Multiple sequence alignment - TraesCS7A01G253600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G253600 chr7A 100.000 5496 0 0 849 6344 239039188 239033693 0.000000e+00 10150
1 TraesCS7A01G253600 chr7A 100.000 394 0 0 1 394 239040036 239039643 0.000000e+00 728
2 TraesCS7A01G253600 chr7A 96.757 185 4 2 5812 5995 702614056 702613873 2.220000e-79 307
3 TraesCS7A01G253600 chr7A 95.676 185 7 1 5812 5995 98732035 98731851 4.810000e-76 296
4 TraesCS7A01G253600 chr7A 94.792 192 7 3 5811 5999 119302403 119302594 4.810000e-76 296
5 TraesCS7A01G253600 chr7A 90.811 185 10 5 5812 5992 730830676 730830857 2.290000e-59 241
6 TraesCS7A01G253600 chr7A 98.276 116 2 0 2447 2562 239037477 239037362 3.000000e-48 204
7 TraesCS7A01G253600 chr7A 98.276 116 2 0 2560 2675 239037590 239037475 3.000000e-48 204
8 TraesCS7A01G253600 chr7B 98.038 2192 40 3 2836 5025 198940624 198938434 0.000000e+00 3807
9 TraesCS7A01G253600 chr7B 95.863 1136 42 5 849 1982 198942578 198941446 0.000000e+00 1832
10 TraesCS7A01G253600 chr7B 90.909 770 29 9 5029 5766 198938333 198937573 0.000000e+00 996
11 TraesCS7A01G253600 chr7B 94.781 594 17 4 1980 2562 198941250 198940660 0.000000e+00 913
12 TraesCS7A01G253600 chr7B 93.147 394 20 5 1 393 198943059 198942672 7.140000e-159 571
13 TraesCS7A01G253600 chr7B 83.849 291 34 7 6044 6334 198936010 198935733 1.360000e-66 265
14 TraesCS7A01G253600 chr7B 94.891 137 7 0 2711 2847 489146902 489146766 1.390000e-51 215
15 TraesCS7A01G253600 chr7B 92.157 153 7 5 2704 2856 38563916 38563769 1.790000e-50 211
16 TraesCS7A01G253600 chr7B 90.964 166 2 3 2560 2714 198940784 198940621 1.790000e-50 211
17 TraesCS7A01G253600 chr7D 97.376 2172 48 5 2854 5025 227173043 227170881 0.000000e+00 3687
18 TraesCS7A01G253600 chr7D 94.679 1729 62 11 850 2559 227174806 227173089 0.000000e+00 2656
19 TraesCS7A01G253600 chr7D 88.227 739 27 14 5051 5762 227170810 227170105 0.000000e+00 828
20 TraesCS7A01G253600 chr7D 93.639 393 15 5 1 393 227175283 227174901 4.260000e-161 579
21 TraesCS7A01G253600 chr7D 87.742 310 33 4 6024 6331 227170104 227169798 2.180000e-94 357
22 TraesCS7A01G253600 chr7D 89.759 166 5 5 2560 2714 227173211 227173047 1.080000e-47 202
23 TraesCS7A01G253600 chr1A 96.739 184 4 2 5811 5993 585625022 585625204 7.990000e-79 305
24 TraesCS7A01G253600 chr1A 93.122 189 9 4 5811 5996 61717409 61717222 2.250000e-69 274
25 TraesCS7A01G253600 chr3A 93.269 208 7 6 5801 6004 713869063 713869267 3.720000e-77 300
26 TraesCS7A01G253600 chr3A 93.846 195 10 2 5808 6001 714166211 714166018 6.220000e-75 292
27 TraesCS7A01G253600 chr2A 91.623 191 7 4 5806 5993 753599260 753599444 8.160000e-64 255
28 TraesCS7A01G253600 chr2B 98.473 131 0 2 2710 2839 568032399 568032528 4.950000e-56 230
29 TraesCS7A01G253600 chr5B 96.212 132 5 0 2710 2841 555175600 555175731 3.850000e-52 217
30 TraesCS7A01G253600 chr5B 93.706 143 8 1 2713 2855 345346857 345346716 4.980000e-51 213
31 TraesCS7A01G253600 chr1B 95.588 136 4 2 2712 2847 613039456 613039589 3.850000e-52 217
32 TraesCS7A01G253600 chr1B 93.617 141 9 0 2710 2850 518809677 518809537 1.790000e-50 211
33 TraesCS7A01G253600 chr4B 94.286 140 7 1 2700 2839 607636943 607636805 4.980000e-51 213
34 TraesCS7A01G253600 chr1D 93.662 142 8 1 2711 2852 178459640 178459500 1.790000e-50 211


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G253600 chr7A 239033693 239040036 6343 True 2821.500000 10150 99.138000 1 6344 4 chr7A.!!$R3 6343
1 TraesCS7A01G253600 chr7B 198935733 198943059 7326 True 1227.857143 3807 92.507286 1 6334 7 chr7B.!!$R3 6333
2 TraesCS7A01G253600 chr7D 227169798 227175283 5485 True 1384.833333 3687 91.903667 1 6331 6 chr7D.!!$R1 6330

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 328 2.533232 CTAACCCACCCCACCCCA 60.533 66.667 0.00 0.0 0.00 4.96 F
1417 1420 0.098728 GTTATCGTGCACATGGCCAC 59.901 55.000 18.64 0.0 43.89 5.01 F
1418 1421 0.322008 TTATCGTGCACATGGCCACA 60.322 50.000 18.64 0.0 43.89 4.17 F
2731 2950 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.0 44.66 2.17 F
2734 2953 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 F
3318 3537 0.398948 ATGGTTTGATGGATGGGGGC 60.399 55.000 0.00 0.0 0.00 5.80 F
4228 4447 0.248843 CAAGGAGCCTCCAGTGAGTC 59.751 60.000 14.46 0.0 39.61 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 1836 0.179032 TGAAGTGCGTCACAACCCAT 60.179 50.0 11.58 0.00 36.74 4.00 R
2715 2934 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 R
2822 3041 0.549950 AGATACTCCCTCCGTCCGAA 59.450 55.0 0.00 0.00 0.00 4.30 R
4134 4353 0.105453 ACCTCCCCGCACTATCTGAT 60.105 55.0 0.00 0.00 0.00 2.90 R
4205 4424 0.397941 CACTGGAGGCTCCTTGTGAA 59.602 55.0 35.07 17.98 40.99 3.18 R
4796 5015 0.111061 ATCACCAGCAGCCAACTTCA 59.889 50.0 0.00 0.00 0.00 3.02 R
6122 7765 0.106708 TGACTCACTGCCACTTGGAC 59.893 55.0 0.00 0.00 37.39 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 7.836842 AGCACCGATATTTCCTTTAAAAACAT 58.163 30.769 0.00 0.00 0.00 2.71
326 328 2.533232 CTAACCCACCCCACCCCA 60.533 66.667 0.00 0.00 0.00 4.96
327 329 2.859971 TAACCCACCCCACCCCAC 60.860 66.667 0.00 0.00 0.00 4.61
393 395 4.120755 CCTCCCCCAGCTCAAGCC 62.121 72.222 0.00 0.00 43.38 4.35
874 876 3.536570 CCGGAAAGATCCTCCTTTTCTC 58.463 50.000 0.00 0.00 44.17 2.87
1182 1184 2.267426 GTGTTTGCTGGTGTTTTGTCC 58.733 47.619 0.00 0.00 0.00 4.02
1184 1186 2.564947 TGTTTGCTGGTGTTTTGTCCTT 59.435 40.909 0.00 0.00 0.00 3.36
1224 1226 3.815401 TCTGCTCTGTTTTTCCTGCTTAC 59.185 43.478 0.00 0.00 0.00 2.34
1271 1274 3.100862 GATTCTTGCGCGGTCAGGC 62.101 63.158 8.83 0.00 0.00 4.85
1304 1307 3.568007 TCCAGATGGTTGTGTTTGTTAGC 59.432 43.478 0.00 0.00 36.34 3.09
1353 1356 2.414559 GCATCTGATTTGGTTGTGGTCG 60.415 50.000 0.00 0.00 0.00 4.79
1360 1363 5.007034 TGATTTGGTTGTGGTCGTATGAAT 58.993 37.500 0.00 0.00 0.00 2.57
1387 1390 3.706698 TCGTCGATTGCTAGATTTCTGG 58.293 45.455 0.00 0.00 0.00 3.86
1388 1391 3.130516 TCGTCGATTGCTAGATTTCTGGT 59.869 43.478 0.00 0.00 0.00 4.00
1404 1407 2.094906 TCTGGTTCTGTCGGTGTTATCG 60.095 50.000 0.00 0.00 0.00 2.92
1417 1420 0.098728 GTTATCGTGCACATGGCCAC 59.901 55.000 18.64 0.00 43.89 5.01
1418 1421 0.322008 TTATCGTGCACATGGCCACA 60.322 50.000 18.64 0.00 43.89 4.17
1616 1619 3.775316 GGTAGACCCTCATCTTCCAAAGA 59.225 47.826 0.00 0.00 42.69 2.52
1689 1692 6.741724 ACCCAGGTATTTGATCCTAAACATT 58.258 36.000 0.00 0.00 32.26 2.71
1768 1771 7.047891 TGAACATGGATGACTTGTTATCTACC 58.952 38.462 0.00 0.00 44.58 3.18
1769 1772 5.601662 ACATGGATGACTTGTTATCTACCG 58.398 41.667 0.00 0.00 34.10 4.02
1806 1809 5.355071 TGATCACTTACCATCACAGATTTGC 59.645 40.000 0.00 0.00 0.00 3.68
1833 1836 5.115480 GCAAAGTGTTTTCCTGAATTTCCA 58.885 37.500 0.00 0.00 0.00 3.53
1844 1847 3.056607 CCTGAATTTCCATGGGTTGTGAC 60.057 47.826 13.02 0.00 0.00 3.67
1869 1872 6.139169 CGCACTTCATTTATTAAACGATGAGC 59.861 38.462 9.09 9.09 30.92 4.26
2104 2312 5.957842 TGTTATGTAACAAAAGCCTCCAG 57.042 39.130 3.25 0.00 42.66 3.86
2116 2324 1.518903 GCCTCCAGGTGTTGCTTGAC 61.519 60.000 0.00 0.00 37.57 3.18
2340 2548 3.942351 TGGTGTCTTCAGCATCCAG 57.058 52.632 0.00 0.00 45.34 3.86
2404 2612 9.661563 TGTAGAAGAAACAAAGTTCTCAAGTTA 57.338 29.630 0.00 0.00 36.84 2.24
2422 2630 6.267471 TCAAGTTATTGCAAGGAATCTGGTTT 59.733 34.615 4.94 0.00 36.30 3.27
2547 2766 9.971922 AATATCTTAAGATGGCATTGTTAAAGC 57.028 29.630 25.22 0.00 36.05 3.51
2548 2767 6.832520 TCTTAAGATGGCATTGTTAAAGCA 57.167 33.333 0.00 0.00 0.00 3.91
2549 2768 7.408756 TCTTAAGATGGCATTGTTAAAGCAT 57.591 32.000 0.00 0.00 0.00 3.79
2550 2769 8.518430 TCTTAAGATGGCATTGTTAAAGCATA 57.482 30.769 0.00 0.00 0.00 3.14
2551 2770 9.135189 TCTTAAGATGGCATTGTTAAAGCATAT 57.865 29.630 0.00 0.00 0.00 1.78
2552 2771 9.754382 CTTAAGATGGCATTGTTAAAGCATATT 57.246 29.630 0.00 0.00 0.00 1.28
2569 2788 9.646522 AAAGCATATTAATTAGTTCATGGGTCT 57.353 29.630 0.00 0.00 0.00 3.85
2579 2798 9.927081 AATTAGTTCATGGGTCTAAAATCATCT 57.073 29.630 0.00 0.00 0.00 2.90
2582 2801 7.512992 AGTTCATGGGTCTAAAATCATCTAGG 58.487 38.462 0.00 0.00 0.00 3.02
2583 2802 6.439636 TCATGGGTCTAAAATCATCTAGGG 57.560 41.667 0.00 0.00 0.00 3.53
2584 2803 4.706842 TGGGTCTAAAATCATCTAGGGC 57.293 45.455 0.00 0.00 0.00 5.19
2585 2804 4.307259 TGGGTCTAAAATCATCTAGGGCT 58.693 43.478 0.00 0.00 0.00 5.19
2586 2805 4.103153 TGGGTCTAAAATCATCTAGGGCTG 59.897 45.833 0.00 0.00 0.00 4.85
2587 2806 4.103311 GGGTCTAAAATCATCTAGGGCTGT 59.897 45.833 0.00 0.00 0.00 4.40
2588 2807 5.398012 GGGTCTAAAATCATCTAGGGCTGTT 60.398 44.000 0.00 0.00 0.00 3.16
2589 2808 6.183361 GGGTCTAAAATCATCTAGGGCTGTTA 60.183 42.308 0.00 0.00 0.00 2.41
2590 2809 7.280356 GGTCTAAAATCATCTAGGGCTGTTAA 58.720 38.462 0.00 0.00 0.00 2.01
2591 2810 7.939588 GGTCTAAAATCATCTAGGGCTGTTAAT 59.060 37.037 0.00 0.00 0.00 1.40
2592 2811 8.994170 GTCTAAAATCATCTAGGGCTGTTAATC 58.006 37.037 0.00 0.00 0.00 1.75
2593 2812 8.938883 TCTAAAATCATCTAGGGCTGTTAATCT 58.061 33.333 0.00 0.00 0.00 2.40
2594 2813 9.566432 CTAAAATCATCTAGGGCTGTTAATCTT 57.434 33.333 0.00 0.00 0.00 2.40
2595 2814 8.829373 AAAATCATCTAGGGCTGTTAATCTTT 57.171 30.769 0.00 0.00 0.00 2.52
2596 2815 7.814264 AATCATCTAGGGCTGTTAATCTTTG 57.186 36.000 0.00 0.00 0.00 2.77
2597 2816 5.126067 TCATCTAGGGCTGTTAATCTTTGC 58.874 41.667 0.00 0.00 0.00 3.68
2598 2817 4.568072 TCTAGGGCTGTTAATCTTTGCA 57.432 40.909 0.00 0.00 0.00 4.08
2599 2818 4.261801 TCTAGGGCTGTTAATCTTTGCAC 58.738 43.478 0.00 0.00 0.00 4.57
2600 2819 1.812571 AGGGCTGTTAATCTTTGCACG 59.187 47.619 0.00 0.00 31.59 5.34
2601 2820 1.135402 GGGCTGTTAATCTTTGCACGG 60.135 52.381 0.00 0.00 0.00 4.94
2602 2821 1.539827 GGCTGTTAATCTTTGCACGGT 59.460 47.619 0.00 0.00 0.00 4.83
2603 2822 2.745281 GGCTGTTAATCTTTGCACGGTA 59.255 45.455 0.00 0.00 0.00 4.02
2604 2823 3.189702 GGCTGTTAATCTTTGCACGGTAA 59.810 43.478 0.00 0.00 0.00 2.85
2605 2824 4.320641 GGCTGTTAATCTTTGCACGGTAAA 60.321 41.667 0.00 0.00 0.00 2.01
2606 2825 5.216648 GCTGTTAATCTTTGCACGGTAAAA 58.783 37.500 0.00 0.00 0.00 1.52
2607 2826 5.342259 GCTGTTAATCTTTGCACGGTAAAAG 59.658 40.000 8.46 8.46 35.20 2.27
2608 2827 6.380095 TGTTAATCTTTGCACGGTAAAAGT 57.620 33.333 12.53 1.77 35.38 2.66
2609 2828 6.797454 TGTTAATCTTTGCACGGTAAAAGTT 58.203 32.000 12.53 9.79 35.38 2.66
2610 2829 7.928103 TGTTAATCTTTGCACGGTAAAAGTTA 58.072 30.769 12.53 9.15 35.38 2.24
2611 2830 7.856894 TGTTAATCTTTGCACGGTAAAAGTTAC 59.143 33.333 12.53 8.70 35.38 2.50
2612 2831 4.816786 TCTTTGCACGGTAAAAGTTACC 57.183 40.909 7.06 7.06 35.38 2.85
2613 2832 4.197750 TCTTTGCACGGTAAAAGTTACCA 58.802 39.130 15.59 0.00 37.44 3.25
2614 2833 4.822896 TCTTTGCACGGTAAAAGTTACCAT 59.177 37.500 15.59 0.00 37.44 3.55
2615 2834 5.299782 TCTTTGCACGGTAAAAGTTACCATT 59.700 36.000 15.59 1.30 37.44 3.16
2616 2835 5.517322 TTGCACGGTAAAAGTTACCATTT 57.483 34.783 15.59 0.00 37.44 2.32
2617 2836 5.517322 TGCACGGTAAAAGTTACCATTTT 57.483 34.783 15.59 0.00 37.44 1.82
2618 2837 6.630444 TGCACGGTAAAAGTTACCATTTTA 57.370 33.333 15.59 0.00 37.44 1.52
2619 2838 7.216973 TGCACGGTAAAAGTTACCATTTTAT 57.783 32.000 15.59 0.00 37.44 1.40
2620 2839 8.332996 TGCACGGTAAAAGTTACCATTTTATA 57.667 30.769 15.59 0.00 37.44 0.98
2621 2840 8.790718 TGCACGGTAAAAGTTACCATTTTATAA 58.209 29.630 15.59 0.00 37.44 0.98
2622 2841 9.623350 GCACGGTAAAAGTTACCATTTTATAAA 57.377 29.630 15.59 0.00 37.44 1.40
2714 2933 1.022982 GCCGGGTAGCACCAAAGTAC 61.023 60.000 2.18 0.00 41.02 2.73
2715 2934 0.611714 CCGGGTAGCACCAAAGTACT 59.388 55.000 0.00 0.00 41.02 2.73
2716 2935 1.405121 CCGGGTAGCACCAAAGTACTC 60.405 57.143 0.00 0.00 41.02 2.59
2717 2936 1.405121 CGGGTAGCACCAAAGTACTCC 60.405 57.143 0.00 0.00 41.02 3.85
2718 2937 1.065636 GGGTAGCACCAAAGTACTCCC 60.066 57.143 0.00 0.00 41.02 4.30
2719 2938 1.907255 GGTAGCACCAAAGTACTCCCT 59.093 52.381 0.00 0.00 38.42 4.20
2720 2939 2.093606 GGTAGCACCAAAGTACTCCCTC 60.094 54.545 0.00 0.00 38.42 4.30
2721 2940 0.984995 AGCACCAAAGTACTCCCTCC 59.015 55.000 0.00 0.00 0.00 4.30
2722 2941 0.391263 GCACCAAAGTACTCCCTCCG 60.391 60.000 0.00 0.00 0.00 4.63
2723 2942 0.974383 CACCAAAGTACTCCCTCCGT 59.026 55.000 0.00 0.00 0.00 4.69
2724 2943 1.067071 CACCAAAGTACTCCCTCCGTC 60.067 57.143 0.00 0.00 0.00 4.79
2725 2944 0.535797 CCAAAGTACTCCCTCCGTCC 59.464 60.000 0.00 0.00 0.00 4.79
2726 2945 0.172803 CAAAGTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
2727 2946 0.969409 AAAGTACTCCCTCCGTCCGG 60.969 60.000 0.00 0.00 0.00 5.14
2728 2947 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2729 2948 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2730 2949 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2731 2950 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2732 2951 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2733 2952 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2734 2953 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2735 2954 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2736 2955 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2737 2956 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2738 2957 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2739 2958 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2740 2959 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2741 2960 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2742 2961 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2743 2962 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2744 2963 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2745 2964 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2746 2965 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2747 2966 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2748 2967 6.432783 TCCGGAAATACTTGTCATCAAAATGT 59.567 34.615 0.00 0.00 34.32 2.71
2749 2968 7.608376 TCCGGAAATACTTGTCATCAAAATGTA 59.392 33.333 0.00 0.00 34.32 2.29
2750 2969 7.696453 CCGGAAATACTTGTCATCAAAATGTAC 59.304 37.037 0.00 0.00 34.32 2.90
2751 2970 8.233868 CGGAAATACTTGTCATCAAAATGTACA 58.766 33.333 0.00 0.00 34.32 2.90
2752 2971 9.906660 GGAAATACTTGTCATCAAAATGTACAA 57.093 29.630 0.00 0.00 34.59 2.41
2757 2976 8.647143 ACTTGTCATCAAAATGTACAAAAAGG 57.353 30.769 0.00 0.00 34.98 3.11
2758 2977 7.710475 ACTTGTCATCAAAATGTACAAAAAGGG 59.290 33.333 0.00 0.00 34.98 3.95
2759 2978 7.353414 TGTCATCAAAATGTACAAAAAGGGA 57.647 32.000 0.00 0.00 34.32 4.20
2760 2979 7.961351 TGTCATCAAAATGTACAAAAAGGGAT 58.039 30.769 0.00 0.00 34.32 3.85
2761 2980 7.871973 TGTCATCAAAATGTACAAAAAGGGATG 59.128 33.333 0.00 9.08 34.32 3.51
2762 2981 7.872483 GTCATCAAAATGTACAAAAAGGGATGT 59.128 33.333 17.46 0.00 34.32 3.06
2763 2982 9.083422 TCATCAAAATGTACAAAAAGGGATGTA 57.917 29.630 17.46 8.29 34.32 2.29
2764 2983 9.874205 CATCAAAATGTACAAAAAGGGATGTAT 57.126 29.630 0.00 0.00 34.77 2.29
2766 2985 9.308000 TCAAAATGTACAAAAAGGGATGTATCT 57.692 29.630 0.00 0.00 34.77 1.98
2771 2990 9.614792 ATGTACAAAAAGGGATGTATCTAGAAC 57.385 33.333 0.00 0.00 34.77 3.01
2772 2991 8.822805 TGTACAAAAAGGGATGTATCTAGAACT 58.177 33.333 0.00 0.00 34.77 3.01
2794 3013 9.623350 GAACTAAAATACATCTAGATACGTCCC 57.377 37.037 4.54 0.00 0.00 4.46
2795 3014 8.120140 ACTAAAATACATCTAGATACGTCCCC 57.880 38.462 4.54 0.00 0.00 4.81
2796 3015 7.949006 ACTAAAATACATCTAGATACGTCCCCT 59.051 37.037 4.54 0.00 0.00 4.79
2797 3016 7.613551 AAAATACATCTAGATACGTCCCCTT 57.386 36.000 4.54 0.00 0.00 3.95
2798 3017 7.613551 AAATACATCTAGATACGTCCCCTTT 57.386 36.000 4.54 0.00 0.00 3.11
2799 3018 7.613551 AATACATCTAGATACGTCCCCTTTT 57.386 36.000 4.54 0.00 0.00 2.27
2800 3019 8.716674 AATACATCTAGATACGTCCCCTTTTA 57.283 34.615 4.54 0.00 0.00 1.52
2801 3020 8.896722 ATACATCTAGATACGTCCCCTTTTAT 57.103 34.615 4.54 0.00 0.00 1.40
2802 3021 7.613551 ACATCTAGATACGTCCCCTTTTATT 57.386 36.000 4.54 0.00 0.00 1.40
2803 3022 8.030913 ACATCTAGATACGTCCCCTTTTATTT 57.969 34.615 4.54 0.00 0.00 1.40
2804 3023 9.151177 ACATCTAGATACGTCCCCTTTTATTTA 57.849 33.333 4.54 0.00 0.00 1.40
2810 3029 9.689501 AGATACGTCCCCTTTTATTTATTTTGA 57.310 29.630 0.00 0.00 0.00 2.69
2813 3032 8.356000 ACGTCCCCTTTTATTTATTTTGATGA 57.644 30.769 0.00 0.00 0.00 2.92
2814 3033 8.248253 ACGTCCCCTTTTATTTATTTTGATGAC 58.752 33.333 0.00 0.00 0.00 3.06
2815 3034 8.247562 CGTCCCCTTTTATTTATTTTGATGACA 58.752 33.333 0.00 0.00 0.00 3.58
2816 3035 9.936759 GTCCCCTTTTATTTATTTTGATGACAA 57.063 29.630 0.00 0.00 0.00 3.18
2818 3037 9.942850 CCCCTTTTATTTATTTTGATGACAAGT 57.057 29.630 0.00 0.00 37.32 3.16
2828 3047 9.834628 TTATTTTGATGACAAGTATTTTCGGAC 57.165 29.630 0.00 0.00 37.32 4.79
2829 3048 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2830 3049 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2831 3050 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2832 3051 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2833 3052 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2834 3053 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2835 3054 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2836 3055 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2837 3056 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2838 3057 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2839 3058 1.856629 TTTTCGGACGGAGGGAGTAT 58.143 50.000 0.00 0.00 0.00 2.12
2840 3059 1.396653 TTTCGGACGGAGGGAGTATC 58.603 55.000 0.00 0.00 0.00 2.24
2847 3066 3.506844 GGACGGAGGGAGTATCTTACATC 59.493 52.174 0.00 0.00 33.73 3.06
2923 3142 8.915871 TCTTCTTGTTTAATTGCTGAATATGC 57.084 30.769 0.00 0.00 0.00 3.14
2924 3143 8.522003 TCTTCTTGTTTAATTGCTGAATATGCA 58.478 29.630 0.00 0.00 38.80 3.96
2925 3144 9.309516 CTTCTTGTTTAATTGCTGAATATGCAT 57.690 29.630 3.79 3.79 40.34 3.96
3006 3225 5.869344 TGTTCTTCAGGTCGACATTGATAAG 59.131 40.000 18.91 14.36 0.00 1.73
3318 3537 0.398948 ATGGTTTGATGGATGGGGGC 60.399 55.000 0.00 0.00 0.00 5.80
3321 3540 2.621445 TTTGATGGATGGGGGCGGT 61.621 57.895 0.00 0.00 0.00 5.68
3384 3603 3.215151 TGGATCTAGCTCAAGTCTACCG 58.785 50.000 0.00 0.00 0.00 4.02
3411 3630 1.830279 TTGAAGCCTCCTCAGCATTG 58.170 50.000 0.00 0.00 0.00 2.82
3874 4093 8.127327 GCGAGTATGACAGAGTTAACAGTATTA 58.873 37.037 8.61 0.00 0.00 0.98
3956 4175 2.694628 AGCAGTGGAGAAATTTGCACAA 59.305 40.909 0.00 0.00 41.31 3.33
4023 4242 9.739276 TTCAGCAGAGAAATAAAGAAATCCTTA 57.261 29.630 0.00 0.00 34.00 2.69
4043 4262 1.035139 AGGCAGAAGCTTGGTTTGTG 58.965 50.000 2.10 0.00 41.70 3.33
4100 4319 3.807553 TCAGTGTGAAAAGTGATGCTCA 58.192 40.909 0.00 0.00 0.00 4.26
4130 4349 3.944476 GGCGATGCCTTCTGGATAT 57.056 52.632 0.00 0.00 46.69 1.63
4134 4353 4.072131 GGCGATGCCTTCTGGATATTTTA 58.928 43.478 0.00 0.00 46.69 1.52
4145 4364 9.160496 CCTTCTGGATATTTTATCAGATAGTGC 57.840 37.037 0.00 0.00 36.34 4.40
4205 4424 6.678568 AGATGAATTCCCTATCGTCTCAAT 57.321 37.500 2.27 0.00 37.35 2.57
4228 4447 0.248843 CAAGGAGCCTCCAGTGAGTC 59.751 60.000 14.46 0.00 39.61 3.36
4736 4955 1.661341 AGCGGTGAGAAATCAGATGC 58.339 50.000 0.00 0.00 0.00 3.91
4753 4972 3.944015 AGATGCTAAAGATGCTGTTGACC 59.056 43.478 0.00 0.00 0.00 4.02
4902 5121 7.292713 TCATATGCAACATCATTTATTGCCT 57.707 32.000 5.79 0.00 46.53 4.75
4909 5128 5.075858 ACATCATTTATTGCCTTGTGTGG 57.924 39.130 0.00 0.00 0.00 4.17
4947 5166 9.771534 AGTCTCTATCCTGATAAAAGTATTTGC 57.228 33.333 0.00 0.00 39.02 3.68
5025 5244 4.686091 TGCGTTCTGAAGTCATTAGTGAAG 59.314 41.667 0.00 0.00 35.80 3.02
5027 5246 5.388890 GCGTTCTGAAGTCATTAGTGAAGTG 60.389 44.000 0.00 0.00 35.80 3.16
5042 5358 4.160252 AGTGAAGTGTGTGCCAAAAGAAAT 59.840 37.500 0.00 0.00 0.00 2.17
5044 5360 5.458779 GTGAAGTGTGTGCCAAAAGAAATAC 59.541 40.000 0.00 0.00 0.00 1.89
5053 5369 4.343526 TGCCAAAAGAAATACTTGCCTGAA 59.656 37.500 0.00 0.00 38.98 3.02
5088 5404 9.860898 ATTCTTCTGTATCTTTATTTGCCAAAC 57.139 29.630 0.00 0.00 0.00 2.93
5089 5405 8.402798 TCTTCTGTATCTTTATTTGCCAAACA 57.597 30.769 0.00 0.00 0.00 2.83
5090 5406 9.023962 TCTTCTGTATCTTTATTTGCCAAACAT 57.976 29.630 0.00 0.00 0.00 2.71
5091 5407 8.984891 TTCTGTATCTTTATTTGCCAAACATG 57.015 30.769 0.00 0.00 0.00 3.21
5106 5422 5.681954 GCCAAACATGCATGTATGGTGTAAT 60.682 40.000 31.55 10.81 40.80 1.89
5116 5432 7.069702 TGCATGTATGGTGTAATTTGGATCATT 59.930 33.333 0.00 0.00 0.00 2.57
5143 5459 9.144747 CCTATCTATGTATGCATCACTAACAAC 57.855 37.037 0.19 0.00 36.58 3.32
5161 5477 4.825422 ACAACGGATCATGCCTATCTATG 58.175 43.478 0.00 0.00 0.00 2.23
5260 5576 3.107642 TGGAGAACTTCTCGAACAACC 57.892 47.619 11.85 0.00 44.28 3.77
5343 5681 2.575694 ACTTGCTCAGCGAGATGTAG 57.424 50.000 21.69 0.00 42.27 2.74
5372 5714 2.155197 ATCTGTTCCTGCCCAACCCC 62.155 60.000 0.00 0.00 0.00 4.95
5373 5715 2.780924 TGTTCCTGCCCAACCCCT 60.781 61.111 0.00 0.00 0.00 4.79
5414 5764 0.749454 GGCCTGCCTGGTGATAACAG 60.749 60.000 0.00 0.00 38.35 3.16
5415 5765 1.379642 GCCTGCCTGGTGATAACAGC 61.380 60.000 0.00 0.00 43.75 4.40
5497 5847 8.321353 TGTACATATAGGTTCCATTGGATCATC 58.679 37.037 6.15 0.00 0.00 2.92
5542 5896 4.439305 AATTAAGGCACTGTACGTACGA 57.561 40.909 24.41 9.08 40.86 3.43
5560 5914 2.165845 ACGAACCTAAGGAACTCCGATG 59.834 50.000 0.00 0.00 38.49 3.84
5706 6062 6.044682 AGTTCCATTGCTTCAGTTTTCTTTG 58.955 36.000 0.00 0.00 0.00 2.77
5711 6067 4.032703 TGCTTCAGTTTTCTTTGCTGTC 57.967 40.909 0.00 0.00 0.00 3.51
5713 6070 3.621794 CTTCAGTTTTCTTTGCTGTCGG 58.378 45.455 0.00 0.00 0.00 4.79
5717 6074 2.709629 TTTTCTTTGCTGTCGGCGCG 62.710 55.000 0.00 0.00 45.43 6.86
5766 6123 4.223032 GGTCATCCTCAGTCAGGTTCTAAA 59.777 45.833 0.00 0.00 43.95 1.85
5768 6125 6.410540 GTCATCCTCAGTCAGGTTCTAAAAT 58.589 40.000 0.00 0.00 43.95 1.82
5769 6126 6.314896 GTCATCCTCAGTCAGGTTCTAAAATG 59.685 42.308 0.00 0.00 43.95 2.32
5770 6127 5.825593 TCCTCAGTCAGGTTCTAAAATGT 57.174 39.130 0.00 0.00 43.95 2.71
5771 6128 5.794894 TCCTCAGTCAGGTTCTAAAATGTC 58.205 41.667 0.00 0.00 43.95 3.06
5772 6129 4.938226 CCTCAGTCAGGTTCTAAAATGTCC 59.062 45.833 0.00 0.00 37.53 4.02
5773 6130 4.906618 TCAGTCAGGTTCTAAAATGTCCC 58.093 43.478 0.00 0.00 0.00 4.46
5776 6133 2.026636 TCAGGTTCTAAAATGTCCCCCG 60.027 50.000 0.00 0.00 0.00 5.73
5777 6134 1.100510 GGTTCTAAAATGTCCCCCGC 58.899 55.000 0.00 0.00 0.00 6.13
5780 6137 0.988832 TCTAAAATGTCCCCCGCTGT 59.011 50.000 0.00 0.00 0.00 4.40
5782 6139 0.693622 TAAAATGTCCCCCGCTGTGA 59.306 50.000 0.00 0.00 0.00 3.58
5801 6158 4.722389 GGGACGTAGGAAGGGGAT 57.278 61.111 0.00 0.00 0.00 3.85
5802 6159 3.856774 GGGACGTAGGAAGGGGATA 57.143 57.895 0.00 0.00 0.00 2.59
5803 6160 2.092598 GGGACGTAGGAAGGGGATAA 57.907 55.000 0.00 0.00 0.00 1.75
5804 6161 2.617658 GGGACGTAGGAAGGGGATAAT 58.382 52.381 0.00 0.00 0.00 1.28
5809 6166 5.397109 GGACGTAGGAAGGGGATAATTTTGA 60.397 44.000 0.00 0.00 0.00 2.69
5811 6168 6.296803 ACGTAGGAAGGGGATAATTTTGATC 58.703 40.000 0.00 0.00 0.00 2.92
5812 6169 6.126594 ACGTAGGAAGGGGATAATTTTGATCA 60.127 38.462 0.00 0.00 0.00 2.92
5814 6171 6.347061 AGGAAGGGGATAATTTTGATCAGT 57.653 37.500 0.00 0.00 0.00 3.41
5816 6173 7.191918 AGGAAGGGGATAATTTTGATCAGTTT 58.808 34.615 0.00 0.00 0.00 2.66
5818 6175 7.093333 GGAAGGGGATAATTTTGATCAGTTTGT 60.093 37.037 0.00 0.00 0.00 2.83
5820 6177 7.184862 AGGGGATAATTTTGATCAGTTTGTCT 58.815 34.615 0.00 0.00 0.00 3.41
5821 6178 8.336235 AGGGGATAATTTTGATCAGTTTGTCTA 58.664 33.333 0.00 0.00 0.00 2.59
5822 6179 8.966868 GGGGATAATTTTGATCAGTTTGTCTAA 58.033 33.333 0.00 0.00 0.00 2.10
5830 6187 9.897744 TTTTGATCAGTTTGTCTAATTCACATC 57.102 29.630 0.00 0.00 0.00 3.06
5832 6189 9.942850 TTGATCAGTTTGTCTAATTCACATCTA 57.057 29.630 0.00 0.00 0.00 1.98
5834 6191 9.809096 GATCAGTTTGTCTAATTCACATCTAGA 57.191 33.333 0.00 0.00 0.00 2.43
5861 6218 9.295825 TGTTTTTAATGATGTCACATCTAACCT 57.704 29.630 18.72 1.84 0.00 3.50
5862 6219 9.774742 GTTTTTAATGATGTCACATCTAACCTC 57.225 33.333 18.72 0.00 0.00 3.85
5864 6221 5.965033 AATGATGTCACATCTAACCTCCT 57.035 39.130 18.72 0.00 0.00 3.69
5865 6222 8.547481 TTAATGATGTCACATCTAACCTCCTA 57.453 34.615 18.72 0.00 0.00 2.94
5866 6223 7.437713 AATGATGTCACATCTAACCTCCTAA 57.562 36.000 18.72 0.00 0.00 2.69
5867 6224 6.867519 TGATGTCACATCTAACCTCCTAAA 57.132 37.500 18.72 0.00 0.00 1.85
5868 6225 7.252612 TGATGTCACATCTAACCTCCTAAAA 57.747 36.000 18.72 0.00 0.00 1.52
5869 6226 7.685481 TGATGTCACATCTAACCTCCTAAAAA 58.315 34.615 18.72 0.00 0.00 1.94
5870 6227 8.328758 TGATGTCACATCTAACCTCCTAAAAAT 58.671 33.333 18.72 0.00 0.00 1.82
5871 6228 9.832445 GATGTCACATCTAACCTCCTAAAAATA 57.168 33.333 10.81 0.00 0.00 1.40
5874 6231 9.668497 GTCACATCTAACCTCCTAAAAATAACT 57.332 33.333 0.00 0.00 0.00 2.24
5877 6234 9.813446 ACATCTAACCTCCTAAAAATAACTACG 57.187 33.333 0.00 0.00 0.00 3.51
5878 6235 8.762426 CATCTAACCTCCTAAAAATAACTACGC 58.238 37.037 0.00 0.00 0.00 4.42
5879 6236 7.839907 TCTAACCTCCTAAAAATAACTACGCA 58.160 34.615 0.00 0.00 0.00 5.24
5880 6237 6.980051 AACCTCCTAAAAATAACTACGCAG 57.020 37.500 0.00 0.00 0.00 5.18
5881 6238 4.874396 ACCTCCTAAAAATAACTACGCAGC 59.126 41.667 0.00 0.00 0.00 5.25
5882 6239 4.873827 CCTCCTAAAAATAACTACGCAGCA 59.126 41.667 0.00 0.00 0.00 4.41
5883 6240 5.353123 CCTCCTAAAAATAACTACGCAGCAA 59.647 40.000 0.00 0.00 0.00 3.91
5884 6241 6.173191 TCCTAAAAATAACTACGCAGCAAC 57.827 37.500 0.00 0.00 0.00 4.17
5885 6242 5.701750 TCCTAAAAATAACTACGCAGCAACA 59.298 36.000 0.00 0.00 0.00 3.33
5886 6243 6.205076 TCCTAAAAATAACTACGCAGCAACAA 59.795 34.615 0.00 0.00 0.00 2.83
5888 6245 5.682943 AAAATAACTACGCAGCAACAAGA 57.317 34.783 0.00 0.00 0.00 3.02
5889 6246 5.682943 AAATAACTACGCAGCAACAAGAA 57.317 34.783 0.00 0.00 0.00 2.52
5890 6247 5.682943 AATAACTACGCAGCAACAAGAAA 57.317 34.783 0.00 0.00 0.00 2.52
5891 6248 5.880054 ATAACTACGCAGCAACAAGAAAT 57.120 34.783 0.00 0.00 0.00 2.17
5894 6251 5.682943 ACTACGCAGCAACAAGAAATAAA 57.317 34.783 0.00 0.00 0.00 1.40
5895 6252 6.067263 ACTACGCAGCAACAAGAAATAAAA 57.933 33.333 0.00 0.00 0.00 1.52
5896 6253 6.500041 ACTACGCAGCAACAAGAAATAAAAA 58.500 32.000 0.00 0.00 0.00 1.94
5936 6293 5.683876 AGATAGACCACAAACATAGTGCT 57.316 39.130 0.00 0.00 35.69 4.40
5938 6295 7.182817 AGATAGACCACAAACATAGTGCTTA 57.817 36.000 0.00 0.00 35.69 3.09
5939 6296 7.796054 AGATAGACCACAAACATAGTGCTTAT 58.204 34.615 0.00 0.00 35.69 1.73
5941 6298 5.804639 AGACCACAAACATAGTGCTTATCA 58.195 37.500 0.00 0.00 35.69 2.15
5943 6300 4.943705 ACCACAAACATAGTGCTTATCAGG 59.056 41.667 0.00 0.00 35.69 3.86
5944 6301 4.943705 CCACAAACATAGTGCTTATCAGGT 59.056 41.667 0.00 0.00 35.69 4.00
5945 6302 5.415701 CCACAAACATAGTGCTTATCAGGTT 59.584 40.000 0.00 0.00 35.69 3.50
5946 6303 6.597672 CCACAAACATAGTGCTTATCAGGTTA 59.402 38.462 0.00 0.00 35.69 2.85
5947 6304 7.201644 CCACAAACATAGTGCTTATCAGGTTAG 60.202 40.741 0.00 0.00 35.69 2.34
5948 6305 7.549134 CACAAACATAGTGCTTATCAGGTTAGA 59.451 37.037 0.00 0.00 0.00 2.10
5949 6306 8.267894 ACAAACATAGTGCTTATCAGGTTAGAT 58.732 33.333 0.00 0.00 0.00 1.98
5950 6307 8.554528 CAAACATAGTGCTTATCAGGTTAGATG 58.445 37.037 0.00 0.00 0.00 2.90
5951 6308 7.366847 ACATAGTGCTTATCAGGTTAGATGT 57.633 36.000 0.00 0.00 0.00 3.06
5952 6309 7.212976 ACATAGTGCTTATCAGGTTAGATGTG 58.787 38.462 0.00 0.00 0.00 3.21
5953 6310 5.939764 AGTGCTTATCAGGTTAGATGTGA 57.060 39.130 0.00 0.00 0.00 3.58
5955 6312 5.187772 AGTGCTTATCAGGTTAGATGTGACA 59.812 40.000 0.00 0.00 0.00 3.58
5956 6313 6.051717 GTGCTTATCAGGTTAGATGTGACAT 58.948 40.000 0.00 0.00 0.00 3.06
5958 6315 7.710907 GTGCTTATCAGGTTAGATGTGACATAA 59.289 37.037 0.00 0.00 0.00 1.90
5990 6347 6.312399 CATCTAGATGTGTCCTAGACAGAC 57.688 45.833 22.42 0.00 43.57 3.51
5991 6348 4.783055 TCTAGATGTGTCCTAGACAGACC 58.217 47.826 0.00 0.00 43.57 3.85
5992 6349 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
5993 6350 2.043115 AGATGTGTCCTAGACAGACCCA 59.957 50.000 0.00 0.00 43.57 4.51
5994 6351 2.391926 TGTGTCCTAGACAGACCCAA 57.608 50.000 0.00 0.00 43.57 4.12
5995 6352 2.902608 TGTGTCCTAGACAGACCCAAT 58.097 47.619 0.00 0.00 43.57 3.16
5997 6354 3.650942 TGTGTCCTAGACAGACCCAATTT 59.349 43.478 0.00 0.00 43.57 1.82
5998 6355 4.104102 TGTGTCCTAGACAGACCCAATTTT 59.896 41.667 0.00 0.00 43.57 1.82
5999 6356 4.455877 GTGTCCTAGACAGACCCAATTTTG 59.544 45.833 0.00 0.00 43.57 2.44
6000 6357 4.349636 TGTCCTAGACAGACCCAATTTTGA 59.650 41.667 0.00 0.00 37.67 2.69
6001 6358 5.014123 TGTCCTAGACAGACCCAATTTTGAT 59.986 40.000 0.00 0.00 37.67 2.57
6002 6359 5.946377 GTCCTAGACAGACCCAATTTTGATT 59.054 40.000 0.00 0.00 32.09 2.57
6003 6360 7.110155 GTCCTAGACAGACCCAATTTTGATTA 58.890 38.462 0.00 0.00 32.09 1.75
6005 6362 6.543831 CCTAGACAGACCCAATTTTGATTAGG 59.456 42.308 0.00 0.00 0.00 2.69
6006 6363 5.264395 AGACAGACCCAATTTTGATTAGGG 58.736 41.667 0.00 0.00 45.20 3.53
6007 6364 4.352893 ACAGACCCAATTTTGATTAGGGG 58.647 43.478 0.00 0.00 43.96 4.79
6012 6369 3.960755 CCCAATTTTGATTAGGGGTCCTC 59.039 47.826 0.00 0.00 35.83 3.71
6014 6371 4.523083 CAATTTTGATTAGGGGTCCTCGA 58.477 43.478 0.00 0.00 34.61 4.04
6015 6372 3.906720 TTTTGATTAGGGGTCCTCGAG 57.093 47.619 5.13 5.13 34.61 4.04
6016 6373 1.789523 TTGATTAGGGGTCCTCGAGG 58.210 55.000 26.32 26.32 34.61 4.63
6017 6374 0.931468 TGATTAGGGGTCCTCGAGGA 59.069 55.000 30.49 30.49 43.08 3.71
6041 7683 4.821589 GAGCGGTCGGGCTTCCAG 62.822 72.222 0.00 0.00 44.93 3.86
6048 7690 2.202932 CGGGCTTCCAGACATCCG 60.203 66.667 0.00 0.00 0.00 4.18
6050 7692 2.514824 GGCTTCCAGACATCCGGC 60.515 66.667 0.00 0.00 0.00 6.13
6122 7765 1.722011 ACTACACCGCGATTTCCAAG 58.278 50.000 8.23 0.00 0.00 3.61
6145 7788 0.250209 AAGTGGCAGTGAGTCAGCAG 60.250 55.000 6.69 0.00 28.23 4.24
6182 7825 1.079819 ACCTCCACAGCGATTGACG 60.080 57.895 0.00 0.00 45.66 4.35
6183 7826 1.215382 CCTCCACAGCGATTGACGA 59.785 57.895 0.00 0.00 45.77 4.20
6184 7827 1.078759 CCTCCACAGCGATTGACGAC 61.079 60.000 0.00 0.00 45.77 4.34
6185 7828 0.109086 CTCCACAGCGATTGACGACT 60.109 55.000 0.00 0.00 45.77 4.18
6201 7844 5.597806 TGACGACTTTGACTACACAAGATT 58.402 37.500 0.00 0.00 0.00 2.40
6204 7847 6.046593 ACGACTTTGACTACACAAGATTGAA 58.953 36.000 0.00 0.00 0.00 2.69
6224 7867 0.385223 CAGTTTCAGTTCGCTGCTGC 60.385 55.000 5.34 5.34 44.62 5.25
6235 7878 1.145598 GCTGCTGCCTGCTCAGATA 59.854 57.895 3.85 0.00 43.37 1.98
6259 7902 2.044946 GCATCAAGGCTTCGGGGT 60.045 61.111 0.00 0.00 0.00 4.95
6274 7917 1.269051 CGGGGTTTTGCTCAACAGAAC 60.269 52.381 1.71 0.00 41.50 3.01
6281 7924 0.961019 TGCTCAACAGAACCAATGGC 59.039 50.000 0.00 0.00 0.00 4.40
6306 7950 4.290155 CGCCTATTCCAAACATGCATTAC 58.710 43.478 0.00 0.00 0.00 1.89
6309 7953 5.507985 GCCTATTCCAAACATGCATTACTCC 60.508 44.000 0.00 0.00 0.00 3.85
6320 7964 4.689612 TGCATTACTCCCTCTATTCCAC 57.310 45.455 0.00 0.00 0.00 4.02
6322 7966 4.660303 TGCATTACTCCCTCTATTCCACAT 59.340 41.667 0.00 0.00 0.00 3.21
6323 7967 4.999950 GCATTACTCCCTCTATTCCACATG 59.000 45.833 0.00 0.00 0.00 3.21
6338 7982 3.367992 CACATGTAAGGTGCAAGCAAA 57.632 42.857 0.00 0.00 43.71 3.68
6339 7983 3.715495 CACATGTAAGGTGCAAGCAAAA 58.285 40.909 0.00 0.00 43.71 2.44
6340 7984 4.309099 CACATGTAAGGTGCAAGCAAAAT 58.691 39.130 0.00 0.00 43.71 1.82
6341 7985 5.468592 CACATGTAAGGTGCAAGCAAAATA 58.531 37.500 0.00 0.00 43.71 1.40
6342 7986 6.101332 CACATGTAAGGTGCAAGCAAAATAT 58.899 36.000 0.00 0.00 43.71 1.28
6343 7987 7.257003 CACATGTAAGGTGCAAGCAAAATATA 58.743 34.615 0.00 0.00 43.71 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 8.907222 ATTGGCATTTTCTTGTTCTTTAATGT 57.093 26.923 0.00 0.00 0.00 2.71
265 267 7.996758 AGGTCTCCCTCTTATTATTTTCTCA 57.003 36.000 0.00 0.00 35.62 3.27
327 329 4.825679 GAGGACAGGGGGAGGGGG 62.826 77.778 0.00 0.00 0.00 5.40
328 330 4.825679 GGAGGACAGGGGGAGGGG 62.826 77.778 0.00 0.00 0.00 4.79
329 331 3.579451 TTGGAGGACAGGGGGAGGG 62.579 68.421 0.00 0.00 0.00 4.30
330 332 1.997874 CTTGGAGGACAGGGGGAGG 60.998 68.421 0.00 0.00 0.00 4.30
334 336 1.225704 GATGCTTGGAGGACAGGGG 59.774 63.158 0.00 0.00 0.00 4.79
339 341 1.450312 CGGTGGATGCTTGGAGGAC 60.450 63.158 0.00 0.00 0.00 3.85
874 876 2.489971 TCTGTAGCAAAGTGGAAACCG 58.510 47.619 0.00 0.00 0.00 4.44
905 907 3.496884 ACGTGGCCAAAACGCTATATATG 59.503 43.478 7.24 0.00 44.80 1.78
1182 1184 3.708195 CAGATTCCTGCCGCAAAAG 57.292 52.632 0.00 0.00 33.07 2.27
1224 1226 1.398390 GCATAACAAGAACGAGCCAGG 59.602 52.381 0.00 0.00 0.00 4.45
1271 1274 2.346803 ACCATCTGGACGAAATCAACG 58.653 47.619 2.55 0.00 38.94 4.10
1304 1307 3.552699 CAGCCGGTGATTGCATTAATTTG 59.447 43.478 1.90 0.00 0.00 2.32
1353 1356 6.030849 AGCAATCGACGAGCTATATTCATAC 58.969 40.000 9.62 0.00 36.73 2.39
1360 1363 5.881777 AATCTAGCAATCGACGAGCTATA 57.118 39.130 16.38 11.40 39.83 1.31
1387 1390 1.389106 GCACGATAACACCGACAGAAC 59.611 52.381 0.00 0.00 0.00 3.01
1388 1391 1.000052 TGCACGATAACACCGACAGAA 60.000 47.619 0.00 0.00 0.00 3.02
1417 1420 4.811908 TCTCATGAAACAAACATGGCATG 58.188 39.130 25.31 25.31 43.38 4.06
1418 1421 5.186215 TCATCTCATGAAACAAACATGGCAT 59.814 36.000 0.00 0.00 43.38 4.40
1616 1619 3.310193 GGTTAGGTGATCTAGCCTCCTT 58.690 50.000 0.00 0.00 43.48 3.36
1710 1713 9.521841 TCATCCTTGTAATTTGTTTACCATGTA 57.478 29.630 0.00 0.00 39.63 2.29
1833 1836 0.179032 TGAAGTGCGTCACAACCCAT 60.179 50.000 11.58 0.00 36.74 4.00
1844 1847 6.139169 GCTCATCGTTTAATAAATGAAGTGCG 59.861 38.462 16.15 7.43 39.63 5.34
1869 1872 3.896648 AATAACACTTGTCAAGCACCG 57.103 42.857 12.66 1.88 0.00 4.94
1989 2191 5.011125 CCTCTTAGGCACTAGCATAGCTAAA 59.989 44.000 0.00 0.00 44.39 1.85
1990 2192 4.524714 CCTCTTAGGCACTAGCATAGCTAA 59.475 45.833 0.00 0.00 44.39 3.09
2014 2216 6.425114 CACTCTGAATAATAGGTTTCATCCCG 59.575 42.308 0.00 0.00 31.83 5.14
2047 2249 9.593134 AAAAGTATACATTTTTGTGTGAGCAAA 57.407 25.926 5.50 0.00 36.67 3.68
2084 2292 4.764823 CACCTGGAGGCTTTTGTTACATAA 59.235 41.667 0.00 0.00 39.32 1.90
2116 2324 0.234106 CAGAGCTGTCGCACAAAGTG 59.766 55.000 0.00 0.00 39.10 3.16
2172 2380 2.418471 CCCAGCTACTCTCTGCAGAAAG 60.418 54.545 18.85 17.20 0.00 2.62
2340 2548 1.208776 ACCTTGGCGGTAACCATACTC 59.791 52.381 0.00 0.00 46.73 2.59
2404 2612 2.901839 AGCAAACCAGATTCCTTGCAAT 59.098 40.909 0.00 0.00 45.22 3.56
2422 2630 4.422073 TCTCAGTTGAAAGGAGAAAGCA 57.578 40.909 0.00 0.00 34.91 3.91
2521 2740 9.971922 GCTTTAACAATGCCATCTTAAGATATT 57.028 29.630 17.53 11.17 32.63 1.28
2522 2741 9.135189 TGCTTTAACAATGCCATCTTAAGATAT 57.865 29.630 17.53 5.59 32.63 1.63
2523 2742 8.518430 TGCTTTAACAATGCCATCTTAAGATA 57.482 30.769 17.53 3.28 32.63 1.98
2524 2743 7.408756 TGCTTTAACAATGCCATCTTAAGAT 57.591 32.000 12.37 12.37 34.56 2.40
2525 2744 6.832520 TGCTTTAACAATGCCATCTTAAGA 57.167 33.333 7.82 7.82 0.00 2.10
2526 2745 9.754382 AATATGCTTTAACAATGCCATCTTAAG 57.246 29.630 0.00 0.00 0.00 1.85
2543 2762 9.646522 AGACCCATGAACTAATTAATATGCTTT 57.353 29.630 0.00 0.00 0.00 3.51
2553 2772 9.927081 AGATGATTTTAGACCCATGAACTAATT 57.073 29.630 0.00 0.00 0.00 1.40
2556 2775 8.651389 CCTAGATGATTTTAGACCCATGAACTA 58.349 37.037 0.00 0.00 0.00 2.24
2557 2776 7.420680 CCCTAGATGATTTTAGACCCATGAACT 60.421 40.741 0.00 0.00 0.00 3.01
2558 2777 6.712547 CCCTAGATGATTTTAGACCCATGAAC 59.287 42.308 0.00 0.00 0.00 3.18
2559 2778 6.691491 GCCCTAGATGATTTTAGACCCATGAA 60.691 42.308 0.00 0.00 0.00 2.57
2560 2779 5.221925 GCCCTAGATGATTTTAGACCCATGA 60.222 44.000 0.00 0.00 0.00 3.07
2561 2780 5.006386 GCCCTAGATGATTTTAGACCCATG 58.994 45.833 0.00 0.00 0.00 3.66
2562 2781 4.916424 AGCCCTAGATGATTTTAGACCCAT 59.084 41.667 0.00 0.00 0.00 4.00
2563 2782 4.103153 CAGCCCTAGATGATTTTAGACCCA 59.897 45.833 0.00 0.00 0.00 4.51
2564 2783 4.103311 ACAGCCCTAGATGATTTTAGACCC 59.897 45.833 0.00 0.00 32.31 4.46
2565 2784 5.297569 ACAGCCCTAGATGATTTTAGACC 57.702 43.478 0.00 0.00 32.31 3.85
2566 2785 8.910351 ATTAACAGCCCTAGATGATTTTAGAC 57.090 34.615 0.00 0.00 32.31 2.59
2567 2786 8.938883 AGATTAACAGCCCTAGATGATTTTAGA 58.061 33.333 0.00 0.00 32.31 2.10
2568 2787 9.566432 AAGATTAACAGCCCTAGATGATTTTAG 57.434 33.333 0.00 0.00 32.31 1.85
2569 2788 9.920946 AAAGATTAACAGCCCTAGATGATTTTA 57.079 29.630 0.00 0.00 32.31 1.52
2570 2789 8.689972 CAAAGATTAACAGCCCTAGATGATTTT 58.310 33.333 0.00 0.00 32.31 1.82
2571 2790 7.201857 GCAAAGATTAACAGCCCTAGATGATTT 60.202 37.037 0.00 0.00 32.31 2.17
2572 2791 6.264067 GCAAAGATTAACAGCCCTAGATGATT 59.736 38.462 0.00 0.00 32.31 2.57
2573 2792 5.767168 GCAAAGATTAACAGCCCTAGATGAT 59.233 40.000 0.00 0.00 32.31 2.45
2574 2793 5.126067 GCAAAGATTAACAGCCCTAGATGA 58.874 41.667 0.00 0.00 32.31 2.92
2575 2794 4.883585 TGCAAAGATTAACAGCCCTAGATG 59.116 41.667 0.00 0.00 34.82 2.90
2576 2795 4.884164 GTGCAAAGATTAACAGCCCTAGAT 59.116 41.667 0.00 0.00 0.00 1.98
2577 2796 4.261801 GTGCAAAGATTAACAGCCCTAGA 58.738 43.478 0.00 0.00 0.00 2.43
2578 2797 3.063997 CGTGCAAAGATTAACAGCCCTAG 59.936 47.826 0.00 0.00 0.00 3.02
2579 2798 3.006940 CGTGCAAAGATTAACAGCCCTA 58.993 45.455 0.00 0.00 0.00 3.53
2580 2799 1.812571 CGTGCAAAGATTAACAGCCCT 59.187 47.619 0.00 0.00 0.00 5.19
2581 2800 1.135402 CCGTGCAAAGATTAACAGCCC 60.135 52.381 0.00 0.00 0.00 5.19
2582 2801 1.539827 ACCGTGCAAAGATTAACAGCC 59.460 47.619 0.00 0.00 0.00 4.85
2583 2802 2.989422 ACCGTGCAAAGATTAACAGC 57.011 45.000 0.00 0.00 0.00 4.40
2584 2803 6.435428 ACTTTTACCGTGCAAAGATTAACAG 58.565 36.000 10.52 0.61 34.60 3.16
2585 2804 6.380095 ACTTTTACCGTGCAAAGATTAACA 57.620 33.333 10.52 0.00 34.60 2.41
2586 2805 7.324375 GGTAACTTTTACCGTGCAAAGATTAAC 59.676 37.037 10.52 6.14 34.60 2.01
2587 2806 7.013083 TGGTAACTTTTACCGTGCAAAGATTAA 59.987 33.333 9.93 0.00 40.39 1.40
2588 2807 6.485984 TGGTAACTTTTACCGTGCAAAGATTA 59.514 34.615 9.93 4.99 40.39 1.75
2589 2808 5.299782 TGGTAACTTTTACCGTGCAAAGATT 59.700 36.000 9.93 5.64 40.39 2.40
2590 2809 4.822896 TGGTAACTTTTACCGTGCAAAGAT 59.177 37.500 9.93 3.68 40.39 2.40
2591 2810 4.197750 TGGTAACTTTTACCGTGCAAAGA 58.802 39.130 9.93 0.00 40.39 2.52
2592 2811 4.555348 TGGTAACTTTTACCGTGCAAAG 57.445 40.909 9.93 0.00 40.39 2.77
2593 2812 5.517322 AATGGTAACTTTTACCGTGCAAA 57.483 34.783 10.01 0.00 40.39 3.68
2594 2813 5.517322 AAATGGTAACTTTTACCGTGCAA 57.483 34.783 10.01 0.00 41.66 4.08
2595 2814 5.517322 AAAATGGTAACTTTTACCGTGCA 57.483 34.783 10.01 0.00 42.54 4.57
2596 2815 9.623350 TTTATAAAATGGTAACTTTTACCGTGC 57.377 29.630 10.01 0.00 42.54 5.34
2714 2933 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2715 2934 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2716 2935 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2717 2936 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2718 2937 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2719 2938 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2720 2939 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2721 2940 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2722 2941 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2723 2942 6.432783 ACATTTTGATGACAAGTATTTCCGGA 59.567 34.615 0.00 0.00 37.32 5.14
2724 2943 6.620678 ACATTTTGATGACAAGTATTTCCGG 58.379 36.000 0.00 0.00 37.32 5.14
2725 2944 8.233868 TGTACATTTTGATGACAAGTATTTCCG 58.766 33.333 0.00 0.00 37.32 4.30
2726 2945 9.906660 TTGTACATTTTGATGACAAGTATTTCC 57.093 29.630 0.00 0.00 37.32 3.13
2731 2950 9.743057 CCTTTTTGTACATTTTGATGACAAGTA 57.257 29.630 0.00 0.00 37.32 2.24
2732 2951 7.710475 CCCTTTTTGTACATTTTGATGACAAGT 59.290 33.333 0.00 0.00 37.32 3.16
2733 2952 7.925483 TCCCTTTTTGTACATTTTGATGACAAG 59.075 33.333 0.00 0.00 37.32 3.16
2734 2953 7.786030 TCCCTTTTTGTACATTTTGATGACAA 58.214 30.769 0.00 0.00 0.00 3.18
2735 2954 7.353414 TCCCTTTTTGTACATTTTGATGACA 57.647 32.000 0.00 0.00 0.00 3.58
2736 2955 7.872483 ACATCCCTTTTTGTACATTTTGATGAC 59.128 33.333 19.03 0.00 32.39 3.06
2737 2956 7.961351 ACATCCCTTTTTGTACATTTTGATGA 58.039 30.769 19.03 5.29 32.39 2.92
2738 2957 9.874205 ATACATCCCTTTTTGTACATTTTGATG 57.126 29.630 0.00 7.57 31.55 3.07
2740 2959 9.308000 AGATACATCCCTTTTTGTACATTTTGA 57.692 29.630 0.00 0.00 31.55 2.69
2745 2964 9.614792 GTTCTAGATACATCCCTTTTTGTACAT 57.385 33.333 0.00 0.00 31.55 2.29
2746 2965 8.822805 AGTTCTAGATACATCCCTTTTTGTACA 58.177 33.333 0.00 0.00 31.55 2.90
2768 2987 9.623350 GGGACGTATCTAGATGTATTTTAGTTC 57.377 37.037 15.79 2.83 0.00 3.01
2769 2988 8.583296 GGGGACGTATCTAGATGTATTTTAGTT 58.417 37.037 15.79 0.00 0.00 2.24
2770 2989 7.949006 AGGGGACGTATCTAGATGTATTTTAGT 59.051 37.037 15.79 3.72 0.00 2.24
2771 2990 8.350852 AGGGGACGTATCTAGATGTATTTTAG 57.649 38.462 15.79 0.78 0.00 1.85
2772 2991 8.716674 AAGGGGACGTATCTAGATGTATTTTA 57.283 34.615 15.79 0.00 0.00 1.52
2773 2992 7.613551 AAGGGGACGTATCTAGATGTATTTT 57.386 36.000 15.79 0.00 0.00 1.82
2774 2993 7.613551 AAAGGGGACGTATCTAGATGTATTT 57.386 36.000 15.79 3.36 0.00 1.40
2775 2994 7.613551 AAAAGGGGACGTATCTAGATGTATT 57.386 36.000 15.79 0.00 0.00 1.89
2776 2995 8.896722 ATAAAAGGGGACGTATCTAGATGTAT 57.103 34.615 15.79 0.00 0.00 2.29
2777 2996 8.716674 AATAAAAGGGGACGTATCTAGATGTA 57.283 34.615 15.79 0.00 0.00 2.29
2778 2997 7.613551 AATAAAAGGGGACGTATCTAGATGT 57.386 36.000 15.79 5.44 0.00 3.06
2784 3003 9.689501 TCAAAATAAATAAAAGGGGACGTATCT 57.310 29.630 0.00 0.00 0.00 1.98
2787 3006 9.463902 TCATCAAAATAAATAAAAGGGGACGTA 57.536 29.630 0.00 0.00 0.00 3.57
2788 3007 8.248253 GTCATCAAAATAAATAAAAGGGGACGT 58.752 33.333 0.00 0.00 0.00 4.34
2789 3008 8.247562 TGTCATCAAAATAAATAAAAGGGGACG 58.752 33.333 0.00 0.00 0.00 4.79
2790 3009 9.936759 TTGTCATCAAAATAAATAAAAGGGGAC 57.063 29.630 0.00 0.00 0.00 4.46
2792 3011 9.942850 ACTTGTCATCAAAATAAATAAAAGGGG 57.057 29.630 0.00 0.00 32.87 4.79
2802 3021 9.834628 GTCCGAAAATACTTGTCATCAAAATAA 57.165 29.630 0.00 0.00 32.87 1.40
2803 3022 8.172484 CGTCCGAAAATACTTGTCATCAAAATA 58.828 33.333 0.00 0.00 32.87 1.40
2804 3023 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2805 3024 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2806 3025 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2807 3026 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2808 3027 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2809 3028 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2810 3029 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2811 3030 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2812 3031 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2813 3032 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2814 3033 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2815 3034 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2816 3035 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2817 3036 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2818 3037 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2819 3038 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2820 3039 1.753073 GATACTCCCTCCGTCCGAAAA 59.247 52.381 0.00 0.00 0.00 2.29
2821 3040 1.064166 AGATACTCCCTCCGTCCGAAA 60.064 52.381 0.00 0.00 0.00 3.46
2822 3041 0.549950 AGATACTCCCTCCGTCCGAA 59.450 55.000 0.00 0.00 0.00 4.30
2823 3042 0.549950 AAGATACTCCCTCCGTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
2824 3043 1.878734 GTAAGATACTCCCTCCGTCCG 59.121 57.143 0.00 0.00 0.00 4.79
2825 3044 2.941480 TGTAAGATACTCCCTCCGTCC 58.059 52.381 0.00 0.00 0.00 4.79
2826 3045 4.142790 TGATGTAAGATACTCCCTCCGTC 58.857 47.826 0.00 0.00 0.00 4.79
2827 3046 4.180377 TGATGTAAGATACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
2828 3047 4.585162 ACTTGATGTAAGATACTCCCTCCG 59.415 45.833 0.00 0.00 39.76 4.63
2829 3048 7.784470 ATACTTGATGTAAGATACTCCCTCC 57.216 40.000 0.00 0.00 39.76 4.30
2830 3049 9.482627 CAAATACTTGATGTAAGATACTCCCTC 57.517 37.037 0.00 0.00 39.76 4.30
2831 3050 9.213777 TCAAATACTTGATGTAAGATACTCCCT 57.786 33.333 0.00 0.00 39.76 4.20
2832 3051 9.262358 GTCAAATACTTGATGTAAGATACTCCC 57.738 37.037 0.00 0.00 43.39 4.30
2847 3066 6.238484 GGCCATGCTACTTAGTCAAATACTTG 60.238 42.308 0.00 0.00 39.80 3.16
2899 3118 8.692110 TGCATATTCAGCAATTAAACAAGAAG 57.308 30.769 0.00 0.00 39.39 2.85
2923 3142 5.529800 TGACAAGATGAGCCATATGTCAATG 59.470 40.000 21.03 4.36 42.39 2.82
2924 3143 5.530171 GTGACAAGATGAGCCATATGTCAAT 59.470 40.000 22.92 0.00 44.49 2.57
2925 3144 4.877823 GTGACAAGATGAGCCATATGTCAA 59.122 41.667 22.92 13.34 44.49 3.18
3318 3537 2.047274 ATGCGAACCACTCCACCG 60.047 61.111 0.00 0.00 0.00 4.94
3321 3540 2.359850 GCCATGCGAACCACTCCA 60.360 61.111 0.00 0.00 0.00 3.86
3411 3630 6.035327 GCTCAACAATGGAAAGCAAATGATAC 59.965 38.462 0.00 0.00 33.21 2.24
3874 4093 5.450453 TCTCGGAGGAGTTGAAATAGAGAT 58.550 41.667 4.96 0.00 41.26 2.75
4023 4242 1.410153 CACAAACCAAGCTTCTGCCTT 59.590 47.619 0.00 0.00 40.80 4.35
4043 4262 4.532834 AGAAGGATCTGACTCTGTCCTAC 58.467 47.826 0.00 0.00 40.10 3.18
4100 4319 0.737219 GCATCGCCTTGCTGAATTCT 59.263 50.000 7.05 0.00 39.57 2.40
4126 4345 6.640518 TCCCCGCACTATCTGATAAAATATC 58.359 40.000 0.00 0.00 0.00 1.63
4130 4349 3.071023 CCTCCCCGCACTATCTGATAAAA 59.929 47.826 0.00 0.00 0.00 1.52
4134 4353 0.105453 ACCTCCCCGCACTATCTGAT 60.105 55.000 0.00 0.00 0.00 2.90
4145 4364 2.292267 CAATTTCATGAGACCTCCCCG 58.708 52.381 0.00 0.00 0.00 5.73
4205 4424 0.397941 CACTGGAGGCTCCTTGTGAA 59.602 55.000 35.07 17.98 40.99 3.18
4228 4447 2.985282 TTGCAAAGGCTCTGCGGG 60.985 61.111 8.50 0.00 42.97 6.13
4630 4849 7.286316 ACTGATAAATGGCTTCCTTTCATTAGG 59.714 37.037 0.00 0.00 36.59 2.69
4736 4955 3.629398 GGATGGGTCAACAGCATCTTTAG 59.371 47.826 0.00 0.00 0.00 1.85
4753 4972 1.626356 TTCCCTTCGGAGCAGGATGG 61.626 60.000 0.00 0.00 40.10 3.51
4795 5014 0.819259 TCACCAGCAGCCAACTTCAC 60.819 55.000 0.00 0.00 0.00 3.18
4796 5015 0.111061 ATCACCAGCAGCCAACTTCA 59.889 50.000 0.00 0.00 0.00 3.02
4797 5016 2.113860 TATCACCAGCAGCCAACTTC 57.886 50.000 0.00 0.00 0.00 3.01
4902 5121 5.747342 AGACTACCAAAAAGTACCACACAA 58.253 37.500 0.00 0.00 0.00 3.33
4909 5128 8.064336 TCAGGATAGAGACTACCAAAAAGTAC 57.936 38.462 0.00 0.00 0.00 2.73
5025 5244 4.209080 GCAAGTATTTCTTTTGGCACACAC 59.791 41.667 0.00 0.00 33.24 3.82
5027 5246 3.740832 GGCAAGTATTTCTTTTGGCACAC 59.259 43.478 5.31 0.00 44.12 3.82
5065 5381 9.079833 CATGTTTGGCAAATAAAGATACAGAAG 57.920 33.333 16.74 0.00 0.00 2.85
5088 5404 6.146601 TCCAAATTACACCATACATGCATG 57.853 37.500 25.09 25.09 0.00 4.06
5089 5405 6.550481 TGATCCAAATTACACCATACATGCAT 59.450 34.615 0.00 0.00 0.00 3.96
5090 5406 5.890419 TGATCCAAATTACACCATACATGCA 59.110 36.000 0.00 0.00 0.00 3.96
5091 5407 6.389830 TGATCCAAATTACACCATACATGC 57.610 37.500 0.00 0.00 0.00 4.06
5116 5432 8.650143 TGTTAGTGATGCATACATAGATAGGA 57.350 34.615 0.00 0.00 36.35 2.94
5127 5443 5.017294 TGATCCGTTGTTAGTGATGCATA 57.983 39.130 0.00 0.00 0.00 3.14
5143 5459 3.531934 TGCATAGATAGGCATGATCCG 57.468 47.619 0.00 0.00 38.15 4.18
5161 5477 3.574284 TGCAACCATTGTTAGTGATGC 57.426 42.857 0.00 0.00 32.09 3.91
5260 5576 4.033776 TCCTTTGCCGCCCAGGAG 62.034 66.667 3.89 0.00 45.00 3.69
5353 5691 1.384191 GGGTTGGGCAGGAACAGAT 59.616 57.895 0.00 0.00 0.00 2.90
5372 5714 1.599071 CGACTGCTGAGCTAGAGAGAG 59.401 57.143 5.83 0.00 0.00 3.20
5373 5715 1.208293 TCGACTGCTGAGCTAGAGAGA 59.792 52.381 5.83 0.00 0.00 3.10
5431 5781 1.377202 CGGTGGACAAGATGGTGGG 60.377 63.158 0.00 0.00 0.00 4.61
5432 5782 1.377202 CCGGTGGACAAGATGGTGG 60.377 63.158 0.00 0.00 0.00 4.61
5433 5783 0.955428 CACCGGTGGACAAGATGGTG 60.955 60.000 27.57 0.00 40.68 4.17
5434 5784 1.374947 CACCGGTGGACAAGATGGT 59.625 57.895 27.57 0.00 0.00 3.55
5497 5847 2.627515 ACATGATGGACTCGAATGGG 57.372 50.000 0.00 0.00 0.00 4.00
5542 5896 4.717280 AGATTCATCGGAGTTCCTTAGGTT 59.283 41.667 0.00 0.00 0.00 3.50
5560 5914 1.944676 CGCGGCGACACCTAGATTC 60.945 63.158 19.16 0.00 35.61 2.52
5713 6070 1.225745 GTATGTTCAGCACACGCGC 60.226 57.895 5.73 0.00 45.49 6.86
5766 6123 2.351276 GTCACAGCGGGGGACATT 59.649 61.111 8.68 0.00 0.00 2.71
5776 6133 1.870055 TTCCTACGTCCCGTCACAGC 61.870 60.000 0.00 0.00 41.54 4.40
5777 6134 0.170561 CTTCCTACGTCCCGTCACAG 59.829 60.000 0.00 0.00 41.54 3.66
5780 6137 1.679977 CCCTTCCTACGTCCCGTCA 60.680 63.158 0.00 0.00 41.54 4.35
5782 6139 2.234246 ATCCCCTTCCTACGTCCCGT 62.234 60.000 0.00 0.00 44.35 5.28
5785 6142 4.701651 AAATTATCCCCTTCCTACGTCC 57.298 45.455 0.00 0.00 0.00 4.79
5786 6143 5.677567 TCAAAATTATCCCCTTCCTACGTC 58.322 41.667 0.00 0.00 0.00 4.34
5787 6144 5.703730 TCAAAATTATCCCCTTCCTACGT 57.296 39.130 0.00 0.00 0.00 3.57
5789 6146 7.290813 ACTGATCAAAATTATCCCCTTCCTAC 58.709 38.462 0.00 0.00 0.00 3.18
5791 6148 6.347061 ACTGATCAAAATTATCCCCTTCCT 57.653 37.500 0.00 0.00 0.00 3.36
5792 6149 7.093333 ACAAACTGATCAAAATTATCCCCTTCC 60.093 37.037 0.00 0.00 0.00 3.46
5793 6150 7.840931 ACAAACTGATCAAAATTATCCCCTTC 58.159 34.615 0.00 0.00 0.00 3.46
5794 6151 7.675619 AGACAAACTGATCAAAATTATCCCCTT 59.324 33.333 0.00 0.00 0.00 3.95
5795 6152 7.184862 AGACAAACTGATCAAAATTATCCCCT 58.815 34.615 0.00 0.00 0.00 4.79
5796 6153 7.410120 AGACAAACTGATCAAAATTATCCCC 57.590 36.000 0.00 0.00 0.00 4.81
5804 6161 9.897744 GATGTGAATTAGACAAACTGATCAAAA 57.102 29.630 0.00 0.00 0.00 2.44
5835 6192 9.295825 AGGTTAGATGTGACATCATTAAAAACA 57.704 29.630 25.68 0.00 0.00 2.83
5837 6194 8.956426 GGAGGTTAGATGTGACATCATTAAAAA 58.044 33.333 25.68 8.41 0.00 1.94
5838 6195 8.328758 AGGAGGTTAGATGTGACATCATTAAAA 58.671 33.333 25.68 9.96 0.00 1.52
5839 6196 7.861629 AGGAGGTTAGATGTGACATCATTAAA 58.138 34.615 25.68 12.15 0.00 1.52
5840 6197 7.437713 AGGAGGTTAGATGTGACATCATTAA 57.562 36.000 25.68 14.23 0.00 1.40
5841 6198 8.547481 TTAGGAGGTTAGATGTGACATCATTA 57.453 34.615 25.68 9.13 0.00 1.90
5842 6199 5.965033 AGGAGGTTAGATGTGACATCATT 57.035 39.130 25.68 10.11 0.00 2.57
5843 6200 7.437713 TTTAGGAGGTTAGATGTGACATCAT 57.562 36.000 25.68 13.88 0.00 2.45
5844 6201 6.867519 TTTAGGAGGTTAGATGTGACATCA 57.132 37.500 25.68 10.40 0.00 3.07
5847 6204 9.444600 GTTATTTTTAGGAGGTTAGATGTGACA 57.555 33.333 0.00 0.00 0.00 3.58
5851 6208 9.813446 CGTAGTTATTTTTAGGAGGTTAGATGT 57.187 33.333 0.00 0.00 0.00 3.06
5854 6211 7.839907 TGCGTAGTTATTTTTAGGAGGTTAGA 58.160 34.615 0.00 0.00 0.00 2.10
5855 6212 7.254353 GCTGCGTAGTTATTTTTAGGAGGTTAG 60.254 40.741 1.53 0.00 0.00 2.34
5856 6213 6.536224 GCTGCGTAGTTATTTTTAGGAGGTTA 59.464 38.462 1.53 0.00 0.00 2.85
5857 6214 5.353400 GCTGCGTAGTTATTTTTAGGAGGTT 59.647 40.000 1.53 0.00 0.00 3.50
5858 6215 4.874396 GCTGCGTAGTTATTTTTAGGAGGT 59.126 41.667 1.53 0.00 0.00 3.85
5859 6216 4.873827 TGCTGCGTAGTTATTTTTAGGAGG 59.126 41.667 1.53 0.00 0.00 4.30
5860 6217 6.128391 TGTTGCTGCGTAGTTATTTTTAGGAG 60.128 38.462 1.53 0.00 0.00 3.69
5861 6218 5.701750 TGTTGCTGCGTAGTTATTTTTAGGA 59.298 36.000 1.53 0.00 0.00 2.94
5862 6219 5.933790 TGTTGCTGCGTAGTTATTTTTAGG 58.066 37.500 1.53 0.00 0.00 2.69
5864 6221 7.192148 TCTTGTTGCTGCGTAGTTATTTTTA 57.808 32.000 1.53 0.00 0.00 1.52
5865 6222 6.067263 TCTTGTTGCTGCGTAGTTATTTTT 57.933 33.333 1.53 0.00 0.00 1.94
5866 6223 5.682943 TCTTGTTGCTGCGTAGTTATTTT 57.317 34.783 1.53 0.00 0.00 1.82
5867 6224 5.682943 TTCTTGTTGCTGCGTAGTTATTT 57.317 34.783 1.53 0.00 0.00 1.40
5868 6225 5.682943 TTTCTTGTTGCTGCGTAGTTATT 57.317 34.783 1.53 0.00 0.00 1.40
5869 6226 5.880054 ATTTCTTGTTGCTGCGTAGTTAT 57.120 34.783 1.53 0.00 0.00 1.89
5870 6227 6.788684 TTATTTCTTGTTGCTGCGTAGTTA 57.211 33.333 1.53 0.00 0.00 2.24
5871 6228 5.682943 TTATTTCTTGTTGCTGCGTAGTT 57.317 34.783 1.53 0.00 0.00 2.24
5872 6229 5.682943 TTTATTTCTTGTTGCTGCGTAGT 57.317 34.783 1.53 0.00 0.00 2.73
5910 6267 7.448469 AGCACTATGTTTGTGGTCTATCTTTTT 59.552 33.333 0.00 0.00 41.52 1.94
5911 6268 6.942576 AGCACTATGTTTGTGGTCTATCTTTT 59.057 34.615 0.00 0.00 41.52 2.27
5912 6269 6.476378 AGCACTATGTTTGTGGTCTATCTTT 58.524 36.000 0.00 0.00 41.52 2.52
5913 6270 6.054860 AGCACTATGTTTGTGGTCTATCTT 57.945 37.500 0.00 0.00 41.52 2.40
5914 6271 5.683876 AGCACTATGTTTGTGGTCTATCT 57.316 39.130 0.00 0.00 41.52 1.98
5915 6272 7.710907 TGATAAGCACTATGTTTGTGGTCTATC 59.289 37.037 0.00 2.66 44.03 2.08
5916 6273 7.564793 TGATAAGCACTATGTTTGTGGTCTAT 58.435 34.615 0.00 0.00 44.03 1.98
5917 6274 6.941857 TGATAAGCACTATGTTTGTGGTCTA 58.058 36.000 0.00 0.00 44.03 2.59
5918 6275 5.804639 TGATAAGCACTATGTTTGTGGTCT 58.195 37.500 0.00 0.00 44.03 3.85
5922 6279 6.500684 AACCTGATAAGCACTATGTTTGTG 57.499 37.500 0.00 0.00 38.36 3.33
5923 6280 7.620880 TCTAACCTGATAAGCACTATGTTTGT 58.379 34.615 0.00 0.00 0.00 2.83
5925 6282 8.267894 ACATCTAACCTGATAAGCACTATGTTT 58.732 33.333 0.00 0.00 0.00 2.83
5926 6283 7.712639 CACATCTAACCTGATAAGCACTATGTT 59.287 37.037 0.00 0.00 0.00 2.71
5927 6284 7.069950 TCACATCTAACCTGATAAGCACTATGT 59.930 37.037 0.00 0.00 0.00 2.29
5929 6286 7.069950 TGTCACATCTAACCTGATAAGCACTAT 59.930 37.037 0.00 0.00 0.00 2.12
5930 6287 6.379988 TGTCACATCTAACCTGATAAGCACTA 59.620 38.462 0.00 0.00 0.00 2.74
5931 6288 5.187772 TGTCACATCTAACCTGATAAGCACT 59.812 40.000 0.00 0.00 0.00 4.40
5932 6289 5.419542 TGTCACATCTAACCTGATAAGCAC 58.580 41.667 0.00 0.00 0.00 4.40
5933 6290 5.675684 TGTCACATCTAACCTGATAAGCA 57.324 39.130 0.00 0.00 0.00 3.91
5934 6291 7.928706 AGTTATGTCACATCTAACCTGATAAGC 59.071 37.037 0.00 0.00 0.00 3.09
5938 6295 8.928448 ACATAGTTATGTCACATCTAACCTGAT 58.072 33.333 0.00 0.00 42.96 2.90
5939 6296 8.306313 ACATAGTTATGTCACATCTAACCTGA 57.694 34.615 0.00 0.00 42.96 3.86
5968 6325 5.381757 GGTCTGTCTAGGACACATCTAGAT 58.618 45.833 0.00 0.00 43.25 1.98
5971 6328 3.268595 TGGGTCTGTCTAGGACACATCTA 59.731 47.826 0.00 0.00 41.46 1.98
5973 6330 2.457598 TGGGTCTGTCTAGGACACATC 58.542 52.381 0.00 0.00 41.46 3.06
5974 6331 2.623418 TGGGTCTGTCTAGGACACAT 57.377 50.000 0.00 0.00 41.46 3.21
5976 6333 3.983044 AATTGGGTCTGTCTAGGACAC 57.017 47.619 0.00 0.00 37.67 3.67
5977 6334 4.349636 TCAAAATTGGGTCTGTCTAGGACA 59.650 41.667 0.43 0.43 40.50 4.02
5979 6336 5.779241 ATCAAAATTGGGTCTGTCTAGGA 57.221 39.130 0.00 0.00 0.00 2.94
5981 6338 6.543831 CCCTAATCAAAATTGGGTCTGTCTAG 59.456 42.308 0.00 0.00 40.89 2.43
5982 6339 6.423182 CCCTAATCAAAATTGGGTCTGTCTA 58.577 40.000 0.00 0.00 40.89 2.59
5983 6340 5.264395 CCCTAATCAAAATTGGGTCTGTCT 58.736 41.667 0.00 0.00 40.89 3.41
5984 6341 4.402474 CCCCTAATCAAAATTGGGTCTGTC 59.598 45.833 0.00 0.00 40.89 3.51
5986 6343 4.352893 ACCCCTAATCAAAATTGGGTCTG 58.647 43.478 0.00 0.00 40.89 3.51
5987 6344 4.610333 GACCCCTAATCAAAATTGGGTCT 58.390 43.478 16.35 0.00 45.87 3.85
5989 6346 3.339742 AGGACCCCTAATCAAAATTGGGT 59.660 43.478 0.00 0.00 41.68 4.51
5990 6347 3.960755 GAGGACCCCTAATCAAAATTGGG 59.039 47.826 0.00 0.00 41.86 4.12
5991 6348 3.632145 CGAGGACCCCTAATCAAAATTGG 59.368 47.826 0.00 0.00 31.76 3.16
5992 6349 4.523083 TCGAGGACCCCTAATCAAAATTG 58.477 43.478 0.00 0.00 31.76 2.32
5993 6350 4.385310 CCTCGAGGACCCCTAATCAAAATT 60.385 45.833 28.21 0.00 37.39 1.82
5994 6351 3.136626 CCTCGAGGACCCCTAATCAAAAT 59.863 47.826 28.21 0.00 37.39 1.82
5995 6352 2.504175 CCTCGAGGACCCCTAATCAAAA 59.496 50.000 28.21 0.00 37.39 2.44
5997 6354 1.289830 TCCTCGAGGACCCCTAATCAA 59.710 52.381 30.49 3.25 39.78 2.57
5998 6355 0.931468 TCCTCGAGGACCCCTAATCA 59.069 55.000 30.49 3.84 39.78 2.57
5999 6356 3.844161 TCCTCGAGGACCCCTAATC 57.156 57.895 30.49 0.00 39.78 1.75
6012 6369 4.180946 CCGCTCCTCGTGTCCTCG 62.181 72.222 0.00 0.00 36.19 4.63
6014 6371 3.063084 GACCGCTCCTCGTGTCCT 61.063 66.667 0.00 0.00 34.50 3.85
6015 6372 4.477975 CGACCGCTCCTCGTGTCC 62.478 72.222 0.00 0.00 36.02 4.02
6016 6373 4.477975 CCGACCGCTCCTCGTGTC 62.478 72.222 0.00 0.00 36.05 3.67
6034 6391 2.514824 GGCCGGATGTCTGGAAGC 60.515 66.667 5.05 0.00 45.36 3.86
6037 7679 3.770040 CACGGCCGGATGTCTGGA 61.770 66.667 31.76 0.00 45.36 3.86
6110 7753 1.135972 CACTTGGACTTGGAAATCGCG 60.136 52.381 0.00 0.00 0.00 5.87
6122 7765 0.106708 TGACTCACTGCCACTTGGAC 59.893 55.000 0.00 0.00 37.39 4.02
6145 7788 2.638363 GGTGGGTGGATAGGAATAGGAC 59.362 54.545 0.00 0.00 0.00 3.85
6182 7825 7.011482 ACTGTTCAATCTTGTGTAGTCAAAGTC 59.989 37.037 0.00 0.00 0.00 3.01
6183 7826 6.823689 ACTGTTCAATCTTGTGTAGTCAAAGT 59.176 34.615 0.00 0.00 0.00 2.66
6184 7827 7.251704 ACTGTTCAATCTTGTGTAGTCAAAG 57.748 36.000 0.00 0.00 0.00 2.77
6185 7828 7.624360 AACTGTTCAATCTTGTGTAGTCAAA 57.376 32.000 0.00 0.00 0.00 2.69
6224 7867 1.065926 TGCTTGTGGTATCTGAGCAGG 60.066 52.381 0.00 0.00 38.33 4.85
6254 7897 1.028905 TTCTGTTGAGCAAAACCCCG 58.971 50.000 0.00 0.00 0.00 5.73
6256 7899 1.754226 TGGTTCTGTTGAGCAAAACCC 59.246 47.619 2.01 0.00 0.00 4.11
6257 7900 3.518634 TTGGTTCTGTTGAGCAAAACC 57.481 42.857 0.00 0.00 32.19 3.27
6259 7902 3.740764 GCCATTGGTTCTGTTGAGCAAAA 60.741 43.478 4.26 0.00 37.93 2.44
6281 7924 0.029300 CATGTTTGGAATAGGCGGCG 59.971 55.000 0.51 0.51 0.00 6.46
6288 7932 5.765510 AGGGAGTAATGCATGTTTGGAATA 58.234 37.500 0.00 0.00 0.00 1.75
6292 7936 3.624777 AGAGGGAGTAATGCATGTTTGG 58.375 45.455 0.00 0.00 0.00 3.28
6294 7938 6.064717 GGAATAGAGGGAGTAATGCATGTTT 58.935 40.000 0.00 0.00 0.00 2.83
6306 7950 4.656112 ACCTTACATGTGGAATAGAGGGAG 59.344 45.833 9.11 0.00 0.00 4.30
6309 7953 4.130118 GCACCTTACATGTGGAATAGAGG 58.870 47.826 9.11 6.71 34.27 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.