481 TCTTCCGCGCCTAAGATCAC 59.898 55.000 13.47 0.00 0.00 3.06
2633 2671 4.293494 TCCTACAAGATCTCTGCTTGGAT 58.707 43.478 0.00 0.00 45.31 3.41
2634 2672 3.703556 CTCCTACAAGATCTCTGCTTGGA 59.296 47.826 0.00 5.20 45.31 3.53
2642 2680 6.151985 TCTGTCAGAAACTCCTACAAGATCTC 59.848 42.308 0.00 0.00 0.00 2.75
2682 2720 3.704566 AGGGTTTCAAAGGGTTTCAAGTC 59.295 43.478 0.00 0.00 0.00 3.01
2685 2723 3.035363 GGAGGGTTTCAAAGGGTTTCAA 58.965 45.455 0.00 0.00 0.00 2.69
2686 2724 2.246327 AGGAGGGTTTCAAAGGGTTTCA 59.754 45.455 0.00 0.00 0.00 2.69
2687 2725 2.628178 CAGGAGGGTTTCAAAGGGTTTC 59.372 50.000 0.00 0.00 0.00 2.78
2688 2726 2.023404 ACAGGAGGGTTTCAAAGGGTTT 60.023 45.455 0.00 0.00 0.00 3.27
2689 2727 1.573857 ACAGGAGGGTTTCAAAGGGTT 59.426 47.619 0.00 0.00 0.00 4.11
2690 2728 1.231963 ACAGGAGGGTTTCAAAGGGT 58.768 50.000 0.00 0.00 0.00 4.34
2691 2729 3.739401 ATACAGGAGGGTTTCAAAGGG 57.261 47.619 0.00 0.00 0.00 3.95
2692 2730 4.662278 TGAATACAGGAGGGTTTCAAAGG 58.338 43.478 0.00 0.00 0.00 3.11
2693 2731 5.886960 CTGAATACAGGAGGGTTTCAAAG 57.113 43.478 0.00 0.00 40.14 2.77
2744 2782 5.134339 AGAAGCCAATATTTACATCTCCCCA 59.866 40.000 0.00 0.00 0.00 4.96
2871 2921 0.798776 CGGCAGTGCTAAAGTTCCTG 59.201 55.000 16.11 0.00 0.00 3.86
2888 2940 4.423625 AAGGAGAAGATTTATCACCCGG 57.576 45.455 0.00 0.00 0.00 5.73
2922 2974 8.282256 AGGGCTATTCAATTCAAACTACCTTAT 58.718 33.333 0.00 0.00 0.00 1.73
2923 2975 7.639378 AGGGCTATTCAATTCAAACTACCTTA 58.361 34.615 0.00 0.00 0.00 2.69
2925 2977 6.079712 AGGGCTATTCAATTCAAACTACCT 57.920 37.500 0.00 0.00 0.00 3.08
2926 2978 7.939588 AGATAGGGCTATTCAATTCAAACTACC 59.060 37.037 0.00 0.00 0.00 3.18
2927 2979 8.910351 AGATAGGGCTATTCAATTCAAACTAC 57.090 34.615 0.00 0.00 0.00 2.73
2959 3011 4.292041 TCTTGGGATGGGAAATTTCTCTCA 59.708 41.667 18.69 11.35 0.00 3.27
2972 3024 3.939740 TCCTCAGATTTCTTGGGATGG 57.060 47.619 0.00 0.00 0.00 3.51
3012 3065 4.141251 TCCAAAGAGTCCCTTAGTTGCTTT 60.141 41.667 0.00 0.00 34.00 3.51
3088 3152 4.751600 TCATGCACGAATCCATAAGTCATC 59.248 41.667 0.00 0.00 0.00 2.92
3226 3455 8.926374 AGTCTCATTCAGTCTTTCATATGAGAT 58.074 33.333 13.69 3.66 45.48 2.75
3241 3470 4.505808 ACATGAGCTCAAGTCTCATTCAG 58.494 43.478 22.50 1.90 45.99 3.02
3251 3480 7.042187 GGAAATACAGTATGACATGAGCTCAAG 60.042 40.741 22.50 19.57 39.69 3.02
3310 3539 1.786937 TGTGGTTGCTGGATTTTGGT 58.213 45.000 0.00 0.00 0.00 3.67
3481 3713 8.089625 TCCTATCATTGTACCTTCTTCATGAA 57.910 34.615 8.12 8.12 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.