Multiple sequence alignment - TraesCS7A01G253500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G253500 chr7A 100.000 3899 0 0 1 3899 239029890 239033788 0.000000e+00 7201.0
1 TraesCS7A01G253500 chr7A 89.041 73 3 3 3270 3340 234912095 234912164 6.940000e-13 86.1
2 TraesCS7A01G253500 chr7B 89.471 3343 218 58 522 3785 198932247 198935534 0.000000e+00 4100.0
3 TraesCS7A01G253500 chr7B 83.117 77 7 4 3265 3340 118646521 118646592 9.040000e-07 65.8
4 TraesCS7A01G253500 chr7D 94.723 2653 89 23 629 3238 227166475 227169119 0.000000e+00 4076.0
5 TraesCS7A01G253500 chr7D 84.416 77 6 4 3265 3340 351293740 351293811 1.940000e-08 71.3
6 TraesCS7A01G253500 chr7D 88.679 53 5 1 511 563 172265578 172265629 3.250000e-06 63.9
7 TraesCS7A01G253500 chr6D 92.885 506 36 0 1 506 61762734 61762229 0.000000e+00 736.0
8 TraesCS7A01G253500 chr1B 92.126 508 40 0 1 508 144232082 144232589 0.000000e+00 717.0
9 TraesCS7A01G253500 chr1B 91.929 508 37 1 1 508 144126984 144127487 0.000000e+00 708.0
10 TraesCS7A01G253500 chr1B 100.000 30 0 0 104 133 395311762 395311791 5.440000e-04 56.5
11 TraesCS7A01G253500 chr3A 90.215 511 50 0 1 511 201527600 201527090 0.000000e+00 667.0
12 TraesCS7A01G253500 chr3A 97.143 35 0 1 3263 3296 633055468 633055502 1.510000e-04 58.4
13 TraesCS7A01G253500 chr2D 84.600 500 77 0 1 500 3727685 3728184 7.520000e-137 497.0
14 TraesCS7A01G253500 chr2D 85.185 81 7 5 3268 3347 569256817 569256741 1.160000e-10 78.7
15 TraesCS7A01G253500 chr5B 87.172 343 44 0 1 343 700374844 700375186 1.310000e-104 390.0
16 TraesCS7A01G253500 chr5B 82.927 82 10 3 3268 3348 517865332 517865410 1.940000e-08 71.3
17 TraesCS7A01G253500 chr5B 89.286 56 5 1 3297 3352 664685874 664685928 6.990000e-08 69.4
18 TraesCS7A01G253500 chr3B 75.875 514 114 8 1 510 481607459 481607966 1.800000e-63 254.0
19 TraesCS7A01G253500 chr3B 87.500 80 4 3 3265 3344 534059190 534059263 1.930000e-13 87.9
20 TraesCS7A01G253500 chr3B 93.617 47 1 2 535 580 733575579 733575534 6.990000e-08 69.4
21 TraesCS7A01G253500 chr3B 85.484 62 8 1 505 566 17999036 17998976 3.250000e-06 63.9
22 TraesCS7A01G253500 chr1A 86.420 81 7 3 3268 3348 339097986 339097910 6.940000e-13 86.1
23 TraesCS7A01G253500 chr4B 83.544 79 4 7 3266 3339 142056885 142056811 9.040000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G253500 chr7A 239029890 239033788 3898 False 7201 7201 100.000 1 3899 1 chr7A.!!$F2 3898
1 TraesCS7A01G253500 chr7B 198932247 198935534 3287 False 4100 4100 89.471 522 3785 1 chr7B.!!$F2 3263
2 TraesCS7A01G253500 chr7D 227166475 227169119 2644 False 4076 4076 94.723 629 3238 1 chr7D.!!$F2 2609
3 TraesCS7A01G253500 chr6D 61762229 61762734 505 True 736 736 92.885 1 506 1 chr6D.!!$R1 505
4 TraesCS7A01G253500 chr1B 144232082 144232589 507 False 717 717 92.126 1 508 1 chr1B.!!$F2 507
5 TraesCS7A01G253500 chr1B 144126984 144127487 503 False 708 708 91.929 1 508 1 chr1B.!!$F1 507
6 TraesCS7A01G253500 chr3A 201527090 201527600 510 True 667 667 90.215 1 511 1 chr3A.!!$R1 510
7 TraesCS7A01G253500 chr3B 481607459 481607966 507 False 254 254 75.875 1 510 1 chr3B.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 624 0.320374 ATCCAGACGTTTGAGGCGAA 59.68 50.0 7.81 0.0 0.00 4.70 F
1192 1224 0.250252 GCTCTATTCAGCTGCTCCCC 60.25 60.0 9.47 0.0 36.38 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2051 2083 3.374988 CGCTTTTAGCATCATGAGAACCA 59.625 43.478 0.09 0.0 42.58 3.67 R
3051 3083 0.886563 ATCTTCTGCCTGCAACAAGC 59.113 50.000 5.87 0.0 45.96 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.222173 TGGTTCTGTTGTAGTTGCCAT 57.778 42.857 0.00 0.00 0.00 4.40
205 206 4.576463 GCTCGGACATCATTAGTTGGAATT 59.424 41.667 0.00 0.00 0.00 2.17
223 224 8.352942 GTTGGAATTGAGTGTTTTGATAGTCTT 58.647 33.333 0.00 0.00 0.00 3.01
241 242 5.655488 AGTCTTCATAAGAACATCCTCACG 58.345 41.667 0.00 0.00 39.67 4.35
310 311 0.389391 CCGCCATACTCGATGAACCT 59.611 55.000 0.00 0.00 37.82 3.50
322 323 3.945921 TCGATGAACCTGACGTATTCTCT 59.054 43.478 0.00 0.00 0.00 3.10
326 327 4.270834 TGAACCTGACGTATTCTCTAGCT 58.729 43.478 0.00 0.00 0.00 3.32
335 336 6.263392 TGACGTATTCTCTAGCTATGCTTCTT 59.737 38.462 0.00 0.00 40.44 2.52
346 347 5.320277 AGCTATGCTTCTTTTCTTGGTCTT 58.680 37.500 0.00 0.00 33.89 3.01
350 351 6.959639 ATGCTTCTTTTCTTGGTCTTGTTA 57.040 33.333 0.00 0.00 0.00 2.41
389 390 2.611518 CCGATCGAACTGAAAAGAGCT 58.388 47.619 18.66 0.00 0.00 4.09
440 441 3.313690 TCTGGTATATTACGCGTGCATG 58.686 45.455 24.59 0.09 0.00 4.06
448 449 0.809636 TACGCGTGCATGGAGGAATG 60.810 55.000 24.59 2.26 0.00 2.67
490 491 1.374125 CGGCATGAACACGGACTCA 60.374 57.895 0.00 0.00 0.00 3.41
502 503 3.393800 CACGGACTCAATCTTCTGTGTT 58.606 45.455 2.91 0.00 42.09 3.32
511 512 5.139727 TCAATCTTCTGTGTTTCCCAACAT 58.860 37.500 0.00 0.00 44.85 2.71
512 513 5.598005 TCAATCTTCTGTGTTTCCCAACATT 59.402 36.000 0.00 0.00 44.85 2.71
513 514 6.098124 TCAATCTTCTGTGTTTCCCAACATTT 59.902 34.615 0.00 0.00 44.85 2.32
514 515 5.261209 TCTTCTGTGTTTCCCAACATTTG 57.739 39.130 0.00 0.00 44.85 2.32
515 516 4.952957 TCTTCTGTGTTTCCCAACATTTGA 59.047 37.500 0.00 0.00 44.85 2.69
516 517 4.916983 TCTGTGTTTCCCAACATTTGAG 57.083 40.909 0.00 0.00 44.85 3.02
517 518 4.277476 TCTGTGTTTCCCAACATTTGAGT 58.723 39.130 0.00 0.00 44.85 3.41
518 519 4.709397 TCTGTGTTTCCCAACATTTGAGTT 59.291 37.500 0.00 0.00 44.85 3.01
519 520 5.888724 TCTGTGTTTCCCAACATTTGAGTTA 59.111 36.000 0.00 0.00 44.85 2.24
520 521 6.039270 TCTGTGTTTCCCAACATTTGAGTTAG 59.961 38.462 0.00 0.00 44.85 2.34
524 525 8.021396 GTGTTTCCCAACATTTGAGTTAGATAC 58.979 37.037 0.00 0.00 44.85 2.24
527 528 6.338146 TCCCAACATTTGAGTTAGATACGAG 58.662 40.000 0.00 0.00 0.00 4.18
538 539 1.109609 AGATACGAGGGGTTTCGGTC 58.890 55.000 0.00 0.00 44.57 4.79
540 541 0.822164 ATACGAGGGGTTTCGGTCAG 59.178 55.000 0.00 0.00 44.57 3.51
559 560 2.742372 CCGGACGTTTGAGGCCTG 60.742 66.667 12.00 0.00 0.00 4.85
566 567 1.607148 ACGTTTGAGGCCTGTTTAAGC 59.393 47.619 12.00 0.97 0.00 3.09
573 574 2.877691 CCTGTTTAAGCAGCCCGC 59.122 61.111 13.42 0.00 42.91 6.13
594 595 2.803956 CGTGGGTTGTATTTTCGTGACT 59.196 45.455 0.00 0.00 0.00 3.41
597 598 2.486592 GGGTTGTATTTTCGTGACTGGG 59.513 50.000 0.00 0.00 0.00 4.45
600 601 0.725117 GTATTTTCGTGACTGGGCCG 59.275 55.000 0.00 0.00 0.00 6.13
602 603 0.536460 ATTTTCGTGACTGGGCCGTT 60.536 50.000 0.00 0.00 0.00 4.44
603 604 1.161563 TTTTCGTGACTGGGCCGTTC 61.162 55.000 0.00 0.00 0.00 3.95
604 605 2.313051 TTTCGTGACTGGGCCGTTCA 62.313 55.000 0.00 0.00 0.00 3.18
608 609 2.220586 TGACTGGGCCGTTCATCCA 61.221 57.895 0.00 0.00 0.00 3.41
613 614 2.264794 GGCCGTTCATCCAGACGT 59.735 61.111 0.00 0.00 0.00 4.34
614 615 1.375523 GGCCGTTCATCCAGACGTT 60.376 57.895 0.00 0.00 0.00 3.99
615 616 0.953960 GGCCGTTCATCCAGACGTTT 60.954 55.000 0.00 0.00 0.00 3.60
617 618 1.790755 CCGTTCATCCAGACGTTTGA 58.209 50.000 7.81 0.00 0.00 2.69
618 619 1.726791 CCGTTCATCCAGACGTTTGAG 59.273 52.381 7.81 0.00 0.00 3.02
619 620 1.726791 CGTTCATCCAGACGTTTGAGG 59.273 52.381 7.81 0.00 0.00 3.86
620 621 1.464997 GTTCATCCAGACGTTTGAGGC 59.535 52.381 7.81 0.00 0.00 4.70
621 622 0.389817 TCATCCAGACGTTTGAGGCG 60.390 55.000 7.81 0.00 0.00 5.52
623 624 0.320374 ATCCAGACGTTTGAGGCGAA 59.680 50.000 7.81 0.00 0.00 4.70
625 626 1.156736 CCAGACGTTTGAGGCGAATT 58.843 50.000 7.81 0.00 0.00 2.17
626 627 1.535462 CCAGACGTTTGAGGCGAATTT 59.465 47.619 7.81 0.00 0.00 1.82
627 628 2.574322 CAGACGTTTGAGGCGAATTTG 58.426 47.619 0.00 0.00 0.00 2.32
637 638 1.286880 GCGAATTTGGTGCAGCTGT 59.713 52.632 18.08 0.00 0.00 4.40
646 647 0.961019 GGTGCAGCTGTTCCATTTCA 59.039 50.000 16.64 0.00 0.00 2.69
719 720 2.491621 GCTTTCATCCAAGCGCCC 59.508 61.111 2.29 0.00 39.92 6.13
838 862 4.314440 GTGACCTGCGCCCTGACA 62.314 66.667 4.18 0.00 0.00 3.58
996 1028 2.315901 GATTCCCGTTGCTTCGTTTTG 58.684 47.619 0.00 0.00 0.00 2.44
1069 1101 1.002134 CCTGGTGCCCTCGACAAAT 60.002 57.895 0.00 0.00 0.00 2.32
1159 1191 0.741221 GGTTGCTCCGAGTGACCATC 60.741 60.000 14.08 0.00 0.00 3.51
1167 1199 2.293677 CGAGTGACCATCGGATTCAA 57.706 50.000 0.00 0.00 36.54 2.69
1175 1207 3.385749 ATCGGATTCAACGGCGGCT 62.386 57.895 13.24 0.00 0.00 5.52
1192 1224 0.250252 GCTCTATTCAGCTGCTCCCC 60.250 60.000 9.47 0.00 36.38 4.81
1404 1436 0.252881 TGCTGGAGGAGGTGAAGGAT 60.253 55.000 0.00 0.00 0.00 3.24
1557 1589 0.998145 AGCCCTTCTTGGAGAGCATT 59.002 50.000 0.00 0.00 38.35 3.56
1872 1904 0.537188 AGTGGCTAGACGACATTGGG 59.463 55.000 0.00 0.00 29.67 4.12
2051 2083 6.599638 GGTTCAGGAAAGATGCTATTTACAGT 59.400 38.462 0.00 0.00 0.00 3.55
2411 2443 7.457024 TTGAAGCATCATTCAATGAGAGAAA 57.543 32.000 6.19 0.00 42.68 2.52
2484 2516 0.310854 CACTCAAAACCTTCCGTGGC 59.689 55.000 0.00 0.00 0.00 5.01
2658 2690 5.594725 TCATTCAGGGTATACTCTGAGTGAC 59.405 44.000 37.81 16.27 45.35 3.67
2659 2691 4.586306 TCAGGGTATACTCTGAGTGACA 57.414 45.455 28.12 8.29 35.37 3.58
2746 2778 1.140134 TTGGCTGCTAGAAAGGGGGT 61.140 55.000 0.00 0.00 0.00 4.95
2798 2830 5.620738 ATCCTAGCTTGCTCAGACAAATA 57.379 39.130 0.00 0.00 0.00 1.40
2876 2908 2.502130 ACAAGAGGGAAGTAGCTAAGGC 59.498 50.000 0.00 0.00 39.06 4.35
2892 2924 2.246841 GGCCAAAAACATGCCTTGC 58.753 52.632 0.00 0.00 42.01 4.01
2914 2946 4.125703 CAGTTGAGATCATTAGCACCCTC 58.874 47.826 0.00 0.00 0.00 4.30
2915 2947 4.036518 AGTTGAGATCATTAGCACCCTCT 58.963 43.478 0.00 0.00 0.00 3.69
2934 2966 6.660949 ACCCTCTCCTTTGATGAATTAACTTG 59.339 38.462 0.00 0.00 0.00 3.16
2992 3024 4.652421 TTGATAATTTGCGGCACATCAT 57.348 36.364 0.05 0.00 0.00 2.45
3001 3033 0.176449 CGGCACATCATCTGTCCTCA 59.824 55.000 0.00 0.00 35.29 3.86
3004 3036 3.285484 GGCACATCATCTGTCCTCATTT 58.715 45.455 0.00 0.00 35.29 2.32
3008 3040 6.370994 GGCACATCATCTGTCCTCATTTATAG 59.629 42.308 0.00 0.00 35.29 1.31
3026 3058 2.031919 TGTGGTCGTGTGGATGGC 59.968 61.111 0.00 0.00 0.00 4.40
3033 3065 0.948623 TCGTGTGGATGGCGTTTCTG 60.949 55.000 0.00 0.00 0.00 3.02
3072 3123 2.288640 GCTTGTTGCAGGCAGAAGATTT 60.289 45.455 15.37 0.00 42.31 2.17
3075 3126 2.489329 TGTTGCAGGCAGAAGATTTAGC 59.511 45.455 0.00 0.00 0.00 3.09
3106 3158 4.099266 TGGACCATGTTTTTGAGAGTTTGG 59.901 41.667 0.00 0.00 0.00 3.28
3140 3192 3.525537 TGATGATCAACTCGAGGAAAGC 58.474 45.455 18.41 4.46 0.00 3.51
3166 3219 0.725117 GAGTAATTGTTCCGTGCCCG 59.275 55.000 0.00 0.00 0.00 6.13
3201 3254 5.418840 TGAATCTATTTCACTTTTCCTGCCC 59.581 40.000 0.00 0.00 39.44 5.36
3205 3258 0.106918 TTCACTTTTCCTGCCCACGT 60.107 50.000 0.00 0.00 0.00 4.49
3209 3262 0.609131 CTTTTCCTGCCCACGTGGAT 60.609 55.000 36.07 0.00 37.39 3.41
3211 3264 0.916086 TTTCCTGCCCACGTGGATAT 59.084 50.000 36.07 0.00 37.39 1.63
3214 3268 1.899814 TCCTGCCCACGTGGATATATC 59.100 52.381 36.07 16.21 37.39 1.63
3255 3309 6.323739 TGATATGGGCTAAATCTGAAAAACCC 59.676 38.462 0.00 0.00 36.60 4.11
3257 3311 5.263872 TGGGCTAAATCTGAAAAACCCTA 57.736 39.130 0.00 0.00 37.01 3.53
3264 3318 7.121315 GCTAAATCTGAAAAACCCTACTGTCAT 59.879 37.037 0.00 0.00 0.00 3.06
3266 3320 4.072131 TCTGAAAAACCCTACTGTCATGC 58.928 43.478 0.00 0.00 0.00 4.06
3268 3322 3.568007 TGAAAAACCCTACTGTCATGCAC 59.432 43.478 0.00 0.00 0.00 4.57
3270 3324 2.770164 AACCCTACTGTCATGCACTC 57.230 50.000 0.00 0.00 0.00 3.51
3272 3326 0.179000 CCCTACTGTCATGCACTCCC 59.821 60.000 0.00 0.00 0.00 4.30
3275 3329 2.106566 CTACTGTCATGCACTCCCTCT 58.893 52.381 0.00 0.00 0.00 3.69
3278 3332 1.827344 CTGTCATGCACTCCCTCTGTA 59.173 52.381 0.00 0.00 0.00 2.74
3279 3333 2.234661 CTGTCATGCACTCCCTCTGTAA 59.765 50.000 0.00 0.00 0.00 2.41
3280 3334 2.637382 TGTCATGCACTCCCTCTGTAAA 59.363 45.455 0.00 0.00 0.00 2.01
3281 3335 3.265791 GTCATGCACTCCCTCTGTAAAG 58.734 50.000 0.00 0.00 0.00 1.85
3284 3338 4.041567 TCATGCACTCCCTCTGTAAAGAAA 59.958 41.667 0.00 0.00 0.00 2.52
3287 3341 6.313519 TGCACTCCCTCTGTAAAGAAATAT 57.686 37.500 0.00 0.00 0.00 1.28
3288 3342 7.432148 TGCACTCCCTCTGTAAAGAAATATA 57.568 36.000 0.00 0.00 0.00 0.86
3289 3343 7.857456 TGCACTCCCTCTGTAAAGAAATATAA 58.143 34.615 0.00 0.00 0.00 0.98
3291 3345 8.204836 GCACTCCCTCTGTAAAGAAATATAAGA 58.795 37.037 0.00 0.00 0.00 2.10
3292 3346 9.757227 CACTCCCTCTGTAAAGAAATATAAGAG 57.243 37.037 0.00 0.00 0.00 2.85
3293 3347 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
3295 3349 8.993424 TCCCTCTGTAAAGAAATATAAGAGCTT 58.007 33.333 0.00 0.00 0.00 3.74
3315 3369 5.682943 CTTAGTAGTGATCTAAGCGCTCT 57.317 43.478 12.06 3.67 38.23 4.09
3319 3373 8.843885 TTAGTAGTGATCTAAGCGCTCTTATA 57.156 34.615 12.06 0.00 34.54 0.98
3321 3375 8.343168 AGTAGTGATCTAAGCGCTCTTATATT 57.657 34.615 12.06 0.00 34.54 1.28
3322 3376 8.798402 AGTAGTGATCTAAGCGCTCTTATATTT 58.202 33.333 12.06 0.00 34.54 1.40
3324 3378 7.891561 AGTGATCTAAGCGCTCTTATATTTCT 58.108 34.615 12.06 0.00 34.54 2.52
3325 3379 8.364142 AGTGATCTAAGCGCTCTTATATTTCTT 58.636 33.333 12.06 0.00 34.54 2.52
3327 3381 9.547753 TGATCTAAGCGCTCTTATATTTCTTTT 57.452 29.630 12.06 0.00 34.54 2.27
3333 3387 8.316640 AGCGCTCTTATATTTCTTTTATGGAG 57.683 34.615 2.64 0.00 0.00 3.86
3334 3388 7.389053 AGCGCTCTTATATTTCTTTTATGGAGG 59.611 37.037 2.64 0.00 0.00 4.30
3377 3447 6.608808 AGCTTGTTATATCTTTGGAAATGGCT 59.391 34.615 0.00 0.00 0.00 4.75
3378 3448 6.920210 GCTTGTTATATCTTTGGAAATGGCTC 59.080 38.462 0.00 0.00 0.00 4.70
3379 3449 7.416664 GCTTGTTATATCTTTGGAAATGGCTCA 60.417 37.037 0.00 0.00 0.00 4.26
3380 3450 7.333528 TGTTATATCTTTGGAAATGGCTCAC 57.666 36.000 0.00 0.00 0.00 3.51
3381 3451 7.118723 TGTTATATCTTTGGAAATGGCTCACT 58.881 34.615 0.00 0.00 0.00 3.41
3382 3452 7.067372 TGTTATATCTTTGGAAATGGCTCACTG 59.933 37.037 0.00 0.00 0.00 3.66
3383 3453 3.228188 TCTTTGGAAATGGCTCACTGT 57.772 42.857 0.00 0.00 0.00 3.55
3385 3455 1.909700 TTGGAAATGGCTCACTGTCC 58.090 50.000 0.00 0.00 0.00 4.02
3397 3467 0.687354 CACTGTCCTGGTAGGTGCTT 59.313 55.000 0.00 0.00 36.53 3.91
3398 3468 1.072331 CACTGTCCTGGTAGGTGCTTT 59.928 52.381 0.00 0.00 36.53 3.51
3401 3471 1.493022 TGTCCTGGTAGGTGCTTTTGT 59.507 47.619 0.00 0.00 36.53 2.83
3402 3472 1.880027 GTCCTGGTAGGTGCTTTTGTG 59.120 52.381 0.00 0.00 36.53 3.33
3403 3473 1.202879 TCCTGGTAGGTGCTTTTGTGG 60.203 52.381 0.00 0.00 36.53 4.17
3404 3474 1.478654 CCTGGTAGGTGCTTTTGTGGT 60.479 52.381 0.00 0.00 0.00 4.16
3405 3475 1.608590 CTGGTAGGTGCTTTTGTGGTG 59.391 52.381 0.00 0.00 0.00 4.17
3406 3476 0.313987 GGTAGGTGCTTTTGTGGTGC 59.686 55.000 0.00 0.00 0.00 5.01
3407 3477 1.028905 GTAGGTGCTTTTGTGGTGCA 58.971 50.000 0.00 0.00 0.00 4.57
3408 3478 1.407258 GTAGGTGCTTTTGTGGTGCAA 59.593 47.619 0.00 0.00 38.50 4.08
3409 3479 0.175531 AGGTGCTTTTGTGGTGCAAC 59.824 50.000 0.00 0.00 43.95 4.17
3410 3480 0.175531 GGTGCTTTTGTGGTGCAACT 59.824 50.000 2.04 0.00 40.81 3.16
3411 3481 1.280066 GTGCTTTTGTGGTGCAACTG 58.720 50.000 2.04 0.00 38.50 3.16
3412 3482 0.175302 TGCTTTTGTGGTGCAACTGG 59.825 50.000 2.04 0.00 36.72 4.00
3413 3483 0.175531 GCTTTTGTGGTGCAACTGGT 59.824 50.000 2.04 0.00 36.72 4.00
3414 3484 1.405391 GCTTTTGTGGTGCAACTGGTT 60.405 47.619 2.04 0.00 36.72 3.67
3442 3512 5.178252 GGGAAGAAAAAGATTTGCTGCTTTC 59.822 40.000 0.00 0.72 33.50 2.62
3453 3523 3.865011 TGCTGCTTTCAGTTTGTTTCA 57.135 38.095 0.00 0.00 42.29 2.69
3458 3528 5.174579 GCTGCTTTCAGTTTGTTTCAGATTC 59.825 40.000 0.00 0.00 42.29 2.52
3464 3535 3.059597 CAGTTTGTTTCAGATTCGCGTCT 60.060 43.478 5.77 0.00 0.00 4.18
3480 3551 7.528481 TTCGCGTCTACACATTTTTGTATAT 57.472 32.000 5.77 0.00 31.51 0.86
3481 3552 8.631676 TTCGCGTCTACACATTTTTGTATATA 57.368 30.769 5.77 0.00 31.51 0.86
3482 3553 8.806177 TCGCGTCTACACATTTTTGTATATAT 57.194 30.769 5.77 0.00 31.51 0.86
3483 3554 9.896263 TCGCGTCTACACATTTTTGTATATATA 57.104 29.630 5.77 0.00 31.51 0.86
3512 3583 4.839121 TGGTGCTAGTATAGTTTTGGTGG 58.161 43.478 0.00 0.00 41.93 4.61
3515 3586 6.013553 TGGTGCTAGTATAGTTTTGGTGGTAA 60.014 38.462 0.00 0.00 41.93 2.85
3519 3590 6.258068 GCTAGTATAGTTTTGGTGGTAAGCAG 59.742 42.308 0.00 0.00 41.93 4.24
3547 3618 6.368243 CAGCAGTGATCATGTATACCTCATTC 59.632 42.308 0.00 0.00 0.00 2.67
3548 3619 5.641209 GCAGTGATCATGTATACCTCATTCC 59.359 44.000 0.00 0.00 0.00 3.01
3551 3622 6.013898 AGTGATCATGTATACCTCATTCCCAG 60.014 42.308 0.00 0.00 0.00 4.45
3552 3623 5.846164 TGATCATGTATACCTCATTCCCAGT 59.154 40.000 0.00 0.00 0.00 4.00
3563 3634 2.775384 TCATTCCCAGTACATGTACCCC 59.225 50.000 28.29 8.02 36.75 4.95
3564 3635 1.196911 TTCCCAGTACATGTACCCCG 58.803 55.000 28.29 18.29 36.75 5.73
3567 3640 0.101759 CCAGTACATGTACCCCGACG 59.898 60.000 28.29 12.49 36.75 5.12
3574 3647 0.390735 ATGTACCCCGACGCTGAAAC 60.391 55.000 0.00 0.00 0.00 2.78
3585 3658 3.103738 GACGCTGAAACATGATGAATGC 58.896 45.455 0.00 0.00 40.22 3.56
3607 3680 6.854496 GCATTTCATGGATGCACAAATATT 57.146 33.333 22.14 0.00 46.96 1.28
3608 3681 7.254227 GCATTTCATGGATGCACAAATATTT 57.746 32.000 22.14 0.00 46.96 1.40
3609 3682 7.129622 GCATTTCATGGATGCACAAATATTTG 58.870 34.615 23.60 23.60 46.96 2.32
3640 3713 9.545105 TGCATTTGTTTTTCTTGTAGAATTCAT 57.455 25.926 8.44 0.00 33.67 2.57
3641 3714 9.801714 GCATTTGTTTTTCTTGTAGAATTCATG 57.198 29.630 8.44 0.00 33.67 3.07
3646 3719 9.311916 TGTTTTTCTTGTAGAATTCATGTTTGG 57.688 29.630 8.44 0.00 33.67 3.28
3647 3720 9.528018 GTTTTTCTTGTAGAATTCATGTTTGGA 57.472 29.630 8.44 0.00 33.67 3.53
3648 3721 9.748708 TTTTTCTTGTAGAATTCATGTTTGGAG 57.251 29.630 8.44 0.00 33.67 3.86
3649 3722 8.690203 TTTCTTGTAGAATTCATGTTTGGAGA 57.310 30.769 8.44 0.00 33.67 3.71
3650 3723 7.912056 TCTTGTAGAATTCATGTTTGGAGAG 57.088 36.000 8.44 0.00 0.00 3.20
3661 3746 5.591067 TCATGTTTGGAGAGTTTTTACGGTT 59.409 36.000 0.00 0.00 0.00 4.44
3679 3764 5.332029 CGGTTGCACCATGTTGTACAACA 62.332 47.826 36.27 36.27 41.97 3.33
3680 3765 6.737044 CGGTTGCACCATGTTGTACAACAA 62.737 45.833 37.34 23.95 42.41 2.83
3697 3782 7.757624 TGTACAACAAACATGTCTTTCTTTTCC 59.242 33.333 0.00 0.00 32.27 3.13
3698 3783 6.696411 ACAACAAACATGTCTTTCTTTTCCA 58.304 32.000 0.00 0.00 0.00 3.53
3699 3784 6.589907 ACAACAAACATGTCTTTCTTTTCCAC 59.410 34.615 0.00 0.00 0.00 4.02
3706 3791 6.016276 ACATGTCTTTCTTTTCCACGCTAAAT 60.016 34.615 0.00 0.00 0.00 1.40
3708 3793 7.681939 TGTCTTTCTTTTCCACGCTAAATAT 57.318 32.000 0.00 0.00 0.00 1.28
3717 3802 9.226606 CTTTTCCACGCTAAATATATATTCCCA 57.773 33.333 8.42 0.00 0.00 4.37
3718 3803 8.556213 TTTCCACGCTAAATATATATTCCCAC 57.444 34.615 8.42 0.00 0.00 4.61
3719 3804 6.646267 TCCACGCTAAATATATATTCCCACC 58.354 40.000 8.42 0.00 0.00 4.61
3723 3808 6.592607 ACGCTAAATATATATTCCCACCGTTG 59.407 38.462 8.42 0.00 0.00 4.10
3731 3816 3.586100 ATTCCCACCGTTGCAAAATAC 57.414 42.857 0.00 0.00 0.00 1.89
3733 3818 2.307768 TCCCACCGTTGCAAAATACAA 58.692 42.857 0.00 0.00 0.00 2.41
3741 3826 4.109050 CGTTGCAAAATACAAGGTGTGTT 58.891 39.130 0.00 0.00 41.98 3.32
3743 3828 5.744345 CGTTGCAAAATACAAGGTGTGTTAA 59.256 36.000 0.00 0.00 41.98 2.01
3744 3829 6.291374 CGTTGCAAAATACAAGGTGTGTTAAC 60.291 38.462 0.00 0.00 41.98 2.01
3747 3832 7.324178 TGCAAAATACAAGGTGTGTTAACTTT 58.676 30.769 7.22 0.00 41.98 2.66
3748 3833 7.819900 TGCAAAATACAAGGTGTGTTAACTTTT 59.180 29.630 7.22 0.00 41.98 2.27
3755 3840 7.255569 ACAAGGTGTGTTAACTTTTAGAAAGC 58.744 34.615 7.22 0.00 37.01 3.51
3757 3842 5.008316 AGGTGTGTTAACTTTTAGAAAGCCG 59.992 40.000 7.22 0.00 0.00 5.52
3762 3847 7.148205 TGTGTTAACTTTTAGAAAGCCGAACTT 60.148 33.333 7.22 0.00 41.70 2.66
3767 3852 6.756221 ACTTTTAGAAAGCCGAACTTCTCTA 58.244 36.000 0.58 0.00 37.75 2.43
3774 3859 3.600388 AGCCGAACTTCTCTATGTTTGG 58.400 45.455 7.55 7.55 45.74 3.28
3776 3861 2.348666 CCGAACTTCTCTATGTTTGGCG 59.651 50.000 0.00 0.00 39.83 5.69
3785 3870 7.491696 ACTTCTCTATGTTTGGCGTAGTTTATC 59.508 37.037 0.00 0.00 37.80 1.75
3786 3871 6.869695 TCTCTATGTTTGGCGTAGTTTATCA 58.130 36.000 0.00 0.00 37.80 2.15
3787 3872 7.497595 TCTCTATGTTTGGCGTAGTTTATCAT 58.502 34.615 0.00 0.00 37.80 2.45
3788 3873 7.652105 TCTCTATGTTTGGCGTAGTTTATCATC 59.348 37.037 0.00 0.00 37.80 2.92
3789 3874 4.850859 TGTTTGGCGTAGTTTATCATCG 57.149 40.909 0.00 0.00 0.00 3.84
3790 3875 4.247258 TGTTTGGCGTAGTTTATCATCGT 58.753 39.130 0.00 0.00 0.00 3.73
3791 3876 4.092237 TGTTTGGCGTAGTTTATCATCGTG 59.908 41.667 0.00 0.00 0.00 4.35
3792 3877 3.786516 TGGCGTAGTTTATCATCGTGA 57.213 42.857 0.00 0.00 0.00 4.35
3793 3878 3.702330 TGGCGTAGTTTATCATCGTGAG 58.298 45.455 0.00 0.00 0.00 3.51
3824 3909 7.695480 TCTTATATTTTGCTTGCACCTTACA 57.305 32.000 0.00 0.00 0.00 2.41
3825 3910 8.292444 TCTTATATTTTGCTTGCACCTTACAT 57.708 30.769 0.00 0.00 0.00 2.29
3826 3911 8.190122 TCTTATATTTTGCTTGCACCTTACATG 58.810 33.333 0.00 0.00 0.00 3.21
3827 3912 4.605640 ATTTTGCTTGCACCTTACATGT 57.394 36.364 2.69 2.69 0.00 3.21
3828 3913 3.367992 TTTGCTTGCACCTTACATGTG 57.632 42.857 9.11 0.00 36.79 3.21
3829 3914 1.246649 TGCTTGCACCTTACATGTGG 58.753 50.000 9.11 4.43 34.27 4.17
3830 3915 1.202867 TGCTTGCACCTTACATGTGGA 60.203 47.619 9.11 0.00 34.27 4.02
3831 3916 1.885887 GCTTGCACCTTACATGTGGAA 59.114 47.619 9.11 0.00 40.99 3.53
3832 3917 2.493278 GCTTGCACCTTACATGTGGAAT 59.507 45.455 9.11 0.00 42.07 3.01
3833 3918 3.694072 GCTTGCACCTTACATGTGGAATA 59.306 43.478 9.11 0.00 42.07 1.75
3834 3919 4.201950 GCTTGCACCTTACATGTGGAATAG 60.202 45.833 9.11 2.14 42.07 1.73
3835 3920 4.835284 TGCACCTTACATGTGGAATAGA 57.165 40.909 9.11 0.00 34.27 1.98
3836 3921 4.769688 TGCACCTTACATGTGGAATAGAG 58.230 43.478 9.11 0.00 34.27 2.43
3837 3922 4.130118 GCACCTTACATGTGGAATAGAGG 58.870 47.826 9.11 6.71 34.27 3.69
3838 3923 4.708177 CACCTTACATGTGGAATAGAGGG 58.292 47.826 9.11 0.00 0.00 4.30
3839 3924 4.408921 CACCTTACATGTGGAATAGAGGGA 59.591 45.833 9.11 0.00 0.00 4.20
3840 3925 4.656112 ACCTTACATGTGGAATAGAGGGAG 59.344 45.833 9.11 0.00 0.00 4.30
3841 3926 4.656112 CCTTACATGTGGAATAGAGGGAGT 59.344 45.833 9.11 0.00 0.00 3.85
3842 3927 5.839063 CCTTACATGTGGAATAGAGGGAGTA 59.161 44.000 9.11 0.00 0.00 2.59
3843 3928 6.326583 CCTTACATGTGGAATAGAGGGAGTAA 59.673 42.308 9.11 0.00 0.00 2.24
3844 3929 7.016661 CCTTACATGTGGAATAGAGGGAGTAAT 59.983 40.741 9.11 0.00 0.00 1.89
3845 3930 6.179906 ACATGTGGAATAGAGGGAGTAATG 57.820 41.667 0.00 0.00 0.00 1.90
3846 3931 4.689612 TGTGGAATAGAGGGAGTAATGC 57.310 45.455 0.00 0.00 0.00 3.56
3847 3932 4.037222 TGTGGAATAGAGGGAGTAATGCA 58.963 43.478 0.00 0.00 0.00 3.96
3848 3933 4.660303 TGTGGAATAGAGGGAGTAATGCAT 59.340 41.667 0.00 0.00 0.00 3.96
3849 3934 4.999950 GTGGAATAGAGGGAGTAATGCATG 59.000 45.833 0.00 0.00 0.00 4.06
3850 3935 4.660303 TGGAATAGAGGGAGTAATGCATGT 59.340 41.667 0.00 0.00 0.00 3.21
3851 3936 5.132648 TGGAATAGAGGGAGTAATGCATGTT 59.867 40.000 0.00 0.00 0.00 2.71
3852 3937 6.064717 GGAATAGAGGGAGTAATGCATGTTT 58.935 40.000 0.00 0.00 0.00 2.83
3853 3938 6.016777 GGAATAGAGGGAGTAATGCATGTTTG 60.017 42.308 0.00 0.00 0.00 2.93
3854 3939 3.624777 AGAGGGAGTAATGCATGTTTGG 58.375 45.455 0.00 0.00 0.00 3.28
3855 3940 3.266772 AGAGGGAGTAATGCATGTTTGGA 59.733 43.478 0.00 0.00 0.00 3.53
3856 3941 4.016444 GAGGGAGTAATGCATGTTTGGAA 58.984 43.478 0.00 0.00 0.00 3.53
3857 3942 4.613437 AGGGAGTAATGCATGTTTGGAAT 58.387 39.130 0.00 0.00 0.00 3.01
3858 3943 5.765510 AGGGAGTAATGCATGTTTGGAATA 58.234 37.500 0.00 0.00 0.00 1.75
3859 3944 5.829924 AGGGAGTAATGCATGTTTGGAATAG 59.170 40.000 0.00 0.00 0.00 1.73
3860 3945 5.010012 GGGAGTAATGCATGTTTGGAATAGG 59.990 44.000 0.00 0.00 0.00 2.57
3861 3946 5.507985 GGAGTAATGCATGTTTGGAATAGGC 60.508 44.000 0.00 0.00 0.00 3.93
3862 3947 3.441496 AATGCATGTTTGGAATAGGCG 57.559 42.857 0.00 0.00 31.69 5.52
3863 3948 1.102154 TGCATGTTTGGAATAGGCGG 58.898 50.000 0.00 0.00 31.69 6.13
3864 3949 0.249031 GCATGTTTGGAATAGGCGGC 60.249 55.000 0.00 0.00 0.00 6.53
3865 3950 0.029300 CATGTTTGGAATAGGCGGCG 59.971 55.000 0.51 0.51 0.00 6.46
3866 3951 1.724582 ATGTTTGGAATAGGCGGCGC 61.725 55.000 26.17 26.17 0.00 6.53
3877 3962 4.481112 GCGGCGCCATTGGTTCTG 62.481 66.667 28.98 7.61 0.00 3.02
3878 3963 3.055719 CGGCGCCATTGGTTCTGT 61.056 61.111 28.98 0.00 0.00 3.41
3879 3964 2.625823 CGGCGCCATTGGTTCTGTT 61.626 57.895 28.98 0.00 0.00 3.16
3880 3965 1.080569 GGCGCCATTGGTTCTGTTG 60.081 57.895 24.80 0.00 0.00 3.33
3881 3966 1.523154 GGCGCCATTGGTTCTGTTGA 61.523 55.000 24.80 0.00 0.00 3.18
3882 3967 0.109597 GCGCCATTGGTTCTGTTGAG 60.110 55.000 4.26 0.00 0.00 3.02
3883 3968 0.109597 CGCCATTGGTTCTGTTGAGC 60.110 55.000 4.26 0.00 0.00 4.26
3884 3969 0.961019 GCCATTGGTTCTGTTGAGCA 59.039 50.000 4.26 0.00 0.00 4.26
3885 3970 1.340889 GCCATTGGTTCTGTTGAGCAA 59.659 47.619 4.26 0.00 38.66 3.91
3886 3971 2.224018 GCCATTGGTTCTGTTGAGCAAA 60.224 45.455 4.26 0.00 37.93 3.68
3887 3972 3.740764 GCCATTGGTTCTGTTGAGCAAAA 60.741 43.478 4.26 0.00 37.93 2.44
3888 3973 3.803778 CCATTGGTTCTGTTGAGCAAAAC 59.196 43.478 0.00 0.00 37.93 2.43
3889 3974 3.518634 TTGGTTCTGTTGAGCAAAACC 57.481 42.857 0.00 0.00 32.19 3.27
3890 3975 1.754226 TGGTTCTGTTGAGCAAAACCC 59.246 47.619 2.01 0.00 0.00 4.11
3891 3976 1.068588 GGTTCTGTTGAGCAAAACCCC 59.931 52.381 0.00 0.00 0.00 4.95
3892 3977 1.028905 TTCTGTTGAGCAAAACCCCG 58.971 50.000 0.00 0.00 0.00 5.73
3893 3978 0.181587 TCTGTTGAGCAAAACCCCGA 59.818 50.000 0.00 0.00 0.00 5.14
3894 3979 1.028905 CTGTTGAGCAAAACCCCGAA 58.971 50.000 0.00 0.00 0.00 4.30
3895 3980 1.001378 CTGTTGAGCAAAACCCCGAAG 60.001 52.381 0.00 0.00 0.00 3.79
3896 3981 0.318699 GTTGAGCAAAACCCCGAAGC 60.319 55.000 0.00 0.00 0.00 3.86
3897 3982 1.460273 TTGAGCAAAACCCCGAAGCC 61.460 55.000 0.00 0.00 0.00 4.35
3898 3983 1.603739 GAGCAAAACCCCGAAGCCT 60.604 57.895 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.695816 GAAACAGTGGCTTTTCACACTC 58.304 45.455 0.00 0.00 45.52 3.51
51 52 3.196469 AGATGAGGAATTGACGCAGAAGA 59.804 43.478 0.00 0.00 0.00 2.87
205 206 9.996554 TTCTTATGAAGACTATCAAAACACTCA 57.003 29.630 0.00 0.00 37.23 3.41
223 224 4.382685 GGGAACGTGAGGATGTTCTTATGA 60.383 45.833 0.00 0.00 44.51 2.15
241 242 2.789409 AGATACAAGTGCCTGGGAAC 57.211 50.000 0.00 0.00 0.00 3.62
289 290 0.104304 GTTCATCGAGTATGGCGGGT 59.896 55.000 0.00 0.00 36.15 5.28
310 311 5.765677 AGAAGCATAGCTAGAGAATACGTCA 59.234 40.000 0.00 0.00 38.25 4.35
322 323 6.054860 AGACCAAGAAAAGAAGCATAGCTA 57.945 37.500 0.00 0.00 38.25 3.32
326 327 6.959639 AACAAGACCAAGAAAAGAAGCATA 57.040 33.333 0.00 0.00 0.00 3.14
346 347 3.373748 CCTATCGCATGCTTGTTGTAACA 59.626 43.478 17.13 0.00 37.08 2.41
350 351 0.734889 GCCTATCGCATGCTTGTTGT 59.265 50.000 17.13 0.00 37.47 3.32
389 390 4.592942 AGCTGGCACTATGAAAAGAATGA 58.407 39.130 0.00 0.00 0.00 2.57
440 441 2.334023 AGTGATCCTAGGCATTCCTCC 58.666 52.381 2.96 0.00 43.06 4.30
448 449 2.549778 GGATGCTCAAGTGATCCTAGGC 60.550 54.545 2.96 0.00 34.00 3.93
490 491 6.098124 TCAAATGTTGGGAAACACAGAAGATT 59.902 34.615 0.00 0.00 35.22 2.40
500 501 7.118680 TCGTATCTAACTCAAATGTTGGGAAAC 59.881 37.037 0.00 0.00 34.45 2.78
502 503 6.703319 TCGTATCTAACTCAAATGTTGGGAA 58.297 36.000 0.00 0.00 34.45 3.97
511 512 5.622914 CGAAACCCCTCGTATCTAACTCAAA 60.623 44.000 0.00 0.00 34.08 2.69
512 513 4.142315 CGAAACCCCTCGTATCTAACTCAA 60.142 45.833 0.00 0.00 34.08 3.02
513 514 3.379372 CGAAACCCCTCGTATCTAACTCA 59.621 47.826 0.00 0.00 34.08 3.41
514 515 3.243334 CCGAAACCCCTCGTATCTAACTC 60.243 52.174 0.00 0.00 37.11 3.01
515 516 2.692041 CCGAAACCCCTCGTATCTAACT 59.308 50.000 0.00 0.00 37.11 2.24
516 517 2.428530 ACCGAAACCCCTCGTATCTAAC 59.571 50.000 0.00 0.00 37.11 2.34
517 518 2.689983 GACCGAAACCCCTCGTATCTAA 59.310 50.000 0.00 0.00 37.11 2.10
518 519 2.301346 GACCGAAACCCCTCGTATCTA 58.699 52.381 0.00 0.00 37.11 1.98
519 520 1.109609 GACCGAAACCCCTCGTATCT 58.890 55.000 0.00 0.00 37.11 1.98
520 521 0.819582 TGACCGAAACCCCTCGTATC 59.180 55.000 0.00 0.00 37.11 2.24
524 525 1.080025 GACTGACCGAAACCCCTCG 60.080 63.158 0.00 0.00 38.58 4.63
538 539 2.027625 GCCTCAAACGTCCGGACTG 61.028 63.158 30.92 24.96 0.00 3.51
540 541 2.741211 GGCCTCAAACGTCCGGAC 60.741 66.667 25.28 25.28 0.00 4.79
546 547 1.607148 GCTTAAACAGGCCTCAAACGT 59.393 47.619 0.00 0.00 0.00 3.99
559 560 2.175811 CACGCGGGCTGCTTAAAC 59.824 61.111 17.54 0.00 43.27 2.01
573 574 2.803956 AGTCACGAAAATACAACCCACG 59.196 45.455 0.00 0.00 0.00 4.94
574 575 3.058501 CCAGTCACGAAAATACAACCCAC 60.059 47.826 0.00 0.00 0.00 4.61
575 576 3.142951 CCAGTCACGAAAATACAACCCA 58.857 45.455 0.00 0.00 0.00 4.51
576 577 2.486592 CCCAGTCACGAAAATACAACCC 59.513 50.000 0.00 0.00 0.00 4.11
580 581 1.816074 GGCCCAGTCACGAAAATACA 58.184 50.000 0.00 0.00 0.00 2.29
582 583 0.322322 ACGGCCCAGTCACGAAAATA 59.678 50.000 0.00 0.00 0.00 1.40
594 595 2.668632 GTCTGGATGAACGGCCCA 59.331 61.111 0.00 0.00 0.00 5.36
597 598 0.165944 CAAACGTCTGGATGAACGGC 59.834 55.000 0.00 0.00 0.00 5.68
600 601 1.464997 GCCTCAAACGTCTGGATGAAC 59.535 52.381 0.00 0.00 0.00 3.18
602 603 0.389817 CGCCTCAAACGTCTGGATGA 60.390 55.000 0.00 0.00 0.00 2.92
603 604 0.389817 TCGCCTCAAACGTCTGGATG 60.390 55.000 0.00 0.00 0.00 3.51
604 605 0.320374 TTCGCCTCAAACGTCTGGAT 59.680 50.000 0.00 0.00 0.00 3.41
608 609 1.535462 CCAAATTCGCCTCAAACGTCT 59.465 47.619 0.00 0.00 0.00 4.18
610 611 1.001815 CACCAAATTCGCCTCAAACGT 60.002 47.619 0.00 0.00 0.00 3.99
613 614 1.000385 CTGCACCAAATTCGCCTCAAA 60.000 47.619 0.00 0.00 0.00 2.69
614 615 0.597568 CTGCACCAAATTCGCCTCAA 59.402 50.000 0.00 0.00 0.00 3.02
615 616 1.865788 GCTGCACCAAATTCGCCTCA 61.866 55.000 0.00 0.00 0.00 3.86
617 618 1.604593 AGCTGCACCAAATTCGCCT 60.605 52.632 1.02 0.00 0.00 5.52
618 619 1.444895 CAGCTGCACCAAATTCGCC 60.445 57.895 0.00 0.00 0.00 5.54
619 620 0.318955 AACAGCTGCACCAAATTCGC 60.319 50.000 15.27 0.00 0.00 4.70
620 621 1.666888 GGAACAGCTGCACCAAATTCG 60.667 52.381 15.27 0.00 0.00 3.34
621 622 1.340889 TGGAACAGCTGCACCAAATTC 59.659 47.619 24.03 14.18 0.00 2.17
623 624 3.130264 TGGAACAGCTGCACCAAAT 57.870 47.368 24.03 0.00 0.00 2.32
637 638 0.814457 CGGGCCGATTTGAAATGGAA 59.186 50.000 24.41 0.00 0.00 3.53
747 748 1.850755 GGAGGACCTGGGGTTTGGA 60.851 63.158 0.00 0.00 35.25 3.53
996 1028 1.250840 GGAGGTGGTTGTTCATGGCC 61.251 60.000 0.00 0.00 0.00 5.36
1113 1145 0.552848 ATGCCGGGAATGATCCTTGT 59.447 50.000 0.00 0.00 45.77 3.16
1149 1181 1.927174 CGTTGAATCCGATGGTCACTC 59.073 52.381 0.00 0.00 0.00 3.51
1150 1182 1.405526 CCGTTGAATCCGATGGTCACT 60.406 52.381 0.00 0.00 0.00 3.41
1151 1183 1.006832 CCGTTGAATCCGATGGTCAC 58.993 55.000 0.00 0.00 0.00 3.67
1155 1187 2.534019 CCGCCGTTGAATCCGATGG 61.534 63.158 0.00 0.00 36.17 3.51
1159 1191 2.622903 TAGAGCCGCCGTTGAATCCG 62.623 60.000 0.00 0.00 0.00 4.18
1167 1199 2.107141 GCTGAATAGAGCCGCCGT 59.893 61.111 0.00 0.00 32.35 5.68
1175 1207 1.418334 GAGGGGAGCAGCTGAATAGA 58.582 55.000 20.43 0.00 0.00 1.98
1192 1224 2.592993 TTTCCCCCTCGCTGTGGAG 61.593 63.158 0.00 0.00 0.00 3.86
2051 2083 3.374988 CGCTTTTAGCATCATGAGAACCA 59.625 43.478 0.09 0.00 42.58 3.67
2484 2516 4.090066 CGATCTTGTAGTTCGTCACCTTTG 59.910 45.833 0.00 0.00 33.93 2.77
2658 2690 0.971386 AAGCAGGGAAAGCAACCATG 59.029 50.000 0.00 0.00 41.34 3.66
2659 2691 0.971386 CAAGCAGGGAAAGCAACCAT 59.029 50.000 0.00 0.00 0.00 3.55
2746 2778 1.301623 CCAGCCGGGATGTAACCAA 59.698 57.895 11.89 0.00 40.01 3.67
2876 2908 2.243602 ACTGCAAGGCATGTTTTTGG 57.756 45.000 0.00 0.00 38.13 3.28
2892 2924 4.125703 GAGGGTGCTAATGATCTCAACTG 58.874 47.826 0.00 0.00 0.00 3.16
2914 2946 9.185192 GTGAAACAAGTTAATTCATCAAAGGAG 57.815 33.333 5.96 0.00 35.70 3.69
2915 2947 8.912988 AGTGAAACAAGTTAATTCATCAAAGGA 58.087 29.630 5.96 0.00 41.43 3.36
2934 2966 5.007626 TGTGAGCAAATGTAGACAGTGAAAC 59.992 40.000 0.00 0.00 0.00 2.78
2980 3012 1.450134 GGACAGATGATGTGCCGCA 60.450 57.895 0.00 0.00 44.02 5.69
2992 3024 5.163550 CGACCACACTATAAATGAGGACAGA 60.164 44.000 7.01 0.00 32.63 3.41
3001 3033 4.811969 TCCACACGACCACACTATAAAT 57.188 40.909 0.00 0.00 0.00 1.40
3004 3036 2.429250 CCATCCACACGACCACACTATA 59.571 50.000 0.00 0.00 0.00 1.31
3008 3040 2.325082 GCCATCCACACGACCACAC 61.325 63.158 0.00 0.00 0.00 3.82
3026 3058 3.646554 TGCAGCAGAGCAGAAACG 58.353 55.556 0.00 0.00 40.11 3.60
3033 3065 2.039405 CCAGTTCCTGCAGCAGAGC 61.039 63.158 24.90 12.68 32.44 4.09
3051 3083 0.886563 ATCTTCTGCCTGCAACAAGC 59.113 50.000 5.87 0.00 45.96 4.01
3058 3109 3.192212 AGTTTGCTAAATCTTCTGCCTGC 59.808 43.478 0.00 0.00 0.00 4.85
3072 3123 6.909550 AAAACATGGTCCAATAGTTTGCTA 57.090 33.333 16.52 0.00 33.19 3.49
3075 3126 7.432869 TCTCAAAAACATGGTCCAATAGTTTG 58.567 34.615 16.52 14.27 33.19 2.93
3106 3158 7.427606 CGAGTTGATCATCAAACTCTAAAATGC 59.572 37.037 18.52 0.36 38.22 3.56
3160 3213 4.016706 AGCACTACCACCGGGCAC 62.017 66.667 6.32 0.00 37.90 5.01
3161 3214 4.015406 CAGCACTACCACCGGGCA 62.015 66.667 6.32 0.00 37.90 5.36
3166 3219 5.428253 TGAAATAGATTCAGCACTACCACC 58.572 41.667 0.00 0.00 43.08 4.61
3201 3254 7.260603 TGAAGCATCTATGATATATCCACGTG 58.739 38.462 9.08 9.08 0.00 4.49
3214 3268 6.482641 GCCCATATCATACTGAAGCATCTATG 59.517 42.308 0.00 0.00 0.00 2.23
3247 3301 3.821033 AGTGCATGACAGTAGGGTTTTTC 59.179 43.478 0.00 0.00 0.00 2.29
3255 3309 2.106566 AGAGGGAGTGCATGACAGTAG 58.893 52.381 0.00 0.00 29.71 2.57
3257 3311 0.612229 CAGAGGGAGTGCATGACAGT 59.388 55.000 0.00 0.00 33.39 3.55
3264 3318 4.640771 ATTTCTTTACAGAGGGAGTGCA 57.359 40.909 0.00 0.00 0.00 4.57
3266 3320 9.757227 CTCTTATATTTCTTTACAGAGGGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
3268 3322 8.646900 AGCTCTTATATTTCTTTACAGAGGGAG 58.353 37.037 0.00 0.00 0.00 4.30
3293 3347 5.682943 AGAGCGCTTAGATCACTACTAAG 57.317 43.478 13.26 0.00 45.31 2.18
3295 3349 9.451002 AATATAAGAGCGCTTAGATCACTACTA 57.549 33.333 13.26 1.66 37.50 1.82
3296 3350 7.931578 ATATAAGAGCGCTTAGATCACTACT 57.068 36.000 13.26 0.00 39.79 2.57
3297 3351 8.973835 AAATATAAGAGCGCTTAGATCACTAC 57.026 34.615 13.26 0.00 37.50 2.73
3299 3353 7.891561 AGAAATATAAGAGCGCTTAGATCACT 58.108 34.615 13.26 14.58 37.50 3.41
3300 3354 8.527567 AAGAAATATAAGAGCGCTTAGATCAC 57.472 34.615 13.26 12.97 37.50 3.06
3301 3355 9.547753 AAAAGAAATATAAGAGCGCTTAGATCA 57.452 29.630 13.26 2.70 37.50 2.92
3306 3360 9.772973 TCCATAAAAGAAATATAAGAGCGCTTA 57.227 29.630 13.26 12.50 40.65 3.09
3308 3362 7.389053 CCTCCATAAAAGAAATATAAGAGCGCT 59.611 37.037 11.27 11.27 0.00 5.92
3309 3363 7.361286 CCCTCCATAAAAGAAATATAAGAGCGC 60.361 40.741 0.00 0.00 0.00 5.92
3319 3373 9.942526 ATCAAATACTCCCTCCATAAAAGAAAT 57.057 29.630 0.00 0.00 0.00 2.17
3321 3375 9.847224 GTATCAAATACTCCCTCCATAAAAGAA 57.153 33.333 0.00 0.00 33.00 2.52
3322 3376 9.225682 AGTATCAAATACTCCCTCCATAAAAGA 57.774 33.333 0.00 0.00 42.17 2.52
3329 3383 7.127339 AGCTAAAAGTATCAAATACTCCCTCCA 59.873 37.037 0.35 0.00 44.94 3.86
3330 3384 7.510407 AGCTAAAAGTATCAAATACTCCCTCC 58.490 38.462 0.35 0.00 44.94 4.30
3331 3385 8.831550 CAAGCTAAAAGTATCAAATACTCCCTC 58.168 37.037 0.35 0.00 44.94 4.30
3333 3387 8.507524 ACAAGCTAAAAGTATCAAATACTCCC 57.492 34.615 0.35 0.00 44.94 4.30
3351 3421 7.779798 AGCCATTTCCAAAGATATAACAAGCTA 59.220 33.333 0.00 0.00 0.00 3.32
3377 3447 0.178932 AGCACCTACCAGGACAGTGA 60.179 55.000 0.00 0.00 37.67 3.41
3378 3448 0.687354 AAGCACCTACCAGGACAGTG 59.313 55.000 0.00 0.00 37.67 3.66
3379 3449 1.435256 AAAGCACCTACCAGGACAGT 58.565 50.000 0.00 0.00 37.67 3.55
3380 3450 2.154462 CAAAAGCACCTACCAGGACAG 58.846 52.381 0.00 0.00 37.67 3.51
3381 3451 1.493022 ACAAAAGCACCTACCAGGACA 59.507 47.619 0.00 0.00 37.67 4.02
3382 3452 1.880027 CACAAAAGCACCTACCAGGAC 59.120 52.381 0.00 0.00 37.67 3.85
3383 3453 1.202879 CCACAAAAGCACCTACCAGGA 60.203 52.381 0.00 0.00 37.67 3.86
3385 3455 1.608590 CACCACAAAAGCACCTACCAG 59.391 52.381 0.00 0.00 0.00 4.00
3397 3467 1.550327 TGAACCAGTTGCACCACAAA 58.450 45.000 0.00 0.00 40.82 2.83
3398 3468 1.476085 CTTGAACCAGTTGCACCACAA 59.524 47.619 0.00 0.00 35.33 3.33
3401 3471 0.754957 CCCTTGAACCAGTTGCACCA 60.755 55.000 0.00 0.00 0.00 4.17
3402 3472 0.467290 TCCCTTGAACCAGTTGCACC 60.467 55.000 0.00 0.00 0.00 5.01
3403 3473 1.338020 CTTCCCTTGAACCAGTTGCAC 59.662 52.381 0.00 0.00 0.00 4.57
3404 3474 1.214175 TCTTCCCTTGAACCAGTTGCA 59.786 47.619 0.00 0.00 0.00 4.08
3405 3475 1.981256 TCTTCCCTTGAACCAGTTGC 58.019 50.000 0.00 0.00 0.00 4.17
3406 3476 5.127031 TCTTTTTCTTCCCTTGAACCAGTTG 59.873 40.000 0.00 0.00 0.00 3.16
3407 3477 5.269189 TCTTTTTCTTCCCTTGAACCAGTT 58.731 37.500 0.00 0.00 0.00 3.16
3408 3478 4.867086 TCTTTTTCTTCCCTTGAACCAGT 58.133 39.130 0.00 0.00 0.00 4.00
3409 3479 6.410942 AATCTTTTTCTTCCCTTGAACCAG 57.589 37.500 0.00 0.00 0.00 4.00
3410 3480 6.581712 CAAATCTTTTTCTTCCCTTGAACCA 58.418 36.000 0.00 0.00 0.00 3.67
3411 3481 5.466728 GCAAATCTTTTTCTTCCCTTGAACC 59.533 40.000 0.00 0.00 0.00 3.62
3412 3482 6.201615 CAGCAAATCTTTTTCTTCCCTTGAAC 59.798 38.462 0.00 0.00 0.00 3.18
3413 3483 6.282930 CAGCAAATCTTTTTCTTCCCTTGAA 58.717 36.000 0.00 0.00 0.00 2.69
3414 3484 5.739935 GCAGCAAATCTTTTTCTTCCCTTGA 60.740 40.000 0.00 0.00 0.00 3.02
3442 3512 3.059597 AGACGCGAATCTGAAACAAACTG 60.060 43.478 15.93 0.00 0.00 3.16
3453 3523 4.451096 ACAAAAATGTGTAGACGCGAATCT 59.549 37.500 15.93 9.13 0.00 2.40
3481 3552 9.594936 AAAACTATACTAGCACCATCTCTCTAT 57.405 33.333 0.00 0.00 0.00 1.98
3482 3553 8.851145 CAAAACTATACTAGCACCATCTCTCTA 58.149 37.037 0.00 0.00 0.00 2.43
3483 3554 7.201956 CCAAAACTATACTAGCACCATCTCTCT 60.202 40.741 0.00 0.00 0.00 3.10
3492 3563 6.036844 GCTTACCACCAAAACTATACTAGCAC 59.963 42.308 0.00 0.00 0.00 4.40
3495 3566 6.258068 GCTGCTTACCACCAAAACTATACTAG 59.742 42.308 0.00 0.00 0.00 2.57
3496 3567 6.110707 GCTGCTTACCACCAAAACTATACTA 58.889 40.000 0.00 0.00 0.00 1.82
3498 3569 4.201783 CGCTGCTTACCACCAAAACTATAC 60.202 45.833 0.00 0.00 0.00 1.47
3501 3572 2.147958 CGCTGCTTACCACCAAAACTA 58.852 47.619 0.00 0.00 0.00 2.24
3503 3574 0.663269 GCGCTGCTTACCACCAAAAC 60.663 55.000 0.00 0.00 0.00 2.43
3512 3583 1.364626 ATCACTGCTGCGCTGCTTAC 61.365 55.000 34.26 11.23 0.00 2.34
3515 3586 2.818714 GATCACTGCTGCGCTGCT 60.819 61.111 34.26 17.98 0.00 4.24
3519 3590 1.224075 ATACATGATCACTGCTGCGC 58.776 50.000 0.00 0.00 0.00 6.09
3547 3618 0.462789 GTCGGGGTACATGTACTGGG 59.537 60.000 29.89 20.07 36.36 4.45
3548 3619 0.101759 CGTCGGGGTACATGTACTGG 59.898 60.000 29.89 20.36 36.36 4.00
3551 3622 0.526954 CAGCGTCGGGGTACATGTAC 60.527 60.000 25.00 25.00 35.40 2.90
3552 3623 0.680601 TCAGCGTCGGGGTACATGTA 60.681 55.000 0.08 0.08 0.00 2.29
3563 3634 3.348309 CATTCATCATGTTTCAGCGTCG 58.652 45.455 0.00 0.00 0.00 5.12
3564 3635 3.103738 GCATTCATCATGTTTCAGCGTC 58.896 45.455 0.00 0.00 34.98 5.19
3567 3640 5.579119 TGAAATGCATTCATCATGTTTCAGC 59.421 36.000 13.38 0.00 43.08 4.26
3600 3673 6.464895 AACAAATGCACGGACAAATATTTG 57.535 33.333 23.60 23.60 43.62 2.32
3601 3674 7.489574 AAAACAAATGCACGGACAAATATTT 57.510 28.000 0.00 0.00 0.00 1.40
3603 3676 6.928492 AGAAAAACAAATGCACGGACAAATAT 59.072 30.769 0.00 0.00 0.00 1.28
3605 3678 5.115480 AGAAAAACAAATGCACGGACAAAT 58.885 33.333 0.00 0.00 0.00 2.32
3606 3679 4.499183 AGAAAAACAAATGCACGGACAAA 58.501 34.783 0.00 0.00 0.00 2.83
3607 3680 4.116747 AGAAAAACAAATGCACGGACAA 57.883 36.364 0.00 0.00 0.00 3.18
3608 3681 3.791973 AGAAAAACAAATGCACGGACA 57.208 38.095 0.00 0.00 0.00 4.02
3609 3682 3.862845 ACAAGAAAAACAAATGCACGGAC 59.137 39.130 0.00 0.00 0.00 4.79
3610 3683 4.116747 ACAAGAAAAACAAATGCACGGA 57.883 36.364 0.00 0.00 0.00 4.69
3611 3684 5.277825 TCTACAAGAAAAACAAATGCACGG 58.722 37.500 0.00 0.00 0.00 4.94
3612 3685 6.804534 TTCTACAAGAAAAACAAATGCACG 57.195 33.333 0.00 0.00 29.99 5.34
3613 3686 8.816144 TGAATTCTACAAGAAAAACAAATGCAC 58.184 29.630 7.05 0.00 37.82 4.57
3614 3687 8.939201 TGAATTCTACAAGAAAAACAAATGCA 57.061 26.923 7.05 0.00 37.82 3.96
3615 3688 9.801714 CATGAATTCTACAAGAAAAACAAATGC 57.198 29.630 7.05 0.00 37.82 3.56
3640 3713 4.439016 GCAACCGTAAAAACTCTCCAAACA 60.439 41.667 0.00 0.00 0.00 2.83
3641 3714 4.039703 GCAACCGTAAAAACTCTCCAAAC 58.960 43.478 0.00 0.00 0.00 2.93
3642 3715 3.695060 TGCAACCGTAAAAACTCTCCAAA 59.305 39.130 0.00 0.00 0.00 3.28
3644 3717 2.614983 GTGCAACCGTAAAAACTCTCCA 59.385 45.455 0.00 0.00 0.00 3.86
3679 3764 4.097892 AGCGTGGAAAAGAAAGACATGTTT 59.902 37.500 0.00 0.00 0.00 2.83
3680 3765 3.632145 AGCGTGGAAAAGAAAGACATGTT 59.368 39.130 0.00 0.00 0.00 2.71
3681 3766 3.214328 AGCGTGGAAAAGAAAGACATGT 58.786 40.909 0.00 0.00 0.00 3.21
3682 3767 3.904136 AGCGTGGAAAAGAAAGACATG 57.096 42.857 0.00 0.00 0.00 3.21
3683 3768 6.575162 ATTTAGCGTGGAAAAGAAAGACAT 57.425 33.333 0.00 0.00 0.00 3.06
3697 3782 6.103997 ACGGTGGGAATATATATTTAGCGTG 58.896 40.000 26.44 14.19 37.26 5.34
3698 3783 6.290294 ACGGTGGGAATATATATTTAGCGT 57.710 37.500 24.11 24.11 35.67 5.07
3699 3784 6.456449 GCAACGGTGGGAATATATATTTAGCG 60.456 42.308 23.32 23.32 34.58 4.26
3706 3791 7.720074 TGTATTTTGCAACGGTGGGAATATATA 59.280 33.333 0.90 0.00 0.00 0.86
3708 3793 5.886474 TGTATTTTGCAACGGTGGGAATATA 59.114 36.000 0.90 0.00 0.00 0.86
3712 3797 2.307768 TGTATTTTGCAACGGTGGGAA 58.692 42.857 0.90 0.00 0.00 3.97
3717 3802 2.691011 ACACCTTGTATTTTGCAACGGT 59.309 40.909 0.00 0.00 32.03 4.83
3718 3803 3.049206 CACACCTTGTATTTTGCAACGG 58.951 45.455 0.00 0.00 0.00 4.44
3719 3804 3.701241 ACACACCTTGTATTTTGCAACG 58.299 40.909 0.00 0.00 36.32 4.10
3723 3808 7.764695 AAAGTTAACACACCTTGTATTTTGC 57.235 32.000 8.61 0.00 37.51 3.68
3731 3816 6.695713 GGCTTTCTAAAAGTTAACACACCTTG 59.304 38.462 8.61 0.00 0.00 3.61
3733 3818 5.008316 CGGCTTTCTAAAAGTTAACACACCT 59.992 40.000 8.61 0.00 0.00 4.00
3741 3826 7.215085 AGAGAAGTTCGGCTTTCTAAAAGTTA 58.785 34.615 0.00 0.00 37.59 2.24
3743 3828 5.612351 AGAGAAGTTCGGCTTTCTAAAAGT 58.388 37.500 0.00 0.00 37.59 2.66
3744 3829 7.332182 ACATAGAGAAGTTCGGCTTTCTAAAAG 59.668 37.037 6.61 0.00 37.59 2.27
3747 3832 6.282199 ACATAGAGAAGTTCGGCTTTCTAA 57.718 37.500 6.61 0.00 37.59 2.10
3748 3833 5.916661 ACATAGAGAAGTTCGGCTTTCTA 57.083 39.130 6.61 4.41 37.59 2.10
3751 3836 4.455877 CCAAACATAGAGAAGTTCGGCTTT 59.544 41.667 6.61 0.00 37.59 3.51
3755 3840 2.348666 CGCCAAACATAGAGAAGTTCGG 59.651 50.000 0.00 0.00 0.00 4.30
3757 3842 5.169295 ACTACGCCAAACATAGAGAAGTTC 58.831 41.667 0.00 0.00 0.00 3.01
3762 3847 6.869695 TGATAAACTACGCCAAACATAGAGA 58.130 36.000 0.00 0.00 0.00 3.10
3767 3852 4.873827 ACGATGATAAACTACGCCAAACAT 59.126 37.500 0.00 0.00 0.00 2.71
3774 3859 9.504710 AATATATCTCACGATGATAAACTACGC 57.495 33.333 0.00 0.00 31.26 4.42
3798 3883 8.748412 TGTAAGGTGCAAGCAAAATATAAGAAT 58.252 29.630 0.00 0.00 36.26 2.40
3799 3884 8.116651 TGTAAGGTGCAAGCAAAATATAAGAA 57.883 30.769 0.00 0.00 36.26 2.52
3800 3885 7.695480 TGTAAGGTGCAAGCAAAATATAAGA 57.305 32.000 0.00 0.00 36.26 2.10
3801 3886 7.975616 ACATGTAAGGTGCAAGCAAAATATAAG 59.024 33.333 0.00 0.00 36.26 1.73
3802 3887 7.758980 CACATGTAAGGTGCAAGCAAAATATAA 59.241 33.333 0.00 0.00 43.71 0.98
3803 3888 7.257003 CACATGTAAGGTGCAAGCAAAATATA 58.743 34.615 0.00 0.00 43.71 0.86
3804 3889 6.101332 CACATGTAAGGTGCAAGCAAAATAT 58.899 36.000 0.00 0.00 43.71 1.28
3805 3890 5.468592 CACATGTAAGGTGCAAGCAAAATA 58.531 37.500 0.00 0.00 43.71 1.40
3806 3891 4.309099 CACATGTAAGGTGCAAGCAAAAT 58.691 39.130 0.00 0.00 43.71 1.82
3807 3892 3.715495 CACATGTAAGGTGCAAGCAAAA 58.285 40.909 0.00 0.00 43.71 2.44
3808 3893 3.367992 CACATGTAAGGTGCAAGCAAA 57.632 42.857 0.00 0.00 43.71 3.68
3817 3902 4.631234 TCCCTCTATTCCACATGTAAGGT 58.369 43.478 0.00 0.00 0.00 3.50
3818 3903 4.656112 ACTCCCTCTATTCCACATGTAAGG 59.344 45.833 0.00 0.00 0.00 2.69
3819 3904 5.878406 ACTCCCTCTATTCCACATGTAAG 57.122 43.478 0.00 0.00 0.00 2.34
3820 3905 7.689313 GCATTACTCCCTCTATTCCACATGTAA 60.689 40.741 0.00 0.00 0.00 2.41
3821 3906 6.239600 GCATTACTCCCTCTATTCCACATGTA 60.240 42.308 0.00 0.00 0.00 2.29
3822 3907 5.455326 GCATTACTCCCTCTATTCCACATGT 60.455 44.000 0.00 0.00 0.00 3.21
3823 3908 4.999950 GCATTACTCCCTCTATTCCACATG 59.000 45.833 0.00 0.00 0.00 3.21
3824 3909 4.660303 TGCATTACTCCCTCTATTCCACAT 59.340 41.667 0.00 0.00 0.00 3.21
3825 3910 4.037222 TGCATTACTCCCTCTATTCCACA 58.963 43.478 0.00 0.00 0.00 4.17
3826 3911 4.689612 TGCATTACTCCCTCTATTCCAC 57.310 45.455 0.00 0.00 0.00 4.02
3827 3912 4.660303 ACATGCATTACTCCCTCTATTCCA 59.340 41.667 0.00 0.00 0.00 3.53
3828 3913 5.234466 ACATGCATTACTCCCTCTATTCC 57.766 43.478 0.00 0.00 0.00 3.01
3829 3914 6.016777 CCAAACATGCATTACTCCCTCTATTC 60.017 42.308 0.00 0.00 0.00 1.75
3830 3915 5.829924 CCAAACATGCATTACTCCCTCTATT 59.170 40.000 0.00 0.00 0.00 1.73
3831 3916 5.132648 TCCAAACATGCATTACTCCCTCTAT 59.867 40.000 0.00 0.00 0.00 1.98
3832 3917 4.473196 TCCAAACATGCATTACTCCCTCTA 59.527 41.667 0.00 0.00 0.00 2.43
3833 3918 3.266772 TCCAAACATGCATTACTCCCTCT 59.733 43.478 0.00 0.00 0.00 3.69
3834 3919 3.620488 TCCAAACATGCATTACTCCCTC 58.380 45.455 0.00 0.00 0.00 4.30
3835 3920 3.737559 TCCAAACATGCATTACTCCCT 57.262 42.857 0.00 0.00 0.00 4.20
3836 3921 5.010012 CCTATTCCAAACATGCATTACTCCC 59.990 44.000 0.00 0.00 0.00 4.30
3837 3922 5.507985 GCCTATTCCAAACATGCATTACTCC 60.508 44.000 0.00 0.00 0.00 3.85
3838 3923 5.523369 GCCTATTCCAAACATGCATTACTC 58.477 41.667 0.00 0.00 0.00 2.59
3839 3924 4.036734 CGCCTATTCCAAACATGCATTACT 59.963 41.667 0.00 0.00 0.00 2.24
3840 3925 4.290155 CGCCTATTCCAAACATGCATTAC 58.710 43.478 0.00 0.00 0.00 1.89
3841 3926 3.317711 CCGCCTATTCCAAACATGCATTA 59.682 43.478 0.00 0.00 0.00 1.90
3842 3927 2.101249 CCGCCTATTCCAAACATGCATT 59.899 45.455 0.00 0.00 0.00 3.56
3843 3928 1.682854 CCGCCTATTCCAAACATGCAT 59.317 47.619 0.00 0.00 0.00 3.96
3844 3929 1.102154 CCGCCTATTCCAAACATGCA 58.898 50.000 0.00 0.00 0.00 3.96
3845 3930 0.249031 GCCGCCTATTCCAAACATGC 60.249 55.000 0.00 0.00 0.00 4.06
3846 3931 0.029300 CGCCGCCTATTCCAAACATG 59.971 55.000 0.00 0.00 0.00 3.21
3847 3932 1.724582 GCGCCGCCTATTCCAAACAT 61.725 55.000 0.00 0.00 0.00 2.71
3848 3933 2.403378 GCGCCGCCTATTCCAAACA 61.403 57.895 0.00 0.00 0.00 2.83
3849 3934 2.407616 GCGCCGCCTATTCCAAAC 59.592 61.111 0.00 0.00 0.00 2.93
3850 3935 2.826738 GGCGCCGCCTATTCCAAA 60.827 61.111 23.30 0.00 46.69 3.28
3860 3945 4.481112 CAGAACCAATGGCGCCGC 62.481 66.667 23.90 0.00 0.00 6.53
3861 3946 2.625823 AACAGAACCAATGGCGCCG 61.626 57.895 23.90 10.06 0.00 6.46
3862 3947 1.080569 CAACAGAACCAATGGCGCC 60.081 57.895 22.73 22.73 0.00 6.53
3863 3948 0.109597 CTCAACAGAACCAATGGCGC 60.110 55.000 0.00 0.00 0.00 6.53
3864 3949 0.109597 GCTCAACAGAACCAATGGCG 60.110 55.000 0.00 0.00 0.00 5.69
3865 3950 0.961019 TGCTCAACAGAACCAATGGC 59.039 50.000 0.00 0.00 0.00 4.40
3866 3951 3.731652 TTTGCTCAACAGAACCAATGG 57.268 42.857 0.00 0.00 0.00 3.16
3872 3957 1.269051 CGGGGTTTTGCTCAACAGAAC 60.269 52.381 1.71 0.00 41.50 3.01
3873 3958 1.028905 CGGGGTTTTGCTCAACAGAA 58.971 50.000 1.71 0.00 0.00 3.02
3874 3959 0.181587 TCGGGGTTTTGCTCAACAGA 59.818 50.000 1.71 0.00 0.00 3.41
3875 3960 1.001378 CTTCGGGGTTTTGCTCAACAG 60.001 52.381 1.71 0.00 0.00 3.16
3876 3961 1.028905 CTTCGGGGTTTTGCTCAACA 58.971 50.000 1.71 0.00 0.00 3.33
3877 3962 0.318699 GCTTCGGGGTTTTGCTCAAC 60.319 55.000 0.00 0.00 0.00 3.18
3878 3963 1.460273 GGCTTCGGGGTTTTGCTCAA 61.460 55.000 0.00 0.00 0.00 3.02
3879 3964 1.901464 GGCTTCGGGGTTTTGCTCA 60.901 57.895 0.00 0.00 0.00 4.26
3880 3965 1.603739 AGGCTTCGGGGTTTTGCTC 60.604 57.895 0.00 0.00 0.00 4.26
3881 3966 2.520968 AGGCTTCGGGGTTTTGCT 59.479 55.556 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.